Query psy3437
Match_columns 132
No_of_seqs 131 out of 1129
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 99.9 3.3E-25 1.1E-29 148.9 8.3 72 1-92 9-80 (81)
2 3f27_D Transcription factor SO 99.9 1.1E-24 3.6E-29 146.6 9.3 72 1-92 11-82 (83)
3 3u2b_C Transcription factor SO 99.9 1E-24 3.4E-29 145.3 8.9 72 1-92 7-78 (79)
4 1gt0_D Transcription factor SO 99.9 3.3E-24 1.1E-28 143.4 9.2 73 1-93 7-79 (80)
5 1j46_A SRY, sex-determining re 99.9 4.5E-24 1.5E-28 144.8 9.9 74 1-94 9-82 (85)
6 2lef_A LEF-1 HMG, protein (lym 99.9 8.6E-24 3E-28 143.5 10.3 74 1-94 7-80 (86)
7 4euw_A Transcription factor SO 99.9 9.7E-24 3.3E-28 149.2 9.0 72 1-92 34-105 (106)
8 1hry_A Human SRY; DNA, DNA-bin 99.9 1.1E-23 3.7E-28 139.5 8.3 68 1-88 9-76 (76)
9 1wz6_A HMG-box transcription f 99.9 3.8E-23 1.3E-27 139.0 7.8 70 1-90 12-81 (82)
10 2e6o_A HMG box-containing prot 99.9 2E-22 6.7E-27 137.4 8.4 66 1-86 22-87 (87)
11 4a3n_A Transcription factor SO 99.9 1.5E-21 5E-26 127.2 7.8 65 1-85 7-71 (71)
12 1k99_A Upstream binding factor 99.8 3.9E-21 1.3E-25 134.3 8.1 72 1-92 15-93 (99)
13 2crj_A SWI/SNF-related matrix- 99.8 3.8E-21 1.3E-25 132.2 5.3 76 1-96 12-87 (92)
14 1hme_A High mobility group pro 99.8 5.1E-20 1.7E-24 122.0 8.3 66 1-86 11-76 (77)
15 2co9_A Thymus high mobility gr 99.8 1.9E-20 6.6E-25 131.1 4.8 74 1-94 22-95 (102)
16 2cs1_A PMS1 protein homolog 1; 99.8 4.8E-20 1.6E-24 126.7 6.0 68 1-88 12-79 (92)
17 1wxl_A Single-strand recogniti 99.8 2.3E-19 8E-24 118.2 7.3 63 1-85 8-70 (73)
18 1ckt_A High mobility group 1 p 99.8 3E-19 1E-23 116.4 7.7 64 1-84 6-71 (71)
19 3nm9_A HMG-D, high mobility gr 99.8 2.2E-19 7.5E-24 118.3 5.1 63 1-85 8-70 (73)
20 1aab_A High mobility group pro 99.8 5.2E-19 1.8E-23 119.0 6.2 65 1-85 12-78 (83)
21 2eqz_A High mobility group pro 99.8 7.7E-19 2.6E-23 119.1 5.5 65 1-85 20-86 (86)
22 2gzk_A Sex-determining region 99.8 4.6E-18 1.6E-22 126.1 10.0 72 1-92 9-80 (159)
23 1wgf_A Upstream binding factor 99.7 2E-18 6.7E-23 118.3 5.4 64 1-84 25-88 (90)
24 1cg7_A Protein (NON histone pr 99.7 2.6E-19 9E-24 123.3 -1.4 65 1-85 25-89 (93)
25 2lhj_A High mobility group pro 99.7 4.7E-19 1.6E-23 122.7 -0.5 65 1-85 27-93 (97)
26 2d7l_A WD repeat and HMG-box D 99.7 1.1E-17 3.9E-22 113.5 4.6 65 1-88 10-75 (81)
27 2yrq_A High mobility group pro 99.7 1.5E-17 5.2E-22 125.0 5.7 67 1-87 106-172 (173)
28 2gzk_A Sex-determining region 99.7 4.5E-17 1.5E-21 120.7 5.4 65 1-85 93-157 (159)
29 3fgh_A Transcription factor A, 99.7 6.1E-17 2.1E-21 104.8 4.0 60 1-84 7-66 (67)
30 2yrq_A High mobility group pro 99.6 3.8E-16 1.3E-20 117.4 8.7 67 1-87 20-88 (173)
31 1l8y_A Upstream binding factor 99.6 6.1E-16 2.1E-20 107.7 6.7 65 1-86 9-73 (91)
32 1v63_A Nucleolar transcription 99.6 3.7E-16 1.3E-20 109.5 4.8 64 1-86 13-76 (101)
33 1v64_A Nucleolar transcription 99.6 3.7E-16 1.3E-20 110.8 3.5 62 1-86 22-83 (108)
34 2cto_A Novel protein; high mob 99.6 8.9E-16 3E-20 107.0 4.9 59 1-81 15-76 (93)
35 3tq6_A Transcription factor A, 99.6 1.3E-15 4.5E-20 118.9 5.8 65 1-85 14-78 (214)
36 2yuk_A Myeloid/lymphoid or mix 99.6 9E-16 3.1E-20 106.6 4.0 56 1-80 27-84 (90)
37 3tmm_A Transcription factor A, 99.6 1.9E-15 6.5E-20 119.7 5.7 65 1-85 46-110 (238)
38 3tq6_A Transcription factor A, 99.4 5.2E-14 1.8E-18 109.8 -0.2 63 1-87 119-181 (214)
39 3tmm_A Transcription factor A, 99.3 6.7E-14 2.3E-18 110.8 -0.2 63 1-87 151-213 (238)
40 2yua_A Williams-beuren syndrom 29.0 1E+02 0.0036 19.9 4.8 30 8-37 35-69 (99)
41 1vlu_A Gamma-glutamyl phosphat 24.9 49 0.0017 27.6 3.1 37 42-78 7-53 (468)
42 1o20_A Gamma-glutamyl phosphat 24.8 47 0.0016 27.3 3.0 36 42-77 7-52 (427)
43 2qgu_A Probable signal peptide 24.5 57 0.0019 24.4 3.2 32 54-85 85-117 (211)
44 3nm8_A Tyrosinase; TYPE3 coppe 22.5 43 0.0015 26.8 2.2 25 51-75 7-31 (303)
45 2ctw_A DNAJ homolog subfamily 21.2 1.4E+02 0.0046 19.7 4.3 30 8-37 35-69 (109)
46 2och_A Hypothetical protein DN 20.9 1.4E+02 0.0049 17.9 4.1 30 8-37 26-57 (73)
47 2o37_A Protein SIS1; HSP40, J- 20.2 1.6E+02 0.0054 18.7 4.3 30 8-37 26-57 (92)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=3.3e-25 Score=148.88 Aligned_cols=72 Identities=44% Similarity=0.945 Sum_probs=63.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. ||+++|++|.++|++++++|.++
T Consensus 9 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~~~~~ 68 (81)
T 1i11_A 9 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKA--------------------MTNLEKQPYYEEQARLSKQHLEK 68 (81)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTT--------------------SCSGGGHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccc
Q psy3437 81 HPNYKYQPRRRK 92 (132)
Q Consensus 81 ~p~Yky~p~k~k 92 (132)
||+|+|+|++++
T Consensus 69 ~p~Yky~pr~~~ 80 (81)
T 1i11_A 69 YPDYKYKPRPKR 80 (81)
T ss_dssp CSCC--------
T ss_pred CCCCeeccCCCC
Confidence 999999998875
No 2
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.91 E-value=1.1e-24 Score=146.59 Aligned_cols=72 Identities=67% Similarity=1.120 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|.+|.++|+.++++|..+
T Consensus 11 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 70 (83)
T 3f27_D 11 MNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKA--------------------LTLAEKRPFVEEAERLRVQHMQD 70 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccc
Q psy3437 81 HPNYKYQPRRRK 92 (132)
Q Consensus 81 ~p~Yky~p~k~k 92 (132)
||+|+|+|++++
T Consensus 71 ~~~Yky~P~~kk 82 (83)
T 3f27_D 71 HPNYKYRPRRRK 82 (83)
T ss_dssp CTTCCCCCCC--
T ss_pred CCCCeeCCccCC
Confidence 999999999876
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=1e-24 Score=145.28 Aligned_cols=72 Identities=60% Similarity=1.026 Sum_probs=69.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|.+|.++|+.++++|..+
T Consensus 7 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 66 (79)
T 3u2b_C 7 MNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKL--------------------LKDSDKIPFIQEAERLRLKHMAD 66 (79)
T ss_dssp CCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccc
Q psy3437 81 HPNYKYQPRRRK 92 (132)
Q Consensus 81 ~p~Yky~p~k~k 92 (132)
||+|+|+|+++.
T Consensus 67 ~p~Yky~Prk~~ 78 (79)
T 3u2b_C 67 YPDYKYRPRKKV 78 (79)
T ss_dssp SSSCCCCCCC--
T ss_pred CCCCeeCCCCCC
Confidence 999999999764
No 4
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.91 E-value=3.3e-24 Score=143.45 Aligned_cols=73 Identities=56% Similarity=1.094 Sum_probs=71.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 7 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~y~~~ 66 (80)
T 1gt0_D 7 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKL--------------------LSETEKRPFIDEAKRLRALHMKE 66 (80)
T ss_dssp CCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTT--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCcccc
Q psy3437 81 HPNYKYQPRRRKC 93 (132)
Q Consensus 81 ~p~Yky~p~k~k~ 93 (132)
||+|+|+|++++.
T Consensus 67 ~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 67 HPDYKYRPRRKTK 79 (80)
T ss_dssp CTTCCCCCCCCCC
T ss_pred CcccccCCCCCCC
Confidence 9999999988764
No 5
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.91 E-value=4.5e-24 Score=144.82 Aligned_cols=74 Identities=46% Similarity=0.926 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 9 ~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~y~~~ 68 (85)
T 1j46_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKM--------------------LTEAEKWPFFQEAQKLQAMHREK 68 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTT--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccccc
Q psy3437 81 HPNYKYQPRRRKCS 94 (132)
Q Consensus 81 ~p~Yky~p~k~k~~ 94 (132)
||+|+|+|++++..
T Consensus 69 ~~~Yk~~prr~~~~ 82 (85)
T 1j46_A 69 YPNYKYRPRRKAKM 82 (85)
T ss_dssp CTTCCCCCCCCCCC
T ss_pred CcccccCCCCcccc
Confidence 99999999887654
No 6
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=8.6e-24 Score=143.52 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=70.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 7 ~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~y~~~ 66 (86)
T 2lef_A 7 LNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHA--------------------LSREEQAKYYELARKERQLHMQL 66 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccccc
Q psy3437 81 HPNYKYQPRRRKCS 94 (132)
Q Consensus 81 ~p~Yky~p~k~k~~ 94 (132)
||+|+|+|+..+..
T Consensus 67 ~~~Yk~~p~~~~~k 80 (86)
T 2lef_A 67 YPGWSARDNYGKKK 80 (86)
T ss_dssp STTCCSCSSTTTSC
T ss_pred cccccCCCCCCCCc
Confidence 99999999765433
No 7
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.90 E-value=9.7e-24 Score=149.19 Aligned_cols=72 Identities=78% Similarity=1.290 Sum_probs=65.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.++|++++++|+++||.+|+. |++++|++|.++|++++++|.++
T Consensus 34 ~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~y~~e 93 (106)
T 4euw_A 34 MNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRL--------------------LNESEKRPFVEEAERLRVQHKKD 93 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTT--------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccc
Q psy3437 81 HPNYKYQPRRRK 92 (132)
Q Consensus 81 ~p~Yky~p~k~k 92 (132)
||+|+|+|++++
T Consensus 94 ~~~Yky~PrrkK 105 (106)
T 4euw_A 94 HPDYKYQPRRRK 105 (106)
T ss_dssp CTTCCC------
T ss_pred hhhcCcCCCCCC
Confidence 999999999886
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=1.1e-23 Score=139.53 Aligned_cols=68 Identities=47% Similarity=0.971 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. ||+++|++|.++|+.++++|..+
T Consensus 9 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 68 (76)
T 1hry_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKM--------------------LTEAEKWPFFQEAQKLQAMHREK 68 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHT--------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCC
Q psy3437 81 HPNYKYQP 88 (132)
Q Consensus 81 ~p~Yky~p 88 (132)
||+|+|+|
T Consensus 69 ~~~Yky~P 76 (76)
T 1hry_A 69 YPNYKYRP 76 (76)
T ss_dssp SSSCCCC-
T ss_pred CCCCCCCc
Confidence 99999998
No 9
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=3.8e-23 Score=139.04 Aligned_cols=70 Identities=24% Similarity=0.515 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. ||+++|++|.++|+.++++|..+
T Consensus 12 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 71 (82)
T 1wz6_A 12 MNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV--------------------LDPKEKQKYTDMAKEYKDAFMKA 71 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHT--------------------CCHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCc
Q psy3437 81 HPNYKYQPRR 90 (132)
Q Consensus 81 ~p~Yky~p~k 90 (132)
||+|+|+|++
T Consensus 72 ~~~yk~~p~~ 81 (82)
T 1wz6_A 72 NPGYRSGPSS 81 (82)
T ss_dssp CSSCCCCTTC
T ss_pred hHHhhcCCCC
Confidence 9999999986
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=137.39 Aligned_cols=66 Identities=30% Similarity=0.518 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|++|+++|++++++|.++
T Consensus 22 ~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~~~~~ 81 (87)
T 2e6o_A 22 MNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKK--------------------MKNEERRMYTLEAKALAEEQKRL 81 (87)
T ss_dssp CCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCC
Q psy3437 81 HPNYKY 86 (132)
Q Consensus 81 ~p~Yky 86 (132)
||+|+|
T Consensus 82 ~P~Yky 87 (87)
T 2e6o_A 82 NPDCWK 87 (87)
T ss_dssp CCCCCC
T ss_pred CcCCCC
Confidence 999998
No 11
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.85 E-value=1.5e-21 Score=127.15 Aligned_cols=65 Identities=65% Similarity=1.066 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 7 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 7 MNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKA--------------------LTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
||+|+
T Consensus 67 ~~~YK 71 (71)
T 4a3n_A 67 HPNYK 71 (71)
T ss_dssp CC---
T ss_pred CcCcC
Confidence 99996
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.84 E-value=3.9e-21 Score=134.33 Aligned_cols=72 Identities=21% Similarity=0.430 Sum_probs=68.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHH----
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQI---- 76 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~---- 76 (132)
||||||||++.|..|+.+||++++++|+++||.+|+. ||+++|++|.++|+.++++
T Consensus 15 ~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~Y~~e 74 (99)
T 1k99_A 15 LTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKE--------------------LPEKKKMKYIQDFQREKQEFERN 74 (99)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHH--------------------SCSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 9999999999999999999
Q ss_pred ---HHhhCCCCCCCCCccc
Q psy3437 77 ---HKSEHPNYKYQPRRRK 92 (132)
Q Consensus 77 ---h~~~~p~Yky~p~k~k 92 (132)
|...||+|+|+|++-.
T Consensus 75 ~~~y~~~~P~~~~~~~~~~ 93 (99)
T 1k99_A 75 LARFREDHPDLIQNAKKLE 93 (99)
T ss_dssp HGGGGGCCCCCSCCCCC--
T ss_pred HHHHHHHCCCccCCCcccc
Confidence 8889999999998643
No 13
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.83 E-value=3.8e-21 Score=132.18 Aligned_cols=76 Identities=22% Similarity=0.465 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|.+|.++|+.++++|.++
T Consensus 12 ~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~y~~e 71 (92)
T 2crj_A 12 VTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSK--------------------LQPAEKQRYLDEAEKEKQQYLKE 71 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHT--------------------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccccccC
Q psy3437 81 HPNYKYQPRRRKCSKN 96 (132)
Q Consensus 81 ~p~Yky~p~k~k~~~~ 96 (132)
||+|++.|..+.....
T Consensus 72 ~~~Y~~~~~~~~~~~~ 87 (92)
T 2crj_A 72 LWAYQQSEAYKVCTES 87 (92)
T ss_dssp HHHHHSSHHHHCSSCC
T ss_pred HHHHHccHHHHHHHhc
Confidence 9999998876655544
No 14
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.81 E-value=5.1e-20 Score=122.02 Aligned_cols=66 Identities=23% Similarity=0.537 Sum_probs=64.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 11 ~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~e 70 (77)
T 1hme_A 11 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN--------------------TAADDKQPYEKKAAKLKEKYEKD 70 (77)
T ss_dssp CCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH--------------------SCGGGSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCC
Q psy3437 81 HPNYKY 86 (132)
Q Consensus 81 ~p~Yky 86 (132)
||+|+.
T Consensus 71 ~~~y~~ 76 (77)
T 1hme_A 71 IAAYRA 76 (77)
T ss_dssp HTTSCC
T ss_pred HHHHhc
Confidence 999974
No 15
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.9e-20 Score=131.10 Aligned_cols=74 Identities=15% Similarity=0.343 Sum_probs=69.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|.+|.++|+.++++|..+
T Consensus 22 ~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~y~~e 81 (102)
T 2co9_A 22 VSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDG--------------------LGEEQKQVYKKKTEAAKKEYLKQ 81 (102)
T ss_dssp CCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTT--------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHcc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccccc
Q psy3437 81 HPNYKYQPRRRKCS 94 (132)
Q Consensus 81 ~p~Yky~p~k~k~~ 94 (132)
||+|++++..+...
T Consensus 82 ~~~Y~~~~~~~~~~ 95 (102)
T 2co9_A 82 LAAYRASLVSKSYT 95 (102)
T ss_dssp HHHHHHHHTSSCCC
T ss_pred HHHHHhhccccccc
Confidence 99999877655443
No 16
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=126.67 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|.+|.++|++++++|.++
T Consensus 12 ~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~y~~e 71 (92)
T 2cs1_A 12 MSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKT--------------------LSEEEKLKYEEKATKDLERYNSQ 71 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHS--------------------SCHHHHHHHHHHHHTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCC
Q psy3437 81 HPNYKYQP 88 (132)
Q Consensus 81 ~p~Yky~p 88 (132)
+++|+.+.
T Consensus 72 ~~~y~~~~ 79 (92)
T 2cs1_A 72 MKRAIEQE 79 (92)
T ss_dssp HHHHTSTT
T ss_pred HHHHHHhC
Confidence 99999764
No 17
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.3e-19 Score=118.20 Aligned_cols=63 Identities=32% Similarity=0.605 Sum_probs=61.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. | ++|.+|.++|+.++++|..+
T Consensus 8 ~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------l--~eK~~y~~~A~~~k~~y~~e 65 (73)
T 1wxl_A 8 TTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKE--------------------L--KDKSKWEDAAAKDKQRYHDE 65 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT--------------------C--TTHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------h--HhhHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 9 89999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|+
T Consensus 66 ~~~Y~ 70 (73)
T 1wxl_A 66 MRNYK 70 (73)
T ss_dssp TGGGT
T ss_pred HHHHH
Confidence 99997
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.79 E-value=3e-19 Score=116.44 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCh--HHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHN--AELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~--~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|..|+.+||++++ ++|+++||.+|+. ||+++|.+|.++|+.++++|.
T Consensus 6 ~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~ 65 (71)
T 1ckt_A 6 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT--------------------MSAKEKGKFEDMAKADKARYE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHT--------------------CCTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhh--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999976 9999999999999 999999999999999999999
Q ss_pred hhCCCC
Q psy3437 79 SEHPNY 84 (132)
Q Consensus 79 ~~~p~Y 84 (132)
++++.|
T Consensus 66 ~e~~~Y 71 (71)
T 1ckt_A 66 REMKTY 71 (71)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 999987
No 19
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.77 E-value=2.2e-19 Score=118.33 Aligned_cols=63 Identities=21% Similarity=0.525 Sum_probs=61.5
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++ |++|.++|+.++++|.++
T Consensus 8 ~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~--------------------ls~--K~~y~~~A~~~k~~y~~~ 65 (73)
T 3nm9_A 8 LSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRA--------------------MKD--KSEWEAKAAKAKDDYDRA 65 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH--------------------CSC--CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHc--------------------CCc--hHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 997 999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|+
T Consensus 66 ~~~Y~ 70 (73)
T 3nm9_A 66 VKEFE 70 (73)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 20
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.77 E-value=5.2e-19 Score=118.98 Aligned_cols=65 Identities=25% Similarity=0.370 Sum_probs=63.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLH--NAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~--~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|..|+.+||+++ +++|+++||.+|+. |++++|.+|.++|+.++++|.
T Consensus 12 ~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~ 71 (83)
T 1aab_A 12 MSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKT--------------------MSAKEKGKFEDMAKADKARYE 71 (83)
T ss_dssp CCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTT--------------------SCTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999987 49999999999999 999999999999999999999
Q ss_pred hhCCCCC
Q psy3437 79 SEHPNYK 85 (132)
Q Consensus 79 ~~~p~Yk 85 (132)
.++++|+
T Consensus 72 ~e~~~y~ 78 (83)
T 1aab_A 72 REMKTYI 78 (83)
T ss_dssp HHTTTCC
T ss_pred HHHHHHh
Confidence 9999997
No 21
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=119.13 Aligned_cols=65 Identities=29% Similarity=0.405 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLH--NAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~--~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|..|+.+||+++ +++|+++||.+|+. |++++|.+|.++|+.++++|.
T Consensus 20 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~ 79 (86)
T 2eqz_A 20 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT--------------------MSGKEKSKFDEMAKADKVRYD 79 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHS--------------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999997 59999999999999 999999999999999999999
Q ss_pred hhCCCCC
Q psy3437 79 SEHPNYK 85 (132)
Q Consensus 79 ~~~p~Yk 85 (132)
.+++.|+
T Consensus 80 ~e~~~Y~ 86 (86)
T 2eqz_A 80 REMKDYG 86 (86)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9999885
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=4.6e-18 Score=126.05 Aligned_cols=72 Identities=44% Similarity=0.891 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+||||||+++.|..|+.+||++++++||++||..|++ ||+++|.+|.++|+.+++.|..+
T Consensus 9 ~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 68 (159)
T 2gzk_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKM--------------------LTEAEKWPFFQEAQKLQAMHREK 68 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--------------------hhHHHhccHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCccc
Q psy3437 81 HPNYKYQPRRRK 92 (132)
Q Consensus 81 ~p~Yky~p~k~k 92 (132)
||+|++.|++++
T Consensus 69 ~~~y~~~k~~~k 80 (159)
T 2gzk_A 69 YPNYKYRKGETK 80 (159)
T ss_dssp CSSCSCCCCCCG
T ss_pred hhcccccccccc
Confidence 999999987544
No 23
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.74 E-value=2e-18 Score=118.29 Aligned_cols=64 Identities=22% Similarity=0.481 Sum_probs=61.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||++++++|+++||.+|+. |++++|++|+++|+.++++|.++
T Consensus 25 ~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~y~~e 84 (90)
T 1wgf_A 25 VSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND--------------------LSEKKKAKYKAREAALKAQSERK 84 (90)
T ss_dssp CCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHTTTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999998
Q ss_pred CCCC
Q psy3437 81 HPNY 84 (132)
Q Consensus 81 ~p~Y 84 (132)
|-.+
T Consensus 85 ~~~~ 88 (90)
T 1wgf_A 85 SGPS 88 (90)
T ss_dssp CSSC
T ss_pred HHHh
Confidence 8654
No 24
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.71 E-value=2.6e-19 Score=123.31 Aligned_cols=65 Identities=26% Similarity=0.531 Sum_probs=63.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. ||+++|.+|.++|+.++++|..+
T Consensus 25 ~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~--------------------ls~eeK~~y~~~A~~~k~~y~~e 84 (93)
T 1cg7_A 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA--------------------LTPEEKQPYEAKAQADKKRYESE 84 (93)
T ss_dssp CCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHT--------------------THHHHHHHHHHHHTTHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|+
T Consensus 85 ~~~Y~ 89 (93)
T 1cg7_A 85 KELYN 89 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.71 E-value=4.7e-19 Score=122.73 Aligned_cols=65 Identities=26% Similarity=0.549 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLH--NAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~--~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|..|+.+||+++ +++|+++||.+|+. ||+++|.+|.++|+.++++|.
T Consensus 27 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~--------------------ls~eeK~~Y~~~A~~~k~~y~ 86 (97)
T 2lhj_A 27 LSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNA--------------------LSDEEKKPYERMSDEDRVRYE 86 (97)
T ss_dssp CCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSS--------------------SCSTTTSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999 99999999999999 999999999999999999999
Q ss_pred hhCCCCC
Q psy3437 79 SEHPNYK 85 (132)
Q Consensus 79 ~~~p~Yk 85 (132)
.++++|+
T Consensus 87 ~e~~~y~ 93 (97)
T 2lhj_A 87 REKAEYA 93 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 26
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=113.46 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLH-NAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKS 79 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~-~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~ 79 (132)
||||||||+++|..|+.+||+++ ++||+++||++|++ |++++|++|+++|+.+. ..
T Consensus 10 ~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~--------------------ls~eeK~~y~~~A~~d~---~~ 66 (81)
T 2d7l_A 10 KTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRV--------------------LSTEERKVWANKAKGET---AS 66 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSS--------------------SCHHHHHHHHHHTTSSS---SS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHh---hh
Confidence 79999999999999999999998 99999999999999 99999999999999984 34
Q ss_pred hCCCCCCCC
Q psy3437 80 EHPNYKYQP 88 (132)
Q Consensus 80 ~~p~Yky~p 88 (132)
++++|+.++
T Consensus 67 ~~~e~kkRk 75 (81)
T 2d7l_A 67 EGTEAKKRK 75 (81)
T ss_dssp SCCCCGGGC
T ss_pred hhhhhhhcc
Confidence 566666443
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=125.05 Aligned_cols=67 Identities=22% Similarity=0.536 Sum_probs=65.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. |++++|++|.++|+.++++|..+
T Consensus 106 ~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 165 (173)
T 2yrq_A 106 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN--------------------TAADDKQPYEKKAAKLKEKYEKD 165 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH--------------------SCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCC
Q psy3437 81 HPNYKYQ 87 (132)
Q Consensus 81 ~p~Yky~ 87 (132)
||+|++.
T Consensus 166 ~~~y~~k 172 (173)
T 2yrq_A 166 IAAYRAK 172 (173)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9999864
No 28
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.67 E-value=4.5e-17 Score=120.68 Aligned_cols=65 Identities=23% Similarity=0.556 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.+||++++++|+++||.+|+. ||+++|++|.++|..++++|..+
T Consensus 93 ~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~~~ 152 (159)
T 2gzk_A 93 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN--------------------TAADDKQPYEKKAAKLKEKYEKD 152 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|+
T Consensus 153 ~~~y~ 157 (159)
T 2gzk_A 153 IAAYR 157 (159)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99986
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.65 E-value=6.1e-17 Score=104.81 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..++.+|| ++|++.||.+|+. ||+++|.+|.++|+.++++|.++
T Consensus 7 ~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~Y~~e 62 (67)
T 3fgh_A 7 RSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKN--------------------LSDSEKELYIQHAKEDETRYHNE 62 (67)
T ss_dssp CCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHT--------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999998776 7999999999999 99999999999999999999999
Q ss_pred CCCC
Q psy3437 81 HPNY 84 (132)
Q Consensus 81 ~p~Y 84 (132)
+..|
T Consensus 63 ~~~y 66 (67)
T 3fgh_A 63 MKSW 66 (67)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8776
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=117.38 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHHHHHHhCCC--CChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPS--LHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~--l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|..|+.+||+ +++++|+++||.+|++ ||+++|.+|.++|+.++++|.
T Consensus 20 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~--------------------ls~~eK~~y~~~A~~~k~~y~ 79 (173)
T 2yrq_A 20 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT--------------------MSAKEKGKFEDMAKADKARYE 79 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999 6999999999999999 999999999999999999999
Q ss_pred hhCCCCCCC
Q psy3437 79 SEHPNYKYQ 87 (132)
Q Consensus 79 ~~~p~Yky~ 87 (132)
.++++|.-.
T Consensus 80 ~e~~~y~~~ 88 (173)
T 2yrq_A 80 REMKTYIPP 88 (173)
T ss_dssp HHHHHCCCC
T ss_pred HHhhhhhhh
Confidence 999999843
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.62 E-value=6.1e-16 Score=107.69 Aligned_cols=65 Identities=14% Similarity=0.285 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
++||+||+++.|..++.++|+ ++++|+|.||++|++ |++++|+||+++|..+|++|.++
T Consensus 9 ~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~--------------------ls~~eK~pye~kA~~dK~rYekE 67 (91)
T 1l8y_A 9 KRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNN--------------------MEKKEKLMWIKKAAEDQKRYERE 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHT--------------------TGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999 999999999999999 99999999999999999999999
Q ss_pred CCCCCC
Q psy3437 81 HPNYKY 86 (132)
Q Consensus 81 ~p~Yky 86 (132)
+.+|+-
T Consensus 68 m~~Y~~ 73 (91)
T 1l8y_A 68 LSEMRA 73 (91)
T ss_dssp HHTTSC
T ss_pred HHHHHc
Confidence 999974
No 32
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.61 E-value=3.7e-16 Score=109.51 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||++++. ..++|+++++||++.||++|+. |++++|+||+++|++++++|.++
T Consensus 13 ~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~--------------------ls~~eK~~Y~~~A~~~k~~Y~~e 70 (101)
T 1v63_A 13 MNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQR--------------------ISQSQKEHYKKLAEEQQRQYKVH 70 (101)
T ss_dssp SSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTT--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999964 3345668899999999999999 99999999999999999999999
Q ss_pred CCCCCC
Q psy3437 81 HPNYKY 86 (132)
Q Consensus 81 ~p~Yky 86 (132)
+++|+-
T Consensus 71 ~~~Y~~ 76 (101)
T 1v63_A 71 LDLWVK 76 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999973
No 33
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.59 E-value=3.7e-16 Score=110.79 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+ +++++||++.||.+|+. |++++|.+|.++|+.++++|..+
T Consensus 22 ~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~--------------------Ls~~eK~~Y~~~A~~~k~~Y~~e 77 (108)
T 1v64_A 22 PNSYSLYCAELMANMK----DVPSTERMVLCSQQWKL--------------------LSQKEKDAYHKKCDQKKKDYEVE 77 (108)
T ss_dssp SSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999987 78999999999999999 99999999999999999999999
Q ss_pred CCCCCC
Q psy3437 81 HPNYKY 86 (132)
Q Consensus 81 ~p~Yky 86 (132)
+++|+-
T Consensus 78 ~~~Y~~ 83 (108)
T 1v64_A 78 LLRFLE 83 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999974
No 34
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.9e-16 Score=106.96 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHH---HHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTL---GVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIH 77 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~l---g~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h 77 (132)
||||||||+++|..|+.+ +++++||++.| |++|++ |+++||+||+++|+++|+.|
T Consensus 15 ~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~--------------------ls~eEK~pYe~~A~~~K~~y 72 (93)
T 2cto_A 15 RNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWAL--------------------LREEEKEKYAEMAREWRAAQ 72 (93)
T ss_dssp CCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHH--------------------SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999998 89999999999 999999 99999999999999999999
Q ss_pred HhhC
Q psy3437 78 KSEH 81 (132)
Q Consensus 78 ~~~~ 81 (132)
.++.
T Consensus 73 ~kd~ 76 (93)
T 2cto_A 73 GKDP 76 (93)
T ss_dssp HHCS
T ss_pred hccc
Confidence 9986
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=118.91 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=63.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||++.|..|+.+||++++++|+++||..|++ ||+++|.+|+++|..+++.|.++
T Consensus 14 ~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~--------------------Ls~~EK~~y~~~A~~~k~~y~~e 73 (214)
T 3tq6_A 14 VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRE--------------------LPDSKKKIYQDAYRAEWQVYKEE 73 (214)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------------------cCHHhhhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|.
T Consensus 74 ~~~y~ 78 (214)
T 3tq6_A 74 ISRFK 78 (214)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 99995
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.58 E-value=9e-16 Score=106.55 Aligned_cols=56 Identities=16% Similarity=0.412 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHH
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLH--NAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~--~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
||||||||+++|+.|+.+||+++ ++||+ .+|+. |++++|+||+++|+++|++|+
T Consensus 27 ~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~--------------------ls~eeK~pY~~kA~~~K~~h~ 82 (90)
T 2yuk_A 27 TVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRK--------------------ASSQERAPYVQKARDNRAALR 82 (90)
T ss_dssp SSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHH--------------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHc--------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999 99999 89999 999999999999999999998
Q ss_pred hh
Q psy3437 79 SE 80 (132)
Q Consensus 79 ~~ 80 (132)
..
T Consensus 83 ~~ 84 (90)
T 2yuk_A 83 IN 84 (90)
T ss_dssp HS
T ss_pred hh
Confidence 64
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=119.67 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=63.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
||||||||+++|..|+.+||+++++||+++||..|++ |++++|.+|+++|+.+++.|.++
T Consensus 46 ~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~--------------------Ls~~EK~~y~~~A~~~k~~y~~e 105 (238)
T 3tmm_A 46 VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRE--------------------LPDSKKKIYQDAYRAEWQVYKEE 105 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH--------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCC
Q psy3437 81 HPNYK 85 (132)
Q Consensus 81 ~p~Yk 85 (132)
+++|.
T Consensus 106 ~~~y~ 110 (238)
T 3tmm_A 106 ISRFK 110 (238)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99995
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.36 E-value=5.2e-14 Score=109.84 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.++|+ +|++.||.+|+. |++++|++|+++|+.++++|..+
T Consensus 119 ~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~--------------------ls~~eK~~Y~~~A~~~k~~Y~~e 174 (214)
T 3tq6_A 119 RSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKN--------------------LSDSEKELYIQHAKEDETRYHNE 174 (214)
T ss_dssp CCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHT--------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999998877654 999999999999 99999999999999999999999
Q ss_pred CCCCCCC
Q psy3437 81 HPNYKYQ 87 (132)
Q Consensus 81 ~p~Yky~ 87 (132)
+++|+.+
T Consensus 175 ~~~y~~~ 181 (214)
T 3tq6_A 175 MKSWEEQ 181 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999865
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.35 E-value=6.7e-14 Score=110.76 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhhhhhhccccCCcchhhhcccCChhhchhhHHHHHHHHHHHHhh
Q psy3437 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSE 80 (132)
Q Consensus 1 lNafilf~~~~r~~i~~~~P~l~~~eIsk~lg~~Wk~~~~~~~~~~~~~~~~~~w~~ls~eeK~py~~~A~~~K~~h~~~ 80 (132)
+|||||||+++|..|+.++|+ +|++.||.+|+. |++++|++|+++|+.++++|..+
T Consensus 151 ~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~--------------------ls~~eK~~Y~~~A~~~k~~Y~~e 206 (238)
T 3tmm_A 151 RSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKN--------------------LSDSEKELYIQHAKEDETRYHNE 206 (238)
T ss_dssp CCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHT--------------------CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999877664 999999999999 99999999999999999999999
Q ss_pred CCCCCCC
Q psy3437 81 HPNYKYQ 87 (132)
Q Consensus 81 ~p~Yky~ 87 (132)
++.|+.+
T Consensus 207 ~~~y~~k 213 (238)
T 3tmm_A 207 MKSWEEQ 213 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 40
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=1e+02 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCh-----HHHHHHHHHhhhh
Q psy3437 8 AQAARRTLANQYPSLHN-----AELSKTLGVLWKT 37 (132)
Q Consensus 8 ~~~~r~~i~~~~P~l~~-----~eIsk~lg~~Wk~ 37 (132)
.+++|..++.-||+... .+.-+.|...|..
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~ 69 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVV 69 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888888998763 4566677777777
No 41
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=24.91 E-value=49 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=21.9
Q ss_pred hccccCCcchhh----------hcccCChhhchhhHHHHHHHHHHHH
Q psy3437 42 THYHHVMSPFED----------TYTKLSDSDKKPFIEEAERLRQIHK 78 (132)
Q Consensus 42 ~~~~~~~~~~~~----------~w~~ls~eeK~py~~~A~~~K~~h~ 78 (132)
++-+|+|+.+.. .|+.++.++|......+...-+.+.
T Consensus 7 ~~~~~~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 53 (468)
T 1vlu_A 7 HHHHHHMSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANA 53 (468)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTH
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 455666766553 7888999999888766554444443
No 42
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=24.78 E-value=47 Score=27.25 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=19.7
Q ss_pred hccccCCcchhh----------hcccCChhhchhhHHHHHHHHHHH
Q psy3437 42 THYHHVMSPFED----------TYTKLSDSDKKPFIEEAERLRQIH 77 (132)
Q Consensus 42 ~~~~~~~~~~~~----------~w~~ls~eeK~py~~~A~~~K~~h 77 (132)
++-+|+|.++.. .|+.++.++|..........-+.+
T Consensus 7 ~~~~~~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~ 52 (427)
T 1o20_A 7 HHHHHHMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDER 52 (427)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHh
Confidence 345566655542 688899999988875554444444
No 43
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=24.53 E-value=57 Score=24.40 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=23.1
Q ss_pred hcccCChhhchhhHHH-HHHHHHHHHhhCCCCC
Q psy3437 54 TYTKLSDSDKKPFIEE-AERLRQIHKSEHPNYK 85 (132)
Q Consensus 54 ~w~~ls~eeK~py~~~-A~~~K~~h~~~~p~Yk 85 (132)
-|+++|+++++.|.+. -.-+..-|....-.|.
T Consensus 85 ~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 85 FWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444999999999976 4556667877666665
No 44
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=22.52 E-value=43 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=20.7
Q ss_pred hhhhcccCChhhchhhHHHHHHHHH
Q psy3437 51 FEDTYTKLSDSDKKPFIEEAERLRQ 75 (132)
Q Consensus 51 ~~~~w~~ls~eeK~py~~~A~~~K~ 75 (132)
++-.|..||.+||..|++.-+.++.
T Consensus 7 VRke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 7 VRKNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp EECBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eecchHHCCHHHHHHHHHHHHHHHh
Confidence 4557888999999999988777765
No 45
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.17 E-value=1.4e+02 Score=19.74 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCh-----HHHHHHHHHhhhh
Q psy3437 8 AQAARRTLANQYPSLHN-----AELSKTLGVLWKT 37 (132)
Q Consensus 8 ~~~~r~~i~~~~P~l~~-----~eIsk~lg~~Wk~ 37 (132)
.+++|..++.-||+... .+.-+.|...|..
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~v 69 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 46778888888998764 3566677777777
No 46
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.89 E-value=1.4e+02 Score=17.86 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCh--HHHHHHHHHhhhh
Q psy3437 8 AQAARRTLANQYPSLHN--AELSKTLGVLWKT 37 (132)
Q Consensus 8 ~~~~r~~i~~~~P~l~~--~eIsk~lg~~Wk~ 37 (132)
.+++|...+.-||+... .+.-+.|...|..
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~ 57 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEV 57 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHH
Confidence 46677778888998654 3566677777777
No 47
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1.6e+02 Score=18.68 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCC--hHHHHHHHHHhhhh
Q psy3437 8 AQAARRTLANQYPSLH--NAELSKTLGVLWKT 37 (132)
Q Consensus 8 ~~~~r~~i~~~~P~l~--~~eIsk~lg~~Wk~ 37 (132)
.+++|..++.-||+.. ..+..+.|...|..
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~ 57 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEI 57 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHH
Confidence 4677888888899864 45566677777777
Done!