RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3438
(91 letters)
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 132 bits (334), Expect = 6e-39
Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 71
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 129 bits (327), Expect = 5e-38
Identities = 38/48 (79%), Positives = 41/48 (85%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGIDLGTTYSCVAV + GK EI+AN+QGNR TPSYVAFTD ERLIG
Sbjct: 19 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIG 66
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 129 bits (326), Expect = 4e-37
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIG 52
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 122 bits (309), Expect = 2e-34
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLG 50
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus
kaustophilus HTA426}
Length = 509
Score = 82.3 bits (204), Expect = 3e-20
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIG 49
IGIDLGTT SCVAV + G+V++I N +GNRTTPS VAF + ERL+G
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVG 50
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 80.7 bits (200), Expect = 8e-20
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T E L+G
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide
binding, protein folding, acetylation, ATP-binding,
cell inner membrane; NMR {Escherichia coli}
Length = 605
Score = 80.0 bits (198), Expect = 2e-19
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T E L+G
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.004
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 48/104 (46%)
Query: 16 AVFQ---QGKVEIIA--NDQGNRTTPSYVAFTDTERLIGLRKFWFAYFTTYQ-------- 62
A+F+ +G +++A QGN T Y F + LR + TY
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGN--TDDY--FEE------LRDLY----QTYHVLVGDLIK 189
Query: 63 ---------VDLTGEPDQVCLSGL------------PDSDWLAS 85
+ T + ++V GL PD D+L S
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase,
MREB, PARM, structural PROT; 1.90A {Thermoplasma
acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A
2fsn_A*
Length = 346
Score = 32.4 bits (73), Expect = 0.010
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERL 47
M +G+D+G + + GK I PS A T+TE
Sbjct: 21 MVVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESW 57
>2yhw_A Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase; transferase,
sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A
{Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Length = 343
Score = 28.5 bits (64), Expect = 0.25
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 1 MPAIGIDLGTTYSCVAVF-QQGKV 23
+ A+ +DLG T VA+ +G++
Sbjct: 30 LSALAVDLGGTNLRVAIVSMKGEI 53
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium
meliloti}
Length = 136
Score = 27.9 bits (62), Expect = 0.34
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 18 FQQGKVEIIANDQGNRTTPSYVAFTDTERLIGL 50
+ + +V +I +A ++R GL
Sbjct: 5 YAKERVRLITASGRTHDLTVELAVDPSQREQGL 37
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 27.5 bits (61), Expect = 0.47
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVA 40
M +G+D+G+T S + + G+ +I+A++ + T +
Sbjct: 1 MYTMGLDIGSTASKGVILKNGE-DIVASETISSGTGTTGP 39
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin
secretion; HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 27.1 bits (60), Expect = 0.71
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 2 PAIGIDLGTTYSCVAVFQ--QGKVEIIA 27
A+G+++G + + ++ +A
Sbjct: 14 EALGLEIGASALKLVEVSGNPPALKALA 41
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 27.0 bits (61), Expect = 0.78
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERLI 48
IGIDLGT + V + +G I+ N+ PS +A + T ++
Sbjct: 6 IGIDLGTANTLVFLRGKG---IVVNE------PSVIAIDSTTGEIL 42
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 26.4 bits (58), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIA 27
+ +GID+G+T S + + GK EI+A
Sbjct: 3 IYTLGIDVGSTASKCIILKDGK-EIVA 28
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein
structure initiative; 2.20A {Escherichia coli} SCOP:
c.55.1.10 c.55.1.10
Length = 289
Score = 26.4 bits (59), Expect = 1.4
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 1 MPAIGIDLG-TTYSCVAVFQQGKV 23
M + ID+G T + + G++
Sbjct: 1 MTTLAIDIGGTKLAAALIGADGQI 24
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin,
divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB:
1e4g_T* 1e4f_T* 4a2b_A*
Length = 419
Score = 25.8 bits (57), Expect = 1.9
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 4 IGIDLGTTYSCVAV--FQQGKVEIIA 27
ID+G+ Y V + + E +A
Sbjct: 11 TSIDIGSRYIKGLVLGKRDQEWEALA 36
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 25.6 bits (57), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKV 23
M +G+DLG T VF ++
Sbjct: 1 MKVVGLDLGGTKIAAGVFDGKRL 23
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus
lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A*
2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A*
3fm9_A
Length = 221
Score = 25.6 bits (57), Expect = 2.1
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 42 TDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLA 84
TDT + W A ++ L G+ D L
Sbjct: 14 TDTAEYH--FRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQ 54
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 24.9 bits (55), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 4 IGIDLGTTYSC--VAVFQQGKV 23
IGIDLGT+ + + +QG+V
Sbjct: 3 IGIDLGTS-GVKVILLNEQGEV 23
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 24.9 bits (55), Expect = 4.1
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 3/22 (13%)
Query: 4 IGIDLGTTYSC--VAVFQQGKV 23
D+GTT + G +
Sbjct: 8 ATFDIGTT-EVKAALADRDGGL 28
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 24.9 bits (55), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 4 IGIDLGTTYSC--VAVFQQGKV 23
IG+D+GTT + V GK
Sbjct: 7 IGMDVGTT-ATKGVLYDINGKA 27
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 24.9 bits (55), Expect = 4.5
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 4 IGIDLGTTYSC--VAVFQQGKV 23
IG+D+GTT S + V V
Sbjct: 10 IGLDIGTT-STIAILVRLPDTV 30
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 24.4 bits (52), Expect = 6.3
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 4 IGIDLGTTYSCVAVFQQG 21
+ ID G+T + +
Sbjct: 3 VFIDDGSTNIKLQWQESD 20
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 24.5 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 3 AIGIDLGTTYSCVAVF-QQGKV 23
IGIDLG T A+ G V
Sbjct: 8 IIGIDLGGTTIKFAILTTDGVV 29
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist,
antagonist, LUXR, acylated homoseri lactone,
transcription factor; HET: HL6; 1.55A {Chromobacterium
violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Length = 182
Score = 24.3 bits (52), Expect = 7.9
Identities = 6/45 (13%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 40 AFTDTERLIGLRKFWFAYFTTYQVDLTGEPDQVCLSGLPDSDWLA 84
+ A + ++V P DWL
Sbjct: 38 FLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPS-DWLD 81
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural
genomics, center for structural genomics of infec
diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 24.1 bits (53), Expect = 8.5
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 4 IGIDLG-TTYSCVAVFQQGKV 23
G D+G T A ++ +
Sbjct: 27 YGFDVGGTKIEFGAFNEKLER 47
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 23.7 bits (52), Expect = 9.8
Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 4 IGIDLG-TTYSCVAVFQQGKV 23
G D+G T + ++
Sbjct: 27 YGFDIGGTKIALGVFDSTRRL 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,439,017
Number of extensions: 72811
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 38
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)