BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3438
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
2 (Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2
(Hspa2) From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 100 bits (248), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/48 (95%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 53
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m
Mutant
Length = 381
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 10 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 57
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In
The Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e
Mutant
Length = 381
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a
Mutant
Length = 381
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 24 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange
Complex
Length = 554
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate
Protein From Rattus Norvegicus In Post-Atp Hydrolysis
State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate
Protein From Rattus Norvegicus In Post-Atp Hydrolysis
State
Length = 543
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 98.6 bits (244), Expect = 8e-22, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLG+TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 98.2 bits (243), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GI+LGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GI LGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLG TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1a (Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 28 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 74
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 9 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 55
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
The Apo Form
Length = 391
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 9 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 55
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 30 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 76
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5
And Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5
And Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound
And Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg
Ion-, And K Ion- Bound State
Length = 392
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 10 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 56
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 4 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 50
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 45/47 (95%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSC+ VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 6 AIGIDLGTTYSCIGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 46/47 (97%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
A+GIDLGTTYSCV VFQQG+VEI+ANDQGNRTTPSYVAFTDTERL+G
Sbjct: 26 AVGIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYVAFTDTERLVG 72
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 95.1 bits (235), Expect = 9e-21, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYS V VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>pdb|3QFU|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXED
WITH ADP
Length = 394
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/46 (82%), Positives = 41/46 (89%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGIDLGTTYSCVAV + GK EI+AN+QGNR TPSYVAFTD ERLIG
Sbjct: 21 IGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIG 66
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN
pdb|3QML|A Chain A, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|B Chain B, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 390
Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/46 (82%), Positives = 41/46 (89%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGIDLGTTYSCVAV + GK EI+AN+QGNR TPSYVAFTD ERLIG
Sbjct: 17 IGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIG 62
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PAIGIDLGTTYSCV V++ V+I+ NDQGNRTTPSYVAFT+TERLIG
Sbjct: 20 PAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIG 67
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
Length = 384
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
+GIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFT + ERLIG
Sbjct: 8 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIG 54
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/47 (80%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
+GIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFT + ERLIG
Sbjct: 29 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIG 75
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
AIGIDLGTTYSCVA ++ VEIIAN+QGNR TPS+VAFT ERLIG
Sbjct: 12 AIGIDLGTTYSCVATYESS-VEIIANEQGNRVTPSFVAFTPEERLIG 57
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGIDLGTT SCVAV + G+V++I N +GNRTTPS VAF + ERL+G
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVG 50
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK)
CHAPERONE (1-605) Complexed With Adp And Substrate
Length = 605
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T D E L+G
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T D E L+G
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T D L+G
Sbjct: 5 IGIDLGTTNSCVAIXDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVG 51
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange
Complex
Length = 668
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5 GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G
Sbjct: 8 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 52
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5 GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G
Sbjct: 5 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 49
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5 GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G
Sbjct: 6 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5 GIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G
Sbjct: 6 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGI G + S +A K E+IAN+ G+R P+ +++ D + G
Sbjct: 16 IGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYG 61
>pdb|3CVG|A Chain A, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|B Chain B, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|C Chain C, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|D Chain D, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
Length = 294
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 6 IDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
+D+G TYS VA E I+ G +PSY AF D LIG
Sbjct: 75 VDVGITYSPVA-------ERISIKHGISESPSYYAFRDHFXLIG 111
>pdb|3Q48|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Cupb2
Chaperone
pdb|3Q48|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Cupb2
Chaperone
Length = 257
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 30 QGNRTTPSYVAFTDTE-----RLIGLRKFWFAYFTTYQVDLTGEPDQV 72
Q N TP YV+F E R++ + K A F+T + D G P +
Sbjct: 176 QVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNM 223
>pdb|3H0G|F Chain F, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|R Chain R, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 142
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 32 NRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPD--QVCLSGL 77
+RTT Y+ + R++G R + VDL GE D Q+ + L
Sbjct: 68 DRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKEL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,933,384
Number of Sequences: 62578
Number of extensions: 106573
Number of successful extensions: 236
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 59
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)