RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3437
(132 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 73.3 bits (180), Expect = 5e-19
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 20/92 (21%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
MNAFMVW++ RR +A + P +HN+E+SK LG WK L +
Sbjct: 7 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS--------------------E 46
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPRRRK 92
++K+PFI+EA+RLR +H EHP+YKY+PRR+
Sbjct: 47 TEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 78
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 69.1 bits (169), Expect = 2e-17
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 20/92 (21%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
MNAF+VW++ RR +A + P + N+E+SK LG WK L ++
Sbjct: 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML--------------------TE 48
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPRRRK 92
++K PF +EA++L+ +H+ ++PNYKY+PRR+
Sbjct: 49 AEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 66.4 bits (162), Expect = 3e-16
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
+NAFM++ + R + + +A +++ LG W L S
Sbjct: 7 LNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHAL--------------------SR 46
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPRRRKCSK 95
++ + E A + RQ+H +P + + K K
Sbjct: 47 EEQAKYYELARKERQLHMQLYPGWSARDNYGKKKK 81
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 61.4 bits (149), Expect = 2e-14
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
+AF ++ R + ++P L +++K LG +W +
Sbjct: 7 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT--------------------AA 46
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPR 89
DK+P+ ++A +L++ ++ + Y+ + +
Sbjct: 47 DDKQPYEKKAAKLKEKYEKDIAAYRAKGK 75
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 60.6 bits (147), Expect = 4e-14
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 20/84 (23%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
MNAFMVWA+ RR + +P +HN+ +SK LG WK +++
Sbjct: 7 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK--------------------AMTN 46
Query: 61 SDKKPFIEEAERLRQIHKSEHPNY 84
+K+P+ EE RL + H ++P+Y
Sbjct: 47 LEKQPYYEEQARLSKQHLEKYPDY 70
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 55.6 bits (134), Expect = 3e-12
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 22/87 (25%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
++A+M+W +AR ++ + P + E++K G LW+ +
Sbjct: 8 LSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM---------------------- 45
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQ 87
DK + +A + + + ++
Sbjct: 46 KDKSEWEAKAAKAKDDYDRAVKEFEAN 72
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 52.2 bits (125), Expect = 1e-10
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
++A+M +A R + ++ P + ++ K LG WK L+
Sbjct: 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK--------------------ALTP 64
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQP 88
+K+P+ +A+ ++ ++SE Y
Sbjct: 65 EEKQPYEAKAQADKKRYESEKELYNATL 92
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 50.3 bits (120), Expect = 8e-10
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 22/110 (20%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
MN + ++Q + E +G W+ + S
Sbjct: 13 MNGYQKFSQELLSNGELNHLP--LKERMVEIGSRWQRI--------------------SQ 50
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPRRRKCSKNLGTSANNLSKSTSS 110
S K+ + + AE ++ +K + + + +N SS
Sbjct: 51 SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSGPSS 100
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 48.8 bits (116), Expect = 2e-09
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 27/97 (27%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
+ + + R A +P + N +L+K L +K +L +
Sbjct: 15 LTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYK--------------------ELPE 54
Query: 61 SDKKPFIEEAERLRQIH-------KSEHPNYKYQPRR 90
K +I++ +R +Q + +HP+ ++
Sbjct: 55 KKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 48.8 bits (116), Expect = 3e-09
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 24/110 (21%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
N++ ++ + + E WK LS
Sbjct: 22 PNSYSLYCAELMA----NMKDVPSTERMVLCSQQWK--------------------LLSQ 57
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYKYQPRRRKCSKNLGTSANNLSKSTSS 110
+K + ++ ++ ++ ++ E + + + LG SS
Sbjct: 58 KEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGPSS 107
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 47.9 bits (114), Expect = 4e-09
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 22/86 (25%)
Query: 1 MNAFMVWAQAARRTLANQYP--SLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKL 58
M+++ + Q R ++P S++ +E SK WKT+
Sbjct: 6 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM-------------------- 45
Query: 59 SDSDKKPFIEEAERLRQIHKSEHPNY 84
S +K F + A+ + ++ E Y
Sbjct: 46 SAKEKGKFEDMAKADKARYEREMKTY 71
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 45.3 bits (107), Expect = 5e-08
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 1 MNAFMVWAQAARRTLANQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPFEDTYTKLSD 60
++A ++++ RR L + P L +EL++ L +W LS+
Sbjct: 25 VSAMFIFSEEKRRQLQEERPELSESELTRLLARMWN--------------------DLSE 64
Query: 61 SDKKPFIEEAERLRQIHKSEHPNYK 85
K + L+ + +
Sbjct: 65 KKKAKYKAREAALKAQSERKSGPSS 89
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 25.0 bits (53), Expect = 3.8
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 36 KTLKVETHY--HHVMSPFEDTYTKLSDSDKKPFIEEAERLRQIHKSEH 81
K +K++ H + + ++ D PFI+ E +
Sbjct: 203 KAMKIDVLLGPHPEVYGMQAKRAEMKDGAPNPFIKPGELVTYATSLSE 250
>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens),
calgranulin s100a8, MRP8 [TaxId: 9606]}
Length = 87
Score = 22.9 bits (49), Expect = 8.3
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 48 MSPFE-------DTYTKLSDSDKKPFIEEAERLRQIHKSEHPNY 84
++ E D Y K S + L+++ ++E P Y
Sbjct: 2 LTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQY 45
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 23.2 bits (50), Expect = 9.6
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 1 MNAFMVWAQAARRTLA---NQYPSLHNAELSKTLGVLWKTLKVETHYHHVMSPF-EDTYT 56
N+ W + LA + P++ A + E ++ + P ED YT
Sbjct: 24 ANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYT 83
Query: 57 KLSDSDKKPFIEEAERLRQIHKSEHPNYK 85
D+++K ++ K+ Y+
Sbjct: 84 AQVDAEEKEDVKSCAEFLTQSKTRIQEYE 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.126 0.361
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,343
Number of extensions: 18370
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 21
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.5 bits)