Query psy3438
Match_columns 91
No_of_seqs 151 out of 1124
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:42:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11678 putative chaperone; P 99.7 1.5E-18 3.2E-23 132.6 5.8 80 2-86 1-122 (450)
2 KOG0100|consensus 99.7 2.2E-17 4.8E-22 125.4 5.5 55 2-56 37-91 (663)
3 PRK00290 dnaK molecular chaper 99.7 1.9E-16 4.1E-21 124.5 6.3 74 1-80 1-76 (627)
4 PTZ00009 heat shock 70 kDa pro 99.6 3E-16 6.5E-21 124.1 6.7 74 1-80 4-77 (653)
5 PRK05183 hscA chaperone protei 99.6 3.6E-16 7.8E-21 123.0 6.5 73 2-80 20-92 (616)
6 PTZ00400 DnaK-type molecular c 99.6 5E-16 1.1E-20 123.1 7.3 73 2-80 42-115 (663)
7 PRK13410 molecular chaperone D 99.6 4.7E-16 1E-20 123.5 6.9 73 2-80 3-76 (668)
8 PRK13411 molecular chaperone D 99.6 5.1E-16 1.1E-20 122.8 6.9 73 2-80 3-76 (653)
9 CHL00094 dnaK heat shock prote 99.6 6.4E-16 1.4E-20 121.6 7.1 73 2-80 3-76 (621)
10 PTZ00186 heat shock 70 kDa pre 99.6 4.2E-16 9E-21 123.6 5.9 73 2-80 28-100 (657)
11 TIGR01991 HscA Fe-S protein as 99.6 4.3E-16 9.2E-21 122.3 5.6 72 3-80 1-73 (599)
12 PLN03184 chloroplast Hsp70; Pr 99.6 6.9E-16 1.5E-20 122.5 6.8 73 2-80 40-113 (673)
13 TIGR02350 prok_dnaK chaperone 99.6 7.9E-16 1.7E-20 120.2 6.5 73 2-80 1-74 (595)
14 PRK01433 hscA chaperone protei 99.6 3.4E-15 7.4E-20 117.3 6.6 51 2-52 20-70 (595)
15 PF00012 HSP70: Hsp70 protein; 99.5 1.2E-14 2.5E-19 112.5 7.1 54 3-56 1-54 (602)
16 COG0443 DnaK Molecular chapero 99.5 1.1E-14 2.4E-19 114.2 6.7 72 2-79 6-79 (579)
17 KOG0102|consensus 99.3 1.2E-12 2.6E-17 101.7 5.1 55 2-56 28-83 (640)
18 KOG0101|consensus 99.3 1.6E-12 3.4E-17 102.5 5.0 56 1-56 7-62 (620)
19 KOG0103|consensus 99.0 2.3E-10 5E-15 90.8 4.5 56 1-56 1-56 (727)
20 KOG0104|consensus 98.6 2.6E-08 5.5E-13 80.3 3.6 71 2-72 23-99 (902)
21 PRK13929 rod-share determining 98.3 9.5E-07 2.1E-11 65.1 4.6 46 2-56 5-53 (335)
22 TIGR00904 mreB cell shape dete 98.3 9.5E-07 2.1E-11 64.8 4.4 44 3-55 4-54 (333)
23 PRK13928 rod shape-determining 98.1 3.4E-06 7.4E-11 62.0 4.1 45 3-56 5-52 (336)
24 COG1077 MreB Actin-like ATPase 98.1 4.8E-06 1E-10 62.0 4.9 43 3-54 8-55 (342)
25 PF06723 MreB_Mbl: MreB/Mbl pr 98.0 3.8E-06 8.3E-11 62.4 3.2 44 3-55 3-49 (326)
26 PRK13930 rod shape-determining 97.9 1.9E-05 4.1E-10 57.6 4.6 45 3-56 10-57 (335)
27 PRK13927 rod shape-determining 97.8 4.7E-05 1E-09 55.6 5.0 45 3-56 7-54 (334)
28 smart00732 YqgFc Likely ribonu 93.8 0.082 1.8E-06 31.7 3.1 19 1-19 1-19 (99)
29 PF00370 FGGY_N: FGGY family o 93.8 0.081 1.8E-06 36.9 3.4 18 3-20 2-19 (245)
30 PRK10331 L-fuculokinase; Provi 92.4 0.14 3E-06 39.3 3.2 20 3-22 4-24 (470)
31 smart00268 ACTIN Actin. ACTIN 92.3 0.22 4.7E-06 36.8 3.9 45 2-54 2-55 (373)
32 cd00012 ACTIN Actin; An ubiqui 92.0 0.23 4.9E-06 36.8 3.7 46 3-56 1-56 (371)
33 COG1070 XylB Sugar (pentulose 91.7 0.23 5E-06 38.6 3.6 20 2-21 5-24 (502)
34 TIGR01315 5C_CHO_kinase FGGY-f 91.7 0.2 4.3E-06 39.3 3.3 18 2-19 1-18 (541)
35 TIGR00241 CoA_E_activ CoA-subs 91.6 0.22 4.7E-06 35.2 3.1 20 3-22 2-21 (248)
36 TIGR03192 benz_CoA_bzdQ benzoy 91.2 0.25 5.5E-06 36.5 3.3 22 1-22 32-53 (293)
37 PF03652 UPF0081: Uncharacteri 91.2 0.28 6.1E-06 32.1 3.1 21 1-21 1-21 (135)
38 PRK04123 ribulokinase; Provisi 91.0 0.29 6.2E-06 38.3 3.6 17 3-19 5-21 (548)
39 PTZ00294 glycerol kinase-like 90.9 0.28 6.1E-06 38.0 3.4 18 3-20 4-21 (504)
40 TIGR01234 L-ribulokinase L-rib 90.9 0.28 6E-06 38.4 3.4 18 2-19 2-19 (536)
41 TIGR02628 fuculo_kin_coli L-fu 90.8 0.28 6E-06 37.7 3.2 18 3-20 3-20 (465)
42 PRK15027 xylulokinase; Provisi 90.8 0.25 5.5E-06 38.1 3.0 18 3-20 2-19 (484)
43 PRK00039 ruvC Holliday junctio 90.5 0.25 5.5E-06 33.4 2.5 19 1-19 2-20 (164)
44 PLN00130 succinate dehydrogena 90.0 0.028 6E-07 39.2 -2.5 18 3-20 59-76 (213)
45 PRK10939 autoinducer-2 (AI-2) 89.9 0.29 6.3E-06 38.1 2.7 18 3-20 5-22 (520)
46 TIGR01314 gntK_FGGY gluconate 89.4 0.39 8.5E-06 37.2 3.1 18 3-20 2-19 (505)
47 cd00529 RuvC_resolvase Hollida 89.3 0.9 1.9E-05 30.1 4.4 25 2-26 1-27 (154)
48 PF14450 FtsA: Cell division p 89.2 1 2.2E-05 28.5 4.4 21 3-23 1-21 (120)
49 PRK00047 glpK glycerol kinase; 89.1 0.44 9.5E-06 36.9 3.1 17 3-19 7-23 (498)
50 TIGR01311 glycerol_kin glycero 88.8 0.48 1E-05 36.6 3.2 18 2-19 2-19 (493)
51 PLN02295 glycerol kinase 88.7 0.48 1E-05 36.9 3.2 17 3-19 2-18 (512)
52 PTZ00280 Actin-related protein 88.2 0.96 2.1E-05 34.3 4.4 46 2-55 5-63 (414)
53 PRK13321 pantothenate kinase; 85.7 1.3 2.8E-05 31.5 3.7 20 3-22 2-21 (256)
54 PRK13318 pantothenate kinase; 85.4 1.3 2.9E-05 31.5 3.7 20 3-22 2-21 (258)
55 PRK00109 Holliday junction res 85.1 1.2 2.6E-05 29.2 3.1 20 1-20 4-23 (138)
56 PF02075 RuvC: Crossover junct 84.4 2.8 6.1E-05 27.7 4.7 24 3-26 1-26 (149)
57 COG1924 Activator of 2-hydroxy 82.2 2.1 4.6E-05 33.0 3.7 22 1-22 135-156 (396)
58 PRK00292 glk glucokinase; Prov 81.3 2 4.3E-05 31.2 3.2 19 1-19 1-20 (316)
59 PLN02669 xylulokinase 81.2 1.7 3.8E-05 34.4 3.1 18 2-19 9-26 (556)
60 PF00349 Hexokinase_1: Hexokin 81.0 1.9 4.1E-05 30.1 2.9 18 2-19 64-81 (206)
61 TIGR02261 benz_CoA_red_D benzo 80.7 3.1 6.7E-05 30.3 4.0 18 2-19 2-19 (262)
62 COG0816 Predicted endonuclease 80.1 2.3 4.9E-05 28.3 2.9 20 1-20 2-21 (141)
63 TIGR02627 rhamnulo_kin rhamnul 79.9 0.95 2.1E-05 34.6 1.2 16 4-19 1-16 (454)
64 smart00842 FtsA Cell division 79.5 3.1 6.8E-05 28.0 3.6 25 3-27 1-28 (187)
65 PRK13331 pantothenate kinase; 79.1 3 6.4E-05 30.2 3.5 22 1-22 7-28 (251)
66 PTZ00004 actin-2; Provisional 79.0 3.7 8E-05 30.8 4.1 45 2-54 7-61 (378)
67 PF04848 Pox_A22: Poxvirus A22 78.8 5 0.00011 26.7 4.3 27 1-27 1-29 (143)
68 PRK13317 pantothenate kinase; 78.4 4.2 9E-05 29.7 4.1 21 2-22 3-23 (277)
69 TIGR03286 methan_mark_15 putat 78.3 2.5 5.3E-05 32.7 3.0 21 1-21 144-164 (404)
70 PTZ00452 actin; Provisional 77.9 4.7 0.0001 30.3 4.4 45 2-54 6-60 (375)
71 PRK13917 plasmid segregation p 77.3 7.6 0.00017 28.9 5.4 18 1-18 2-19 (344)
72 TIGR01312 XylB D-xylulose kina 77.1 1.5 3.2E-05 33.5 1.5 16 4-19 1-16 (481)
73 TIGR02259 benz_CoA_red_A benzo 76.6 2.8 6.1E-05 32.7 2.9 20 3-22 4-23 (432)
74 PRK00976 hypothetical protein; 76.5 4.3 9.3E-05 30.6 3.8 27 1-27 1-27 (326)
75 PRK13326 pantothenate kinase; 75.7 4.3 9.4E-05 29.4 3.6 21 2-22 7-27 (262)
76 PRK13320 pantothenate kinase; 75.6 4.5 9.8E-05 28.8 3.6 22 1-22 2-23 (244)
77 PTZ00466 actin-like protein; P 75.0 5.1 0.00011 30.2 3.9 46 2-55 13-68 (380)
78 COG4020 Uncharacterized protei 74.9 3.4 7.4E-05 30.6 2.8 22 1-22 3-24 (332)
79 PF13941 MutL: MutL protein 74.8 4.4 9.5E-05 31.8 3.6 25 3-27 2-28 (457)
80 COG4820 EutJ Ethanolamine util 73.2 4.5 9.6E-05 29.2 3.0 21 3-23 31-52 (277)
81 PTZ00281 actin; Provisional 73.0 5.9 0.00013 29.7 3.8 45 2-54 7-61 (376)
82 PLN02405 hexokinase 72.7 1.2 2.7E-05 35.1 0.2 54 3-56 97-152 (497)
83 PLN02362 hexokinase 72.7 1.6 3.5E-05 34.6 0.8 18 2-19 96-113 (509)
84 PLN02914 hexokinase 72.5 1.3 2.7E-05 35.1 0.1 53 3-55 97-151 (490)
85 PF14574 DUF4445: Domain of un 71.9 6 0.00013 30.7 3.7 46 1-56 1-46 (412)
86 PF01548 DEDD_Tnp_IS110: Trans 71.7 9.5 0.00021 24.2 4.2 20 3-22 1-20 (144)
87 PF06277 EutA: Ethanolamine ut 70.8 14 0.0003 29.3 5.5 16 2-17 4-19 (473)
88 COG1521 Pantothenate kinase ty 70.2 7 0.00015 28.3 3.6 22 2-23 1-22 (251)
89 COG2410 Predicted nuclease (RN 70.1 11 0.00024 26.0 4.3 29 1-29 1-30 (178)
90 COG1548 Predicted transcriptio 70.1 2.9 6.3E-05 31.1 1.6 21 1-21 3-23 (330)
91 PRK13324 pantothenate kinase; 69.6 7.7 0.00017 28.0 3.7 20 3-22 2-21 (258)
92 PRK05082 N-acetylmannosamine k 68.4 6.1 0.00013 28.2 3.0 19 1-19 1-19 (291)
93 PRK12408 glucokinase; Provisio 66.8 4.7 0.0001 29.8 2.2 18 3-20 18-35 (336)
94 PLN02596 hexokinase-like 65.8 2.2 4.7E-05 33.8 0.2 17 3-19 98-114 (490)
95 KOG2517|consensus 65.4 6.6 0.00014 31.4 2.8 17 3-19 8-24 (516)
96 PRK10719 eutA reactivating fac 65.0 12 0.00027 29.6 4.2 15 3-17 8-22 (475)
97 TIGR00671 baf pantothenate kin 63.3 11 0.00023 26.9 3.3 19 4-22 2-20 (243)
98 TIGR00250 RNAse_H_YqgF RNAse H 62.9 6.3 0.00014 25.5 2.0 17 4-20 1-17 (130)
99 PF03309 Pan_kinase: Type III 62.4 15 0.00032 25.2 3.9 21 3-23 1-21 (206)
100 TIGR01174 ftsA cell division p 60.2 17 0.00038 26.9 4.1 25 3-27 2-29 (371)
101 PRK14101 bifunctional glucokin 59.9 7.4 0.00016 31.3 2.3 18 2-19 19-36 (638)
102 COG5026 Hexokinase [Carbohydra 59.6 9 0.00019 30.2 2.5 18 2-19 76-93 (466)
103 PTZ00107 hexokinase; Provision 58.6 11 0.00025 29.5 3.0 18 2-19 75-92 (464)
104 COG4819 EutA Ethanolamine util 58.2 11 0.00025 29.1 2.9 15 3-17 7-21 (473)
105 PRK09472 ftsA cell division pr 57.3 21 0.00045 27.3 4.2 26 2-27 9-37 (420)
106 PRK13311 N-acetyl-D-glucosamin 56.3 13 0.00028 26.1 2.8 18 2-19 1-18 (256)
107 PRK15080 ethanolamine utilizat 56.1 13 0.00028 26.6 2.8 18 2-19 25-42 (267)
108 TIGR01865 cas_Csn1 CRISPR-asso 55.8 12 0.00025 31.4 2.8 41 3-44 3-47 (805)
109 PTZ00288 glucokinase 1; Provis 55.8 13 0.00027 28.7 2.8 19 2-20 27-45 (405)
110 TIGR00228 ruvC crossover junct 55.6 9 0.00019 25.9 1.8 17 3-19 1-17 (156)
111 COG0554 GlpK Glycerol kinase [ 53.7 10 0.00022 30.2 2.0 19 2-20 6-24 (499)
112 COG1940 NagC Transcriptional r 53.6 23 0.00049 25.5 3.7 20 1-20 6-25 (314)
113 TIGR03285 methan_mark_14 putat 52.0 8.2 0.00018 29.9 1.2 11 2-12 194-204 (445)
114 PF01869 BcrAD_BadFG: BadF/Bad 51.4 26 0.00057 24.7 3.7 17 4-20 1-17 (271)
115 TIGR01175 pilM type IV pilus a 51.0 33 0.00072 24.9 4.3 18 2-19 4-21 (348)
116 PF00022 Actin: Actin; InterP 49.9 24 0.00051 26.1 3.4 45 2-54 5-54 (393)
117 PF01385 OrfB_IS605: Probable 49.9 10 0.00022 25.5 1.4 20 2-21 125-144 (227)
118 PF09887 DUF2114: Uncharacteri 49.9 9.1 0.0002 29.8 1.2 11 2-12 197-207 (448)
119 TIGR01319 glmL_fam conserved h 49.6 8.8 0.00019 30.3 1.1 14 6-19 1-14 (463)
120 PF06406 StbA: StbA protein; 49.5 31 0.00067 25.3 3.9 21 3-23 2-22 (318)
121 PF04312 DUF460: Protein of un 49.5 37 0.0008 22.6 3.9 26 2-27 33-58 (138)
122 PRK03011 butyrate kinase; Prov 49.0 24 0.00052 26.7 3.4 23 1-23 2-24 (358)
123 PRK13322 pantothenate kinase; 47.3 24 0.00053 25.1 3.0 18 3-20 2-19 (246)
124 PRK13310 N-acetyl-D-glucosamin 44.8 25 0.00054 25.2 2.8 17 3-19 2-18 (303)
125 COG1069 AraB Ribulose kinase [ 44.6 23 0.0005 28.6 2.7 18 3-20 5-22 (544)
126 PRK09557 fructokinase; Reviewe 44.4 25 0.00054 25.2 2.8 18 2-19 1-18 (301)
127 PF11399 DUF3192: Protein of u 44.4 7.8 0.00017 24.5 0.1 28 58-85 24-52 (102)
128 PRK13329 pantothenate kinase; 43.9 23 0.00049 25.4 2.4 19 1-19 1-19 (249)
129 COG3734 DgoK 2-keto-3-deoxy-ga 42.6 50 0.0011 24.8 4.0 21 1-21 5-25 (306)
130 PF05378 Hydant_A_N: Hydantoin 42.3 31 0.00068 23.3 2.8 18 4-21 2-19 (176)
131 COG0817 RuvC Holliday junction 41.8 13 0.00029 25.3 0.9 16 4-19 1-16 (160)
132 COG0849 ftsA Cell division ATP 41.2 56 0.0012 25.4 4.3 26 2-27 7-35 (418)
133 PRK13328 pantothenate kinase; 39.8 36 0.00079 24.4 3.0 21 1-21 1-21 (255)
134 PF07066 DUF3882: Lactococcus 39.1 46 0.00099 22.6 3.1 22 2-23 3-29 (159)
135 PF08735 DUF1786: Putative pyr 38.0 80 0.0017 23.1 4.5 26 2-27 168-193 (254)
136 KOG1369|consensus 37.4 40 0.00087 26.8 3.1 52 2-53 87-139 (474)
137 PRK09698 D-allose kinase; Prov 35.1 45 0.00098 23.8 2.9 18 2-19 5-22 (302)
138 TIGR00555 panK_eukar pantothen 35.1 85 0.0018 23.1 4.3 22 2-23 1-23 (279)
139 TIGR03123 one_C_unchar_1 proba 34.5 60 0.0013 24.3 3.5 24 3-26 130-153 (318)
140 PF01968 Hydantoinase_A: Hydan 34.2 67 0.0014 23.3 3.6 25 2-26 78-102 (290)
141 PF07151 DUF1391: Protein of u 31.2 88 0.0019 16.9 2.9 11 6-16 3-13 (49)
142 COG4065 Uncharacterized protei 31.0 25 0.00055 27.0 1.0 11 2-12 227-237 (480)
143 PRK13325 bifunctional biotin-- 30.7 59 0.0013 26.3 3.1 22 1-22 338-359 (592)
144 COG0145 HyuA N-methylhydantoin 30.0 70 0.0015 26.5 3.4 26 3-28 280-305 (674)
145 TIGR00749 glk glucokinase, pro 30.0 45 0.00098 24.2 2.2 17 4-20 1-17 (316)
146 PF14239 RRXRR: RRXRR protein 29.6 88 0.0019 21.6 3.4 20 2-21 52-71 (176)
147 TIGR03281 methan_mark_12 putat 29.5 55 0.0012 24.8 2.5 20 3-22 1-20 (326)
148 TIGR03739 PRTRC_D PRTRC system 29.4 79 0.0017 23.1 3.4 14 5-18 1-14 (320)
149 PF11104 PilM_2: Type IV pilus 27.9 1.2E+02 0.0026 22.2 4.1 25 3-27 182-206 (340)
150 PF07318 DUF1464: Protein of u 27.4 58 0.0013 24.8 2.4 19 5-23 1-20 (343)
151 COG0145 HyuA N-methylhydantoin 25.4 1.4E+02 0.0031 24.8 4.4 21 1-21 2-22 (674)
152 COG4012 Uncharacterized protei 24.9 1.5E+02 0.0032 22.4 4.0 26 2-27 228-253 (342)
153 TIGR00744 ROK_glcA_fam ROK fam 24.5 62 0.0013 23.2 2.1 19 4-22 1-20 (318)
154 COG4328 Predicted nuclease (RN 24.2 42 0.00092 24.4 1.1 11 1-11 1-11 (266)
155 COG2971 Predicted N-acetylgluc 24.1 93 0.002 23.3 2.9 19 1-19 5-23 (301)
156 PF00480 ROK: ROK family; Int 23.0 87 0.0019 20.2 2.4 15 5-19 1-15 (179)
157 PRK11509 hydrogenase-1 operon 22.3 37 0.00079 22.3 0.5 24 29-52 86-112 (132)
158 PF12565 DUF3747: Protein of u 21.3 2.8E+02 0.006 19.3 4.6 26 5-30 104-129 (181)
159 COG5277 Actin and related prot 21.2 1E+02 0.0022 24.1 2.8 54 3-56 8-64 (444)
160 KOG2912|consensus 20.4 32 0.00069 26.5 -0.1 12 5-16 106-117 (419)
161 TIGR01175 pilM type IV pilus a 20.3 2.2E+02 0.0048 20.6 4.3 24 3-26 190-213 (348)
No 1
>PRK11678 putative chaperone; Provisional
Probab=99.75 E-value=1.5e-18 Score=132.58 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=68.8
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc---------------------------------------
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT--------------------------------------- 42 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~--------------------------------------- 42 (91)
+++|||||||||+||+++++++++++++.+.+.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 36899999999999999999999999999999999999994
Q ss_pred --CCeeeeccchhhccccceeccc-CCCCccccccccCCCCCCCcee
Q psy3438 43 --DTERLIGLRKFWFAYFTTYQVD-LTGEPDQVCLSGLPDSDWLASE 86 (91)
Q Consensus 43 --~~~~~vG~~A~~~~~~~~~~~~-~~gr~~~s~k~~lg~~~~~~~~ 86 (91)
+++.+||.+|++ .|+.+ ..|++++|+||+||.+.+.+.+
T Consensus 81 ~~~~~~~~G~~A~~-----~~~~~p~~~r~i~s~Kr~lg~~~~~~~~ 122 (450)
T PRK11678 81 VTAQSVFFGLAALA-----QYLEDPEEVYFVKSPKSFLGASGLKPQQ 122 (450)
T ss_pred ccccccchhHHHHH-----hhccCCCCceEEecchhhhccCCCCccc
Confidence 446889999994 44443 6788999999999998887654
No 2
>KOG0100|consensus
Probab=99.69 E-value=2.2e-17 Score=125.43 Aligned_cols=55 Identities=71% Similarity=1.035 Sum_probs=53.3
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
++||||||||||||+++++|+++|+.|++|+|.+||+|+|++.+++||.+|+++.
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~ 91 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQL 91 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhccc
Confidence 5899999999999999999999999999999999999999988999999999987
No 3
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.65 E-value=1.9e-16 Score=124.53 Aligned_cols=74 Identities=45% Similarity=0.529 Sum_probs=61.8
Q ss_pred CC-eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCC
Q psy3438 1 MP-AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLP 78 (91)
Q Consensus 1 m~-~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg 78 (91)
|. ++|||||||||+||++++|++++++|..|++.+||+|+|. +++++||.+|+.++.- ...+.+..+||+||
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~~i~~~Kr~iG 74 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT------NPENTIFSIKRLMG 74 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhh------CchhhHHHHHHHhC
Confidence 53 8999999999999999999999999999999999999997 6789999999976421 22345567788888
Q ss_pred CC
Q psy3438 79 DS 80 (91)
Q Consensus 79 ~~ 80 (91)
.+
T Consensus 75 ~~ 76 (627)
T PRK00290 75 RR 76 (627)
T ss_pred CC
Confidence 65
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.64 E-value=3e-16 Score=124.11 Aligned_cols=74 Identities=57% Similarity=0.683 Sum_probs=60.4
Q ss_pred CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
+.++|||||||||+||+++++++++++|+.|++.+||+|+|.+++++||++|+.+..- ...+.+..+||+||.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 77 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAR------NPENTVFDAKRLIGRK 77 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhh------CcccEEhhhHHHhCCC
Confidence 4689999999999999999999999999999999999999998889999999976521 2223444556666653
No 5
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.64 E-value=3.6e-16 Score=123.03 Aligned_cols=73 Identities=29% Similarity=0.300 Sum_probs=60.9
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.+||||||||||+||++.+|++++++|..|++.+||+|+|.++.++||.+|+.++.. ...+.+.++||+||.+
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 92 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQ------DPKNTISSVKRFMGRS 92 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHh------CchhhHHHHHHHhCCC
Confidence 479999999999999999999999999999999999999987779999999976521 2234556677777764
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.64 E-value=5e-16 Score=123.13 Aligned_cols=73 Identities=38% Similarity=0.501 Sum_probs=60.1
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||+++++++++++|..|++.+||+|+|. +++++||.+|+.++.- ...+.+..+||+||.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 115 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVT------NPENTVFATKRLIGRR 115 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHh------CCcceehhhhhhcCCC
Confidence 48999999999999999999999999999999999999997 5689999999976421 2234455667777764
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.63 E-value=4.7e-16 Score=123.47 Aligned_cols=73 Identities=40% Similarity=0.407 Sum_probs=60.9
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||++++|++.+++|..|.+.+||+|+|. +++++||.+|++++.- ...+.+..+||+||.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KRliG~~ 76 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL------NPQNTFYNLKRFIGRR 76 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHh------CccceehHHhhhhCCC
Confidence 37999999999999999999999999999999999999997 5789999999976521 1234566777777764
No 8
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.63 E-value=5.1e-16 Score=122.84 Aligned_cols=73 Identities=40% Similarity=0.481 Sum_probs=60.6
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||++++|++.+++|..|++.+||+|+|. +++++||++|+.++.- ...+.+.++||+||.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 76 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT------NAENTVYSIKRFIGRR 76 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhh------CcccchHHHHHHhCCC
Confidence 37999999999999999999999999999999999999997 4589999999976521 2234556778888764
No 9
>CHL00094 dnaK heat shock protein 70
Probab=99.63 E-value=6.4e-16 Score=121.55 Aligned_cols=73 Identities=37% Similarity=0.410 Sum_probs=60.3
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||++++|++++++|..|.+.+||+|+|. +++++||++|++++.- ...+.+.++||+||.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 76 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI------NPENTFYSVKRFIGRK 76 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHh------CccceehhhHHhcCCC
Confidence 58999999999999999999999999999999999999997 4689999999976521 1234556677777764
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.63 E-value=4.2e-16 Score=123.63 Aligned_cols=73 Identities=38% Similarity=0.519 Sum_probs=60.9
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++||||||||||||+++++++++++|..|.+.+||+|+|.+++++||.+|++++.. ...+.+.++||+||.+
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~------~p~~ti~~~KRliG~~ 100 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAIT------NPQSTFYAVKRLIGRR 100 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhh------CchhHHHHHHHHhccc
Confidence 479999999999999999999999999999999999999998889999999976421 1224556677777764
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.62 E-value=4.3e-16 Score=122.25 Aligned_cols=72 Identities=29% Similarity=0.290 Sum_probs=59.7
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
+||||||||||+||++++|++++++|..|.+.+||+|+|. +++++||.+|+.+... ...+.+.++||+||.+
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~Kr~iG~~ 73 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAE------DPKNTISSVKRLMGRS 73 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhh------ChhhhHHHHHHHhCCC
Confidence 5899999999999999999999999999999999999997 4589999999976421 1234556677888764
No 12
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.62 E-value=6.9e-16 Score=122.54 Aligned_cols=73 Identities=37% Similarity=0.445 Sum_probs=59.8
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||++++|++++++|+.|++.+||+|+|. +++++||.+|++++.. ...+.+.++||+||.+
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~------~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVV------NPENTFFSVKRFIGRK 113 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhh------CchhhhHHHHHhhCCC
Confidence 47999999999999999999999999999999999999997 5689999999976521 1223455667777764
No 13
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.62 E-value=7.9e-16 Score=120.18 Aligned_cols=73 Identities=42% Similarity=0.497 Sum_probs=60.3
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhccccceecccCCCCccccccccCCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDS 80 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~~ 80 (91)
.++|||||||||+||++++|++++++|..|++.+||+|+|. ++++++|.+|+.++.. ...+.+..+||+||.+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~------~p~~~i~~~Kr~iG~~ 74 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVT------NPENTIYSIKRFMGRR 74 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhh------CchhhhHHHHHHhCCC
Confidence 47999999999999999999999999999999999999998 4589999999976421 2234556677777764
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.58 E-value=3.4e-15 Score=117.31 Aligned_cols=51 Identities=35% Similarity=0.504 Sum_probs=48.0
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccch
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRK 52 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A 52 (91)
.+|||||||||||||++.++++++++|..|++.+||+|+|.+++++||.+|
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A 70 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK 70 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh
Confidence 379999999999999999999999999999999999999987779999988
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.55 E-value=1.2e-14 Score=112.54 Aligned_cols=54 Identities=57% Similarity=0.791 Sum_probs=46.9
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
++|||||||||+||++.+++++++.+..|++.+||+|+|.+++++||..|....
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~ 54 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQM 54 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTT
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhc
Confidence 689999999999999999999999999999999999999988999999998654
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-14 Score=114.17 Aligned_cols=72 Identities=39% Similarity=0.414 Sum_probs=58.9
Q ss_pred CeEEEecccceEEEEEEeCC-eEEEEecCCCCeeeeEEEEEcC-CeeeeccchhhccccceecccCCCCccccccccCCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQG-KVEIIANDQGNRTTPSYVAFTD-TERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPD 79 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~-~~~il~~~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~~~~~~~~gr~~~s~k~~lg~ 79 (91)
.+|||||||||||||+++++ .+.++.|..+.+++||+|+|.. +++++|+.|++++.- ......-++||.||.
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~------~p~~t~~~~kr~~G~ 79 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD------NPENTIFSIKRKIGR 79 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhh------CCcceEEEEehhcCC
Confidence 47999999999999999988 7999999999999999999984 479999999986521 122344567777774
No 17
>KOG0102|consensus
Probab=99.34 E-value=1.2e-12 Score=101.74 Aligned_cols=55 Identities=60% Similarity=0.823 Sum_probs=52.2
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CCeeeeccchhhcc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGLRKFWFA 56 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~~~~vG~~A~~~~ 56 (91)
.++||||||||||+|++.++++.++.|.+|.+++||+|+|+ +++++||..|++++
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqa 83 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQA 83 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhh
Confidence 37999999999999999999999999999999999999997 77999999999988
No 18
>KOG0101|consensus
Probab=99.32 E-value=1.6e-12 Score=102.47 Aligned_cols=56 Identities=77% Similarity=1.006 Sum_probs=52.4
Q ss_pred CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
|..||||||||+|||+++.+++.+++.|+.|++++||+|+|.+.++++|.+|..+.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv 62 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQV 62 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhh
Confidence 57899999999999999999999999999999999999999988999998888766
No 19
>KOG0103|consensus
Probab=99.03 E-value=2.3e-10 Score=90.84 Aligned_cols=56 Identities=39% Similarity=0.633 Sum_probs=53.4
Q ss_pred CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
|.++|||||..||.||+.+.+.++++.|+.+++.+|++|+|..+++++|.+|..+.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~ 56 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQ 56 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccce
Confidence 88999999999999999999999999999999999999999999999999998766
No 20
>KOG0104|consensus
Probab=98.63 E-value=2.6e-08 Score=80.25 Aligned_cols=71 Identities=35% Similarity=0.488 Sum_probs=60.5
Q ss_pred CeEEEecccceEEEEEEeCCeE-EEEecCCCCeeeeEEEEEcCCeeeeccchhhcc-ccc----eecccCCCCcccc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKV-EIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA-YFT----TYQVDLTGEPDQV 72 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~-~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~-~~~----~~~~~~~gr~~~s 72 (91)
.+++||||+-|..|+++.+|-| +|+.|...+|.+|++|+|.+++|++|.+|...+ .|+ .++.+++|++...
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 4689999999999999998865 899999999999999999999999999999887 343 2456788876654
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.30 E-value=9.5e-07 Score=65.14 Aligned_cols=46 Identities=39% Similarity=0.439 Sum_probs=34.5
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC-e--eeeccchhhcc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-E--RLIGLRKFWFA 56 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~-~--~~vG~~A~~~~ 56 (91)
..+||||||+|++|. .+++. ++.++ ||+|++++. . ..||.+|+.+.
T Consensus 5 ~~~giDlGt~~~~i~--~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~ 53 (335)
T PRK13929 5 TEIGIDLGTANILVY--SKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMI 53 (335)
T ss_pred CeEEEEcccccEEEE--ECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhh
Confidence 358999999999864 45554 34454 999999732 2 68999999765
No 22
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.29 E-value=9.5e-07 Score=64.76 Aligned_cols=44 Identities=34% Similarity=0.436 Sum_probs=33.3
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC-----e--eeeccchhhc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-----E--RLIGLRKFWF 55 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~-----~--~~vG~~A~~~ 55 (91)
.+||||||+||+|+...++ .++. .||+|++.++ . .+||.+|+..
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~ 54 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--IVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEM 54 (333)
T ss_pred eeEEecCcceEEEEECCCC--EEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHh
Confidence 3899999999999875333 2332 5999999722 2 7899999876
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.11 E-value=3.4e-06 Score=61.98 Aligned_cols=45 Identities=38% Similarity=0.442 Sum_probs=34.5
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC-C-e-eeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD-T-E-RLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~-~-~-~~vG~~A~~~~ 56 (91)
-+||||||+|++|+.. ++..++. .||+|++.. + . ..+|++|++..
T Consensus 5 ~~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~ 52 (336)
T PRK13928 5 DIGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMV 52 (336)
T ss_pred eeEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhh
Confidence 3899999999999875 4444554 399999984 2 3 48999998764
No 24
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.11 E-value=4.8e-06 Score=61.99 Aligned_cols=43 Identities=40% Similarity=0.495 Sum_probs=34.7
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C---eeeeccchhh
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T---ERLIGLRKFW 54 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~---~~~vG~~A~~ 54 (91)
-+||||||.|+.|+.-..+ ++.++ ||+|++.. + -..||.+|++
T Consensus 8 diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~ 55 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQ 55 (342)
T ss_pred cceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHH
Confidence 5899999999999975333 66677 99999974 3 2789999996
No 25
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.04 E-value=3.8e-06 Score=62.42 Aligned_cols=44 Identities=36% Similarity=0.504 Sum_probs=31.2
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC---eeeeccchhhc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---ERLIGLRKFWF 55 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~---~~~vG~~A~~~ 55 (91)
-+||||||+|+.|+.-..| ++.++ ||+|+++.. -..+|++|+..
T Consensus 3 ~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m 49 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAM 49 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTT
T ss_pred ceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHH
Confidence 5899999999998753223 44445 999999843 36799999864
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.90 E-value=1.9e-05 Score=57.61 Aligned_cols=45 Identities=36% Similarity=0.412 Sum_probs=33.9
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C-eeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T-ERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~-~~~vG~~A~~~~ 56 (91)
.+||||||+|++++...++ .++ + +||+|++.+ + ..+||++|++..
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~ 57 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-N------EPSVVAIDTKTGKVLAVGEEAKEML 57 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-e------cCCEEEEECCCCeEEEEcHHHHHhh
Confidence 4899999999999886332 233 2 499999973 2 479999998654
No 27
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.78 E-value=4.7e-05 Score=55.64 Aligned_cols=45 Identities=33% Similarity=0.393 Sum_probs=32.9
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcC--C-eeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T-ERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~--~-~~~vG~~A~~~~ 56 (91)
.+||||||+|++++.. ++..++ .+||+|++.. + ..++|++|+++.
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~ 54 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQML 54 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHh
Confidence 5899999999998643 332233 2699999973 2 358999998764
No 28
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=93.84 E-value=0.082 Score=31.71 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=17.3
Q ss_pred CCeEEEecccceEEEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~ 19 (91)
|.++|||+|.|+..+|+.+
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred CcEEEEccCCCeEEEEEEC
Confidence 6789999999999999885
No 29
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.77 E-value=0.081 Score=36.92 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=16.3
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||+..+++++.
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 689999999999999873
No 30
>PRK10331 L-fuculokinase; Provisional
Probab=92.44 E-value=0.14 Score=39.32 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.0
Q ss_pred eEEEecccceEEEEEEe-CCe
Q psy3438 3 AIGIDLGTTYSCVAVFQ-QGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~-~~~ 22 (91)
++|||+|||++.+++++ +|+
T Consensus 4 ~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred EEEEecCCCceEEEEEcCCCc
Confidence 68999999999999986 443
No 31
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=92.27 E-value=0.22 Score=36.85 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=31.2
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-CC--------eeeeccchhh
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DT--------ERLIGLRKFW 54 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-~~--------~~~vG~~A~~ 54 (91)
..+.||+||.++.+....+..|. ..+||+|+.. ++ ..++|.+|..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~--------~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~ 55 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQ--------VVFPSIVGRPKDGKGMVGDAKDTFVGDEAQE 55 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCc--------EEccceeeEecccccccCCCcceEecchhhh
Confidence 47899999999998865443333 2348888775 21 3588998854
No 32
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=91.95 E-value=0.23 Score=36.79 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=30.7
Q ss_pred eEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~ 56 (91)
.+.||+||.++.++...+..+. ..+||+|+.. ....++|++|....
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~--------~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~ 56 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPR--------VVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR 56 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCc--------eEeeccceeecCcccccccCCCceEEchhhhhCC
Confidence 3789999999998875443232 2346776654 13578999887643
No 33
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.69 E-value=0.23 Score=38.64 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.3
Q ss_pred CeEEEecccceEEEEEEeCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~ 21 (91)
.++|||+|||+..+.+++..
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCC
Confidence 57899999999999988643
No 34
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=91.66 E-value=0.2 Score=39.32 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=16.4
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
+++|||+|||++.+++++
T Consensus 1 ~~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 1 HYIGVDVGTGSARACIID 18 (541)
T ss_pred CEEEEEecCcCEEEEEEc
Confidence 479999999999999986
No 35
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=91.56 E-value=0.22 Score=35.22 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.3
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
.+|||.|||++.++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g~ 21 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDGK 21 (248)
T ss_pred EEEEEcChhheEEEEEcCCE
Confidence 68999999999999987543
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=91.25 E-value=0.25 Score=36.52 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.2
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|..+|||.|+|.+.++++++++
T Consensus 32 m~~~GIDiGStt~K~Vlld~~~ 53 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCDGE 53 (293)
T ss_pred cEEEEEEeCchhEEEEEEeCCE
Confidence 6789999999999999988653
No 37
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=91.18 E-value=0.28 Score=32.07 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.2
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
|.++|||+|+..+-||+.+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 789999999999999998754
No 38
>PRK04123 ribulokinase; Provisional
Probab=91.04 E-value=0.29 Score=38.35 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=15.9
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||+|||++.+++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 68999999999999987
No 39
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=90.91 E-value=0.28 Score=38.04 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.1
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||++.+++++.
T Consensus 4 ~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEecCCCceEEEEECC
Confidence 689999999999999863
No 40
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=90.91 E-value=0.28 Score=38.39 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=16.6
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++|||+|||++.+++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 478999999999999998
No 41
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.78 E-value=0.28 Score=37.71 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=16.2
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||++.+++++.
T Consensus 3 ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINR 20 (465)
T ss_pred EEEEecCCCcEEEEEEcC
Confidence 689999999999999863
No 42
>PRK15027 xylulokinase; Provisional
Probab=90.77 E-value=0.25 Score=38.06 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=16.3
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||++.+++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 689999999999999864
No 43
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=90.49 E-value=0.25 Score=33.39 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.3
Q ss_pred CCeEEEecccceEEEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~ 19 (91)
|.++|||.|++++-+++.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7789999999999999875
No 44
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=90.02 E-value=0.028 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
+||+|+||+|++++..++
T Consensus 59 ~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 59 ILGTGLGTNNAIREEREK 76 (213)
T ss_pred eeccCCCcchHHHHHHhc
Confidence 689999999999987654
No 45
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=89.88 E-value=0.29 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=16.1
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||++.+++++.
T Consensus 5 ~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDL 22 (520)
T ss_pred EEEEecCCCceEEEEECC
Confidence 689999999999999863
No 46
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=89.38 E-value=0.39 Score=37.21 Aligned_cols=18 Identities=39% Similarity=0.765 Sum_probs=16.1
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++|||+|||++.+++++.
T Consensus 2 ~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred EEEEeccccceEEEEEcC
Confidence 689999999999999853
No 47
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=89.28 E-value=0.9 Score=30.10 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.0
Q ss_pred CeEEEecccceEEEEEEe--CCeEEEE
Q psy3438 2 PAIGIDLGTTYSCVAVFQ--QGKVEII 26 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~--~~~~~il 26 (91)
.++|||.|++|+-+|+.+ ++++.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE
Confidence 379999999999999864 4454443
No 48
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.22 E-value=1 Score=28.48 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=16.9
Q ss_pred eEEEecccceEEEEEEeCCeE
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKV 23 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~ 23 (91)
+++||+|++.+++++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 579999999999999887543
No 49
>PRK00047 glpK glycerol kinase; Provisional
Probab=89.07 E-value=0.44 Score=36.88 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=15.7
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||+|||++.+++++
T Consensus 7 ~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 7 ILALDQGTTSSRAIIFD 23 (498)
T ss_pred EEEEecCCCceEEEEEC
Confidence 68999999999999986
No 50
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=88.81 E-value=0.48 Score=36.62 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=16.2
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++|||+|||+..+++++
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 378999999999999986
No 51
>PLN02295 glycerol kinase
Probab=88.73 E-value=0.48 Score=36.86 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.8
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||+|||++.+++++
T Consensus 2 vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYD 18 (512)
T ss_pred EEEEecCCCceEEEEEC
Confidence 68999999999999986
No 52
>PTZ00280 Actin-related protein 3; Provisional
Probab=88.18 E-value=0.96 Score=34.26 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=30.7
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc-------------CCeeeeccchhhc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-------------DTERLIGLRKFWF 55 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~-------------~~~~~vG~~A~~~ 55 (91)
..|.||+|+.++.++...+..|.+ .+||+|... +.+.++|++|...
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 63 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTY--------IIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA 63 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCE--------EecceeEEeccccccccccccccCCEEEcchhhhC
Confidence 468999999999998754333432 346666543 1146789988654
No 53
>PRK13321 pantothenate kinase; Reviewed
Probab=85.65 E-value=1.3 Score=31.54 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.7
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
+++||+|.|+..++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998653
No 54
>PRK13318 pantothenate kinase; Reviewed
Probab=85.43 E-value=1.3 Score=31.49 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=17.8
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
+++||+|.|+..++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 55
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=85.12 E-value=1.2 Score=29.21 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.8
Q ss_pred CCeEEEecccceEEEEEEeC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~ 20 (91)
|.++|||+|+-.+-+|+.+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC
Confidence 67899999999999998764
No 56
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=84.37 E-value=2.8 Score=27.69 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=16.7
Q ss_pred eEEEecccceEEEEEEe--CCeEEEE
Q psy3438 3 AIGIDLGTTYSCVAVFQ--QGKVEII 26 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~--~~~~~il 26 (91)
++|||-|++++-.|+.+ +++...+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 68999999999999874 4454444
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=82.16 E-value=2.1 Score=32.96 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.5
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|..+|||-|+|.+.+.+++++.
T Consensus 135 ~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred cEEEEEecCCcceeEEEEeCCC
Confidence 5689999999999999988775
No 58
>PRK00292 glk glucokinase; Provisional
Probab=81.30 E-value=2 Score=31.24 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=17.1
Q ss_pred CC-eEEEecccceEEEEEEe
Q psy3438 1 MP-AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~-~iGIDfGTtns~va~~~ 19 (91)
|+ ++|||+|.|+..+++++
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCD 20 (316)
T ss_pred CceEEEEEcCccceEEEEEe
Confidence 55 78999999999999986
No 59
>PLN02669 xylulokinase
Probab=81.19 E-value=1.7 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=16.1
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.+||||+||++..+.+++
T Consensus 9 ~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLD 26 (556)
T ss_pred eEEEEecccCCeEEEEEc
Confidence 378999999999999886
No 60
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=81.01 E-value=1.9 Score=30.12 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.6
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.+++||||.||..|+.++
T Consensus 64 ~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEEEESSSSEEEEEEE
T ss_pred eEEEEeecCcEEEEEEEE
Confidence 368999999999999864
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=80.70 E-value=3.1 Score=30.34 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.3
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
..+|||.|+|.+.+.+++
T Consensus 2 ~~~GIDiGStttK~Vlid 19 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFE 19 (262)
T ss_pred eEEEEEcCcccEEEEEEe
Confidence 368999999999999987
No 62
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=80.13 E-value=2.3 Score=28.30 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.7
Q ss_pred CCeEEEecccceEEEEEEeC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~ 20 (91)
|.++|+|+||--+-||+-+.
T Consensus 2 ~~ilalD~G~KrIGvA~sd~ 21 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI 21 (141)
T ss_pred ceEEEEecCCceEEEEEecC
Confidence 67899999999999998754
No 63
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=79.92 E-value=0.95 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.4
Q ss_pred EEEecccceEEEEEEe
Q psy3438 4 IGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 4 iGIDfGTtns~va~~~ 19 (91)
+|||+|||++.+++++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999875
No 64
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=79.47 E-value=3.1 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=18.1
Q ss_pred eEEEecccceEEEEEEe---CCeEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ---QGKVEIIA 27 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~---~~~~~il~ 27 (91)
++|||+||++.++.+.+ ++++.++-
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g 28 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIG 28 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 47999999999877652 34566653
No 65
>PRK13331 pantothenate kinase; Reviewed
Probab=79.12 E-value=3 Score=30.18 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.4
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|..+.||.|+||..++++++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5679999999999999998755
No 66
>PTZ00004 actin-2; Provisional
Probab=79.03 E-value=3.7 Score=30.77 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=29.3
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhh
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFW 54 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 54 (91)
..+-||+|+.++.+....+..|. ..+||++... +...++|++|..
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~ 61 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPR--------CVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQD 61 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCC--------EEccceeEEecccccccCcCCCceEECchhhc
Confidence 46899999999999875433332 2346666543 124678888754
No 67
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=78.81 E-value=5 Score=26.75 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred CCeEEEecccceEEEEEEe--CCeEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ--QGKVEIIA 27 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~--~~~~~il~ 27 (91)
|.+++||.|+-|...++.+ ++.+.++.
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~~ 29 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVID 29 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEEE
Confidence 7899999999999999876 33344443
No 68
>PRK13317 pantothenate kinase; Provisional
Probab=78.44 E-value=4.2 Score=29.66 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.5
Q ss_pred CeEEEecccceEEEEEEeCCe
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~ 22 (91)
..+|||.|.|...+++.+++.
T Consensus 3 ~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred ceEEEEeCcccEEEEEEcCCC
Confidence 468999999999999876543
No 69
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=78.31 E-value=2.5 Score=32.74 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.9
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
+..+|||.|+|.+.+.+.+++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred CEEEEEEcChhheeeEEEcCC
Confidence 357999999999999988765
No 70
>PTZ00452 actin; Provisional
Probab=77.91 E-value=4.7 Score=30.33 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=29.7
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhh
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFW 54 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 54 (91)
+.+-||+|+.++.++...+..|.+ .+||+|... +.+.++|.+|..
T Consensus 6 ~~vViD~Gs~~~k~G~age~~P~~--------i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~ 60 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDDAPTS--------CFPAIVGRSKQNDGIFSTFNKEYYVGEEAQA 60 (375)
T ss_pred CEEEEECCCCeEEEeeCCCCCcCE--------EecceeEEECCccccccccccceEEChhhhc
Confidence 468899999999998864444433 335555442 124678988764
No 71
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=77.31 E-value=7.6 Score=28.92 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=16.1
Q ss_pred CCeEEEecccceEEEEEE
Q psy3438 1 MPAIGIDLGTTYSCVAVF 18 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~ 18 (91)
|.++|||+|..|...+.-
T Consensus 2 ~~v~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIN 19 (344)
T ss_pred ceEEEEeccCCeEEEEec
Confidence 788999999999998764
No 72
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=77.06 E-value=1.5 Score=33.49 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.8
Q ss_pred EEEecccceEEEEEEe
Q psy3438 4 IGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 4 iGIDfGTtns~va~~~ 19 (91)
+|||+|||+..+++++
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 6999999999999986
No 73
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=76.64 E-value=2.8 Score=32.65 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=17.4
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
++|||.|+|.+.+.++++++
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 68999999999999987653
No 74
>PRK00976 hypothetical protein; Provisional
Probab=76.49 E-value=4.3 Score=30.57 Aligned_cols=27 Identities=41% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCeEEEecccceEEEEEEeCCeEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKVEIIA 27 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~~il~ 27 (91)
|.++|||=|||-...|+.+++.....+
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~~~~~f~ 27 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGGKKSIFK 27 (326)
T ss_pred CeEEeecCCCccEEEEEEcCCceeEEE
Confidence 889999999999999988655444443
No 75
>PRK13326 pantothenate kinase; Reviewed
Probab=75.74 E-value=4.3 Score=29.37 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.3
Q ss_pred CeEEEecccceEEEEEEeCCe
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~ 22 (91)
+.+.||.|+||..++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 467899999999999998765
No 76
>PRK13320 pantothenate kinase; Reviewed
Probab=75.61 E-value=4.5 Score=28.84 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.0
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|+.+.||.|+|+..++++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 4578999999999999998764
No 77
>PTZ00466 actin-like protein; Provisional
Probab=74.96 E-value=5.1 Score=30.23 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=30.1
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhhc
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFWF 55 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~~ 55 (91)
..|-||+|+.++.++...+..|.+ .+||+|... .+..+||++|...
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~--------~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~ 68 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNL--------VFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEY 68 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCE--------eccceeeeecCccccccCCCCCeEECchhhhh
Confidence 468899999999988764443432 345655442 2246789888653
No 78
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.85 E-value=3.4 Score=30.62 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|+.+|||-|||-...|++++.+
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~ 24 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEK 24 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCC
Confidence 7789999999999999987543
No 79
>PF13941 MutL: MutL protein
Probab=74.78 E-value=4.4 Score=31.84 Aligned_cols=25 Identities=32% Similarity=0.741 Sum_probs=21.0
Q ss_pred eEEEecccceEEEEEEe--CCeEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ--QGKVEIIA 27 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~--~~~~~il~ 27 (91)
++-+|||+|++.+.+++ .++.+++-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig 28 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG 28 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE
Confidence 67899999999999988 67676664
No 80
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=73.25 E-value=4.5 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=16.1
Q ss_pred eEEEecccceEEEEEEe-CCeE
Q psy3438 3 AIGIDLGTTYSCVAVFQ-QGKV 23 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~-~~~~ 23 (91)
.+|+||||++.+.-+.+ +++|
T Consensus 31 ~vGVDLGT~~iV~~vlD~d~~P 52 (277)
T COG4820 31 WVGVDLGTCDIVSMVLDRDGQP 52 (277)
T ss_pred EEEeecccceEEEEEEcCCCCe
Confidence 58999999999877664 4554
No 81
>PTZ00281 actin; Provisional
Probab=73.00 E-value=5.9 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=29.1
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEc----------CCeeeeccchhh
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT----------DTERLIGLRKFW 54 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~----------~~~~~vG~~A~~ 54 (91)
..+-||+|+.++.++...+..|. ..+||+|... +...++|++|..
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~--------~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~ 61 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCC--------eeccccceeecCcccccCcccCCeEECchhhc
Confidence 46889999999999876444443 2345555432 124678888754
No 82
>PLN02405 hexokinase
Probab=72.69 E-value=1.2 Score=35.14 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred eEEEecccceEEEEEEe-CC-eEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQ-QG-KVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~-~~-~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
+++||||.||..|+.++ +| +...+........+|.-+.-..++-++..-|...+
T Consensus 97 flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~ 152 (497)
T PLN02405 97 FYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALA 152 (497)
T ss_pred EEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHH
Confidence 68999999999999764 22 11122222224445555543333456666565443
No 83
>PLN02362 hexokinase
Probab=72.68 E-value=1.6 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.7
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.+++||||.||..|+.++
T Consensus 96 ~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred eEEEEecCCceEEEEEEE
Confidence 368999999999999874
No 84
>PLN02914 hexokinase
Probab=72.47 E-value=1.3 Score=35.06 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEEEecccceEEEEEEe-CC-eEEEEecCCCCeeeeEEEEEcCCeeeeccchhhc
Q psy3438 3 AIGIDLGTTYSCVAVFQ-QG-KVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWF 55 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~-~~-~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~ 55 (91)
+++||||.||..|+.++ ++ +..++........+|--+....++-++..-|...
T Consensus 97 fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i 151 (490)
T PLN02914 97 FYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGL 151 (490)
T ss_pred EEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHH
Confidence 68999999999999874 22 1112222223334444443323334555555443
No 85
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=71.93 E-value=6 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCCeeeeccchhhcc
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~~~~ 56 (91)
|--++||+|||.-.+++++-..-+++. ..+..|.|+.+|.+-+.+.
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~----------~~s~~NpQ~~~GaDViSRI 46 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLA----------TASFLNPQRAYGADVISRI 46 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEE----------EEEEE-GGGGT-SSHHHHH
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEE----------eecccCCCCCcchHHHHHH
Confidence 346899999999999988632222221 2233355666777665544
No 86
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=71.74 E-value=9.5 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.9
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
++|||.|.....+++.+...
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999886544
No 87
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=70.80 E-value=14 Score=29.34 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=13.1
Q ss_pred CeEEEecccceEEEEE
Q psy3438 2 PAIGIDLGTTYSCVAV 17 (91)
Q Consensus 2 ~~iGIDfGTtns~va~ 17 (91)
.-+|||+|||.+.+-+
T Consensus 4 ~SVGIDIGTSTTQlvf 19 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVF 19 (473)
T ss_pred EEEEEeecCCceeEEE
Confidence 3589999999998754
No 88
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=70.21 E-value=7 Score=28.34 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.3
Q ss_pred CeEEEecccceEEEEEEeCCeE
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKV 23 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~ 23 (91)
+.+.||.|+|+...|++++++.
T Consensus 1 ~~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 1 MLLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred CeEEEEeCCCeEEEEEecCCeE
Confidence 3689999999999999876543
No 89
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=70.13 E-value=11 Score=26.02 Aligned_cols=29 Identities=41% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCeEEEecccce-EEEEEEeCCeEEEEecC
Q psy3438 1 MPAIGIDLGTTY-SCVAVFQQGKVEIIAND 29 (91)
Q Consensus 1 m~~iGIDfGTtn-s~va~~~~~~~~il~~~ 29 (91)
|.+.|||+|--- +++|++.+++.+++...
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~ 30 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAW 30 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEcc
Confidence 788999998644 37888889999888643
No 90
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=70.11 E-value=2.9 Score=31.09 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.7
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
|.++|||.|..|+.+|..++.
T Consensus 3 ~kilGiDIGGAntk~a~~DG~ 23 (330)
T COG1548 3 MKILGIDIGGANTKIASSDGD 23 (330)
T ss_pred ceEEEeeccCccchhhhccCC
Confidence 678999999999999985433
No 91
>PRK13324 pantothenate kinase; Reviewed
Probab=69.55 E-value=7.7 Score=28.03 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.7
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
.+.||.|+||..++++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998654
No 92
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=68.39 E-value=6.1 Score=28.16 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.6
Q ss_pred CCeEEEecccceEEEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~ 19 (91)
|+++|||+|.++..+++.+
T Consensus 1 ~~~lgvdig~~~i~~~l~d 19 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALVG 19 (291)
T ss_pred CcEEEEEECCCEEEEEEEc
Confidence 7899999999999999876
No 93
>PRK12408 glucokinase; Provisional
Probab=66.77 E-value=4.7 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=16.3
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
++++|+|-||+.+++++.
T Consensus 18 ~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 18 FVAADVGGTHVRVALVCA 35 (336)
T ss_pred EEEEEcChhhhheeEEec
Confidence 789999999999999863
No 94
>PLN02596 hexokinase-like
Probab=65.81 E-value=2.2 Score=33.77 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=15.2
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++.||||.||..|+.++
T Consensus 98 yLAlDlGGTNfRV~~V~ 114 (490)
T PLN02596 98 YYGLNLRGSNFLLLRAR 114 (490)
T ss_pred EEEEeeCCceEEEEEEE
Confidence 68999999999999864
No 95
>KOG2517|consensus
Probab=65.37 E-value=6.6 Score=31.39 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=15.6
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||.|||.+..++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 67999999999999986
No 96
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=65.03 E-value=12 Score=29.57 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=12.6
Q ss_pred eEEEecccceEEEEE
Q psy3438 3 AIGIDLGTTYSCVAV 17 (91)
Q Consensus 3 ~iGIDfGTtns~va~ 17 (91)
-+|||.|||.+.+-+
T Consensus 8 SVGIDIGTsTTqlvf 22 (475)
T PRK10719 8 SVGIDIGTTTTQVIF 22 (475)
T ss_pred EEEEeccCceEEEEE
Confidence 479999999998754
No 97
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=63.29 E-value=11 Score=26.91 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEecccceEEEEEEeCCe
Q psy3438 4 IGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 4 iGIDfGTtns~va~~~~~~ 22 (91)
+.||.|+||..++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998765
No 98
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=62.95 E-value=6.3 Score=25.49 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.9
Q ss_pred EEEecccceEEEEEEeC
Q psy3438 4 IGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 4 iGIDfGTtns~va~~~~ 20 (91)
+|||+|+..+-+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998754
No 99
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=62.45 E-value=15 Score=25.20 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=16.8
Q ss_pred eEEEecccceEEEEEEeCCeE
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKV 23 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~ 23 (91)
++-||.|+|+..++++++++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999977643
No 100
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=60.18 E-value=17 Score=26.94 Aligned_cols=25 Identities=36% Similarity=0.803 Sum_probs=17.9
Q ss_pred eEEEecccceEEEEEEe--C-CeEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ--Q-GKVEIIA 27 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~--~-~~~~il~ 27 (91)
++|||+||++.++.+.+ + +++.++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~ 29 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIG 29 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 68999999999987653 3 3355543
No 101
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=59.92 E-value=7.4 Score=31.27 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=16.3
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
+++|||+|.||..+++++
T Consensus 19 ~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 19 PRLLADVGGTNARFALET 36 (638)
T ss_pred CEEEEEcCchhheeeeec
Confidence 479999999999999985
No 102
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=59.61 E-value=9 Score=30.20 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.5
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++.||||.||-.|+.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 368999999999999864
No 103
>PTZ00107 hexokinase; Provisional
Probab=58.56 E-value=11 Score=29.52 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.7
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++.||||.||..|+.++
T Consensus 75 ~fLAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVS 92 (464)
T ss_pred eEEEEecCCceEEEEEEE
Confidence 368999999999999874
No 104
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=58.21 E-value=11 Score=29.07 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.4
Q ss_pred eEEEecccceEEEEE
Q psy3438 3 AIGIDLGTTYSCVAV 17 (91)
Q Consensus 3 ~iGIDfGTtns~va~ 17 (91)
-+|||+|||.+.|-+
T Consensus 7 SVGIDiGTsTTQvif 21 (473)
T COG4819 7 SVGIDIGTSTTQVIF 21 (473)
T ss_pred eeeeeccCceeeeee
Confidence 479999999987754
No 105
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=57.32 E-value=21 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=18.1
Q ss_pred CeEEEecccceEEEEEEe---CCeEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ---QGKVEIIA 27 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~---~~~~~il~ 27 (91)
.++|||+||+..++.+.+ +++++++-
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g 37 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIG 37 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEE
Confidence 367999999999876532 45565553
No 106
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=56.29 E-value=13 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=16.1
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
+++|||+|.|+..+++++
T Consensus 1 ~~lgidiggt~i~~~l~d 18 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFD 18 (256)
T ss_pred CEEEEEECCCcEEEEEEC
Confidence 369999999999999986
No 107
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=56.12 E-value=13 Score=26.59 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=14.4
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++|||+||+..++-+.+
T Consensus 25 ~~~~iDiGSssi~~vv~~ 42 (267)
T PRK15080 25 LKVGVDLGTANIVLAVLD 42 (267)
T ss_pred EEEEEEccCceEEEEEEc
Confidence 368999999999876653
No 108
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=55.84 E-value=12 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred eEEEecccceEEEEEEeCCe----EEEEecCCCCeeeeEEEEEcCC
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK----VEIIANDQGNRTTPSYVAFTDT 44 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~----~~il~~~~g~~~~PS~V~~~~~ 44 (91)
+||+|+||+..-+|+++... +..+. ..|-+.++....+.++
T Consensus 3 ~LGLDiGt~SvGWAVv~~d~~~~~~~~~~-~~gvr~~~~~~~~k~g 47 (805)
T TIGR01865 3 ILGLDIGIASVGWAIVEDDYKVPAAKRLI-DGGVRNFTGAELPKTG 47 (805)
T ss_pred eeEEeecccceeEEEEecccccccccccc-cCCeEeCcccccCCCc
Confidence 68999999999999986331 22221 2444555555555444
No 109
>PTZ00288 glucokinase 1; Provisional
Probab=55.83 E-value=13 Score=28.75 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6
Q ss_pred CeEEEecccceEEEEEEeC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~ 20 (91)
.++|+|.|-||+.+++.+.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 4789999999999999853
No 110
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=55.62 E-value=9 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.3
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||-|+..+-.++.+
T Consensus 1 ILGIDPGl~~tG~gvi~ 17 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIR 17 (156)
T ss_pred CEeECcccccccEEEEE
Confidence 58999999999999875
No 111
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=53.74 E-value=10 Score=30.19 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=15.9
Q ss_pred CeEEEecccceEEEEEEeC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~ 20 (91)
.++.||-|||+|.+.+++.
T Consensus 6 yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 6 YILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred EEEEEecCCcceeEEEECC
Confidence 4679999999999888753
No 112
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=53.57 E-value=23 Score=25.48 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.5
Q ss_pred CCeEEEecccceEEEEEEeC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~ 20 (91)
|.++|||+|.|+..+++.+.
T Consensus 6 ~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred cEEEEEEecCCEEEEEEECC
Confidence 56899999999999998863
No 113
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=52.02 E-value=8.2 Score=29.92 Aligned_cols=11 Identities=64% Similarity=1.053 Sum_probs=9.3
Q ss_pred CeEEEecccce
Q psy3438 2 PAIGIDLGTTY 12 (91)
Q Consensus 2 ~~iGIDfGTtn 12 (91)
+++.||||||=
T Consensus 194 PciSiDFGTTL 204 (445)
T TIGR03285 194 PCISIDFGTTL 204 (445)
T ss_pred ceEEeeccccc
Confidence 57899999983
No 114
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=51.44 E-value=26 Score=24.66 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.2
Q ss_pred EEEecccceEEEEEEeC
Q psy3438 4 IGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 4 iGIDfGTtns~va~~~~ 20 (91)
+|||-|.|.+.+.+++.
T Consensus 1 lGIDgGgTkt~~vl~d~ 17 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE 17 (271)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred CEEeeChheeeeEEEeC
Confidence 79999999999998864
No 115
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=50.99 E-value=33 Score=24.93 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.4
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++|||+|++.-+++...
T Consensus 4 ~~vgiDIg~~~Ik~v~~~ 21 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLK 21 (348)
T ss_pred cEEEEEeccCeEEEEEEE
Confidence 378999999999988764
No 116
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=49.93 E-value=24 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=30.7
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEecCCCCeeeeEEEEEcCC-----eeeeccchhh
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-----ERLIGLRKFW 54 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~~~~g~~~~PS~V~~~~~-----~~~vG~~A~~ 54 (91)
..+-||+|+.+..++...+..|. ..+||++..... ...+|..+..
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~--------~v~ps~~~~~~~~~~~~~~~~g~~~~~ 54 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPR--------VVIPSVVGRPRDKNSSNDYYVGDEALS 54 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-S--------EEEESEEEEESSSSSSSSCEETHHHHH
T ss_pred CEEEEECCCceEEEEECCCCCCC--------CcCCCccccccccccceeEEeeccccc
Confidence 57889999999999875333332 346888876522 4688988654
No 117
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.88 E-value=10 Score=25.50 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=14.8
Q ss_pred CeEEEecccceEEEEEEeCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~ 21 (91)
.++|||+|..+..++...++
T Consensus 125 ~~vgVDlGi~~~a~~~~~~~ 144 (227)
T PF01385_consen 125 KVVGVDLGIKNLATVSSGDG 144 (227)
T ss_pred eeeeeccccceeeccccccc
Confidence 36899999999877654443
No 118
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=49.86 E-value=9.1 Score=29.77 Aligned_cols=11 Identities=64% Similarity=1.053 Sum_probs=9.3
Q ss_pred CeEEEecccce
Q psy3438 2 PAIGIDLGTTY 12 (91)
Q Consensus 2 ~~iGIDfGTtn 12 (91)
+++.||||||=
T Consensus 197 PciSiDFGTTL 207 (448)
T PF09887_consen 197 PCISIDFGTTL 207 (448)
T ss_pred ceeEeeccccc
Confidence 57899999983
No 119
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=49.57 E-value=8.8 Score=30.30 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=12.6
Q ss_pred EecccceEEEEEEe
Q psy3438 6 IDLGTTYSCVAVFQ 19 (91)
Q Consensus 6 IDfGTtns~va~~~ 19 (91)
+|||+|++.+..++
T Consensus 1 ~DiGST~Tk~~a~~ 14 (463)
T TIGR01319 1 LDFGSTWTKAAAFD 14 (463)
T ss_pred CCccccceEEEEEe
Confidence 69999999999885
No 120
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=49.52 E-value=31 Score=25.30 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=16.0
Q ss_pred eEEEecccceEEEEEEeCCeE
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKV 23 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~ 23 (91)
-|+||-|.+|..+++.++|+.
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~ 22 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKI 22 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-E
T ss_pred eEEEecCCCceeEEEecCCeE
Confidence 589999999999999988753
No 121
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=49.48 E-value=37 Score=22.60 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=17.6
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIA 27 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~ 27 (91)
.++|||-|||--..++--+|++-.+.
T Consensus 33 lIVGiDPG~ttgiAildL~G~~l~l~ 58 (138)
T PF04312_consen 33 LIVGIDPGTTTGIAILDLDGELLDLK 58 (138)
T ss_pred EEEEECCCceeEEEEEecCCcEEEEE
Confidence 47899999997755543367664443
No 122
>PRK03011 butyrate kinase; Provisional
Probab=49.02 E-value=24 Score=26.67 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.8
Q ss_pred CCeEEEecccceEEEEEEeCCeE
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGKV 23 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~~ 23 (91)
|.++.|..|+|.+.+|++++.+.
T Consensus 2 ~~il~inpgststk~a~~~~~~~ 24 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKP 24 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCce
Confidence 56789999999999999977654
No 123
>PRK13322 pantothenate kinase; Reviewed
Probab=47.27 E-value=24 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.4
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
.+-||.|+|+..++++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 688999999999999975
No 124
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=44.78 E-value=25 Score=25.16 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.6
Q ss_pred eEEEecccceEEEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~ 19 (91)
++|||+|.|+..+++++
T Consensus 2 ~lgidig~t~i~~~l~d 18 (303)
T PRK13310 2 YYGFDIGGTKIELGVFN 18 (303)
T ss_pred eEEEEeCCCcEEEEEEC
Confidence 58999999999999986
No 125
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=44.58 E-value=23 Score=28.56 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=15.8
Q ss_pred eEEEecccceEEEEEEeC
Q psy3438 3 AIGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~ 20 (91)
.||+||||..-.+.+++-
T Consensus 5 ~iGvDvGTgSaRA~v~D~ 22 (544)
T COG1069 5 VIGVDVGTGSARAGVFDC 22 (544)
T ss_pred EEEEeecCCceeEEEEEc
Confidence 589999999999998863
No 126
>PRK09557 fructokinase; Reviewed
Probab=44.43 E-value=25 Score=25.17 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=16.0
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
..+|||+|.|+..+++++
T Consensus 1 ~~lgidig~t~~~~~l~d 18 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALD 18 (301)
T ss_pred CEEEEEECCCcEEEEEEC
Confidence 368999999999999986
No 127
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.40 E-value=7.8 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=21.0
Q ss_pred cceeccc-CCCCccccccccCCCCCCCce
Q psy3438 58 FTTYQVD-LTGEPDQVCLSGLPDSDWLAS 85 (91)
Q Consensus 58 ~~~~~~~-~~gr~~~s~k~~lg~~~~~~~ 85 (91)
+++.+.+ .+|-..+++...||.|+|.+.
T Consensus 24 Nr~~i~~L~lg~s~~~V~~~lG~pdfsEa 52 (102)
T PF11399_consen 24 NRQNIAKLSLGMSKDQVIALLGTPDFSEA 52 (102)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCCchhh
Confidence 3555554 566788899999999999763
No 128
>PRK13329 pantothenate kinase; Reviewed
Probab=43.93 E-value=23 Score=25.39 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCeEEEecccceEEEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~ 19 (91)
|+.+-||.|+|...+++++
T Consensus 1 ~m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 1 MTFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CCEEEEEcCcchheeeEec
Confidence 6789999999999999987
No 129
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=42.55 E-value=50 Score=24.79 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=17.4
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
|.+|.||-||||..+-++++.
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred ceEEEEecCCccEEEEEEcCC
Confidence 467899999999998887543
No 130
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=42.31 E-value=31 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=14.6
Q ss_pred EEEecccceEEEEEEeCC
Q psy3438 4 IGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 4 iGIDfGTtns~va~~~~~ 21 (91)
||||-|.||+=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999976666554
No 131
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=41.75 E-value=13 Score=25.28 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=14.4
Q ss_pred EEEecccceEEEEEEe
Q psy3438 4 IGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 4 iGIDfGTtns~va~~~ 19 (91)
+|||-|+..+-.++++
T Consensus 1 lGIDPGl~~~G~gvI~ 16 (160)
T COG0817 1 LGIDPGLRRTGYGVIE 16 (160)
T ss_pred CCcCCCccccceEEEE
Confidence 5999999999999875
No 132
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=41.18 E-value=56 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=18.2
Q ss_pred CeEEEecccceEEEEEE--eCC-eEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVF--QQG-KVEIIA 27 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~--~~~-~~~il~ 27 (91)
.++|+|+||+..++-+- .++ +.+++-
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig 35 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG 35 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe
Confidence 37899999999887653 333 455553
No 133
>PRK13328 pantothenate kinase; Reviewed
Probab=39.83 E-value=36 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.5
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
|+.+-||.|+|...+++++++
T Consensus 1 ~M~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 1 AMILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred CcEEEEEeCccceeEEEEcCC
Confidence 678999999999999988744
No 134
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=39.08 E-value=46 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.5
Q ss_pred CeEEEecccce-----EEEEEEeCCeE
Q psy3438 2 PAIGIDLGTTY-----SCVAVFQQGKV 23 (91)
Q Consensus 2 ~~iGIDfGTtn-----s~va~~~~~~~ 23 (91)
.++.|||-||+ +-.|+.++++.
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred eeEEEEEecccCCCCCceeEEecCCeE
Confidence 36899999998 88888866543
No 135
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=37.96 E-value=80 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.4
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIA 27 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~ 27 (91)
.++.||.|++.+.++.+.++++.-+-
T Consensus 168 ~~~~vniGN~HTlaa~v~~~rI~Gvf 193 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALVKDGRIYGVF 193 (254)
T ss_pred CeEEEEeCCccEEEEEEeCCEEEEEE
Confidence 46899999999999988888775554
No 136
>KOG1369|consensus
Probab=37.36 E-value=40 Score=26.76 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=27.4
Q ss_pred CeEEEecccceEEEEEEe-CCeEEEEecCCCCeeeeEEEEEcCCeeeeccchh
Q psy3438 2 PAIGIDLGTTYSCVAVFQ-QGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKF 53 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~-~~~~~il~~~~g~~~~PS~V~~~~~~~~vG~~A~ 53 (91)
.+++||||.||-.|..+. ++.-+.+...+....+|..+....++.++..-|.
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~ 139 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIAR 139 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHcCchHHHHHHHHH
Confidence 368999999999998764 2221122222233445544444333333333333
No 137
>PRK09698 D-allose kinase; Provisional
Probab=35.08 E-value=45 Score=23.77 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.0
Q ss_pred CeEEEecccceEEEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~ 19 (91)
.++|||+|.|+..+++++
T Consensus 5 ~~lgidig~t~i~~~l~d 22 (302)
T PRK09698 5 VVLGIDMGGTHIRFCLVD 22 (302)
T ss_pred EEEEEEcCCcEEEEEEEc
Confidence 368999999999999886
No 138
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=35.06 E-value=85 Score=23.07 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=17.2
Q ss_pred CeEEEecccceEEEEEE-eCCeE
Q psy3438 2 PAIGIDLGTTYSCVAVF-QQGKV 23 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~-~~~~~ 23 (91)
..+|||.|.|-..+++. .+++.
T Consensus 1 ~~iGiDiGgT~~Kiv~~~~~~~~ 23 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEEPKGRR 23 (279)
T ss_pred CeEEEEeCcceEEEEEEcCCCcE
Confidence 36899999999999887 34443
No 139
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=34.51 E-value=60 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEecccceEEEEEEeCCeEEEE
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEII 26 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il 26 (91)
.|.+|.|.|.+-|+.+.+|++.+-
T Consensus 130 ~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 130 CLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred EEEEEcCccceeeEEecCCEeeee
Confidence 688999999999999988887654
No 140
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=34.21 E-value=67 Score=23.34 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=18.0
Q ss_pred CeEEEecccceEEEEEEeCCeEEEE
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEII 26 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il 26 (91)
..|.+|.|.|.+=|+++.+|++.+-
T Consensus 78 ~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp SEEEEEE-SS-EEEEEEETTEE---
T ss_pred CEEEEeCCCCEEEEEEEECCeeecc
Confidence 3689999999999999999988543
No 141
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=31.20 E-value=88 Score=16.86 Aligned_cols=11 Identities=55% Similarity=0.673 Sum_probs=9.5
Q ss_pred EecccceEEEE
Q psy3438 6 IDLGTTYSCVA 16 (91)
Q Consensus 6 IDfGTtns~va 16 (91)
||+|..-|.|+
T Consensus 3 idlgnneslv~ 13 (49)
T PF07151_consen 3 IDLGNNESLVC 13 (49)
T ss_pred ccccCCcceEE
Confidence 79999988877
No 142
>COG4065 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.96 E-value=25 Score=27.04 Aligned_cols=11 Identities=55% Similarity=1.008 Sum_probs=9.0
Q ss_pred CeEEEecccce
Q psy3438 2 PAIGIDLGTTY 12 (91)
Q Consensus 2 ~~iGIDfGTtn 12 (91)
+.+.||||||-
T Consensus 227 PC~siDfGTTL 237 (480)
T COG4065 227 PCMSIDFGTTL 237 (480)
T ss_pred CceEeecccee
Confidence 46899999984
No 143
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=30.68 E-value=59 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCeEEEecccceEEEEEEeCCe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~~ 22 (91)
|+.+-||.|+|...++++++++
T Consensus 338 ~~~LliD~GNTriKwa~~~~~~ 359 (592)
T PRK13325 338 ERFLLLDGGNSRLKWAWVENGT 359 (592)
T ss_pred ceEEEEEcCcCceeEEEEcCCc
Confidence 6788999999999999987654
No 144
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.05 E-value=70 Score=26.49 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.9
Q ss_pred eEEEecccceEEEEEEeCCeEEEEec
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIAN 28 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~~ 28 (91)
+|++|.|.|.+-++.+.+|.+++...
T Consensus 280 ~i~~DmGGTStDva~i~~G~pe~~~e 305 (674)
T COG0145 280 AIVFDMGGTSTDVALIIDGEPEISSE 305 (674)
T ss_pred EEEEEcCCcceeeeeeecCcEEeecc
Confidence 78999999999999999998877653
No 145
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=29.98 E-value=45 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.7
Q ss_pred EEEecccceEEEEEEeC
Q psy3438 4 IGIDLGTTYSCVAVFQQ 20 (91)
Q Consensus 4 iGIDfGTtns~va~~~~ 20 (91)
+.+|+|-||+.+++++.
T Consensus 1 l~~DIGGT~i~~glvd~ 17 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI 17 (316)
T ss_pred CeEecCcceeeEEEEec
Confidence 46899999999999864
No 146
>PF14239 RRXRR: RRXRR protein
Probab=29.55 E-value=88 Score=21.61 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.9
Q ss_pred CeEEEecccceEEEEEEeCC
Q psy3438 2 PAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~ 21 (91)
..+|||-|.-++-+|+..+.
T Consensus 52 i~lgiDpGsk~tGiav~~~~ 71 (176)
T PF14239_consen 52 IRLGIDPGSKTTGIAVVSEK 71 (176)
T ss_pred EEEEECCCCCeEEEEEEeCC
Confidence 35899999999999997665
No 147
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=29.47 E-value=55 Score=24.80 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=16.9
Q ss_pred eEEEecccceEEEEEEeCCe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGK 22 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~ 22 (91)
++|||=|||-...|++.++.
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~ 20 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEK 20 (326)
T ss_pred CccccCCCccEEEEEecCCc
Confidence 48999999999999886554
No 148
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=29.42 E-value=79 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=12.1
Q ss_pred EEecccceEEEEEE
Q psy3438 5 GIDLGTTYSCVAVF 18 (91)
Q Consensus 5 GIDfGTtns~va~~ 18 (91)
|||.|-.|..++..
T Consensus 1 ~iDvGyg~~K~~~~ 14 (320)
T TIGR03739 1 AVDVGYGNTKFVSQ 14 (320)
T ss_pred CccccCCceEEEec
Confidence 68999999998864
No 149
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=27.89 E-value=1.2e+02 Score=22.24 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=18.8
Q ss_pred eEEEecccceEEEEEEeCCeEEEEe
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEIIA 27 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il~ 27 (91)
++-+|+|...+.+.++.+|++....
T Consensus 182 ~~lvdiG~~~t~~~i~~~g~~~f~R 206 (340)
T PF11104_consen 182 VALVDIGASSTTVIIFQNGKPIFSR 206 (340)
T ss_dssp EEEEEE-SS-EEEEEEETTEEEEEE
T ss_pred EEEEEecCCeEEEEEEECCEEEEEE
Confidence 5679999999999999999875543
No 150
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=27.35 E-value=58 Score=24.81 Aligned_cols=19 Identities=47% Similarity=0.560 Sum_probs=16.6
Q ss_pred EEecccceEEEEEEeC-CeE
Q psy3438 5 GIDLGTTYSCVAVFQQ-GKV 23 (91)
Q Consensus 5 GIDfGTtns~va~~~~-~~~ 23 (91)
|||-||....++.+++ |++
T Consensus 1 GIDpGT~s~dv~~~dd~g~v 20 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKV 20 (343)
T ss_pred CCCCCCCcEEEEEEccCCcE
Confidence 7999999999999887 655
No 151
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.36 E-value=1.4e+02 Score=24.76 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=16.7
Q ss_pred CCeEEEecccceEEEEEEeCC
Q psy3438 1 MPAIGIDLGTTYSCVAVFQQG 21 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~~~ 21 (91)
|..+|||-|.||+=+.++++.
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~ 22 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDED 22 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCC
Confidence 567999999999977766543
No 152
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.94 E-value=1.5e+02 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=20.7
Q ss_pred CeEEEecccceEEEEEEeCCeEEEEe
Q psy3438 2 PAIGIDLGTTYSCVAVFQQGKVEIIA 27 (91)
Q Consensus 2 ~~iGIDfGTtns~va~~~~~~~~il~ 27 (91)
+.+-+|+|+.....|+++.+++.-+.
T Consensus 228 palvVd~GngHttaalvdedRI~gv~ 253 (342)
T COG4012 228 PALVVDYGNGHTTAALVDEDRIVGVY 253 (342)
T ss_pred ceEEEEccCCceEEEEecCCeEEEEe
Confidence 46789999999999998877665443
No 153
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=24.51 E-value=62 Score=23.17 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=15.8
Q ss_pred EEEecccceEEEEEEe-CCe
Q psy3438 4 IGIDLGTTYSCVAVFQ-QGK 22 (91)
Q Consensus 4 iGIDfGTtns~va~~~-~~~ 22 (91)
+|||+|.|+..+++.+ +++
T Consensus 1 lgidig~t~~~~~l~d~~g~ 20 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN 20 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC
Confidence 6999999999999876 443
No 154
>COG4328 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=24.23 E-value=42 Score=24.44 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=9.2
Q ss_pred CCeEEEecccc
Q psy3438 1 MPAIGIDLGTT 11 (91)
Q Consensus 1 m~~iGIDfGTt 11 (91)
|.+||||+|=+
T Consensus 1 m~fvGiDlaW~ 11 (266)
T COG4328 1 MKFVGIDLAWA 11 (266)
T ss_pred CceEEeeeecc
Confidence 78999999843
No 155
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=24.05 E-value=93 Score=23.32 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCeEEEecccceEEEEEEe
Q psy3438 1 MPAIGIDLGTTYSCVAVFQ 19 (91)
Q Consensus 1 m~~iGIDfGTtns~va~~~ 19 (91)
|.++|||=|.|-|.+.+.+
T Consensus 5 ~~~lGVDGGGTkt~a~l~~ 23 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLAD 23 (301)
T ss_pred cEEEEEccCCcceEEEEEc
Confidence 3468999999988877765
No 156
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=22.96 E-value=87 Score=20.24 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.8
Q ss_pred EEecccceEEEEEEe
Q psy3438 5 GIDLGTTYSCVAVFQ 19 (91)
Q Consensus 5 GIDfGTtns~va~~~ 19 (91)
|||+|.++..+++.+
T Consensus 1 gidig~~~i~~~l~d 15 (179)
T PF00480_consen 1 GIDIGGTSIRIALVD 15 (179)
T ss_dssp EEEEESSEEEEEEEE
T ss_pred CEEECCCEEEEEEEC
Confidence 799999999999886
No 157
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=22.30 E-value=37 Score=22.26 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.5
Q ss_pred CCCCeeeeEEEEEcCCe---eeeccch
Q psy3438 29 DQGNRTTPSYVAFTDTE---RLIGLRK 52 (91)
Q Consensus 29 ~~g~~~~PS~V~~~~~~---~~vG~~A 52 (91)
..|=+.+||.+.|.+|+ .++|..-
T Consensus 86 ~fgV~siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 86 RFGVFRFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred HcCCccCCEEEEEECCEEEEEEeCcCC
Confidence 35667899999999874 5566443
No 158
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=21.27 E-value=2.8e+02 Score=19.31 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=17.2
Q ss_pred EEecccceEEEEEEeCCeEEEEecCC
Q psy3438 5 GIDLGTTYSCVAVFQQGKVEIIANDQ 30 (91)
Q Consensus 5 GIDfGTtns~va~~~~~~~~il~~~~ 30 (91)
|-|||+.+..--+-.++....+....
T Consensus 104 G~Dlg~~YrLrlv~~~~el~L~a~~~ 129 (181)
T PF12565_consen 104 GQDLGLRYRLRLVQRNGELVLVATPR 129 (181)
T ss_pred CeecCceEEEEEEEECCEEEEEecCC
Confidence 77899888864444566666665443
No 159
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=21.16 E-value=1e+02 Score=24.09 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=31.2
Q ss_pred eEEEecccceEEEEEEeCCeEEEE-ecCCCCee-eeEEEEEc-CCeeeeccchhhcc
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEII-ANDQGNRT-TPSYVAFT-DTERLIGLRKFWFA 56 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il-~~~~g~~~-~PS~V~~~-~~~~~vG~~A~~~~ 56 (91)
.+-||.||-.+.+.+..+..|..+ ++.-+.+. ..++..-. .+...+|.+|....
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~ 64 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDR 64 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhcc
Confidence 378999999999887655545444 33223221 23332211 34577888776544
No 160
>KOG2912|consensus
Probab=20.37 E-value=32 Score=26.51 Aligned_cols=12 Identities=58% Similarity=1.068 Sum_probs=11.1
Q ss_pred EEecccceEEEE
Q psy3438 5 GIDLGTTYSCVA 16 (91)
Q Consensus 5 GIDfGTtns~va 16 (91)
|||.||+-||+.
T Consensus 106 GiDIgtgasci~ 117 (419)
T KOG2912|consen 106 GIDIGTGASCIY 117 (419)
T ss_pred eeeccCchhhhH
Confidence 999999999985
No 161
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=20.31 E-value=2.2e+02 Score=20.61 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.0
Q ss_pred eEEEecccceEEEEEEeCCeEEEE
Q psy3438 3 AIGIDLGTTYSCVAVFQQGKVEII 26 (91)
Q Consensus 3 ~iGIDfGTtns~va~~~~~~~~il 26 (91)
.+-||+|...+.++++.+|++...
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~ 213 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFT 213 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEE
Confidence 678999999999999988876544
Done!