BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3441
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
ES V + + ++++ E + VLI FYAPWCG CK L+P++
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 392
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 74 VLIMFYAPWCGFCKQLKPEFLAGRDNL 100
+L+ F+APWCG K+L PE+ A L
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRL 50
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Human Protein Disulfide-Isomerase A3
Length = 142
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
ES V + + ++++ E + VLI FYAPWCG CK L+P++
Sbjct: 23 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
N+++ +T+ VLI FYAPWCG CK L P++
Sbjct: 18 NEIVLDDTKDVLIEFYAPWCGHCKALAPKY 47
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLA 95
+ V + + + ++ + VLI FYAPWCG CKQL+P + +
Sbjct: 3 SGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTS 49
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
TP++ +K + L+ FYAPWCG CK+L F
Sbjct: 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTF 57
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S+ V+ L TP N+ + + L+ FYAPWCG C++L PE+
Sbjct: 14 SSSDDVIEL-TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEW 57
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
VL+ FYAPWCG CKQ PE+
Sbjct: 37 VLLEFYAPWCGHCKQFAPEY 56
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
VL+ FYAPWCG CKQ PE+
Sbjct: 35 VLLEFYAPWCGHCKQFAPEY 54
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
+L+ FYAPWCG CK+L PE+
Sbjct: 150 ILVEFYAPWCGHCKKLAPEY 169
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100
AVV L T + N+ ++ VL F+APWCG CK + PE++ + L
Sbjct: 14 SAVVKLAT-DSFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAETL 60
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++++ + VL+++YAPWCG CK+L P +
Sbjct: 369 DEIVNDPKKDVLVLYYAPWCGHCKRLAPTY 398
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
+L+ FYAPWCG CK+L PE+
Sbjct: 27 ILVEFYAPWCGHCKKLAPEY 46
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKP 91
E + V + FYAPWCG CKQL P
Sbjct: 266 EKKNVFVEFYAPWCGHCKQLAP 287
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100
+++ P+L+ F+APWCG C+Q+ P+F A L
Sbjct: 61 ERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL 93
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 50 SAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLA 95
S+ V+ L T + +K + ++ FYAPWCG CK L+PE+ A
Sbjct: 5 SSGDVIEL-TDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAA 49
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
+L+ FYAPWCG CK L PE+
Sbjct: 27 LLVEFYAPWCGHCKALAPEY 46
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKP 91
E + V + FYAPWCG CKQL P
Sbjct: 24 EKKNVFVEFYAPWCGHCKQLAP 45
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 52 QAVVHLPTPQALN-KLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
QA + L TPQ N K+L+ +T V + FYAPWCG C+ PEF
Sbjct: 3 QASIDL-TPQTFNEKVLQGKTHWV-VDFYAPWCGPCQNFAPEF 43
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 74 VLIMFYAPWCGFCKQLKPEFLAGRDNL 100
+L+ F+APWCG CK+L PE+ A L
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRL 50
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
T + L+KLL+ + P +I F+APWCG C+ P F
Sbjct: 44 TAETLDKLLQDDL-PXVIDFWAPWCGPCRSFAPIF 77
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLA 95
T + + + K +PVL+ F+A WCG C+Q+ P A
Sbjct: 11 TDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEA 47
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +PVL+ F+APWCG C+ + P
Sbjct: 17 KSDKPVLVDFWAPWCGPCRMIAP 39
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEF 93
K+E +P+++ F A WCG CK + P F
Sbjct: 21 KEEHKPIVVAFTATWCGPCKMIAPLF 46
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 47 EDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
E ++ V+ + + +++LK E +PVL+ F+A WCG C+ + P
Sbjct: 2 ETAMSKGVITITDAEFESEVLKAE-QPVLVYFWASWCGPCQLMSP 45
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+H T + K P++++ + WCG CK LKP+F
Sbjct: 30 IHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKF 68
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+H T + K P++++ + WCG CK LKP+F
Sbjct: 23 IHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKF 61
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
I FYAPWCG CK L P
Sbjct: 26 TFIKFYAPWCGHCKTLAP 43
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEF 93
K+E +P+++ F A WCG CK + P F
Sbjct: 21 KEEHKPIVVDFTATWCGPCKMIAPLF 46
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of
Human Erp46
Length = 110
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
I FYAPWCG CK L P
Sbjct: 19 TFIKFYAPWCGHCKTLAP 36
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
I FYAPWCG CK L P +
Sbjct: 24 TFIKFYAPWCGHCKTLAPTW 43
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGHCKMIAP 40
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 67 LKKETRPVLIMFYAPWCGFCKQLKPEF 93
+++ P++IMF WC CK++KP F
Sbjct: 13 VRQHPDPIIIMFTGSWCQPCKKMKPTF 39
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + L K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDLVKADGAILVDFWAEWCGPCKMIAP 40
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
P ++++ ET PV++ F+A WCG CK L P
Sbjct: 21 PDFQDRVVNSET-PVVVDFHAQWCGPCKILGPRL 53
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
PV++ F+APWCG CK + P
Sbjct: 20 PVMVDFWAPWCGPCKLIAP 38
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
PV++ F+APWCG CK + P
Sbjct: 19 PVMVDFWAPWCGPCKLIAP 37
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 66 LLKKETRPVLIMFYAPWCGFCKQLKP 91
++ + + PVL+ F+APWCG C+ + P
Sbjct: 14 VVLESSVPVLVDFWAPWCGPCRIIAP 39
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG CK + P
Sbjct: 31 KPVLVDFWATWCGPCKMVAP 50
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG CK + P
Sbjct: 26 KPVLVDFWATWCGPCKMVAP 45
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 14 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 50
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 50 SAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ V + T + +LL+ + +I FYAPWC C+ L+PE+
Sbjct: 4 GSSGNVRVITDENWRELLEGDW---MIEFYAPWCPACQNLQPEW 44
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T ++ + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDESFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 52 QAVVHLPTPQALN-KLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
QA + L TPQ N K+L+ +T V + FYAPW G + PEF
Sbjct: 657 QASIDL-TPQTFNEKVLQGKTHWV-VDFYAPWSGPSQNFAPEF 697
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 47 EDESAQAVVHLPTPQALNKLLKKETRPVLIM--FYAPWCGFCKQLKPEF 93
ED +VV L TP N+L+K+ + M FY+PW + L PE+
Sbjct: 538 EDLRNPSVVSL-TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEW 585
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
+V + T QA + + V++ F+A WCG CK++ P
Sbjct: 9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAP 46
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 51 AQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++ ++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 1 SEKIIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 49 ESAQAVVHLPTPQALNKLLKKE----------TRPVLIMFYAPWCGFCKQLKP 91
E V+HL + L K+ E +P ++ FYA WCG CK + P
Sbjct: 6 EGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAP 58
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 52 QAVVHLPTPQALNKLLKKET----------RPVLIMFYAPWCGFCKQLKP 91
+HL + L K+ E +P ++ FYA WCG CK + P
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAP 71
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 52 QAVVHLPTPQALNKLLKKET----------RPVLIMFYAPWCGFCKQLKP 91
+HL + L K+ E +P ++ FYA WCG CK + P
Sbjct: 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAP 71
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 5 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 41
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 50 SAQAVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
S ++ L L LL++ + + V++ F+A WCG CK + P F
Sbjct: 2 SMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLF 46
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 57 LPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLA 95
L T L KL+ + + R +++ F+A WCG C+ + P+ A
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEA 43
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEFL 94
+L K + V++ F+A WCG CK + P+ +
Sbjct: 18 GQLTKASGKLVVLDFFATWCGPCKMISPKLV 48
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
V L + + L + V++ F+A WCG CK + P
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAP 39
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TEDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
V L + + L + V++ F+A WCG CK + P
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAP 46
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG C+ + P
Sbjct: 18 KPVLVDFWAAWCGPCRMMAP 37
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG C+ + P
Sbjct: 18 KPVLVDFWAAWCGPCRMMAP 37
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEFL 94
+L K + V++ F+A WCG CK + P+ +
Sbjct: 13 GQLTKASGKLVVLDFFATWCGPCKMISPKLV 43
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 49 ESAQAVVHL-PTPQALNKLLKKETRP---VLIMFYAPWCGFCKQLKPEFLAGRDN 99
E A VHL T + ++ L + +R VL F A WCG CKQ+ P ++ +N
Sbjct: 20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSEN 74
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 67 LKKETRPVLIMFYAPWCGFCKQLKPEF 93
L K+ ++I FYA WCG CK ++P
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHL 52
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 54 VVHL-PTPQALNKLLKKETRPVLIMFYAPWCGFCKQL 89
+VH T +AL +K+ VL+ F+A WCG C++L
Sbjct: 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRL 41
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL +LK + +L+ F+A WCG CK + P
Sbjct: 4 IIHLTDDSFETDVLKAD-GAILVDFWAEWCGPCKMIAP 40
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
PVL+ F+A WCG C+ + P
Sbjct: 19 PVLVDFWAAWCGPCRMMAP 37
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
PVL+ F+A WCG C+ + P
Sbjct: 19 PVLVDFWAAWCGPCRMMAP 37
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
++ L L LL++ + + V++ F+A WCG CK + P F
Sbjct: 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLF 55
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++H+ T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHV-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAP 40
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WC +CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCVWCKMIAP 40
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG C+ + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCEMIAP 40
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
VL F+APWCG CK + P
Sbjct: 20 VLADFWAPWCGPCKMIAP 37
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V+I FYA WCG CK + P+
Sbjct: 21 KLVVIDFYATWCGPCKMIAPKL 42
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
LP + KL K V + F+A WCG C+Q P
Sbjct: 14 LPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFP 48
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
Length = 140
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++ ++ +PV++ FY+P C +CK +P F
Sbjct: 17 SQQVEDSKKPVVVXFYSPACPYCKAXEPYF 46
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 KLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
K + + V+I F+A WCG CK + P F
Sbjct: 27 KQVTGGDKVVVIDFWATWCGPCKMIGPVF 55
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKP 91
K E+ L+ F+A WCG CK + P
Sbjct: 17 KVESGVQLVDFWATWCGTCKMIAP 40
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKP 91
K E+ L+ F+A WCG CK + P
Sbjct: 16 KVESGVQLVDFWATWCGSCKMIAP 39
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKP 91
+ + V++ FYA WCG CK + P
Sbjct: 17 QDKLVVVDFYATWCGPCKMIAP 38
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKP 91
+ + V++ FYA WCG CK + P
Sbjct: 23 QDKLVVVDFYATWCGPCKMIAP 44
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
PV++ F+APWCG K + P
Sbjct: 20 PVMVDFWAPWCGPSKLIAP 38
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 53 AVVHLPTPQALNKLL---KKETRPVLIMFYAPWCGFCKQLKPEF 93
AV+ T Q + + K + V+I F A WCG C+ + P F
Sbjct: 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVF 50
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKPEF 93
K + VL+ F+A WCG CK + P
Sbjct: 18 KASGLVLVDFWAEWCGPCKMIGPAL 42
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 73 PVLIMFYAPWCGFCKQLKPEFLAGR 97
L ++ WCG+C +LK A R
Sbjct: 4 AALTIYTTSWCGYCLRLKTALTANR 28
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG K + P
Sbjct: 28 KPVLVDFWATWCGPSKMVAP 47
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 50 SAQAVVHL-----PTPQALNK-LLKKETRPVLIMFYAPWCGFCKQLK 90
+AQ HL T LN+ L++ + +PV++ YA WC CK+ +
Sbjct: 1 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFE 47
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd
(Photoreduced Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 50 SAQAVVHL-----PTPQALNK-LLKKETRPVLIMFYAPWCGFCKQLK 90
+AQ HL T LN+ L++ + +PV++ YA WC CK+ +
Sbjct: 4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFE 50
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 57 LPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPE 92
LPT NK L + + VL+ F+A WC +C+ P
Sbjct: 26 LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPS 62
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCK 87
++HL T + + + K +L+ F+A WCG CK
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCK 36
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKP 91
K E+ L+ F+A WCG CK + P
Sbjct: 17 KVESGVQLVDFWATWCGPCKMIAP 40
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG CK +KP F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFF 42
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKPEF 93
+ +P ++ F+ PWC FC P
Sbjct: 23 QGKPAVLWFWTPWCPFCNAEAPSL 46
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 75 LIMFYAPWCGFCKQLKP 91
L+ F+APWCG C+ + P
Sbjct: 54 LVDFFAPWCGPCRLVSP 70
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEF 93
K+ + V+I F A WCG C+ + P F
Sbjct: 33 KEAGKVVIIDFTASWCGPCRFIAPVF 58
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG K + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPSKMIAP 40
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin
C35a
Length = 128
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WCG K + P
Sbjct: 24 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAP 60
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From
Saccharomyces Cerevisiae In Complex With Thioredoxin
Trx2
Length = 112
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
V L + + L + V++ F+A WCG K + P
Sbjct: 10 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAP 47
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae
In Complex With Trx2
Length = 104
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
V L + + L + V++ F+A WCG K + P
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAP 39
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+PV++ + WCG CK + P++
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKY 47
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+PV++ + WCG CK + P++
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKY 59
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGF-CKQLKP 91
++HL T + + + K +L+ F+A WCG CK + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAP 41
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 69 KETRPVLIMFYAPWCGFC 86
K+ +P LI F+A WC C
Sbjct: 36 KKDKPTLIKFWASWCPLC 53
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From
Xylella Fastidiosa Temecula1
Length = 133
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 48 DESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQL 89
DE A A + A K + +P L++F A WC C+ L
Sbjct: 9 DEHADAWTQVKKALAAGK---RTHKPTLLVFGANWCTDCRAL 47
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 69 KETRPVLIMFYAPWCGFC 86
K+ +P LI F+A WC C
Sbjct: 21 KKDKPTLIKFWASWCPLC 38
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 69 KETRPVLIMFYAPWCGFC 86
K+ +P LI F+A WC C
Sbjct: 22 KKDKPTLIKFWASWCPLC 39
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 49 ESAQAVVHL-PTPQALNKLLKKETRP---VLIMFYAPWCGFCKQLKPEFLAGRDN 99
E A VHL T + ++ L + +R VL F A WCG +Q+ P ++ +N
Sbjct: 20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSEN 74
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
V+I F A WCG C+ + P F
Sbjct: 37 VVIDFTASWCGPCRIMAPVF 56
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++HL T + + + K +L+ F+A WC K + P
Sbjct: 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCACAKMIAP 40
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 75 LIMFYAPWCGFCKQLKPEFLAGRD 98
L+ FYA WC F + L P F D
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASD 49
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
VL F+APWCG K + P
Sbjct: 20 VLADFWAPWCGPSKMIAP 37
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+ V++ F A WCG C++ P
Sbjct: 34 KVVMLQFTASWCGVCRKEMP 53
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
VL F+APWCG K + P
Sbjct: 20 VLADFWAPWCGPSKMIAP 37
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
Length = 154
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 71 TRPVLIMFYAPWCGFCK 87
++P +I+F+A WC CK
Sbjct: 30 SKPAVIVFWASWCTVCK 46
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 54 VVHLPTPQALNKLLKKETRP---VLIMFYAPWCGFCKQLKPEF 93
V+ T + N+ L+K V++ F A WCG C+ + P F
Sbjct: 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFF 60
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+P ++ F+APWC C+ P
Sbjct: 40 KPAVLWFWAPWCPTCQGEAP 59
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 72 RPVLIMFYAPWCGFCKQLKP 91
+P ++ F+APWC C+ P
Sbjct: 26 KPAVLWFWAPWCPTCQGEAP 45
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKP 91
K E+ L+ F+A WCG K + P
Sbjct: 17 KVESGVQLVDFWATWCGTSKMIAP 40
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
Length = 109
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKP 91
+ + V++ FYA WCG K + P
Sbjct: 23 QDKLVVVDFYATWCGPSKMIAP 44
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG K +KP F
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFF 42
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG K +KP F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFF 42
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 59 TPQALNKLLKKETRPVLIM-FYAPWCGFCKQLKP 91
TPQ+L L PV I+ +A WCG C++ P
Sbjct: 15 TPQSLQSL----KAPVRIVNLWATWCGPCRKEXP 44
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
Length = 134
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 50 SAQAVVHL-----PTPQALNK-LLKKETRPVLIMFYAPWCGFCKQLK 90
+AQ HL T LN+ L++ + +PV++ YA WC K+ +
Sbjct: 4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVASKEFE 50
>pdb|1KU0|A Chain A, Structure Of The Bacillus Stearothermophilus L1 Lipase
pdb|1KU0|B Chain B, Structure Of The Bacillus Stearothermophilus L1 Lipase
Length = 388
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 3 VEVNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQA 62
V N PY + Y D + ++ R+E +F ++ + K W ++A+ + +P +
Sbjct: 193 VASNAPYTSEIY-DFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTARYDLSVPGAET 251
Query: 63 LNKLLKKETRPVLIMF 78
LN+ +K + F
Sbjct: 252 LNRWVKASPNTYYLSF 267
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG K +KP F
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFF 53
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V++ F A WCG K +KP F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFF 42
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 26 KETVSAFVNFLKDPKGDI 43
K T+ +N LKDP GD+
Sbjct: 158 KATIPLLINLLKDPNGDV 175
>pdb|1ECR|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna
pdb|2EWJ|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna- Locked Form
pdb|2I05|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Tera Dna
pdb|2I06|A Chain A, Escherichia Coli Replication Terminator Protein (tus)
Complexed With Dna- Locked Form
Length = 309
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 21 KNYERKETVSAFVNFLKDPKGDIPWEEDE-------SAQAVVHLPTPQALNKLLKKETRP 73
KN R E ++ LK P+ PW +E Q + LP L + +P
Sbjct: 179 KNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQP 238
Query: 74 VLIMFY 79
+ ++Y
Sbjct: 239 IARVWY 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,195,463
Number of Sequences: 62578
Number of extensions: 119279
Number of successful extensions: 461
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 149
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)