RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3438
(91 letters)
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 85.5 bits (211), Expect = 3e-23
Identities = 44/55 (80%), Positives = 46/55 (83%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFWFA 56
PA+GIDLG+TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIG
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 56
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 68.9 bits (168), Expect = 7e-17
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIG 49
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T D E L+G
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVG 49
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 54.4 bits (130), Expect = 1e-11
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYV 39
IGIDLGT + V + +G V + +T +
Sbjct: 2 DIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEI 38
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 29.0 bits (64), Expect = 0.062
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIAN 28
+ +GID+G+T S + + GK EI+A
Sbjct: 2 IYTLGIDVGSTASKCIILKDGK-EIVAK 28
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 26.5 bits (57), Expect = 0.44
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEI 25
+GID G T + Q +
Sbjct: 3 VGIDAGGTLIKIVQEQDNQRTF 24
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 26.0 bits (56), Expect = 0.46
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGLRKFW 54
P IGID+G T + K +++ T + E + +
Sbjct: 2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAEL 55
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 193
Score = 25.3 bits (55), Expect = 0.94
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 4 IGIDLGTTYSCVAVFQQ--GKVEIIA 27
ID+G+ Y V + + E +A
Sbjct: 5 TSIDIGSRYIKGLVLGKRDQEWEALA 30
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 25.5 bits (56), Expect = 1.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 4 IGIDLGTTYSCVAVFQ--QGKVEIIA 27
GID+G + VA+ +A
Sbjct: 4 AGIDIGNATTEVALASDYPQARAFVA 29
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 25.1 bits (54), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 4 IGIDLGTTYSCVAVF-QQGKV 23
+ ID GTT S +F + GK
Sbjct: 4 MAIDQGTTSSRAIIFDRNGKK 24
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 24.6 bits (53), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 4 IGIDLGTTYSCVAVF-QQGKV 23
IG+D G T + + + G
Sbjct: 7 IGVDGGGTGTRIRLHASDGTP 27
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 25.1 bits (54), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 4 IGIDLGTTYSCVAVF-QQGKV 23
+ +D GTT S V +
Sbjct: 6 VALDQGTTSSRAVVMDHDANI 26
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 23.6 bits (50), Expect = 3.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MPAIGIDLGTTYSCVAVF 18
M + ID+G T A+
Sbjct: 1 MTTLAIDIGGTKLAAALI 18
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 23.3 bits (49), Expect = 4.4
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD 43
G D+G T + VF + + + SY AF D
Sbjct: 3 YGFDIGGTKIALGVFDSTR-RLQWEKRVPTPHTSYSAFLD 41
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 23.3 bits (49), Expect = 5.2
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 3 AIGIDLGTTYSCVAVF 18
+GI++ +
Sbjct: 6 VLGIEVTRDEIAACLI 21
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 22.3 bits (47), Expect = 8.9
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 1 MPAIGIDLGTTYSCVAVF 18
M ID+G T A
Sbjct: 1 MTIATIDIGGTGIKFASL 18
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,084
Number of extensions: 13047
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 19
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)