RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3434
         (83 letters)



>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 90.4 bits (224), Expect = 1e-24
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
           D VV+PYN+ L++ +L  N D    +DN AL  I    L +  P++  +N LVS  M+  
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236

Query: 79  TSTLR 83
           T+ LR
Sbjct: 237 TTCLR 241


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score = 90.0 bits (223), Expect = 1e-24
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
             VV+PYNS+LT      ++DC  ++DN A+  I    L IE P++  +N L+  I++  
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238

Query: 79  TSTLR 83
           T++LR
Sbjct: 239 TASLR 243


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 88.1 bits (218), Expect = 7e-24
 Identities = 22/65 (33%), Positives = 40/65 (61%)

Query: 19  DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
            VV +PYN++  L  L  +AD  ++ DN AL  +A  + +IE+P+   +N L++  +A  
Sbjct: 179 SVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGI 238

Query: 79  TSTLR 83
           T+++R
Sbjct: 239 TASMR 243


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,662
Number of extensions: 10176
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)