Query psy3441
Match_columns 100
No_of_seqs 157 out of 1727
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 16:47:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 99.7 1.1E-17 2.4E-22 123.8 6.9 76 25-100 331-413 (493)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.6 3.2E-15 7E-20 92.3 6.0 48 52-100 9-58 (113)
3 KOG0910|consensus 99.6 4.4E-15 9.5E-20 95.1 5.2 48 53-100 43-90 (150)
4 PTZ00102 disulphide isomerase; 99.6 2.1E-14 4.6E-19 105.9 9.3 74 27-100 325-404 (477)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.6 1E-14 2.3E-19 87.8 6.2 46 54-100 3-48 (104)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.7E-14 3.7E-19 86.7 5.9 45 54-100 3-47 (101)
7 PHA02278 thioredoxin-like prot 99.5 2E-14 4.3E-19 87.5 5.6 40 59-99 3-42 (103)
8 cd02985 TRX_CDSP32 TRX family, 99.5 2E-14 4.4E-19 87.0 5.6 42 59-100 2-44 (103)
9 cd02948 TRX_NDPK TRX domain, T 99.5 2.4E-14 5.1E-19 86.5 5.8 44 56-100 3-46 (102)
10 TIGR01130 ER_PDI_fam protein d 99.5 5.3E-14 1.1E-18 102.9 8.7 94 7-100 293-393 (462)
11 cd02954 DIM1 Dim1 family; Dim1 99.5 3.4E-14 7.5E-19 87.8 5.7 41 60-100 2-43 (114)
12 cd03002 PDI_a_MPD1_like PDI fa 99.5 4.4E-14 9.5E-19 85.5 5.3 45 55-100 3-47 (109)
13 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 4.9E-14 1.1E-18 84.3 5.3 45 56-100 3-47 (104)
14 cd02993 PDI_a_APS_reductase PD 99.5 9.5E-14 2.1E-18 84.7 6.0 46 54-100 3-50 (109)
15 cd02996 PDI_a_ERp44 PDIa famil 99.5 9.3E-14 2E-18 84.4 5.9 44 54-99 3-46 (108)
16 cd02992 PDI_a_QSOX PDIa family 99.5 8.4E-14 1.8E-18 85.9 5.7 46 54-100 3-48 (114)
17 KOG0191|consensus 99.5 1.7E-13 3.6E-18 99.5 7.9 91 7-100 101-191 (383)
18 PF00085 Thioredoxin: Thioredo 99.5 1E-13 2.3E-18 82.5 4.7 44 57-100 3-46 (103)
19 cd02994 PDI_a_TMX PDIa family, 99.5 1.9E-13 4.2E-18 81.9 5.7 42 54-99 3-44 (101)
20 cd02999 PDI_a_ERp44_like PDIa 99.4 1.8E-13 4E-18 82.6 5.2 40 61-100 7-47 (100)
21 cd02962 TMX2 TMX2 family; comp 99.4 3.7E-13 8E-18 87.0 6.9 46 55-100 30-76 (152)
22 PLN00410 U5 snRNP protein, DIM 99.4 2.2E-13 4.7E-18 87.1 5.2 45 56-100 7-52 (142)
23 KOG0907|consensus 99.4 3.8E-13 8.2E-18 82.3 5.1 33 68-100 18-50 (106)
24 KOG0190|consensus 99.4 1.5E-13 3.3E-18 102.1 3.6 47 52-100 25-71 (493)
25 cd03001 PDI_a_P5 PDIa family, 99.4 7.3E-13 1.6E-17 79.2 5.9 44 57-100 4-47 (103)
26 cd02956 ybbN ybbN protein fami 99.4 3.9E-13 8.4E-18 79.8 4.6 40 61-100 1-41 (96)
27 PTZ00443 Thioredoxin domain-co 99.4 7.8E-13 1.7E-17 90.3 6.4 48 52-100 30-81 (224)
28 PRK09381 trxA thioredoxin; Pro 99.4 7.3E-13 1.6E-17 80.4 5.6 47 53-100 4-50 (109)
29 cd02957 Phd_like Phosducin (Ph 99.4 9.5E-13 2.1E-17 80.8 5.8 47 53-100 5-53 (113)
30 COG3118 Thioredoxin domain-con 99.4 9.7E-13 2.1E-17 92.2 6.5 47 53-100 24-72 (304)
31 cd02989 Phd_like_TxnDC9 Phosdu 99.4 1.4E-12 3.1E-17 80.3 6.3 47 53-100 5-51 (113)
32 cd03005 PDI_a_ERp46 PDIa famil 99.4 1E-12 2.2E-17 78.5 5.5 43 55-100 3-45 (102)
33 cd02963 TRX_DnaJ TRX domain, D 99.4 6.7E-13 1.4E-17 81.4 4.7 42 59-100 10-53 (111)
34 cd02986 DLP Dim1 family, Dim1- 99.4 1.3E-12 2.7E-17 80.7 5.5 41 60-100 2-43 (114)
35 TIGR00424 APS_reduc 5'-adenyly 99.3 2.1E-12 4.6E-17 95.9 6.6 48 52-100 351-400 (463)
36 cd02998 PDI_a_ERp38 PDIa famil 99.3 1.9E-12 4.1E-17 77.4 4.7 43 58-100 5-47 (105)
37 PTZ00051 thioredoxin; Provisio 99.3 4.1E-12 8.9E-17 75.5 6.2 46 54-100 2-47 (98)
38 cd02997 PDI_a_PDIR PDIa family 99.3 4E-12 8.7E-17 76.0 5.3 43 55-99 3-45 (104)
39 cd02984 TRX_PICOT TRX domain, 99.3 6.3E-12 1.4E-16 74.5 5.5 41 59-99 1-42 (97)
40 cd02987 Phd_like_Phd Phosducin 99.3 8.1E-12 1.8E-16 82.4 6.4 50 51-100 61-112 (175)
41 PLN02309 5'-adenylylsulfate re 99.3 8.9E-12 1.9E-16 92.5 6.6 48 52-100 345-394 (457)
42 cd03000 PDI_a_TMX3 PDIa family 99.3 4.9E-12 1.1E-16 76.4 3.8 39 60-100 6-44 (104)
43 KOG0908|consensus 99.3 6.7E-12 1.4E-16 86.3 4.9 48 53-100 2-50 (288)
44 cd02950 TxlA TRX-like protein 99.3 7.5E-12 1.6E-16 80.0 4.4 40 60-100 10-49 (142)
45 PRK10996 thioredoxin 2; Provis 99.2 2.4E-11 5.2E-16 77.3 6.2 45 53-99 36-80 (139)
46 TIGR01126 pdi_dom protein disu 99.2 1.5E-11 3.2E-16 73.1 4.8 41 59-100 2-42 (102)
47 TIGR01295 PedC_BrcD bacterioci 99.2 2.4E-11 5.2E-16 75.9 5.7 41 58-99 11-51 (122)
48 TIGR02187 GlrX_arch Glutaredox 99.2 3.8E-11 8.3E-16 81.2 5.9 82 9-99 79-161 (215)
49 TIGR01068 thioredoxin thioredo 99.2 4.7E-11 1E-15 70.6 5.3 42 59-100 2-43 (101)
50 cd02952 TRP14_like Human TRX-r 99.2 4.5E-11 9.9E-16 74.5 5.1 44 57-100 6-57 (119)
51 cd02988 Phd_like_VIAF Phosduci 99.2 6.8E-11 1.5E-15 79.1 6.1 48 52-100 82-131 (192)
52 cd03065 PDI_b_Calsequestrin_N 99.2 4.1E-11 9E-16 74.7 4.5 47 53-100 10-60 (120)
53 cd02953 DsbDgamma DsbD gamma f 99.2 4.4E-11 9.6E-16 72.0 4.2 37 61-98 2-41 (104)
54 cd02961 PDI_a_family Protein D 99.1 1.1E-10 2.4E-15 68.5 5.5 41 59-100 4-44 (101)
55 TIGR01130 ER_PDI_fam protein d 99.1 9.5E-11 2.1E-15 85.8 5.6 42 57-99 5-46 (462)
56 KOG1731|consensus 99.1 1.1E-11 2.3E-16 93.0 0.2 47 54-100 40-86 (606)
57 PTZ00102 disulphide isomerase; 99.1 1.4E-10 3E-15 85.7 5.5 44 55-99 34-77 (477)
58 cd02959 ERp19 Endoplasmic reti 99.1 1.9E-10 4.2E-15 71.3 5.3 29 70-98 18-46 (117)
59 cd03008 TryX_like_RdCVF Trypar 99.1 1.1E-10 2.3E-15 75.1 3.7 29 70-98 24-52 (146)
60 cd03007 PDI_a_ERp29_N PDIa fam 99.1 3.1E-10 6.7E-15 70.4 5.2 43 54-98 3-50 (116)
61 cd02965 HyaE HyaE family; HyaE 99.1 2.4E-10 5.3E-15 70.3 4.3 42 58-100 15-58 (111)
62 TIGR02738 TrbB type-F conjugat 99.0 2.5E-10 5.4E-15 73.9 4.2 29 72-100 51-79 (153)
63 cd02949 TRX_NTR TRX domain, no 99.0 6.6E-10 1.4E-14 66.2 5.0 38 63-100 5-42 (97)
64 cd02967 mauD Methylamine utili 99.0 4.2E-10 9.1E-15 68.4 3.5 29 71-99 21-49 (114)
65 cd02951 SoxW SoxW family; SoxW 99.0 1.1E-09 2.5E-14 67.9 4.9 34 61-94 4-37 (125)
66 cd02975 PfPDO_like_N Pyrococcu 99.0 6.9E-10 1.5E-14 68.3 3.8 36 63-99 15-50 (113)
67 PTZ00062 glutaredoxin; Provisi 99.0 1.6E-09 3.4E-14 73.2 5.5 43 58-100 4-46 (204)
68 cd02964 TryX_like_family Trypa 98.9 9E-10 2E-14 69.1 3.6 29 71-99 17-45 (132)
69 KOG4277|consensus 98.9 2.8E-10 6.1E-15 80.6 1.2 30 71-100 43-72 (468)
70 KOG0191|consensus 98.9 1.7E-09 3.6E-14 78.7 5.0 41 60-100 36-76 (383)
71 cd03009 TryX_like_TryX_NRX Try 98.9 1.7E-09 3.7E-14 67.5 3.4 29 71-99 18-46 (131)
72 PRK15412 thiol:disulfide inter 98.9 3E-09 6.4E-14 70.5 4.2 29 70-98 67-95 (185)
73 cd02947 TRX_family TRX family; 98.8 5E-09 1.1E-13 60.2 4.4 37 62-99 2-38 (93)
74 cd03010 TlpA_like_DsbE TlpA-li 98.8 3.7E-09 8.1E-14 65.5 4.1 29 71-99 25-53 (127)
75 TIGR00412 redox_disulf_2 small 98.8 4.5E-09 9.7E-14 60.4 3.1 26 75-100 2-27 (76)
76 PRK14018 trifunctional thiored 98.8 4.9E-09 1.1E-13 79.1 4.0 32 69-100 54-85 (521)
77 PHA02125 thioredoxin-like prot 98.8 6.6E-09 1.4E-13 59.4 3.4 23 75-97 2-24 (75)
78 TIGR02740 TraF-like TraF-like 98.8 1.2E-08 2.7E-13 71.4 4.9 31 70-100 165-195 (271)
79 PLN02919 haloacid dehalogenase 98.8 1.5E-08 3.3E-13 81.8 5.9 31 70-100 419-449 (1057)
80 cd03012 TlpA_like_DipZ_like Tl 98.7 1E-08 2.3E-13 63.7 3.6 30 71-100 23-52 (126)
81 TIGR00385 dsbE periplasmic pro 98.7 1.2E-08 2.6E-13 66.8 4.1 30 70-99 62-91 (173)
82 PRK13728 conjugal transfer pro 98.7 9.9E-09 2.1E-13 68.1 3.6 26 75-100 73-98 (181)
83 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 2.1E-08 4.6E-13 61.6 3.7 38 61-99 11-48 (123)
84 PTZ00056 glutathione peroxidas 98.7 2E-08 4.3E-13 67.4 3.3 30 71-100 39-68 (199)
85 cd00340 GSH_Peroxidase Glutath 98.6 2.3E-08 5E-13 64.1 3.3 29 71-100 22-50 (152)
86 TIGR02661 MauD methylamine deh 98.6 3.6E-08 7.8E-13 65.6 4.0 30 70-99 73-102 (189)
87 KOG0912|consensus 98.6 2.5E-08 5.4E-13 70.6 3.2 40 59-99 2-41 (375)
88 PRK00293 dipZ thiol:disulfide 98.6 1.1E-07 2.3E-12 72.7 6.5 40 54-93 454-496 (571)
89 cd02982 PDI_b'_family Protein 98.6 8.4E-08 1.8E-12 57.2 4.8 30 71-100 12-41 (103)
90 TIGR00411 redox_disulf_1 small 98.6 4.7E-08 1E-12 56.0 3.5 27 74-100 2-28 (82)
91 PF08534 Redoxin: Redoxin; In 98.6 4.5E-08 9.8E-13 61.9 3.6 30 70-99 27-57 (146)
92 TIGR02540 gpx7 putative glutat 98.6 5.1E-08 1.1E-12 62.5 3.1 30 71-100 22-51 (153)
93 COG0526 TrxA Thiol-disulfide i 98.6 6.6E-08 1.4E-12 56.9 3.3 30 71-100 32-61 (127)
94 cd02955 SSP411 TRX domain, SSP 98.6 1.2E-07 2.6E-12 59.4 4.4 31 60-91 5-35 (124)
95 PF13899 Thioredoxin_7: Thiore 98.5 1.6E-07 3.4E-12 54.4 4.2 24 70-93 16-39 (82)
96 PLN02399 phospholipid hydroper 98.5 8.7E-08 1.9E-12 66.0 3.5 30 71-100 99-128 (236)
97 PRK03147 thiol-disulfide oxido 98.5 1.8E-07 3.9E-12 60.5 4.7 30 71-100 61-90 (173)
98 cd02966 TlpA_like_family TlpA- 98.5 1.3E-07 2.8E-12 56.2 3.5 30 71-100 19-48 (116)
99 TIGR01626 ytfJ_HI0045 conserve 98.5 1.2E-07 2.6E-12 63.1 2.9 28 71-98 59-86 (184)
100 PLN02412 probable glutathione 98.5 1.5E-07 3.2E-12 61.5 3.2 30 71-100 29-58 (167)
101 cd02973 TRX_GRX_like Thioredox 98.4 2.3E-07 5E-12 51.4 3.0 25 75-99 3-27 (67)
102 cd02960 AGR Anterior Gradient 98.4 5.9E-07 1.3E-11 56.8 4.5 32 62-93 11-45 (130)
103 PF13098 Thioredoxin_2: Thiore 98.4 4.7E-07 1E-11 54.7 3.8 26 70-95 4-29 (112)
104 PTZ00256 glutathione peroxidas 98.3 7E-07 1.5E-11 59.1 3.3 30 71-100 40-70 (183)
105 cd02969 PRX_like1 Peroxiredoxi 98.2 1.6E-06 3.5E-11 56.4 3.5 31 70-100 24-54 (171)
106 TIGR02187 GlrX_arch Glutaredox 98.2 1.7E-06 3.6E-11 58.6 3.4 29 72-100 20-51 (215)
107 cd02968 SCO SCO (an acronym fo 98.2 1.8E-06 4E-11 54.1 3.3 31 70-100 21-52 (142)
108 PRK10606 btuE putative glutath 98.2 1.7E-06 3.6E-11 57.6 2.9 29 71-100 25-53 (183)
109 TIGR02200 GlrX_actino Glutared 98.1 2.3E-06 5E-11 48.2 2.8 24 75-98 2-25 (77)
110 PRK00522 tpx lipid hydroperoxi 98.1 3.7E-06 8.1E-11 54.8 3.5 30 71-100 44-74 (167)
111 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 4.5E-06 9.7E-11 51.0 3.6 30 70-99 24-54 (124)
112 KOG2501|consensus 98.1 1.3E-06 2.9E-11 56.6 1.1 28 71-98 33-60 (157)
113 cd03014 PRX_Atyp2cys Peroxired 98.1 4.6E-06 1E-10 52.5 3.4 30 71-100 26-56 (143)
114 cd02970 PRX_like2 Peroxiredoxi 98.0 7.8E-06 1.7E-10 51.4 3.7 28 72-99 24-52 (149)
115 cd03018 PRX_AhpE_like Peroxire 98.0 7.3E-06 1.6E-10 51.8 3.3 29 72-100 29-58 (149)
116 PTZ00062 glutaredoxin; Provisi 97.9 2.4E-05 5.1E-10 53.0 5.2 75 9-97 64-142 (204)
117 cd03015 PRX_Typ2cys Peroxiredo 97.9 8.5E-06 1.8E-10 53.2 2.9 30 71-100 29-59 (173)
118 KOG0914|consensus 97.9 1.3E-05 2.8E-10 54.7 3.6 49 52-100 124-173 (265)
119 KOG0913|consensus 97.9 1.5E-06 3.3E-11 59.5 -0.8 42 54-98 25-66 (248)
120 TIGR03137 AhpC peroxiredoxin. 97.9 1E-05 2.2E-10 53.7 2.9 29 71-99 31-60 (187)
121 cd03017 PRX_BCP Peroxiredoxin 97.9 1.7E-05 3.7E-10 49.5 3.3 29 71-99 23-52 (140)
122 cd02971 PRX_family Peroxiredox 97.9 1.4E-05 3.1E-10 49.8 2.9 31 70-100 21-52 (140)
123 TIGR02196 GlrX_YruB Glutaredox 97.7 3.2E-05 6.9E-10 42.7 2.9 22 75-96 2-23 (74)
124 cd03067 PDI_b_PDIR_N PDIb fami 97.7 2E-05 4.4E-10 47.7 2.1 38 1-39 70-111 (112)
125 COG4232 Thiol:disulfide interc 97.7 4.5E-05 9.7E-10 58.2 3.3 36 57-92 459-495 (569)
126 cd01659 TRX_superfamily Thiore 97.6 4.9E-05 1.1E-09 39.6 2.6 22 75-96 1-22 (69)
127 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00014 3E-09 43.0 4.3 28 72-99 13-40 (89)
128 PRK09437 bcp thioredoxin-depen 97.5 9.2E-05 2E-09 47.2 3.3 29 71-99 30-59 (154)
129 PF14595 Thioredoxin_9: Thiore 97.5 0.00023 4.9E-09 44.9 4.8 41 59-99 29-69 (129)
130 PF13848 Thioredoxin_6: Thiore 97.5 0.00074 1.6E-08 43.7 7.0 81 9-100 42-124 (184)
131 cd03023 DsbA_Com1_like DsbA fa 97.5 0.00019 4.1E-09 45.0 3.9 29 71-99 5-33 (154)
132 cd02958 UAS UAS family; UAS is 97.5 0.00024 5.2E-09 43.3 4.2 30 62-91 5-37 (114)
133 PRK10382 alkyl hydroperoxide r 97.4 0.00015 3.2E-09 48.4 3.1 30 71-100 31-61 (187)
134 PF06110 DUF953: Eukaryotic pr 97.3 0.00097 2.1E-08 41.6 5.3 40 59-98 4-53 (119)
135 cd02976 NrdH NrdH-redoxin (Nrd 97.3 0.0003 6.6E-09 38.6 2.8 23 75-97 2-24 (73)
136 smart00594 UAS UAS domain. 97.2 0.0005 1.1E-08 42.6 3.9 31 62-92 15-48 (122)
137 KOG3425|consensus 97.2 0.00096 2.1E-08 41.6 4.6 40 59-98 11-60 (128)
138 PRK15000 peroxidase; Provision 97.1 0.00044 9.5E-09 46.5 2.9 30 71-100 34-64 (200)
139 PF13728 TraF: F plasmid trans 97.1 0.00055 1.2E-08 46.6 3.2 30 71-100 120-149 (215)
140 PRK13190 putative peroxiredoxi 97.1 0.00043 9.3E-09 46.5 2.6 29 71-99 27-56 (202)
141 KOG0911|consensus 97.1 0.00033 7.1E-09 47.9 1.9 43 54-99 3-45 (227)
142 cd02066 GRX_family Glutaredoxi 97.1 0.00084 1.8E-08 36.6 3.2 23 75-97 2-24 (72)
143 cd03016 PRX_1cys Peroxiredoxin 97.0 0.00058 1.3E-08 45.9 2.4 28 73-100 28-55 (203)
144 PRK13599 putative peroxiredoxi 96.9 0.00061 1.3E-08 46.3 2.4 30 71-100 28-58 (215)
145 PTZ00137 2-Cys peroxiredoxin; 96.8 0.0011 2.3E-08 46.5 3.0 30 71-100 98-128 (261)
146 PF03190 Thioredox_DsbH: Prote 96.8 0.0026 5.5E-08 41.7 4.5 32 59-91 26-57 (163)
147 PRK13191 putative peroxiredoxi 96.8 0.001 2.2E-08 45.2 2.7 30 71-100 33-63 (215)
148 cd03007 PDI_a_ERp29_N PDIa fam 96.8 0.0015 3.3E-08 40.5 3.1 32 8-39 81-115 (116)
149 PF00462 Glutaredoxin: Glutare 96.7 0.0017 3.6E-08 35.1 2.7 23 75-97 1-23 (60)
150 PRK13189 peroxiredoxin; Provis 96.7 0.0012 2.6E-08 45.1 2.5 30 71-100 35-65 (222)
151 PHA03050 glutaredoxin; Provisi 96.7 0.0024 5.3E-08 39.0 3.2 23 75-97 15-37 (108)
152 PRK13703 conjugal pilus assemb 96.6 0.0022 4.8E-08 44.7 3.3 30 71-100 143-172 (248)
153 cd03019 DsbA_DsbA DsbA family, 96.6 0.0031 6.7E-08 40.7 3.7 29 71-99 15-43 (178)
154 TIGR02739 TraF type-F conjugat 96.5 0.003 6.6E-08 44.2 3.3 30 71-100 150-179 (256)
155 PTZ00253 tryparedoxin peroxida 96.5 0.0027 5.8E-08 42.5 2.8 30 71-100 36-66 (199)
156 TIGR02189 GlrX-like_plant Glut 96.5 0.0034 7.3E-08 37.7 3.0 23 75-97 10-32 (99)
157 TIGR02190 GlrX-dom Glutaredoxi 96.4 0.0047 1E-07 35.2 3.1 26 72-97 7-32 (79)
158 KOG0912|consensus 96.4 0.0088 1.9E-07 43.0 4.9 37 3-41 70-107 (375)
159 PF02114 Phosducin: Phosducin; 96.0 0.016 3.4E-07 40.8 4.9 49 52-100 125-175 (265)
160 cd03027 GRX_DEP Glutaredoxin ( 96.0 0.0075 1.6E-07 33.7 2.7 23 75-97 3-25 (73)
161 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.0077 1.7E-07 33.5 2.6 23 75-97 2-24 (75)
162 PF13462 Thioredoxin_4: Thiore 95.8 0.014 3E-07 37.0 3.4 29 71-99 12-40 (162)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 95.7 0.013 2.7E-07 39.0 3.1 25 71-95 77-101 (197)
164 PRK10329 glutaredoxin-like pro 95.7 0.017 3.7E-07 33.3 3.2 22 75-96 3-24 (81)
165 cd03029 GRX_hybridPRX5 Glutare 95.6 0.017 3.7E-07 32.1 3.0 23 75-97 3-25 (72)
166 PF00085 Thioredoxin: Thioredo 95.3 0.0086 1.9E-07 34.9 1.2 31 8-38 72-102 (103)
167 PF13192 Thioredoxin_3: Thiore 95.3 0.029 6.2E-07 31.8 3.3 25 76-100 3-27 (76)
168 cd03065 PDI_b_Calsequestrin_N 95.2 0.016 3.5E-07 36.0 2.2 29 9-38 89-117 (120)
169 cd03003 PDI_a_ERdj5_N PDIa fam 95.1 0.026 5.5E-07 33.3 2.9 28 9-36 74-101 (101)
170 TIGR00365 monothiol glutaredox 95.1 0.039 8.4E-07 32.9 3.7 33 63-97 5-41 (97)
171 PRK10638 glutaredoxin 3; Provi 94.9 0.035 7.6E-07 31.8 2.9 23 75-97 4-26 (83)
172 TIGR02194 GlrX_NrdH Glutaredox 94.9 0.025 5.5E-07 31.5 2.2 21 76-96 2-22 (72)
173 PF02966 DIM1: Mitosis protein 94.8 0.11 2.4E-06 32.9 5.2 44 56-99 4-48 (133)
174 PRK15317 alkyl hydroperoxide r 94.8 0.11 2.3E-06 39.5 6.1 79 9-99 62-144 (517)
175 PRK10877 protein disulfide iso 94.7 0.05 1.1E-06 37.4 3.8 27 71-97 107-133 (232)
176 TIGR03143 AhpF_homolog putativ 94.7 0.15 3.2E-06 39.1 6.7 79 8-99 420-504 (555)
177 cd03028 GRX_PICOT_like Glutare 94.6 0.054 1.2E-06 31.7 3.2 17 81-97 21-37 (90)
178 cd02996 PDI_a_ERp44 PDIa famil 94.5 0.04 8.7E-07 32.8 2.6 28 9-36 80-108 (108)
179 PRK10954 periplasmic protein d 94.5 0.039 8.4E-07 37.1 2.8 28 71-98 37-67 (207)
180 cd03006 PDI_a_EFP1_N PDIa fami 94.4 0.033 7.1E-07 34.2 2.1 28 9-36 86-113 (113)
181 KOG4277|consensus 94.4 0.34 7.4E-06 35.2 7.4 32 9-41 102-133 (468)
182 PRK10824 glutaredoxin-4; Provi 94.2 0.095 2.1E-06 32.4 3.8 33 62-97 7-44 (115)
183 cd03013 PRX5_like Peroxiredoxi 94.0 0.052 1.1E-06 34.9 2.6 28 72-99 30-59 (155)
184 COG0695 GrxC Glutaredoxin and 94.0 0.066 1.4E-06 30.8 2.7 23 75-97 3-25 (80)
185 KOG3414|consensus 94.0 0.15 3.2E-06 32.3 4.3 43 57-99 8-51 (142)
186 cd02999 PDI_a_ERp44_like PDIa 93.5 0.073 1.6E-06 31.7 2.4 27 9-36 74-100 (100)
187 cd02995 PDI_a_PDI_a'_C PDIa fa 93.5 0.08 1.7E-06 30.8 2.5 29 8-36 74-104 (104)
188 cd02981 PDI_b_family Protein D 93.5 0.35 7.5E-06 28.0 5.3 41 56-100 3-43 (97)
189 cd03005 PDI_a_ERp46 PDIa famil 93.3 0.075 1.6E-06 30.9 2.2 28 9-36 75-102 (102)
190 cd03004 PDI_a_ERdj5_C PDIa fam 93.3 0.088 1.9E-06 31.0 2.5 28 9-36 75-104 (104)
191 TIGR01126 pdi_dom protein disu 93.2 0.13 2.8E-06 29.7 3.1 32 8-39 70-101 (102)
192 PRK11657 dsbG disulfide isomer 93.1 0.15 3.3E-06 35.4 3.8 27 71-97 117-143 (251)
193 cd03002 PDI_a_MPD1_like PDI fa 93.1 0.12 2.7E-06 30.4 3.0 29 9-37 76-109 (109)
194 cd02994 PDI_a_TMX PDIa family, 92.8 0.15 3.3E-06 29.8 3.0 29 9-38 73-101 (101)
195 KOG1672|consensus 92.6 0.33 7.1E-06 32.9 4.7 46 54-100 68-113 (211)
196 cd02963 TRX_DnaJ TRX domain, D 92.5 0.15 3.2E-06 30.8 2.7 30 9-38 81-110 (111)
197 cd02997 PDI_a_PDIR PDIa family 92.2 0.15 3.2E-06 29.7 2.5 28 9-36 77-104 (104)
198 cd03001 PDI_a_P5 PDIa family, 92.2 0.21 4.5E-06 29.0 3.1 29 8-36 73-102 (103)
199 TIGR03140 AhpF alkyl hydropero 92.1 0.62 1.3E-05 35.4 6.2 80 8-99 62-145 (515)
200 cd02991 UAS_ETEA UAS family, E 92.0 0.24 5.2E-06 30.5 3.2 21 69-89 15-39 (116)
201 KOG1752|consensus 92.0 0.39 8.5E-06 29.2 4.1 32 62-96 6-37 (104)
202 PF11009 DUF2847: Protein of u 91.8 0.87 1.9E-05 27.8 5.5 43 56-98 3-46 (105)
203 cd02956 ybbN ybbN protein fami 90.8 0.29 6.2E-06 28.2 2.6 28 9-36 68-95 (96)
204 PF01216 Calsequestrin: Calseq 90.6 1.7 3.7E-05 32.0 6.8 76 9-99 114-190 (383)
205 PRK11509 hydrogenase-1 operon 90.5 0.27 5.9E-06 31.1 2.5 33 9-41 93-125 (132)
206 TIGR01068 thioredoxin thioredo 90.4 0.35 7.5E-06 27.7 2.8 31 9-39 70-100 (101)
207 PRK10996 thioredoxin 2; Provis 89.2 0.39 8.4E-06 30.2 2.5 31 9-39 108-138 (139)
208 cd03060 GST_N_Omega_like GST_N 89.1 0.46 9.9E-06 26.0 2.5 22 76-97 2-23 (71)
209 cd02961 PDI_a_family Protein D 88.7 0.53 1.1E-05 26.6 2.7 29 8-36 72-101 (101)
210 PTZ00443 Thioredoxin domain-co 88.7 0.27 5.9E-06 33.8 1.6 32 9-40 108-139 (224)
211 cd02953 DsbDgamma DsbD gamma f 87.7 0.76 1.6E-05 27.0 2.9 29 9-37 74-104 (104)
212 PRK09381 trxA thioredoxin; Pro 87.6 0.6 1.3E-05 27.6 2.5 31 9-39 77-107 (109)
213 cd03000 PDI_a_TMX3 PDIa family 87.4 0.77 1.7E-05 27.0 2.8 30 9-39 74-103 (104)
214 cd02993 PDI_a_APS_reductase PD 87.2 0.88 1.9E-05 27.1 3.0 28 9-36 80-109 (109)
215 cd02981 PDI_b_family Protein D 86.8 1.1 2.4E-05 25.8 3.3 31 8-38 65-96 (97)
216 cd02998 PDI_a_ERp38 PDIa famil 86.2 1.5 3.2E-05 25.3 3.6 28 9-36 77-105 (105)
217 TIGR00424 APS_reduc 5'-adenyly 86.2 0.86 1.9E-05 34.7 3.1 30 9-38 430-461 (463)
218 cd02949 TRX_NTR TRX domain, no 86.1 0.7 1.5E-05 26.9 2.2 29 9-37 69-97 (97)
219 PF07912 ERp29_N: ERp29, N-ter 85.8 1.3 2.8E-05 27.9 3.2 40 2-41 78-120 (126)
220 cd02947 TRX_family TRX family; 85.5 0.82 1.8E-05 25.2 2.2 30 8-37 64-93 (93)
221 PHA02278 thioredoxin-like prot 85.5 0.73 1.6E-05 27.7 2.0 27 9-35 74-100 (103)
222 PLN02309 5'-adenylylsulfate re 84.4 1.1 2.4E-05 34.0 3.0 30 9-38 424-455 (457)
223 cd03051 GST_N_GTT2_like GST_N 83.9 1 2.2E-05 24.3 2.0 21 76-96 2-22 (74)
224 PF00837 T4_deiodinase: Iodoth 83.9 4.2 9.1E-05 28.3 5.4 49 51-100 81-131 (237)
225 KOG0910|consensus 83.7 1.1 2.3E-05 29.1 2.3 32 9-40 117-148 (150)
226 TIGR01295 PedC_BrcD bacterioci 83.5 1.2 2.5E-05 27.6 2.3 30 8-37 91-121 (122)
227 cd00570 GST_N_family Glutathio 82.3 1.2 2.7E-05 23.1 2.0 20 77-96 3-22 (71)
228 cd03040 GST_N_mPGES2 GST_N fam 82.1 2 4.4E-05 23.6 2.8 22 76-97 3-24 (77)
229 COG1225 Bcp Peroxiredoxin [Pos 81.5 1.9 4.1E-05 28.2 2.8 28 71-98 30-58 (157)
230 cd03059 GST_N_SspA GST_N famil 80.4 1.9 4E-05 23.4 2.3 22 76-97 2-23 (73)
231 cd03037 GST_N_GRX2 GST_N famil 79.7 1.5 3.2E-05 23.8 1.7 21 77-97 3-23 (71)
232 KOG2603|consensus 78.5 3.5 7.5E-05 30.0 3.6 48 51-99 39-92 (331)
233 KOG2640|consensus 77.9 0.5 1.1E-05 34.1 -0.7 27 71-97 76-102 (319)
234 PF05768 DUF836: Glutaredoxin- 76.8 3.7 8.1E-05 23.3 2.8 24 75-98 2-25 (81)
235 cd02950 TxlA TRX-like protein 76.4 3.9 8.5E-05 25.8 3.1 32 9-40 78-110 (142)
236 cd03041 GST_N_2GST_N GST_N fam 76.2 2.5 5.4E-05 23.5 2.0 22 76-97 3-24 (77)
237 cd03045 GST_N_Delta_Epsilon GS 75.9 2.7 5.8E-05 22.8 2.0 22 76-97 2-23 (74)
238 cd02982 PDI_b'_family Protein 75.4 4.2 9E-05 23.4 2.9 32 8-39 69-102 (103)
239 COG1651 DsbG Protein-disulfide 74.7 4.1 8.8E-05 27.6 3.1 25 72-96 85-109 (244)
240 KOG3170|consensus 74.6 14 0.0003 25.4 5.5 48 52-100 91-140 (240)
241 cd02965 HyaE HyaE family; HyaE 74.2 2.8 6E-05 25.8 1.9 25 9-33 85-109 (111)
242 COG4545 Glutaredoxin-related p 72.9 3.2 6.9E-05 24.0 1.8 22 76-97 5-26 (85)
243 COG1331 Highly conserved prote 68.7 7.7 0.00017 31.0 3.7 32 59-91 32-63 (667)
244 PF06053 DUF929: Domain of unk 68.2 3.6 7.9E-05 28.8 1.7 22 69-90 56-77 (249)
245 COG0295 Cdd Cytidine deaminase 67.4 3.6 7.8E-05 26.2 1.4 15 80-94 85-99 (134)
246 KOG0908|consensus 66.5 7.1 0.00015 27.7 2.8 31 9-40 76-106 (288)
247 COG3019 Predicted metal-bindin 63.2 9.7 0.00021 24.6 2.7 24 73-96 26-49 (149)
248 COG4752 Uncharacterized protei 62.2 19 0.00041 23.6 4.0 26 60-85 122-147 (190)
249 cd03056 GST_N_4 GST_N family, 61.1 8.2 0.00018 20.6 2.0 20 77-96 3-22 (73)
250 TIGR00385 dsbE periplasmic pro 61.1 10 0.00022 24.5 2.7 33 7-39 138-170 (173)
251 PRK14018 trifunctional thiored 59.7 8.6 0.00019 29.8 2.4 35 6-40 139-173 (521)
252 KOG3171|consensus 59.7 29 0.00063 24.2 4.7 51 50-100 136-188 (273)
253 PF09936 Methyltrn_RNA_4: SAM- 59.3 7.8 0.00017 26.0 1.9 24 59-82 120-143 (185)
254 PRK15412 thiol:disulfide inter 58.9 14 0.0003 24.2 3.1 34 6-39 142-175 (185)
255 PLN02182 cytidine deaminase 58.9 5.1 0.00011 29.4 1.0 15 80-94 129-143 (339)
256 cd02983 P5_C P5 family, C-term 58.5 16 0.00034 22.8 3.1 21 23-43 98-118 (130)
257 PF13848 Thioredoxin_6: Thiore 58.2 16 0.00035 23.1 3.3 36 3-38 147-184 (184)
258 PF04592 SelP_N: Selenoprotein 58.2 13 0.00027 26.0 2.8 34 66-99 21-54 (238)
259 PRK12411 cytidine deaminase; P 57.1 6.8 0.00015 24.7 1.3 14 81-94 84-97 (132)
260 cd03055 GST_N_Omega GST_N fami 55.7 17 0.00036 20.7 2.8 23 75-97 19-41 (89)
261 COG2143 Thioredoxin-related pr 55.2 18 0.00038 24.0 3.0 24 70-93 41-64 (182)
262 PRK03147 thiol-disulfide oxido 54.6 16 0.00035 23.1 2.8 32 7-38 139-170 (173)
263 KOG0833|consensus 54.4 9 0.0002 25.4 1.6 18 79-96 101-118 (173)
264 PRK05578 cytidine deaminase; V 53.6 8.6 0.00019 24.2 1.4 15 80-94 83-97 (131)
265 cd02951 SoxW SoxW family; SoxW 52.4 24 0.00053 21.1 3.2 33 7-39 85-118 (125)
266 PRK06848 hypothetical protein; 51.8 9.3 0.0002 24.3 1.3 14 80-93 94-107 (139)
267 PF02630 SCO1-SenC: SCO1/SenC; 51.3 23 0.00049 23.0 3.1 30 70-99 51-81 (174)
268 PF09499 RE_ApaLI: ApaLI-like 51.0 49 0.0011 22.2 4.6 38 59-96 130-168 (191)
269 cd03066 PDI_b_Calsequestrin_mi 49.9 51 0.0011 19.2 5.3 41 55-99 3-44 (102)
270 PF00255 GSHPx: Glutathione pe 48.9 23 0.00049 21.6 2.6 29 70-99 20-48 (108)
271 PLN02399 phospholipid hydroper 48.3 22 0.00047 24.7 2.8 32 8-39 202-233 (236)
272 PLN02412 probable glutathione 48.2 28 0.0006 22.4 3.1 32 8-39 132-163 (167)
273 PLN02402 cytidine deaminase 47.8 30 0.00064 25.1 3.4 23 72-94 93-115 (303)
274 KOG4163|consensus 44.6 19 0.00042 27.6 2.2 29 52-85 465-493 (551)
275 cd03069 PDI_b_ERp57 PDIb famil 42.6 70 0.0015 18.7 5.0 39 57-99 5-43 (104)
276 TIGR02540 gpx7 putative glutat 42.5 35 0.00076 21.3 2.9 29 10-38 123-151 (153)
277 cd03054 GST_N_Metaxin GST_N fa 42.3 20 0.00044 19.2 1.6 17 80-96 13-29 (72)
278 cd03068 PDI_b_ERp72 PDIb famil 41.4 77 0.0017 18.8 5.6 42 55-99 3-44 (107)
279 PF13120 DUF3974: Domain of un 40.8 22 0.00047 21.5 1.6 22 78-99 32-53 (126)
280 cd00862 ProRS_anticodon_zinc P 40.8 27 0.00059 23.3 2.3 29 54-87 128-158 (202)
281 PF11539 DUF3228: Protein of u 39.7 16 0.00035 24.7 1.0 31 54-85 22-55 (197)
282 cd03072 PDI_b'_ERp44 PDIb' fam 39.6 80 0.0017 18.9 4.1 39 58-99 4-42 (111)
283 cd05855 Ig_TrkB_d5 Fifth domai 39.5 19 0.00041 20.4 1.2 12 9-20 13-24 (79)
284 PRK09027 cytidine deaminase; P 39.5 54 0.0012 23.7 3.7 19 76-94 122-140 (295)
285 PRK08298 cytidine deaminase; V 39.1 19 0.00042 22.8 1.3 14 80-93 86-99 (136)
286 PRK15317 alkyl hydroperoxide r 39.1 91 0.002 23.8 5.1 37 62-98 9-45 (517)
287 cd05853 Ig6_Contactin-4 Sixth 38.9 24 0.00053 20.3 1.6 17 4-20 12-28 (85)
288 cd03053 GST_N_Phi GST_N family 38.7 41 0.00089 18.0 2.5 22 75-96 2-23 (76)
289 COG3118 Thioredoxin domain-con 37.6 43 0.00093 24.3 2.9 34 9-42 99-132 (304)
290 cd03052 GST_N_GDAP1 GST_N fami 37.5 32 0.00069 18.8 1.9 22 76-97 2-23 (73)
291 cd01283 cytidine_deaminase Cyt 36.8 78 0.0017 18.8 3.7 13 81-93 78-90 (112)
292 TIGR03143 AhpF_homolog putativ 36.5 1.1E+02 0.0023 23.7 5.2 36 63-98 357-393 (555)
293 PF06122 TraH: Conjugative rel 36.3 23 0.00049 26.0 1.5 21 80-100 94-114 (361)
294 TIGR01354 cyt_deam_tetra cytid 35.3 25 0.00055 21.8 1.4 15 80-94 80-94 (127)
295 TIGR01355 cyt_deam_dimer cytid 34.2 70 0.0015 23.0 3.6 19 76-94 94-112 (283)
296 COG0266 Nei Formamidopyrimidin 34.1 10 0.00022 27.0 -0.6 13 26-38 141-153 (273)
297 TIGR01626 ytfJ_HI0045 conserve 33.2 54 0.0012 21.9 2.8 29 7-35 146-175 (184)
298 PF09180 ProRS-C_1: Prolyl-tRN 33.1 23 0.0005 19.6 0.8 20 61-85 2-21 (68)
299 KOG0913|consensus 32.8 41 0.00089 23.6 2.2 30 9-39 96-125 (248)
300 cd05885 Ig2_Necl-4 Second immu 31.8 29 0.00063 19.8 1.1 13 8-20 14-26 (80)
301 COG4630 XdhA Xanthine dehydrog 31.8 10 0.00022 28.6 -1.0 29 10-39 8-36 (493)
302 PF15468 DUF4636: Domain of un 30.9 23 0.0005 24.5 0.7 10 82-91 197-206 (243)
303 COG0386 BtuE Glutathione perox 30.4 43 0.00094 22.0 1.9 17 70-86 24-40 (162)
304 PRK14811 formamidopyrimidine-D 30.3 8.7 0.00019 27.0 -1.5 10 82-91 257-266 (269)
305 PF15379 DUF4606: Domain of un 29.6 58 0.0013 19.8 2.2 18 80-97 31-48 (104)
306 PF00352 TBP: Transcription fa 29.5 64 0.0014 18.4 2.4 28 9-38 50-77 (86)
307 PHA02151 hypothetical protein 29.4 40 0.00086 22.4 1.6 14 71-84 203-216 (217)
308 COG4232 Thiol:disulfide interc 28.0 77 0.0017 25.1 3.1 32 8-39 535-567 (569)
309 PRK01103 formamidopyrimidine/5 27.4 14 0.0003 26.0 -0.9 11 27-37 142-152 (274)
310 TIGR03140 AhpF alkyl hydropero 27.3 1.8E+02 0.004 22.2 5.1 36 63-98 10-45 (515)
311 PRK08661 prolyl-tRNA synthetas 26.9 59 0.0013 24.8 2.4 30 52-85 404-433 (477)
312 cd05863 Ig2_VEGFR-3 Second imm 26.8 40 0.00086 18.3 1.1 12 9-20 13-24 (67)
313 TIGR02451 anti_sig_ChrR anti-s 26.3 56 0.0012 22.2 2.0 20 80-99 28-47 (215)
314 PF14369 zf-RING_3: zinc-finge 26.1 14 0.0003 17.8 -0.7 8 82-89 4-11 (35)
315 PF07700 HNOB: Heme NO binding 26.0 1.1E+02 0.0025 19.6 3.3 29 72-100 128-156 (171)
316 cd03058 GST_N_Tau GST_N family 25.2 84 0.0018 16.7 2.3 20 77-96 3-22 (74)
317 PF14437 MafB19-deam: MafB19-l 25.0 59 0.0013 21.0 1.8 22 72-93 100-121 (146)
318 COG1062 AdhC Zn-dependent alco 25.0 33 0.00071 25.5 0.7 33 52-88 64-96 (366)
319 cd03073 PDI_b'_ERp72_ERp57 PDI 24.9 1.6E+02 0.0036 17.6 3.8 17 23-39 93-110 (111)
320 PF02794 HlyC: RTX toxin acylt 24.9 98 0.0021 19.5 2.8 59 16-95 42-102 (133)
321 TIGR03707 PPK2_P_aer polyphosp 24.8 95 0.0021 21.5 2.9 19 61-80 124-142 (230)
322 TIGR00408 proS_fam_I prolyl-tR 24.7 69 0.0015 24.4 2.4 30 52-85 398-427 (472)
323 PF13778 DUF4174: Domain of un 24.6 1.7E+02 0.0036 17.8 3.7 37 2-38 74-110 (118)
324 cd04971 Ig_TrKABC_d5 Fifth dom 24.4 47 0.001 18.6 1.1 12 9-20 13-24 (81)
325 KOG1348|consensus 23.7 2.6E+02 0.0057 21.3 5.1 37 3-40 96-138 (477)
326 PRK13945 formamidopyrimidine-D 23.4 20 0.00042 25.4 -0.7 12 27-38 151-162 (282)
327 cd05875 Ig6_hNeurofascin_like 23.1 78 0.0017 17.3 1.9 11 9-19 13-23 (77)
328 PRK09481 sspA stringent starva 23.1 1E+02 0.0022 20.2 2.8 26 72-97 8-33 (211)
329 PF14424 Toxin-deaminase: The 23.0 1.1E+02 0.0023 19.3 2.7 20 76-95 99-120 (133)
330 KOG2983|consensus 21.7 47 0.001 23.9 0.9 28 70-98 240-267 (334)
331 PF03976 PPK2: Polyphosphate k 21.4 1.1E+02 0.0024 21.0 2.7 19 61-80 124-142 (228)
No 1
>KOG0190|consensus
Probab=99.72 E-value=1.1e-17 Score=123.82 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=61.1
Q ss_pred CccCHHHHHHHhhCCCCCC-----CCCcccccC--CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 25 RKETVSAFVNFLKDPKGDI-----PWEEDESAQ--AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 25 g~~~~~~l~~f~~~~~~~~-----~~~~~~~~~--~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
+.++.++|..|+++..... .+++.|+.. ..|.++.++||++++.+.++.|||.|||||||||+++.|.|++||
T Consensus 331 e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLA 410 (493)
T KOG0190|consen 331 EELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELA 410 (493)
T ss_pred ccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHH
Confidence 4577778999988775322 234444433 346677899999999999999999999999999999999999999
Q ss_pred hhC
Q psy3441 98 DNL 100 (100)
Q Consensus 98 ~~l 100 (100)
+.|
T Consensus 411 e~~ 413 (493)
T KOG0190|consen 411 EKY 413 (493)
T ss_pred HHh
Confidence 875
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.59 E-value=3.2e-15 Score=92.35 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=40.4
Q ss_pred CCeEEcCCHHHHHHHH--hcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLL--KKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~--~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++.+ +.++|++.+ .+.++.+||+||||||++|+.|.|.|+++|+++
T Consensus 9 ~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~ 58 (113)
T cd03006 9 SPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL 58 (113)
T ss_pred CCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 345655 789999873 355699999999999999999999999999864
No 3
>KOG0910|consensus
Probab=99.57 E-value=4.4e-15 Score=95.06 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=43.5
Q ss_pred CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+.+.+..+|++.|.+++.+|||+|||+||+||+.+.|.+++++.+|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~ 90 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEY 90 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhh
Confidence 356677899999999998899999999999999999999999998864
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.56 E-value=2.1e-14 Score=105.92 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=56.3
Q ss_pred cCHHHHHHHhhCCCCCCC-----CCcccc-cCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 27 ETVSAFVNFLKDPKGDIP-----WEEDES-AQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 27 ~~~~~l~~f~~~~~~~~~-----~~~~~~-~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.++|.+|+++...+.. +.+.|+ ....+..+++++|++.+.+.+++|||.||||||++|+.+.|.|+++|+.+
T Consensus 325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~ 404 (477)
T PTZ00102 325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKY 404 (477)
T ss_pred CCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 789999999997653221 111111 12335555899999998777799999999999999999999999998753
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.56 E-value=1e-14 Score=87.85 Aligned_cols=46 Identities=41% Similarity=0.872 Sum_probs=40.7
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+ +.++|++.+.+++++++|.|||+||++|+++.|.|+++++++
T Consensus 3 v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~ 48 (104)
T cd03004 3 VITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARAL 48 (104)
T ss_pred ceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 3444 789999998887789999999999999999999999999764
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.54 E-value=1.7e-14 Score=86.65 Aligned_cols=45 Identities=20% Similarity=0.506 Sum_probs=39.5
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+ +.++|++.+.+. ++++|.|||+||++|+++.|.|+++|+++
T Consensus 3 ~~~l-~~~~f~~~v~~~-~~~~v~f~a~wC~~C~~~~p~~~~~a~~~ 47 (101)
T cd03003 3 IVTL-DRGDFDAAVNSG-EIWFVNFYSPRCSHCHDLAPTWREFAKEM 47 (101)
T ss_pred eEEc-CHhhHHHHhcCC-CeEEEEEECCCChHHHHhHHHHHHHHHHh
Confidence 3445 789999999655 99999999999999999999999999864
No 7
>PHA02278 thioredoxin-like protein
Probab=99.53 E-value=2e-14 Score=87.47 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=35.7
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.++|.+.+.+ +++++|+|||+|||+|+.|.|.+++++++
T Consensus 3 ~~~~~~~~i~~-~~~vvV~F~A~WCgpCk~m~p~l~~l~~~ 42 (103)
T PHA02278 3 SLVDLNTAIRQ-KKDVIVMITQDNCGKCEILKSVIPMFQES 42 (103)
T ss_pred CHHHHHHHHhC-CCcEEEEEECCCCHHHHhHHHHHHHHHhh
Confidence 56789999854 49999999999999999999999999865
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.53 E-value=2e-14 Score=87.04 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=37.7
Q ss_pred CHHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 59 TPQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 59 ~~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++|++.+.+. +++|||+|||+||++|+.+.|.++++++++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~ 44 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC 44 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC
Confidence 568899998764 799999999999999999999999999864
No 9
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=2.4e-14 Score=86.55 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=38.7
Q ss_pred EcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 56 ~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+.+.++|++++.+ +++++|+|||+||++|+.+.|.|+++++++
T Consensus 3 ~i~~~~~~~~~i~~-~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~ 46 (102)
T cd02948 3 EINNQEEWEELLSN-KGLTVVDVYQEWCGPCKAVVSLFKKIKNEL 46 (102)
T ss_pred EccCHHHHHHHHcc-CCeEEEEEECCcCHhHHHHhHHHHHHHHHc
Confidence 35688999998865 589999999999999999999999998754
No 10
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=5.3e-14 Score=102.87 Aligned_cols=94 Identities=24% Similarity=0.436 Sum_probs=66.9
Q ss_pred CCeeEEEccCCcccccCCC-ccCHHHHHHHhhCCCCCCC-----CCcccc-cCCeEEcCCHHHHHHHHhcCCCcEEEEEE
Q psy3441 7 LPYVIKHYKDGEFNKNYER-KETVSAFVNFLKDPKGDIP-----WEEDES-AQAVVHLPTPQALNKLLKKETRPVLIMFY 79 (100)
Q Consensus 7 ~p~ti~~~~~g~~~~~y~g-~~~~~~l~~f~~~~~~~~~-----~~~~~~-~~~~v~~~~~~~f~~~~~~~~~~vlv~F~ 79 (100)
+|..+++-.+|.....+.+ .++.++|.+|+++..+... +...|+ ....+..+++.+|++++.+.+++|||.||
T Consensus 293 ~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~ 372 (462)
T TIGR01130 293 FPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFY 372 (462)
T ss_pred CceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEE
Confidence 4655555445422223444 7899999999988653221 112222 22344555899999999887899999999
Q ss_pred CCCChHHhhhHHHHHHhHhhC
Q psy3441 80 APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 80 a~wC~~C~~~~p~~~~la~~l 100 (100)
|+||++|+.+.|.++++|+.+
T Consensus 373 a~wC~~C~~~~p~~~~~~~~~ 393 (462)
T TIGR01130 373 APWCGHCKNLAPIYEELAEKY 393 (462)
T ss_pred CCCCHhHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 11
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.51 E-value=3.4e-14 Score=87.81 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 60 PQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 60 ~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++|++.+.. .++++||+|||+|||+|+.|.|.++++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~ 43 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDV 43 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 5788888874 4589999999999999999999999999864
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.50 E-value=4.4e-14 Score=85.51 Aligned_cols=45 Identities=42% Similarity=0.965 Sum_probs=40.2
Q ss_pred EEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 55 v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.+ +.++|++.+.+.+++++|.|||+||++|+++.|.|+++++.+
T Consensus 3 ~~l-~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~ 47 (109)
T cd03002 3 YEL-TPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL 47 (109)
T ss_pred EEc-chhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 444 789999999888789999999999999999999999998764
No 13
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.49 E-value=4.9e-14 Score=84.27 Aligned_cols=45 Identities=31% Similarity=0.764 Sum_probs=40.3
Q ss_pred EcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 56 ~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+++++|++.+.+.+++++|.|||+||++|+++.|.|+++++.+
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 47 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKL 47 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHh
Confidence 345789999999887799999999999999999999999998753
No 14
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.48 E-value=9.5e-14 Score=84.74 Aligned_cols=46 Identities=30% Similarity=0.778 Sum_probs=39.2
Q ss_pred eEEcCCHHHHHHHHh--cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLK--KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+ +.++|+.++. +.+++++|.|||+||++|+++.|.|+++++.+
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~ 50 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKL 50 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 3444 7889999985 34689999999999999999999999998754
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.48 E-value=9.3e-14 Score=84.41 Aligned_cols=44 Identities=34% Similarity=0.725 Sum_probs=38.1
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.+ ++++|++.+.. +++++|.||||||++|+++.|.|+++|+.
T Consensus 3 v~~l-~~~~f~~~i~~-~~~vlv~F~a~wC~~C~~~~p~~~~~a~~ 46 (108)
T cd02996 3 IVSL-TSGNIDDILQS-AELVLVNFYADWCRFSQMLHPIFEEAAAK 46 (108)
T ss_pred eEEc-CHhhHHHHHhc-CCEEEEEEECCCCHHHHhhHHHHHHHHHH
Confidence 4444 78999998855 48999999999999999999999999864
No 16
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.48 E-value=8.4e-14 Score=85.88 Aligned_cols=46 Identities=30% Similarity=0.674 Sum_probs=40.6
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++ ++++|++.+.+.+++|+|.|||+||++|+.+.|.|+++++++
T Consensus 3 v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~ 48 (114)
T cd02992 3 VIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDL 48 (114)
T ss_pred eEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 3444 889999999887789999999999999999999999998753
No 17
>KOG0191|consensus
Probab=99.47 E-value=1.7e-13 Score=99.55 Aligned_cols=91 Identities=26% Similarity=0.438 Sum_probs=73.3
Q ss_pred CCeeEEEccCCcccccCCCccCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHH
Q psy3441 7 LPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFC 86 (100)
Q Consensus 7 ~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C 86 (100)
..+|+.+|.+|..+..|.|.++.+.+..|..+...+......+. .++.+ +..+|+..+.+...+++|.||||||+||
T Consensus 101 gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l-~~~~~~~~~~~~~~~~lv~f~aPwc~~c 177 (383)
T KOG0191|consen 101 GFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEG--EVFEL-TKDNFDETVKDSDADWLVEFYAPWCGHC 177 (383)
T ss_pred cCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCC--ceEEc-cccchhhhhhccCcceEEEEeccccHHh
Confidence 35899999999667889999999999999988765433221111 35555 6789999988887999999999999999
Q ss_pred hhhHHHHHHhHhhC
Q psy3441 87 KQLKPEFLAGRDNL 100 (100)
Q Consensus 87 ~~~~p~~~~la~~l 100 (100)
+.+.|.|+++++.+
T Consensus 178 k~l~~~~~~~a~~~ 191 (383)
T KOG0191|consen 178 KKLAPEWEKLAKLL 191 (383)
T ss_pred hhcChHHHHHHHHh
Confidence 99999999999753
No 18
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.46 E-value=1e-13 Score=82.52 Aligned_cols=44 Identities=32% Similarity=0.751 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 57 ~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++.++|++.+.++++++||+||++||++|+.+.|.|+++++++
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~ 46 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEY 46 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccc
Confidence 34789999999986699999999999999999999999999864
No 19
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.45 E-value=1.9e-13 Score=81.89 Aligned_cols=42 Identities=43% Similarity=0.748 Sum_probs=35.8
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.+ +.++|++++.. . ++|+|||+||++|+++.|.|+++++.
T Consensus 3 v~~l-~~~~f~~~~~~--~-~lv~f~a~wC~~C~~~~p~~~~l~~~ 44 (101)
T cd02994 3 VVEL-TDSNWTLVLEG--E-WMIEFYAPWCPACQQLQPEWEEFADW 44 (101)
T ss_pred eEEc-ChhhHHHHhCC--C-EEEEEECCCCHHHHHHhHHHHHHHHh
Confidence 4555 78999998743 3 89999999999999999999999864
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=1.8e-13 Score=82.59 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=33.5
Q ss_pred HHHHHHHh-cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 61 QALNKLLK-KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 61 ~~f~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++.+++. ..+++++|+|||+||++|++++|.|+++++++
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~ 47 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMF 47 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh
Confidence 34555554 46799999999999999999999999999864
No 21
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.44 E-value=3.7e-13 Score=87.05 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=39.0
Q ss_pred EEcCCHHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 55 VHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 55 v~~~~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+...+.++|++.+.. .+++|+|+||||||++|+++.|.|+++++++
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~ 76 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKY 76 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence 444578999998854 4579999999999999999999999999764
No 22
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.43 E-value=2.2e-13 Score=87.15 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=39.6
Q ss_pred EcCCHHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 56 HLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 56 ~~~~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+.++|++.+.+ .+++|||+|||+|||+|+.|.|.++++|+++
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETI 52 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 45688999998864 4689999999999999999999999999864
No 23
>KOG0907|consensus
Probab=99.41 E-value=3.8e-13 Score=82.27 Aligned_cols=33 Identities=33% Similarity=0.803 Sum_probs=29.8
Q ss_pred hcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 68 KKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 68 ~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
...++.++|+|||+|||||+.+.|.|++||.+|
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y 50 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY 50 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC
Confidence 334599999999999999999999999999876
No 24
>KOG0190|consensus
Probab=99.40 E-value=1.5e-13 Score=102.07 Aligned_cols=47 Identities=38% Similarity=0.814 Sum_probs=41.3
Q ss_pred CCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..++++ +.+||++.+... ..+||.|||||||||++++|.|+++|+.|
T Consensus 25 ~~Vl~L-t~dnf~~~i~~~-~~vlVeFYAPWCghck~LaPey~kAA~~L 71 (493)
T KOG0190|consen 25 EDVLVL-TKDNFKETINGH-EFVLVEFYAPWCGHCKALAPEYEKAATEL 71 (493)
T ss_pred cceEEE-ecccHHHHhccC-ceEEEEEEchhhhhhhhhCcHHHHHHHHh
Confidence 445555 789999999876 89999999999999999999999999864
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.40 E-value=7.3e-13 Score=79.21 Aligned_cols=44 Identities=36% Similarity=0.723 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 57 ~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+.++|++.+.+.+++++|.|||+||++|+++.|.|.++++++
T Consensus 4 ~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~ 47 (103)
T cd03001 4 ELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKAL 47 (103)
T ss_pred EcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 34789999998877678999999999999999999999998753
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.40 E-value=3.9e-13 Score=79.80 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=34.5
Q ss_pred HHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 61 QALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 61 ~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++|++.+.++ ++++||+|||+||++|+++.|.++++++.+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~ 41 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEY 41 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 3688888654 689999999999999999999999998753
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.40 E-value=7.8e-13 Score=90.28 Aligned_cols=48 Identities=33% Similarity=0.747 Sum_probs=40.5
Q ss_pred CCeEEcCCHHHHHHHHhcC----CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKKE----TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~----~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..++.+ +.++|++++..+ +++|+|+||||||++|+++.|.|+++++++
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~ 81 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKAL 81 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHc
Confidence 345555 889999988643 479999999999999999999999999864
No 28
>PRK09381 trxA thioredoxin; Provisional
Probab=99.40 E-value=7.3e-13 Score=80.42 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=40.2
Q ss_pred CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++.+ ++++|.+.+.+.+++++|+||++||++|+.+.|.++++++++
T Consensus 4 ~v~~~-~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~ 50 (109)
T PRK09381 4 KIIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY 50 (109)
T ss_pred cceee-ChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 34555 778999877666689999999999999999999999998764
No 29
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.39 E-value=9.5e-13 Score=80.82 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=40.0
Q ss_pred CeEEcCCHHHHHHHHhcC--CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKE--TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~--~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+..+ +.++|.+.+.+. +++++|+||||||++|+.+.|.++++|+++
T Consensus 5 ~v~~i-~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~ 53 (113)
T cd02957 5 EVREI-SSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKY 53 (113)
T ss_pred eEEEE-cHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 34555 559999998765 389999999999999999999999999864
No 30
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.7e-13 Score=92.22 Aligned_cols=47 Identities=32% Similarity=0.671 Sum_probs=39.4
Q ss_pred CeEEcCCHHHHHHHHhc-C-CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKK-E-TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~-~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++.+ |..||+..|.. + .++|||+||||||++|+++.|.+++++.+|
T Consensus 24 ~I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~ 72 (304)
T COG3118 24 GIKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEY 72 (304)
T ss_pred cceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHh
Confidence 35555 78999987743 3 469999999999999999999999998764
No 31
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.38 E-value=1.4e-12 Score=80.33 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=41.4
Q ss_pred CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+..+.+.++|.+.+.+. +.++|+||+|||++|+.+.|.++++++++
T Consensus 5 ~v~~i~~~~~~~~~i~~~-~~vvV~f~a~~c~~C~~~~p~l~~la~~~ 51 (113)
T cd02989 5 KYREVSDEKEFFEIVKSS-ERVVCHFYHPEFFRCKIMDKHLEILAKKH 51 (113)
T ss_pred CeEEeCCHHHHHHHHhCC-CcEEEEEECCCCccHHHHHHHHHHHHHHc
Confidence 456677779999999766 89999999999999999999999999764
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.38 E-value=1e-12 Score=78.45 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=37.0
Q ss_pred EEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 55 v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.+ ++++|++.+.++ .++|.|||+||++|+.+.|.|+++++++
T Consensus 3 ~~l-~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~ 45 (102)
T cd03005 3 LEL-TEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKF 45 (102)
T ss_pred eEC-CHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 444 788999999654 5999999999999999999999998753
No 33
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.38 E-value=6.7e-13 Score=81.37 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=35.8
Q ss_pred CHHHHHHHHh--cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 59 TPQALNKLLK--KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 59 ~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++|++.+. +.+++|+|+||||||++|+.+.|.|+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~ 53 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQEL 53 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHH
Confidence 6788886553 34699999999999999999999999998764
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.37 E-value=1.3e-12 Score=80.66 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 60 PQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 60 ~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+.|++.+.+. +++|+|+|+|+||++|+.|.|.++++|++|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~ 43 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDL 43 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHc
Confidence 35788877654 699999999999999999999999999864
No 35
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.35 E-value=2.1e-12 Score=95.87 Aligned_cols=48 Identities=33% Similarity=0.805 Sum_probs=41.2
Q ss_pred CCeEEcCCHHHHHHHHh--cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLK--KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..++.+ +.+||+.++. +.+++|||+||||||++|+.|.|.|+++|++|
T Consensus 351 ~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~ 400 (463)
T TIGR00424 351 NNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKL 400 (463)
T ss_pred CCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 355555 7899999985 45689999999999999999999999999864
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.34 E-value=1.9e-12 Score=77.38 Aligned_cols=43 Identities=37% Similarity=0.827 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 58 ~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++++|++.+.+.+++++|.|||+||++|+++.|.|+++++.+
T Consensus 5 l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~ 47 (105)
T cd02998 5 LTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVF 47 (105)
T ss_pred cchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 3778999988877679999999999999999999999998753
No 37
>PTZ00051 thioredoxin; Provisional
Probab=99.34 E-value=4.1e-12 Score=75.53 Aligned_cols=46 Identities=26% Similarity=0.608 Sum_probs=39.6
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+..+.+.++|.+++... +.++|.||++||++|+++.|.++++++++
T Consensus 2 v~~i~~~~~~~~~~~~~-~~vli~f~~~~C~~C~~~~~~l~~l~~~~ 47 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQN-ELVIVDFYAEWCGPCKRIAPFYEECSKEY 47 (98)
T ss_pred eEEecCHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhHHHHHHHHHc
Confidence 34566788999988655 89999999999999999999999998753
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.32 E-value=4e-12 Score=76.00 Aligned_cols=43 Identities=58% Similarity=1.169 Sum_probs=37.7
Q ss_pred EEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 55 v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+++ +..+|++.+.+. ++++|.|||+||++|+++.|.+.++++.
T Consensus 3 ~~l-~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~~~~~~~~~~ 45 (104)
T cd02997 3 VHL-TDEDFRKFLKKE-KHVLVMFYAPWCGHCKKMKPEFTKAATE 45 (104)
T ss_pred EEe-chHhHHHHHhhC-CCEEEEEECCCCHHHHHhCHHHHHHHHH
Confidence 444 678999998776 6999999999999999999999999875
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.30 E-value=6.3e-12 Score=74.50 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=36.5
Q ss_pred CHHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 59 TPQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 59 ~~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.++|++.+.+. ++.++|.|||+||++|++|.|.+++++++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~ 42 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKE 42 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 357899988765 69999999999999999999999999876
No 40
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.30 E-value=8.1e-12 Score=82.42 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=42.1
Q ss_pred cCCeEEcCCHHHHHHHHhcCC--CcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 51 AQAVVHLPTPQALNKLLKKET--RPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 51 ~~~~v~~~~~~~f~~~~~~~~--~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
-..++.+.+.++|.+.+...+ .+|+|+|||+||++|+.|.|.+++||+++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~ 112 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY 112 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC
Confidence 345677766599999987653 49999999999999999999999999864
No 41
>PLN02309 5'-adenylylsulfate reductase
Probab=99.28 E-value=8.9e-12 Score=92.49 Aligned_cols=48 Identities=35% Similarity=0.815 Sum_probs=41.0
Q ss_pred CCeEEcCCHHHHHHHHh--cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLK--KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..++.+ +.++|++++. +.+++|||+||||||++|++|.|.|+++|++|
T Consensus 345 ~~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~ 394 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKL 394 (457)
T ss_pred CCcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 355555 8899999885 45689999999999999999999999999864
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.27 E-value=4.9e-12 Score=76.38 Aligned_cols=39 Identities=36% Similarity=0.777 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 60 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++|+++. . ++.++|.|||+||++|+.+.|.|+++++++
T Consensus 6 ~~~~~~~~-~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~ 44 (104)
T cd03000 6 DDSFKDVR-K-EDIWLVDFYAPWCGHCKKLEPVWNEVGAEL 44 (104)
T ss_pred hhhhhhhc-c-CCeEEEEEECCCCHHHHhhChHHHHHHHHH
Confidence 47888853 3 479999999999999999999999998753
No 43
>KOG0908|consensus
Probab=99.27 E-value=6.7e-12 Score=86.26 Aligned_cols=48 Identities=25% Similarity=0.555 Sum_probs=42.1
Q ss_pred CeEEcCCHHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++.+.+..+|...+... .+.|+|+|+|+|||||++.+|.|..+|.+|
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY 50 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY 50 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC
Confidence 356777888999988654 589999999999999999999999999876
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.25 E-value=7.5e-12 Score=79.96 Aligned_cols=40 Identities=25% Similarity=0.689 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 60 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
...|++.+.. ++++||+|||+||++|+.+.|.++++++++
T Consensus 10 ~~~~~~a~~~-gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~ 49 (142)
T cd02950 10 STPPEVALSN-GKPTLVEFYADWCTVCQEMAPDVAKLKQKY 49 (142)
T ss_pred cCCHHHHHhC-CCEEEEEEECCcCHHHHHhHHHHHHHHHHh
Confidence 3457776654 489999999999999999999999998753
No 45
>PRK10996 thioredoxin 2; Provisional
Probab=99.24 E-value=2.4e-11 Score=77.31 Aligned_cols=45 Identities=40% Similarity=0.831 Sum_probs=38.9
Q ss_pred CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.++.. +.++|++++.+ +++|+|+|||+||++|+++.|.|.+++++
T Consensus 36 ~~i~~-~~~~~~~~i~~-~k~vvv~F~a~wC~~C~~~~~~l~~l~~~ 80 (139)
T PRK10996 36 EVINA-TGETLDKLLQD-DLPVVIDFWAPWCGPCRNFAPIFEDVAAE 80 (139)
T ss_pred CCEEc-CHHHHHHHHhC-CCeEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 34554 78899998865 49999999999999999999999999875
No 46
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.24 E-value=1.5e-11 Score=73.11 Aligned_cols=41 Identities=39% Similarity=0.899 Sum_probs=36.7
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++|++.+. .+++++|.||++||++|+++.|.++++++.+
T Consensus 2 ~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~ 42 (102)
T TIGR01126 2 TASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKEL 42 (102)
T ss_pred chhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 6789999987 5599999999999999999999999998753
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.23 E-value=2.4e-11 Score=75.88 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 58 ~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+.++|.+.+.+. +.++|+|+++|||+|+.|.|.+++++++
T Consensus 11 it~~~~~~~i~~~-~~~iv~f~~~~Cp~C~~~~P~l~~~~~~ 51 (122)
T TIGR01295 11 TTVVRALEALDKK-ETATFFIGRKTCPYCRKFSGTLSGVVAQ 51 (122)
T ss_pred cCHHHHHHHHHcC-CcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence 3778899999875 7899999999999999999999999874
No 48
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.20 E-value=3.8e-11 Score=81.21 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=57.5
Q ss_pred eeEEEccCCccc-ccCCCccCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHh
Q psy3441 9 YVIKHYKDGEFN-KNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCK 87 (100)
Q Consensus 9 ~ti~~~~~g~~~-~~y~g~~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~ 87 (100)
+|+++|++|+.. ..|.|..+.+.+.+|++........ ...++.++.+.+-...+..+++.|||+||++|+
T Consensus 79 Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~---------~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~ 149 (215)
T TIGR02187 79 PTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQG---------EPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCP 149 (215)
T ss_pred CEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCC---------CCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcH
Confidence 789999999875 4688988888888888765321110 112355555555443434455559999999999
Q ss_pred hhHHHHHHhHhh
Q psy3441 88 QLKPEFLAGRDN 99 (100)
Q Consensus 88 ~~~p~~~~la~~ 99 (100)
.+.|.+++++.+
T Consensus 150 ~~~~~l~~l~~~ 161 (215)
T TIGR02187 150 YAVLMAHKFALA 161 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.19 E-value=4.7e-11 Score=70.61 Aligned_cols=42 Identities=31% Similarity=0.731 Sum_probs=37.2
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++|.+.+.+.+++++|.||++||++|+.+.|.|+++++++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~ 43 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY 43 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHh
Confidence 567899988876679999999999999999999999998653
No 50
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.18 E-value=4.5e-11 Score=74.45 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHhcC-CCcEEEEEEC-------CCChHHhhhHHHHHHhHhhC
Q psy3441 57 LPTPQALNKLLKKE-TRPVLIMFYA-------PWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 57 ~~~~~~f~~~~~~~-~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~l 100 (100)
+.+.++|.+.+.+. +++++|+||| +||++|+.+.|.+++++.++
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~ 57 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAA 57 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHC
Confidence 44678899988763 5899999999 99999999999999998764
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.18 E-value=6.8e-11 Score=79.10 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=39.4
Q ss_pred CCeEEcCCHHHHHHHHhcC--CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKKE--TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~--~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++.+ +.++|...+..+ +..|+|.||++||++|+.|.|.|++||++|
T Consensus 82 G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~ 131 (192)
T cd02988 82 GEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF 131 (192)
T ss_pred CeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC
Confidence 345555 778998776544 258999999999999999999999999875
No 52
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.17 E-value=4.1e-11 Score=74.74 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=39.8
Q ss_pred CeEEcCCHHHHHHHHhcCCCcEEEEEECCCChH--Hh--hhHHHHHHhHhhC
Q psy3441 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGF--CK--QLKPEFLAGRDNL 100 (100)
Q Consensus 53 ~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~--C~--~~~p~~~~la~~l 100 (100)
.++.+ +.+||++.+.++..++|++|||+||++ |+ .+.|.+.++|.++
T Consensus 10 ~v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~ 60 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV 60 (120)
T ss_pred ceeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH
Confidence 44555 779999999988789999999999977 99 8899999988753
No 53
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.16 E-value=4.4e-11 Score=72.02 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCcEEEEEECCCChHHhhhHHHH---HHhHh
Q psy3441 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF---LAGRD 98 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~ 98 (100)
+.|.+.+.+. +++||+|||+||++|+.|.|.+ .++++
T Consensus 2 ~~~~~~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~ 41 (104)
T cd02953 2 AALAQALAQG-KPVFVDFTADWCVTCKVNEKVVFSDPEVQA 41 (104)
T ss_pred HHHHHHHHcC-CeEEEEEEcchhHHHHHHHHHhcCCHHHHH
Confidence 5678777655 9999999999999999999987 45554
No 54
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.15 E-value=1.1e-10 Score=68.49 Aligned_cols=41 Identities=44% Similarity=0.947 Sum_probs=37.0
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.++|.+.+.+. ++++|.||++||++|+.+.|.|+++++.+
T Consensus 4 ~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 44 (101)
T cd02961 4 TDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKEL 44 (101)
T ss_pred cHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHh
Confidence 678999999887 59999999999999999999999998753
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.13 E-value=9.5e-11 Score=85.76 Aligned_cols=42 Identities=40% Similarity=0.907 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 57 ~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.++.++|+.++.+. +.++|.|||+||++|+++.|.+.++|+.
T Consensus 5 ~l~~~~~~~~i~~~-~~~~v~f~a~wC~~c~~~~~~~~~~a~~ 46 (462)
T TIGR01130 5 VLTKDNFDDFIKSH-EFVLVEFYAPWCGHCKSLAPEYEKAADE 46 (462)
T ss_pred ECCHHHHHHHHhcC-CCEEEEEECCCCHHHHhhhHHHHHHHHH
Confidence 34789999999765 8999999999999999999999998875
No 56
>KOG1731|consensus
Probab=99.12 E-value=1.1e-11 Score=93.02 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=41.6
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.|..++.++|+..+..+.+..+|+||++|||||++++|.|+++|+.+
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl 86 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDL 86 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence 34455899999999888779999999999999999999999999864
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.10 E-value=1.4e-10 Score=85.72 Aligned_cols=44 Identities=39% Similarity=0.873 Sum_probs=38.6
Q ss_pred EEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 55 v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+..++.++|+..+.+. +.++|.|||+||++|+++.|.|+++|+.
T Consensus 34 v~~l~~~~f~~~i~~~-~~~lv~f~a~wC~~Ck~~~p~~~~~a~~ 77 (477)
T PTZ00102 34 VTVLTDSTFDKFITEN-EIVLVKFYAPWCGHCKRLAPEYKKAAKM 77 (477)
T ss_pred cEEcchhhHHHHHhcC-CcEEEEEECCCCHHHHHhhHHHHHHHHH
Confidence 4455889999998765 8999999999999999999999998864
No 58
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.10 E-value=1.9e-10 Score=71.27 Aligned_cols=29 Identities=34% Similarity=1.036 Sum_probs=26.2
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.+++|||+|||+||++|+.|.|.+.+.+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~ 46 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKE 46 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHH
Confidence 45999999999999999999999998654
No 59
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.08 E-value=1.1e-10 Score=75.12 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.+++++|+|||+||++|++++|.+.++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~ 52 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFV 52 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHH
Confidence 35999999999999999999999998765
No 60
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.07 E-value=3.1e-10 Score=70.40 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.5
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEEC--CCCh---HHhhhHHHHHHhHh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYA--PWCG---FCKQLKPEFLAGRD 98 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a--~wC~---~C~~~~p~~~~la~ 98 (100)
++.+ +.+||+++|... +.+||.||| |||+ +|++++|.+.+.+.
T Consensus 3 ~v~L-~~~nF~~~v~~~-~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~ 50 (116)
T cd03007 3 CVDL-DTVTFYKVIPKF-KYSLVKFDTAYPYGEKHEAFTRLAESSASATD 50 (116)
T ss_pred eeEC-ChhhHHHHHhcC-CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC
Confidence 4554 789999999776 899999999 9999 99999999988664
No 61
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.05 E-value=2.4e-10 Score=70.33 Aligned_cols=42 Identities=5% Similarity=-0.040 Sum_probs=37.1
Q ss_pred CCHHHHHHHHhcCCCcEEEEEECCC--ChHHhhhHHHHHHhHhhC
Q psy3441 58 PTPQALNKLLKKETRPVLIMFYAPW--CGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 58 ~~~~~f~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~l 100 (100)
.+..||++.+.. +..++|.|||+| |++|+.+.|.++++|++|
T Consensus 15 ~~~~~~~~~~~~-~~~~v~~f~~~~~~cp~c~~i~P~leela~e~ 58 (111)
T cd02965 15 VDAATLDDWLAA-GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF 58 (111)
T ss_pred cccccHHHHHhC-CCCEEEEecCCcccCcchhhhHhHHHHHHHHC
Confidence 378899988844 488999999997 999999999999999875
No 62
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.04 E-value=2.5e-10 Score=73.94 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=26.7
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+..||+|||+||++|+++.|.++++++++
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~ 79 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQF 79 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 67799999999999999999999998864
No 63
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.02 E-value=6.6e-10 Score=66.24 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=32.4
Q ss_pred HHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 63 LNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 63 f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+..+.+.+++++|.||++||+.|+.+.|.++++++++
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~ 42 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEF 42 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHh
Confidence 44556666799999999999999999999999988753
No 64
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.99 E-value=4.2e-10 Score=68.41 Aligned_cols=29 Identities=34% Similarity=0.687 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+++++|.||++||++|+++.|.++++++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~ 49 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARA 49 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHH
Confidence 58999999999999999999999998764
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.97 E-value=1.1e-09 Score=67.88 Aligned_cols=34 Identities=29% Similarity=0.785 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHH
Q psy3441 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFL 94 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~ 94 (100)
+.+++...+..+++||.|||+||++|+.+.|.+.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~ 37 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYL 37 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhc
Confidence 3455555443389999999999999999998774
No 66
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.97 E-value=6.9e-10 Score=68.28 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 63 LNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 63 f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
|.+.+.+. ..++|.|||+||++|+.+.|.++++++.
T Consensus 15 ~~~~l~~~-~~vvv~f~a~wC~~C~~~~~~l~~la~~ 50 (113)
T cd02975 15 FFKEMKNP-VDLVVFSSKEGCQYCEVTKQLLEELSEL 50 (113)
T ss_pred HHHHhCCC-eEEEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 55545443 7789999999999999999999999864
No 67
>PTZ00062 glutaredoxin; Provisional
Probab=98.95 E-value=1.6e-09 Score=73.16 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=37.4
Q ss_pred CCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 58 ~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+.+.|++++.+....++++|||+||++|++|.|.+.+|++++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~ 46 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF 46 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC
Confidence 3678899998765477899999999999999999999999864
No 68
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.93 E-value=9e-10 Score=69.06 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.+||.|||+||++|+.+.|.+.+++++
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~ 45 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEK 45 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 58999999999999999999999988764
No 69
>KOG4277|consensus
Probab=98.93 E-value=2.8e-10 Score=80.62 Aligned_cols=30 Identities=37% Similarity=0.826 Sum_probs=26.9
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
...|+|+||||||+||+++.|+|.+++.+|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~el 72 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHEL 72 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcch
Confidence 379999999999999999999999987553
No 70
>KOG0191|consensus
Probab=98.92 E-value=1.7e-09 Score=78.72 Aligned_cols=41 Identities=39% Similarity=0.852 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 60 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+|...+...+.+++|+||||||+||+.+.|.|+++++.|
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l 76 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKAL 76 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHh
Confidence 45666666666699999999999999999999999998754
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.88 E-value=1.7e-09 Score=67.50 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=26.3
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++++||+|||+||++|+++.|.+.++.++
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~ 46 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEK 46 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHH
Confidence 48999999999999999999999987654
No 72
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.86 E-value=3e-09 Score=70.48 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=26.6
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.+++++|+|||+||++|+++.|.+.++++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~ 95 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA 95 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998864
No 73
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.85 E-value=5e-09 Score=60.16 Aligned_cols=37 Identities=35% Similarity=0.899 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 62 ALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 62 ~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+|+..+... ++++|.||++||++|+.+.+.+++++++
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 577777766 8999999999999999999999998764
No 74
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.85 E-value=3.7e-09 Score=65.52 Aligned_cols=29 Identities=28% Similarity=0.737 Sum_probs=27.0
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+++++|+|||+||++|+++.|.+++++++
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~ 53 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQ 53 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999765
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.80 E-value=4.5e-09 Score=60.42 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=23.6
Q ss_pred EEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.|+|||+||++|+.+.|.++++++++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~ 27 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEEL 27 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHc
Confidence 37899999999999999999998764
No 76
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.80 E-value=4.9e-09 Score=79.08 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=28.8
Q ss_pred cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 69 KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 69 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+.+++|||+|||+||++|++++|.++++++++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~ 85 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDA 85 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 35699999999999999999999999998753
No 77
>PHA02125 thioredoxin-like protein
Probab=98.78 E-value=6.6e-09 Score=59.44 Aligned_cols=23 Identities=35% Similarity=0.794 Sum_probs=21.1
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|||+||++|+.+.|.+++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~ 24 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE 24 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh
Confidence 78999999999999999998764
No 78
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.76 E-value=1.2e-08 Score=71.42 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=28.5
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++.+||.|||+||++|+++.|.++++++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y 195 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY 195 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc
Confidence 3589999999999999999999999999864
No 79
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=1.5e-08 Score=81.76 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=28.5
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+++|||+|||+||++|+.+.|.+++++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y 449 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKY 449 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHc
Confidence 3599999999999999999999999998864
No 80
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.74 E-value=1e-08 Score=63.67 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++||.|||+||++|++..|.+.++.+++
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~ 52 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKY 52 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHc
Confidence 489999999999999999999999998764
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.74 E-value=1.2e-08 Score=66.83 Aligned_cols=30 Identities=27% Similarity=0.662 Sum_probs=26.9
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+++++|+|||+||++|+++.|.++++++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~ 91 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD 91 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc
Confidence 358999999999999999999999988653
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.74 E-value=9.9e-09 Score=68.10 Aligned_cols=26 Identities=19% Similarity=0.593 Sum_probs=24.0
Q ss_pred EEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
||.|||+||++|+++.|.+.++++++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY 98 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc
Confidence 77799999999999999999998874
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.68 E-value=2.1e-08 Score=61.58 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.+...... +++++|.||++||++|+.+.|.+.+++++
T Consensus 11 ~~~~~~~~~-~k~~vl~F~~~~C~~C~~~~~~l~~~~~~ 48 (123)
T cd03011 11 EQFDLESLS-GKPVLVYFWATWCPVCRFTSPTVNQLAAD 48 (123)
T ss_pred CEeeHHHhC-CCEEEEEEECCcChhhhhhChHHHHHHhh
Confidence 344443333 38999999999999999999999988764
No 84
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.66 E-value=2e-08 Score=67.44 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++|||.|||+||++|++..|.+.++.++|
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~ 68 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVF 68 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHH
Confidence 589999999999999999999999998764
No 85
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.65 E-value=2.3e-08 Score=64.11 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++|||.|||+||+ |+...|.+.++.++|
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~ 50 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKY 50 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHh
Confidence 58999999999999 999999999998764
No 86
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.64 E-value=3.6e-08 Score=65.55 Aligned_cols=30 Identities=37% Similarity=0.634 Sum_probs=26.8
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+++++|.|||+||++|+++.|.+.++.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~ 102 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARA 102 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHh
Confidence 458999999999999999999999988654
No 87
>KOG0912|consensus
Probab=98.63 E-value=2.5e-08 Score=70.64 Aligned_cols=40 Identities=33% Similarity=0.730 Sum_probs=35.9
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.+|++.++.+. ..|+|.|||+||+.++.++|.|+++|..
T Consensus 2 t~~N~~~il~s~-elvfv~FyAdWCrFSq~L~piF~EAa~~ 41 (375)
T KOG0912|consen 2 TSENIDSILDSN-ELVFVNFYADWCRFSQMLKPIFEEAAAK 41 (375)
T ss_pred ccccHHHhhccc-eEEeeeeehhhchHHHHHhHHHHHHHHH
Confidence 457888888775 9999999999999999999999999875
No 88
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.62 E-value=1.1e-07 Score=72.72 Aligned_cols=40 Identities=28% Similarity=0.628 Sum_probs=32.7
Q ss_pred eEEcCCHHHHHHHHhc---CCCcEEEEEECCCChHHhhhHHHH
Q psy3441 54 VVHLPTPQALNKLLKK---ETRPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~---~~~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
-..+.+.+++++.+.. .+++|+|+|||+||++|+.+.+..
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~ 496 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYT 496 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHh
Confidence 4456678889988753 358999999999999999998864
No 89
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.62 E-value=8.4e-08 Score=57.19 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=28.1
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++++.|+++||++|+.+.|.++++|++|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~ 41 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKF 41 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999875
No 90
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.61 E-value=4.7e-08 Score=56.00 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=23.6
Q ss_pred EEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 74 VLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 74 vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+..||++||++|+.+.|.++++++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~ 28 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEM 28 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHh
Confidence 356799999999999999999998653
No 91
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.60 E-value=4.5e-08 Score=61.92 Aligned_cols=30 Identities=27% Similarity=0.733 Sum_probs=27.1
Q ss_pred CCCcEEEEEECC-CChHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAP-WCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~ 99 (100)
.+++++|.||++ ||++|+...|.+.+++++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~ 57 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEK 57 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhh
Confidence 358999999999 999999999999999764
No 92
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.57 E-value=5.1e-08 Score=62.52 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++||.|||+||++|++..|.+.++.++|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~ 51 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHREL 51 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHH
Confidence 588999999999999999999999987654
No 93
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.56 E-value=6.6e-08 Score=56.86 Aligned_cols=30 Identities=33% Similarity=0.794 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++++.||++||++|+.+.|.+.++++++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~ 61 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEY 61 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHh
Confidence 489999999999999999999999998753
No 94
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.55 E-value=1.2e-07 Score=59.44 Aligned_cols=31 Identities=16% Similarity=0.523 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCcEEEEEECCCChHHhhhHH
Q psy3441 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91 (100)
Q Consensus 60 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p 91 (100)
.+.+.....+. ++|||+|+|+||+.|+.|.+
T Consensus 5 ~eal~~Ak~~~-KpVll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 5 EEAFEKARRED-KPIFLSIGYSTCHWCHVMEH 35 (124)
T ss_pred HHHHHHHHHcC-CeEEEEEccCCCHhHHHHHH
Confidence 45566666555 99999999999999999976
No 95
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.53 E-value=1.6e-07 Score=54.42 Aligned_cols=24 Identities=50% Similarity=0.964 Sum_probs=21.6
Q ss_pred CCCcEEEEEECCCChHHhhhHHHH
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
.++++||+|+|+||++|+.|...+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHH
Confidence 359999999999999999998765
No 96
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.52 E-value=8.7e-08 Score=66.03 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=27.6
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++||.|||+||++|+...|.+.++.++|
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~ 128 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKY 128 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHH
Confidence 589999999999999999999999998754
No 97
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=1.8e-07 Score=60.55 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++++|.|||+||++|++..+.+.++++++
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~ 90 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKY 90 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999998754
No 98
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.50 E-value=1.3e-07 Score=56.19 Aligned_cols=30 Identities=33% Similarity=0.681 Sum_probs=27.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
+++++|.||++||++|+...+.+.++.+++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~ 48 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEY 48 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHh
Confidence 489999999999999999999999987653
No 99
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.46 E-value=1.2e-07 Score=63.12 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
++.+||+|||+||++|+...|.+.+++.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHH
Confidence 6999999999999999999999999975
No 100
>PLN02412 probable glutathione peroxidase
Probab=98.46 E-value=1.5e-07 Score=61.50 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++||.|||+||++|++..|.+.++.++|
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~ 58 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKY 58 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 489999999999999999999999987764
No 101
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.43 E-value=2.3e-07 Score=51.45 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=22.4
Q ss_pred EEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.||++||++|+++.+.+++++..
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL 27 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh
Confidence 5679999999999999999998754
No 102
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.39 E-value=5.9e-07 Score=56.75 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=25.5
Q ss_pred HHHHHHh---cCCCcEEEEEECCCChHHhhhHHHH
Q psy3441 62 ALNKLLK---KETRPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 62 ~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
+|++.+. ..+++++|+|++.||++|+.|...+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 5665543 3469999999999999999998754
No 103
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.37 E-value=4.7e-07 Score=54.72 Aligned_cols=26 Identities=35% Similarity=1.152 Sum_probs=21.6
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHH
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLA 95 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~ 95 (100)
.+++++|.||++||++|+.+.+.+..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 45899999999999999999999885
No 104
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.29 E-value=7e-07 Score=59.07 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCcE-EEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPV-LIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~v-lv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++ |+.|||+||++|++..|.++++.++|
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~ 70 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQY 70 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4654 55679999999999999999997754
No 105
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.20 E-value=1.6e-06 Score=56.39 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=27.6
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.++++||.||++||+.|....+.+.++.++|
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~ 54 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEY 54 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999998764
No 106
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.18 E-value=1.7e-06 Score=58.56 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=24.6
Q ss_pred CcEEEEEEC---CCChHHhhhHHHHHHhHhhC
Q psy3441 72 RPVLIMFYA---PWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 72 ~~vlv~F~a---~wC~~C~~~~p~~~~la~~l 100 (100)
...++.|++ +||++|+.+.|.++++++++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~ 51 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVS 51 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC
Confidence 445666888 99999999999999998764
No 107
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.17 E-value=1.8e-06 Score=54.06 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=27.2
Q ss_pred CCCcEEEEEECCCChH-HhhhHHHHHHhHhhC
Q psy3441 70 ETRPVLIMFYAPWCGF-CKQLKPEFLAGRDNL 100 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~l 100 (100)
.++.++|.||++||++ |.+..+.+.++.++|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~ 52 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQL 52 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHh
Confidence 3589999999999998 999999999987653
No 108
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.15 E-value=1.7e-06 Score=57.61 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++++||.|||+||+.|++ .|.++++.++|
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y 53 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAW 53 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHH
Confidence 589999999999999975 77898887654
No 109
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.13 E-value=2.3e-06 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.699 Sum_probs=21.2
Q ss_pred EEEEECCCChHHhhhHHHHHHhHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
++.||++||++|+++.+.+++++-
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~ 25 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA 25 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 567999999999999999988754
No 110
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.08 E-value=3.7e-06 Score=54.83 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=27.1
Q ss_pred CCcEEEEEECCC-ChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPW-CGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~w-C~~C~~~~p~~~~la~~l 100 (100)
++.++|.||++| |++|.+..|.|.++++++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHc
Confidence 588999999999 999999999999988763
No 111
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.08 E-value=4.5e-06 Score=51.00 Aligned_cols=30 Identities=30% Similarity=0.842 Sum_probs=26.9
Q ss_pred CCCcEEEEEECC-CChHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAP-WCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~ 99 (100)
.++++||.||++ ||++|+...+.+.++.++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~ 54 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKK 54 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhh
Confidence 348999999999 999999999999998764
No 112
>KOG2501|consensus
Probab=98.07 E-value=1.3e-06 Score=56.57 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=24.9
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
++.|.++|.|.||++|++|.|.+.++-+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe 60 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYE 60 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHH
Confidence 4999999999999999999999887643
No 113
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.06 E-value=4.6e-06 Score=52.52 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCcEEEEEECCC-ChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPW-CGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~w-C~~C~~~~p~~~~la~~l 100 (100)
++.++|.||++| |++|+...|.+.++.+++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~ 56 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKL 56 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc
Confidence 588999999999 699999999999987753
No 114
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.00 E-value=7.8e-06 Score=51.37 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=22.6
Q ss_pred CcEEEEE-ECCCChHHhhhHHHHHHhHhh
Q psy3441 72 RPVLIMF-YAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 72 ~~vlv~F-~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.++|.| +++||+.|+...|.+.++.++
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~ 52 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPE 52 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHH
Confidence 4455555 699999999999999998765
No 115
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.98 E-value=7.3e-06 Score=51.75 Aligned_cols=29 Identities=14% Similarity=0.429 Sum_probs=25.1
Q ss_pred CcEEEEEE-CCCChHHhhhHHHHHHhHhhC
Q psy3441 72 RPVLIMFY-APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 72 ~~vlv~F~-a~wC~~C~~~~p~~~~la~~l 100 (100)
++++|.|| ++||+.|....|.+.++.+++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~ 58 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELF 58 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHH
Confidence 77888887 999999999999999987653
No 116
>PTZ00062 glutaredoxin; Provisional
Probab=97.93 E-value=2.4e-05 Score=52.95 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=51.0
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEE----ECCCCh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMF----YAPWCG 84 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F----~a~wC~ 84 (100)
||+++|++|+....+.|. +...+..+++...+..+.. . ..+-..+++.+ ++|+|.- ++|||+
T Consensus 64 Ptfv~~~~g~~i~r~~G~-~~~~~~~~~~~~~~~~~~~----------~-~~~~v~~li~~--~~Vvvf~Kg~~~~p~C~ 129 (204)
T PTZ00062 64 GVFEFYQNSQLINSLEGC-NTSTLVSFIRGWAQKGSSE----------D-TVEKIERLIRN--HKILLFMKGSKTFPFCR 129 (204)
T ss_pred eEEEEEECCEEEeeeeCC-CHHHHHHHHHHHcCCCCHH----------H-HHHHHHHHHhc--CCEEEEEccCCCCCCCh
Confidence 789999999988888876 7888999998765532210 0 12334455544 4454422 347999
Q ss_pred HHhhhHHHHHHhH
Q psy3441 85 FCKQLKPEFLAGR 97 (100)
Q Consensus 85 ~C~~~~p~~~~la 97 (100)
.|+++...+++..
T Consensus 130 ~C~~~k~~L~~~~ 142 (204)
T PTZ00062 130 FSNAVVNMLNSSG 142 (204)
T ss_pred hHHHHHHHHHHcC
Confidence 9999999988753
No 117
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.92 E-value=8.5e-06 Score=53.22 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+||.|| ++||++|....+.+.+++++|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~ 59 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEF 59 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 488999999 899999999999999987653
No 118
>KOG0914|consensus
Probab=97.91 E-value=1.3e-05 Score=54.74 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=39.9
Q ss_pred CCeEEcCCHHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+....+++.+++.+.. ....|+|.|||.|.+.|++++|.|.+|+.+|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~ky 173 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKY 173 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHh
Confidence 344555577777777654 4579999999999999999999999998765
No 119
>KOG0913|consensus
Probab=97.91 E-value=1.5e-06 Score=59.48 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=35.8
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.+...+.+|+..++.. .||+.|+||||+.|+.++|.++..|.
T Consensus 25 ~~~~~~eenw~~~l~g---ewmi~~~ap~~psc~~~~~~~~~~a~ 66 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG---EWMIEFGAPWCPSCSDLIPHLENFAT 66 (248)
T ss_pred eeEEecccchhhhhch---HHHHHhcCCCCccccchHHHHhccCC
Confidence 4555588999998864 49999999999999999999998764
No 120
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.89 E-value=1e-05 Score=53.66 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~ 99 (100)
++.+||.|| ++||+.|....|.|.++.++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~ 60 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAE 60 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 588999999 99999999999999887664
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.86 E-value=1.7e-05 Score=49.51 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~ 99 (100)
+++++|.|| +.||+.|....+.+.++.++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~ 52 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEE 52 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 589999999 58999999999999988764
No 122
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.85 E-value=1.4e-05 Score=49.76 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCCcEEEEEE-CCCChHHhhhHHHHHHhHhhC
Q psy3441 70 ETRPVLIMFY-APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 70 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~l 100 (100)
.+++++|.|| +.||+.|....|.+.++.++|
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~ 52 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEF 52 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHH
Confidence 3589999999 789999999999999987653
No 123
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.75 E-value=3.2e-05 Score=42.70 Aligned_cols=22 Identities=27% Similarity=0.738 Sum_probs=19.3
Q ss_pred EEEEECCCChHHhhhHHHHHHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~l 96 (100)
+..|+++||++|+++.+.+++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~ 23 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK 23 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC
Confidence 4679999999999999998864
No 124
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.74 E-value=2e-05 Score=47.67 Aligned_cols=38 Identities=47% Similarity=0.951 Sum_probs=35.5
Q ss_pred CccC----CCCCeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 1 MKVE----VNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 1 ~~~~----~~~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
||++ |+ |.++..|++|.++.+|+...+..++++|++++
T Consensus 70 lKv~~~~kp~-~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 70 LKVDPSSKPK-PVELKHYKDGDFHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred HccCCCCCCC-cchhhcccCCCccccccchhhHHHHHHHhhCC
Confidence 5788 77 89999999999999999999999999999987
No 125
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.65 E-value=4.5e-05 Score=58.18 Aligned_cols=36 Identities=31% Similarity=0.713 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHH
Q psy3441 57 LPTPQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPE 92 (100)
Q Consensus 57 ~~~~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~ 92 (100)
+.+....++.+.+. +++|+|+|||+||-.||.+.+.
T Consensus 459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~ 495 (569)
T COG4232 459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKY 495 (569)
T ss_pred cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhh
Confidence 33334777777664 3599999999999999998875
No 126
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.64 E-value=4.9e-05 Score=39.62 Aligned_cols=22 Identities=50% Similarity=1.322 Sum_probs=20.1
Q ss_pred EEEEECCCChHHhhhHHHHHHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~l 96 (100)
|+.||++||++|+++.+.+.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH
Confidence 4789999999999999999976
No 127
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.60 E-value=0.00014 Score=42.97 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=24.4
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
..-+..|+++||++|..+.+.++++++.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~ 40 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVL 40 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4567778999999999999999999875
No 128
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.54 E-value=9.2e-05 Score=47.19 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCcEEEEEECC-CChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAP-WCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~-wC~~C~~~~p~~~~la~~ 99 (100)
++++||.||++ ||+.|....+.+.++.++
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~ 59 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDE 59 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 48999999986 688899999988887665
No 129
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.53 E-value=0.00023 Score=44.86 Aligned_cols=41 Identities=17% Similarity=0.411 Sum_probs=25.0
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.+.-+.+.......-++.|..+|||.|++..|.+.++|+.
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~ 69 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEA 69 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHh
Confidence 33333433333335567779999999999999999999874
No 130
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.49 E-value=0.00074 Score=43.70 Aligned_cols=81 Identities=26% Similarity=0.276 Sum_probs=62.1
Q ss_pred eeEEEccCC-cccccCCCc-cCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHH
Q psy3441 9 YVIKHYKDG-EFNKNYERK-ETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFC 86 (100)
Q Consensus 9 ~ti~~~~~g-~~~~~y~g~-~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C 86 (100)
+++.+|+.+ +....|.|. .+.+.|.+|++...-|. +..+ +.+++..+.......+++.|...-....
T Consensus 42 p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~----------v~~~-t~~n~~~~~~~~~~~~~~~~~~~~~~~~ 110 (184)
T PF13848_consen 42 PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL----------VPEL-TPENFEKLFSSPKPPVLILFDNKDNEST 110 (184)
T ss_dssp SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS----------CEEE-STTHHHHHHSTSSEEEEEEEETTTHHHH
T ss_pred CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc----------cccc-chhhHHHHhcCCCceEEEEEEcCCchhH
Confidence 566667774 455779997 89999999999985522 3444 7889999887652348888887778889
Q ss_pred hhhHHHHHHhHhhC
Q psy3441 87 KQLKPEFLAGRDNL 100 (100)
Q Consensus 87 ~~~~p~~~~la~~l 100 (100)
..+...++.+|+++
T Consensus 111 ~~~~~~l~~~a~~~ 124 (184)
T PF13848_consen 111 EAFKKELQDIAKKF 124 (184)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 131
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.47 E-value=0.00019 Score=45.02 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=25.4
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+.+|+.|+.++|++|+++.|.+.++..+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~ 33 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKE 33 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 47889999999999999999999987543
No 132
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.46 E-value=0.00024 Score=43.30 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=23.2
Q ss_pred HHHHHHh---cCCCcEEEEEECCCChHHhhhHH
Q psy3441 62 ALNKLLK---KETRPVLIMFYAPWCGFCKQLKP 91 (100)
Q Consensus 62 ~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p 91 (100)
+|++.+. ..+++++|+|+++||+.|+.|..
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~ 37 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNR 37 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHH
Confidence 3444443 23599999999999999999975
No 133
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.42 E-value=0.00015 Score=48.40 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+++.|| +.||+.|....+.|.++.++|
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f 61 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEEL 61 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 478999999 999999999999999887653
No 134
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.26 E-value=0.00097 Score=41.57 Aligned_cols=40 Identities=20% Similarity=0.546 Sum_probs=30.3
Q ss_pred CHHHHHHHHhc---CCCcEEEEEECC-------CChHHhhhHHHHHHhHh
Q psy3441 59 TPQALNKLLKK---ETRPVLIMFYAP-------WCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 59 ~~~~f~~~~~~---~~~~vlv~F~a~-------wC~~C~~~~p~~~~la~ 98 (100)
.-++|.+.+.. ++++++|.|+++ ||+.|.+..|.++++-.
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~ 53 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFK 53 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 34677777754 458899999954 99999999999988643
No 135
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.26 E-value=0.0003 Score=38.62 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|+++||++|+++...+++..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~ 24 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG 24 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC
Confidence 56799999999999999887653
No 136
>smart00594 UAS UAS domain.
Probab=97.25 E-value=0.0005 Score=42.60 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=23.9
Q ss_pred HHHHHHh---cCCCcEEEEEECCCChHHhhhHHH
Q psy3441 62 ALNKLLK---KETRPVLIMFYAPWCGFCKQLKPE 92 (100)
Q Consensus 62 ~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~ 92 (100)
+|++.+. ..+|.++|+|+++||+.|+.|...
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~ 48 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRD 48 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHH
Confidence 4555543 335899999999999999998753
No 137
>KOG3425|consensus
Probab=97.18 E-value=0.00096 Score=41.59 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=31.4
Q ss_pred CHHHHHHHHhc--CCCcEEEEEEC--------CCChHHhhhHHHHHHhHh
Q psy3441 59 TPQALNKLLKK--ETRPVLIMFYA--------PWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 59 ~~~~f~~~~~~--~~~~vlv~F~a--------~wC~~C~~~~p~~~~la~ 98 (100)
-.+.|++.+.+ +++-++|.|++ |||+.|.+..|.+.++-+
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk 60 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK 60 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH
Confidence 34678877764 34669999996 699999999999988754
No 138
>PRK15000 peroxidase; Provisional
Probab=97.12 E-value=0.00044 Score=46.49 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCcEEEEEECC-CChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAP-WCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~-wC~~C~~~~p~~~~la~~l 100 (100)
++.++|.||+. ||+.|....+.|.+++++|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f 64 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEF 64 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999995 9999999999999987653
No 139
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.09 E-value=0.00055 Score=46.63 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.-|+.||.+.|+.|+++.|++..++++|
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y 149 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY 149 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh
Confidence 477899999999999999999999999864
No 140
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.09 E-value=0.00043 Score=46.53 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCcEE-EEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVL-IMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vl-v~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.++ +.||++||+.|....+.|.++.++
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~ 56 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYED 56 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 35454 468999999999999999987665
No 141
>KOG0911|consensus
Probab=97.06 E-value=0.00033 Score=47.87 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=34.6
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.+...+.| +. ...+..++.|||+||.+|++|...++.+|+.
T Consensus 3 v~~i~~~~~f--~~-~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~ 45 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD-QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEY 45 (227)
T ss_pred ceeehhHHHH--HH-hccchhhhhhhhhhhhhhhhHHHHHHHHHHh
Confidence 3455566777 33 3568999999999999999999999999864
No 142
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.05 E-value=0.00084 Score=36.56 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|+++||++|+.+...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 45789999999999999998764
No 143
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.97 E-value=0.00058 Score=45.87 Aligned_cols=28 Identities=14% Similarity=0.155 Sum_probs=23.8
Q ss_pred cEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 73 PVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 73 ~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+|+.|+++||+.|....+.|.+++++|
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f 55 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEF 55 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHH
Confidence 4566899999999999999999987653
No 144
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.95 E-value=0.00061 Score=46.34 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCc-EEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRP-VLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~-vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++. ||+.|+++||+.|....+.|.++.++|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f 58 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDF 58 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHH
Confidence 354 567899999999999999999987653
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.85 E-value=0.0011 Score=46.55 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~l 100 (100)
++.+|+.|| +.||+.|....+.|.++.++|
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef 128 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEF 128 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 367777777 999999999999999887653
No 146
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.83 E-value=0.0026 Score=41.74 Aligned_cols=32 Identities=25% Similarity=0.690 Sum_probs=22.8
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHH
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p 91 (100)
+.+.|+..-.+. ++++|+++++||+-|+.|..
T Consensus 26 ~~ea~~~Ak~e~-KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 26 GEEALEKAKKEN-KPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp SHHHHHHHHHHT---EEEEEE-TT-HHHHHHHH
T ss_pred CHHHHHHHHhcC-CcEEEEEEecCCcchhhhcc
Confidence 456777776655 99999999999999999875
No 147
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.82 E-value=0.001 Score=45.22 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCcEE-EEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVL-IMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vl-v~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.++ +.|+++||+.|....+.|.+++++|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef 63 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEF 63 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHH
Confidence 35444 4788999999999999999987753
No 148
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.81 E-value=0.0015 Score=40.50 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=27.2
Q ss_pred CeeEEEccCCc--ccccCCCc-cCHHHHHHHhhCC
Q psy3441 8 PYVIKHYKDGE--FNKNYERK-ETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~~g~--~~~~y~g~-~~~~~l~~f~~~~ 39 (100)
-|||++|++|. .+..|.|. |+.++|++|+++.
T Consensus 81 yPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 81 YPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 47899999995 56789996 9999999999864
No 149
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.75 E-value=0.0017 Score=35.06 Aligned_cols=23 Identities=22% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..+||++|++....+++..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~ 23 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG 23 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC
Confidence 46799999999999999998754
No 150
>PRK13189 peroxiredoxin; Provisional
Probab=96.73 E-value=0.0012 Score=45.06 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.2
Q ss_pred CC-cEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TR-PVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~-~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++ .+|+.|+++||+.|....+.|.+++++|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef 65 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEF 65 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 35 4556778999999999999999887653
No 151
>PHA03050 glutaredoxin; Provisional
Probab=96.65 E-value=0.0024 Score=38.98 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..+|||+|++....++++.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcC
Confidence 55699999999999999998764
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.63 E-value=0.0022 Score=44.67 Aligned_cols=30 Identities=23% Similarity=0.120 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.-|+.||.+-|++|+++.|++..+++++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y 172 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY 172 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh
Confidence 467899999999999999999999999864
No 153
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.60 E-value=0.0031 Score=40.66 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+++.|+.|+...|++|+.+.+.+.++.++
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~ 43 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKK 43 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHh
Confidence 48899999999999999999999988664
No 154
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.50 E-value=0.003 Score=44.17 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
++.-||.||.+-|+.|+++.|++..++++|
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y 179 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY 179 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh
Confidence 467899999999999999999999998864
No 155
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.48 E-value=0.0027 Score=42.45 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCcEEEEEEC-CCChHHhhhHHHHHHhHhhC
Q psy3441 71 TRPVLIMFYA-PWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 71 ~~~vlv~F~a-~wC~~C~~~~p~~~~la~~l 100 (100)
++.++|.||+ .||++|....+.+.+++++|
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f 66 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRF 66 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHH
Confidence 4788999994 88999999989888887653
No 156
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.48 E-value=0.0034 Score=37.67 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.7
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..|||++|+++...+.++.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~ 32 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG 32 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 45699999999999999988764
No 157
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.38 E-value=0.0047 Score=35.25 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=21.1
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
+.-++.|+.+||++|++..-.+++..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~g 32 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKG 32 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcC
Confidence 34466799999999999999987653
No 158
>KOG0912|consensus
Probab=96.35 E-value=0.0088 Score=43.02 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=31.6
Q ss_pred cCCCCCeeEEEccCCcccc-cCCCccCHHHHHHHhhCCCC
Q psy3441 3 VEVNLPYVIKHYKDGEFNK-NYERKETVSAFVNFLKDPKG 41 (100)
Q Consensus 3 ~~~~~p~ti~~~~~g~~~~-~y~g~~~~~~l~~f~~~~~~ 41 (100)
|++. +|+++|+||.... +|.|.|+.+.+.+|+++..+
T Consensus 70 I~Ky--PTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 70 INKY--PTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred cccC--ceeeeeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 4555 8999999998654 79999999999999998754
No 159
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.04 E-value=0.016 Score=40.82 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=37.8
Q ss_pred CCeEEcCCHHHHHHHHhcC--CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKKE--TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~--~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..+.++.+++.|-+.+... +..|||.||-+-++.|..|...+..||++|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky 175 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY 175 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC
Confidence 4667787888999988654 357999999999999999999999999875
No 160
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.03 E-value=0.0075 Score=33.71 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|+.+||+.|++..-.+++..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~g 25 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKG 25 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCC
Confidence 45689999999999999888753
No 161
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.98 E-value=0.0077 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..+||++|.+....+++..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~ 24 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG 24 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC
Confidence 45689999999999999988753
No 162
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.77 E-value=0.014 Score=36.95 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+++|+.|+..-|++|.++.+.+.++-++
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~ 40 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKK 40 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhh
Confidence 47889999999999999999999877554
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.68 E-value=0.013 Score=38.99 Aligned_cols=25 Identities=28% Similarity=0.708 Sum_probs=22.7
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHH
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLA 95 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~ 95 (100)
++..++.|+.+.|++|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4789999999999999999999875
No 164
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.66 E-value=0.017 Score=33.31 Aligned_cols=22 Identities=14% Similarity=0.284 Sum_probs=19.0
Q ss_pred EEEEECCCChHHhhhHHHHHHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~l 96 (100)
++.|..+||++|++..-.+++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~ 24 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR 24 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC
Confidence 4568899999999999998774
No 165
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.58 E-value=0.017 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=19.5
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..+||+.|.+..-.+++..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~ 25 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENG 25 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 56789999999999999888653
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.31 E-value=0.0086 Score=34.87 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=27.9
Q ss_pred CeeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
-||+.+|++|+....|.|.++.+.|.+|+++
T Consensus 72 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 72 VPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp SSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 4789999999987889999999999999975
No 167
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.30 E-value=0.029 Score=31.77 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
|.+++++|+.|..+...+++++..+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc
Confidence 3447888999999999999988753
No 168
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.20 E-value=0.016 Score=36.05 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=25.7
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
+||++|++|+... |.|.++.+.|.+|+++
T Consensus 89 PTl~lfk~G~~v~-~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDEVIE-YDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCEEEE-eeCCCCHHHHHHHHHH
Confidence 6899999998655 9999999999999875
No 169
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=95.13 E-value=0.026 Score=33.26 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.4
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
||+.+|++|+....|.|.++.++|.+|+
T Consensus 74 Pt~~~~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 74 PSLYVFPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred CEEEEEcCCCCcccCCCCCCHHHHHhhC
Confidence 6788889998778899999999999874
No 170
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.13 E-value=0.039 Score=32.88 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=22.0
Q ss_pred HHHHHhcCCCcEEEEEE----CCCChHHhhhHHHHHHhH
Q psy3441 63 LNKLLKKETRPVLIMFY----APWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 63 f~~~~~~~~~~vlv~F~----a~wC~~C~~~~p~~~~la 97 (100)
..+++.+ ..|+|.-. +|||++|++....+.++.
T Consensus 5 v~~~i~~--~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~ 41 (97)
T TIGR00365 5 IKEQIKE--NPVVLYMKGTPQFPQCGFSARAVQILKACG 41 (97)
T ss_pred HHHHhcc--CCEEEEEccCCCCCCCchHHHHHHHHHHcC
Confidence 3444443 45555333 399999999999988753
No 171
>PRK10638 glutaredoxin 3; Provisional
Probab=94.89 E-value=0.035 Score=31.81 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|..+||++|++..-.+++..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g 26 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG 26 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC
Confidence 45678999999999999888753
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.88 E-value=0.025 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEECCCChHHhhhHHHHHHh
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~l 96 (100)
..|..++|++|++....+++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~ 22 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH 22 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC
Confidence 468899999999999998875
No 173
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.83 E-value=0.11 Score=32.91 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=36.1
Q ss_pred EcCCHHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 56 HLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 56 ~~~~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
++.++...++.+.+ ..+.|+|-|--.|-+.|++|-..+.++|++
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~ 48 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEK 48 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHH
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 45678888887765 469999999999999999999999999875
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.81 E-value=0.11 Score=39.51 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=50.9
Q ss_pred eeEEEccCCcc-cccCCCccCHHHHHHHhhCC---CCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCCh
Q psy3441 9 YVIKHYKDGEF-NKNYERKETVSAFVNFLKDP---KGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCG 84 (100)
Q Consensus 9 ~ti~~~~~g~~-~~~y~g~~~~~~l~~f~~~~---~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~ 84 (100)
+++.+.++|+. -+.|.|-..-.+|..|+..- +++.. .+ +++.-+.+-.-.+..-+-.|+++.|+
T Consensus 62 p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~-----------~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp 129 (517)
T PRK15317 62 PSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGHPP-----------KL-DQEVIEQIKALDGDFHFETYVSLSCH 129 (517)
T ss_pred CEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCCCC-----------CC-CHHHHHHHHhcCCCeEEEEEEcCCCC
Confidence 45655666643 46688877777777776544 33221 12 44544544332324447779999999
Q ss_pred HHhhhHHHHHHhHhh
Q psy3441 85 FCKQLKPEFLAGRDN 99 (100)
Q Consensus 85 ~C~~~~p~~~~la~~ 99 (100)
+|......+.++|..
T Consensus 130 ~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 130 NCPDVVQALNLMAVL 144 (517)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999988753
No 175
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.72 E-value=0.05 Score=37.40 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=24.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.+++.|.-+-||+|+++.+.+.++.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~ 133 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYN 133 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHh
Confidence 478899999999999999999998864
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.71 E-value=0.15 Score=39.14 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=49.8
Q ss_pred CeeEEEc-cCCc-ccccCCCccCHHHHHHHhhCC---CCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEE-EEECC
Q psy3441 8 PYVIKHY-KDGE-FNKNYERKETVSAFVNFLKDP---KGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLI-MFYAP 81 (100)
Q Consensus 8 p~ti~~~-~~g~-~~~~y~g~~~~~~l~~f~~~~---~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv-~F~a~ 81 (100)
.+++.+. .+|+ .-+.|.|-..-.+|..|+..- +++.+ .+ +.+..+.+-.-. +++-| .|.++
T Consensus 420 ~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~-----------~l-~~~~~~~i~~~~-~~~~i~v~~~~ 486 (555)
T TIGR03143 420 LPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQ-----------PL-GEELLEKIKKIT-KPVNIKIGVSL 486 (555)
T ss_pred CCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCC-----------CC-CHHHHHHHHhcC-CCeEEEEEECC
Confidence 3566666 4554 336677877777777776543 33221 12 445555544333 55544 46799
Q ss_pred CChHHhhhHHHHHHhHhh
Q psy3441 82 WCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 82 wC~~C~~~~p~~~~la~~ 99 (100)
+|++|.+..-.+.++|.+
T Consensus 487 ~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 487 SCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CCCCcHHHHHHHHHHHHh
Confidence 999999999999888764
No 177
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.55 E-value=0.054 Score=31.67 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCChHHhhhHHHHHHhH
Q psy3441 81 PWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 81 ~wC~~C~~~~p~~~~la 97 (100)
|||++|++....+++..
T Consensus 21 ~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 21 PRCGFSRKVVQILNQLG 37 (90)
T ss_pred CCCcHHHHHHHHHHHcC
Confidence 79999999999888754
No 178
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.51 E-value=0.04 Score=32.84 Aligned_cols=28 Identities=21% Similarity=0.596 Sum_probs=23.6
Q ss_pred eeEEEccCCc-ccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGE-FNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~-~~~~y~g~~~~~~l~~f~ 36 (100)
||+++|++|+ ....|.|.++.++|.+|+
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 5788889997 457799999999999985
No 179
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.48 E-value=0.039 Score=37.06 Aligned_cols=28 Identities=18% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCChHHhhhHHHH---HHhHh
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEF---LAGRD 98 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~---~~la~ 98 (100)
+++.+|.|+.--|+||.++.+.+ ..+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~ 67 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKK 67 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHH
Confidence 36779999999999999999865 45443
No 180
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.45 E-value=0.033 Score=34.21 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
+||++|++|+....|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 5888899998888899999999998873
No 181
>KOG4277|consensus
Probab=94.40 E-value=0.34 Score=35.18 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=27.5
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKG 41 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~ 41 (100)
+||++|++| ....|.|.|+.+.|+.|...-.+
T Consensus 102 PTIk~~kgd-~a~dYRG~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 102 PTIKFFKGD-HAIDYRGGREKDAIIEFAHRCAA 133 (468)
T ss_pred ceEEEecCC-eeeecCCCccHHHHHHHHHhccc
Confidence 689999888 44789999999999999988755
No 182
>PRK10824 glutaredoxin-4; Provisional
Probab=94.18 E-value=0.095 Score=32.42 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCcEEEEEEC-----CCChHHhhhHHHHHHhH
Q psy3441 62 ALNKLLKKETRPVLIMFYA-----PWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 62 ~f~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~la 97 (100)
-.++++.+ .+|+| |-. |||++|++....+..+.
T Consensus 7 ~v~~~I~~--~~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~ 44 (115)
T PRK10824 7 KIQRQIAE--NPILL-YMKGSPKLPSCGFSAQAVQALSACG 44 (115)
T ss_pred HHHHHHhc--CCEEE-EECCCCCCCCCchHHHHHHHHHHcC
Confidence 34445544 44555 444 69999999999988764
No 183
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.04 E-value=0.052 Score=34.90 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=21.2
Q ss_pred CcEEEEEE-CCCChHHhhh-HHHHHHhHhh
Q psy3441 72 RPVLIMFY-APWCGFCKQL-KPEFLAGRDN 99 (100)
Q Consensus 72 ~~vlv~F~-a~wC~~C~~~-~p~~~~la~~ 99 (100)
+.+++.|| +.||+.|... .+.|.+...+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~ 59 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADE 59 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHH
Confidence 45555555 9999999998 8888877654
No 184
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.066 Score=30.79 Aligned_cols=23 Identities=22% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
++.|.-++|++|++....+.+..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g 25 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKG 25 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcC
Confidence 45688999999999999888653
No 185
>KOG3414|consensus
Probab=93.96 E-value=0.15 Score=32.27 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHhc-CCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 57 LPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 57 ~~~~~~f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.++...++.+.+ ..+.|+|-|--.|-+-|.+|-..+.++|+.
T Consensus 8 L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~ 51 (142)
T KOG3414|consen 8 LHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAED 51 (142)
T ss_pred cccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHH
Confidence 4567778877765 458999999999999999999999999875
No 186
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.53 E-value=0.073 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.3
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
+|+.+|++| ....|.|.++.++|.+|+
T Consensus 74 PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 74 PTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred CEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 678888888 667899999999999885
No 187
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=93.48 E-value=0.08 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=23.8
Q ss_pred CeeEEEccCCc--ccccCCCccCHHHHHHHh
Q psy3441 8 PYVIKHYKDGE--FNKNYERKETVSAFVNFL 36 (100)
Q Consensus 8 p~ti~~~~~g~--~~~~y~g~~~~~~l~~f~ 36 (100)
-||+.+|++|+ ....|.|.++...|.+|+
T Consensus 74 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 74 FPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 36788888886 566799999999999985
No 188
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=93.47 E-value=0.35 Score=27.99 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.0
Q ss_pred EcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 56 ~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+.+.+..+.++... ..++|-|+.++|+ .....|.++|+.+
T Consensus 3 ~i~s~~~l~~~~~~~-~~~vvg~f~~~~~---~~~~~f~~~A~~~ 43 (97)
T cd02981 3 ELTSKEELEKFLDKD-DVVVVGFFKDEES---EEYKTFEKVAESL 43 (97)
T ss_pred ecCCHHHHHHHhccC-CeEEEEEECCCCc---HHHHHHHHHHHhc
Confidence 355666777766554 8899999999998 4677777777653
No 189
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.27 E-value=0.075 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
||+.+|++|+....|.|.++.+.|.+|+
T Consensus 75 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 5777789998777899999999998875
No 190
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.27 E-value=0.088 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.1
Q ss_pred eeEEEccCC-cccccCCCccC-HHHHHHHh
Q psy3441 9 YVIKHYKDG-EFNKNYERKET-VSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g-~~~~~y~g~~~-~~~l~~f~ 36 (100)
||+++|++| +....|.|.++ .++|.+|+
T Consensus 75 Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 75 PTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 678888887 67788999887 99998875
No 191
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.19 E-value=0.13 Score=29.70 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=26.0
Q ss_pred CeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
.|++.+|.+|+....|.|.++.+.|..|+.+.
T Consensus 70 ~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 70 FPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 46777787776577899999999999998764
No 192
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.13 E-value=0.15 Score=35.42 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
.+.+++.|.-+-|++|+++...+..+.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 477899999999999999998877653
No 193
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=93.10 E-value=0.12 Score=30.44 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.4
Q ss_pred eeEEEccCCc-----ccccCCCccCHHHHHHHhh
Q psy3441 9 YVIKHYKDGE-----FNKNYERKETVSAFVNFLK 37 (100)
Q Consensus 9 ~ti~~~~~g~-----~~~~y~g~~~~~~l~~f~~ 37 (100)
||+.+|++|+ ....|.|.++.++|.+|+.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 6777787775 4577999999999999973
No 194
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.75 E-value=0.15 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=23.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
||+.+|++|.. ..|.|.++.++|.+|+++
T Consensus 73 Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 73 PTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 56667888874 679999999999999863
No 195
>KOG1672|consensus
Probab=92.63 E-value=0.33 Score=32.90 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=39.5
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.-++.++.+|-+.+..+ .-|++.||-+--..|+-|-..++.||+.+
T Consensus 68 y~ev~~Ekdf~~~~~kS-~kVVcHFY~~~f~RCKimDkhLe~LAk~h 113 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKS-EKVVCHFYRPEFFRCKIMDKHLEILAKRH 113 (211)
T ss_pred EEEeccHHHHHHHhhcC-ceEEEEEEcCCCcceehHHHHHHHHHHhc
Confidence 45666788888888776 67999999999999999999999999864
No 196
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=92.47 E-value=0.15 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=25.2
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
||+.+|++|+....+.|.++.+.+.+|+++
T Consensus 81 Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 81 PAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 577778899877778899999999999875
No 197
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.25 E-value=0.15 Score=29.70 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=24.0
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
||+++|++|+....|.|..+.+.+.+|+
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 5788899998777899999999998875
No 198
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.17 E-value=0.21 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=23.7
Q ss_pred CeeEEEccCC-cccccCCCccCHHHHHHHh
Q psy3441 8 PYVIKHYKDG-EFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 8 p~ti~~~~~g-~~~~~y~g~~~~~~l~~f~ 36 (100)
.|++.+|.+| .....|.|.++.+.|.+|+
T Consensus 73 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 4677778888 4567799999999999986
No 199
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.14 E-value=0.62 Score=35.44 Aligned_cols=80 Identities=9% Similarity=0.079 Sum_probs=51.5
Q ss_pred CeeEEEccCCc-ccccCCCccCHHHHHHHhhCC---CCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCC
Q psy3441 8 PYVIKHYKDGE-FNKNYERKETVSAFVNFLKDP---KGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWC 83 (100)
Q Consensus 8 p~ti~~~~~g~-~~~~y~g~~~~~~l~~f~~~~---~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC 83 (100)
.+++.+.++|+ .-..|.|-..-.+|..|+..- +++. ..+ +++..+.+-.-.+..-+-.|+++-|
T Consensus 62 ~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~-----------~~l-~~~~~~~~~~~~~~~~i~~f~~~~C 129 (515)
T TIGR03140 62 KPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGHG-----------PKL-DEGIIDRIRRLNGPLHFETYVSLTC 129 (515)
T ss_pred CCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCCC-----------CCC-CHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 46666667765 336677877777777776553 3322 112 4455554443232444777999999
Q ss_pred hHHhhhHHHHHHhHhh
Q psy3441 84 GFCKQLKPEFLAGRDN 99 (100)
Q Consensus 84 ~~C~~~~p~~~~la~~ 99 (100)
++|....-.+.+++..
T Consensus 130 p~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 130 QNCPDVVQALNQMALL 145 (515)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999888888753
No 200
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=91.96 E-value=0.24 Score=30.50 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.9
Q ss_pred cCCCcEEEEEECC----CChHHhhh
Q psy3441 69 KETRPVLIMFYAP----WCGFCKQL 89 (100)
Q Consensus 69 ~~~~~vlv~F~a~----wC~~C~~~ 89 (100)
...|.++|++|++ ||..|+..
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~ 39 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNT 39 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHH
Confidence 3459999999999 99999765
No 201
>KOG1752|consensus
Probab=91.96 E-value=0.39 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.553 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHh
Q psy3441 62 ALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 62 ~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l 96 (100)
...+++.+ .+| |.|.-+||+.|+++...|.++
T Consensus 6 ~v~~~i~~--~~V-VifSKs~C~~c~~~k~ll~~~ 37 (104)
T KOG1752|consen 6 KVRKMISE--NPV-VIFSKSSCPYCHRAKELLSDL 37 (104)
T ss_pred HHHHHhhc--CCE-EEEECCcCchHHHHHHHHHhC
Confidence 45556654 344 459999999999999888774
No 202
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=91.78 E-value=0.87 Score=27.77 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=32.0
Q ss_pred EcCCHHHHHHHHhcC-CCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 56 HLPTPQALNKLLKKE-TRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 56 ~~~~~~~f~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.+.+.+++++++..+ .++++|.=.++.|+-++.....|++...
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~ 46 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWE 46 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhh
Confidence 356789999999763 4888888889999999999999988754
No 203
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=90.75 E-value=0.29 Score=28.23 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=23.0
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~ 36 (100)
||+++|++|+....|.|..+.+.|..++
T Consensus 68 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 68 PTVYLFAAGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CEEEEEeCCEEeeeecCCCCHHHHHHHh
Confidence 5666678888777799999999999886
No 204
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.59 E-value=1.7 Score=32.05 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=43.1
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCC-ChHHh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPW-CGFCK 87 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~w-C~~C~ 87 (100)
.+|..|++|.. ++|+|.++...++.|+.+... ..+-.+.+...+...-.-...+-||-|+-+- ..|-+
T Consensus 114 ~SiyVfkd~~~-IEydG~~saDtLVeFl~dl~e----------dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk 182 (383)
T PF01216_consen 114 GSIYVFKDGEV-IEYDGERSADTLVEFLLDLLE----------DPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYK 182 (383)
T ss_dssp TEEEEEETTEE-EEE-S--SHHHHHHHHHHHHS----------SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHH
T ss_pred CcEEEEECCcE-EEecCccCHHHHHHHHHHhcc----------cchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHH
Confidence 57888999965 679999999999999988743 1233444444554433322256777777664 55544
Q ss_pred hhHHHHHHhHhh
Q psy3441 88 QLKPEFLAGRDN 99 (100)
Q Consensus 88 ~~~p~~~~la~~ 99 (100)
. |+++|++
T Consensus 183 ~----FeeAAe~ 190 (383)
T PF01216_consen 183 E----FEEAAEH 190 (383)
T ss_dssp H----HHHHHHH
T ss_pred H----HHHHHHh
Confidence 4 4444443
No 205
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.53 E-value=0.27 Score=31.15 Aligned_cols=33 Identities=6% Similarity=0.161 Sum_probs=29.3
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKG 41 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~ 41 (100)
+|+++|++|+....+.|.++.+.+.+++.+...
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 689999999998889999999999999987654
No 206
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.39 E-value=0.35 Score=27.69 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=25.0
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
|++++|++|+....+.|..+.+.+.+|+++.
T Consensus 70 P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 70 PTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 6677778888767788989999999998754
No 207
>PRK10996 thioredoxin 2; Provisional
Probab=89.21 E-value=0.39 Score=30.23 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.9
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
||+++|++|+....+.|..+.+.|.+|+++.
T Consensus 108 Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 108 PTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 5677789998877788999999999998753
No 208
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.12 E-value=0.46 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
+.|+.+||+.|++..-.+++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g 23 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG 23 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC
Confidence 3578999999999988877643
No 209
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=88.72 E-value=0.53 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=22.4
Q ss_pred CeeEEEccCC-cccccCCCccCHHHHHHHh
Q psy3441 8 PYVIKHYKDG-EFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 8 p~ti~~~~~g-~~~~~y~g~~~~~~l~~f~ 36 (100)
-||+.+|.+| .....|.|.++.+.+.+|+
T Consensus 72 ~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 72 YPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 3667777776 6677899999999998874
No 210
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=88.72 E-value=0.27 Score=33.75 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=25.7
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPK 40 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~ 40 (100)
||+++|.+|+....+.|.++.+++.+|+....
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 67788889976666678899999999987653
No 211
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=87.70 E-value=0.76 Score=26.96 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=22.4
Q ss_pred eeEEEcc--CCcccccCCCccCHHHHHHHhh
Q psy3441 9 YVIKHYK--DGEFNKNYERKETVSAFVNFLK 37 (100)
Q Consensus 9 ~ti~~~~--~g~~~~~y~g~~~~~~l~~f~~ 37 (100)
||+.+|+ +|+....+.|.++.+.|.++++
T Consensus 74 Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 74 PTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 4556666 6777778899999999988763
No 212
>PRK09381 trxA thioredoxin; Provisional
Probab=87.59 E-value=0.6 Score=27.60 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=25.4
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
||+.+|++|+....+.|..+.+.+..++...
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence 5777789998777788999999999988754
No 213
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=87.40 E-value=0.77 Score=27.01 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=23.0
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
||+++|++| ....|.|.++.+.+.+|+++.
T Consensus 74 Pt~~l~~~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 74 PTIKLLKGD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cEEEEEcCC-CceeecCCCCHHHHHHHHHhh
Confidence 566667666 445688999999999999864
No 214
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=87.16 E-value=0.88 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=22.0
Q ss_pred eeEEEccCCc-ccccCCCc-cCHHHHHHHh
Q psy3441 9 YVIKHYKDGE-FNKNYERK-ETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g~-~~~~y~g~-~~~~~l~~f~ 36 (100)
||+++|.+|. ....|.|. ++.++|.+|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 6777777764 56789995 9999999885
No 215
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=86.80 E-value=1.1 Score=25.75 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=23.8
Q ss_pred CeeEEEccCC-cccccCCCccCHHHHHHHhhC
Q psy3441 8 PYVIKHYKDG-EFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 8 p~ti~~~~~g-~~~~~y~g~~~~~~l~~f~~~ 38 (100)
++++.+|++. .....|.|.++.+.|.+|++.
T Consensus 65 ~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 65 PGSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 3567777664 455679999999999999875
No 216
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=86.19 E-value=1.5 Score=25.26 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=21.8
Q ss_pred eeEEEccCC-cccccCCCccCHHHHHHHh
Q psy3441 9 YVIKHYKDG-EFNKNYERKETVSAFVNFL 36 (100)
Q Consensus 9 ~ti~~~~~g-~~~~~y~g~~~~~~l~~f~ 36 (100)
|++.+|.+| .....|.|.++.+.|.+|+
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 566667666 4567799999999999885
No 217
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=86.18 E-value=0.86 Score=34.65 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=24.7
Q ss_pred eeEEEccCCc-ccccCC-CccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGE-FNKNYE-RKETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~-~~~~y~-g~~~~~~l~~f~~~ 38 (100)
+||++|++|+ .+..|. |.|+.++|..|++.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 7888898885 567797 58999999999864
No 218
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=86.14 E-value=0.7 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=23.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhh
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLK 37 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~ 37 (100)
+|+.+|++|+....+.|..+.+.+.++++
T Consensus 69 Pt~~i~~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 69 PTVQFFKDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred cEEEEEECCeEEEEEeCCccHHHHHHhhC
Confidence 56777789988778889999999988864
No 219
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=85.75 E-value=1.3 Score=27.87 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=24.7
Q ss_pred ccCCCCCeeEEEccCC-cccccC--CCccCHHHHHHHhhCCCC
Q psy3441 2 KVEVNLPYVIKHYKDG-EFNKNY--ERKETVSAFVNFLKDPKG 41 (100)
Q Consensus 2 ~~~~~~p~ti~~~~~g-~~~~~y--~g~~~~~~l~~f~~~~~~ 41 (100)
+|+...=+++.+|..| ..+..| .|+.+.++|.+|++..++
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 3444422444455544 466777 899999999999998854
No 220
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=85.50 E-value=0.82 Score=25.17 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.6
Q ss_pred CeeEEEccCCcccccCCCccCHHHHHHHhh
Q psy3441 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLK 37 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~ 37 (100)
-|++.+|++|+....+.|..+.+.|.++++
T Consensus 64 ~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 64 IPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred ccEEEEEECCEEEEEEecCCCHHHHHHHhC
Confidence 467778888987777888888888888763
No 221
>PHA02278 thioredoxin-like protein
Probab=85.48 E-value=0.73 Score=27.68 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHH
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNF 35 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f 35 (100)
||+++|++|+......|..+.+.+.++
T Consensus 74 PT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 74 PVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred cEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 699999999887788898888887764
No 222
>PLN02309 5'-adenylylsulfate reductase
Probab=84.41 E-value=1.1 Score=34.00 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=24.9
Q ss_pred eeEEEccCCc-ccccCCC-ccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGE-FNKNYER-KETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~-~~~~y~g-~~~~~~l~~f~~~ 38 (100)
+||++|++|. .+..|.| .|+.++|..|++.
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 7888898886 5677975 7999999999975
No 223
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=83.90 E-value=1 Score=24.33 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=17.1
Q ss_pred EEEECCCChHHhhhHHHHHHh
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~l 96 (100)
..|+.++|+.|+++.-.+...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 357789999999998887764
No 224
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=83.88 E-value=4.2 Score=28.35 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred cCCeEEcCCHHHHHHHHh--cCCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 51 AQAVVHLPTPQALNKLLK--KETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 51 ~~~~v~~~~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.+.++.+ ++++...+++ ..++|+++.|-+--||+-+.-...|++++++|
T Consensus 81 ns~vv~l-~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f 131 (237)
T PF00837_consen 81 NSPVVTL-DGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDF 131 (237)
T ss_pred CCceEee-CCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHh
Confidence 3456666 5666444442 34699999999988999999999999998875
No 225
>KOG0910|consensus
Probab=83.67 E-value=1.1 Score=29.13 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=27.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPK 40 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~ 40 (100)
+|++.|+||+....+-|..+.+.+.+++.+..
T Consensus 117 PtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 117 PTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred eEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 78889999988778889999999999887653
No 226
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=83.48 E-value=1.2 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=24.3
Q ss_pred CeeEEEccCCcccccCCC-ccCHHHHHHHhh
Q psy3441 8 PYVIKHYKDGEFNKNYER-KETVSAFVNFLK 37 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g-~~~~~~l~~f~~ 37 (100)
.||+++|++|+......| ..+.+.|.+|+.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 688999999987777767 567999998863
No 227
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=82.27 E-value=1.2 Score=23.07 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=16.7
Q ss_pred EEECCCChHHhhhHHHHHHh
Q psy3441 77 MFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 77 ~F~a~wC~~C~~~~p~~~~l 96 (100)
.|+.++|+.|++..-.++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc
Confidence 47889999999998887765
No 228
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.10 E-value=2 Score=23.64 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=17.8
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
..|+.+.|+.|++..-.+.+..
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~g 24 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHG 24 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCC
Confidence 4578899999999998877653
No 229
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=1.9 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCcEEEEEE-CCCChHHhhhHHHHHHhHh
Q psy3441 71 TRPVLIMFY-APWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 71 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~ 98 (100)
++.|+++|| ..|++-|...+-.|+..-.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ 58 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLE 58 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHH
Confidence 578999999 7888888887777776544
No 230
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=80.39 E-value=1.9 Score=23.36 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=17.6
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
..|+.++|+.|++..-.+++.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g 23 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG 23 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC
Confidence 4578899999999988877653
No 231
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=79.67 E-value=1.5 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.312 Sum_probs=16.9
Q ss_pred EEECCCChHHhhhHHHHHHhH
Q psy3441 77 MFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 77 ~F~a~wC~~C~~~~p~~~~la 97 (100)
.++.++|++|++..-.+....
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~g 23 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKN 23 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcC
Confidence 477899999999988777643
No 232
>KOG2603|consensus
Probab=78.53 E-value=3.5 Score=29.97 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=37.8
Q ss_pred cCCeEEcCCHHHHHHHHhcCC--CcEEEEEECCC----ChHHhhhHHHHHHhHhh
Q psy3441 51 AQAVVHLPTPQALNKLLKKET--RPVLIMFYAPW----CGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 51 ~~~~v~~~~~~~f~~~~~~~~--~~vlv~F~a~w----C~~C~~~~p~~~~la~~ 99 (100)
+++++.. +.++|..++.... --++|+|.|.. |.-|+++..+|.-+|..
T Consensus 39 ~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S 92 (331)
T KOG2603|consen 39 ESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANS 92 (331)
T ss_pred CCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHH
Confidence 3467777 6799999998643 46788888754 99999999999988764
No 233
>KOG2640|consensus
Probab=77.93 E-value=0.5 Score=34.07 Aligned_cols=27 Identities=37% Similarity=0.899 Sum_probs=21.9
Q ss_pred CCcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 71 TRPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 71 ~~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
...|-+.||++||+..+...|.|+-..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~ 102 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRS 102 (319)
T ss_pred CCcccccchhcccCcccccCcccchhh
Confidence 367888999999999998888876543
No 234
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=76.75 E-value=3.7 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEECCCChHHhhhHHHHHHhHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
|+.|..+-|+-|..+...+++++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~ 25 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA 25 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh
Confidence 677999999999999999998753
No 235
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=76.37 E-value=3.9 Score=25.76 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=23.6
Q ss_pred eeEEEc-cCCcccccCCCccCHHHHHHHhhCCC
Q psy3441 9 YVIKHY-KDGEFNKNYERKETVSAFVNFLKDPK 40 (100)
Q Consensus 9 ~ti~~~-~~g~~~~~y~g~~~~~~l~~f~~~~~ 40 (100)
+|+++| ++|+....+.|..+.+.|.+.++...
T Consensus 78 Pt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 78 PHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred CEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 445555 68887777889888888888887654
No 236
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.24 E-value=2.5 Score=23.50 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.4
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
..|+.++|+.|++..-.+++..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g 24 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE 24 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC
Confidence 4567889999999988777653
No 237
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=75.87 E-value=2.7 Score=22.81 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.3
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
..|+.++|+.|++..-.+++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g 23 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG 23 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC
Confidence 3578999999998887776653
No 238
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=75.37 E-value=4.2 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.100 Sum_probs=21.7
Q ss_pred CeeEEEccC--CcccccCCCccCHHHHHHHhhCC
Q psy3441 8 PYVIKHYKD--GEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~~--g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
.+++.++++ |.......|..+.++|.+|+++.
T Consensus 69 ~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 69 LPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 467777877 54433334456999999998764
No 239
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.71 E-value=4.1 Score=27.65 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.2
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHh
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~l 96 (100)
+..++.|.-.-|++|+...|.+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 7889999999999999998888773
No 240
>KOG3170|consensus
Probab=74.64 E-value=14 Score=25.45 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCeEEcCCHHHHHHHHhc--CCCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 52 QAVVHLPTPQALNKLLKK--ETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~--~~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
..|..+ ++.+|...|.. .+-.|+|..|..--+.|.-+...+..||.+|
T Consensus 91 G~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf 140 (240)
T KOG3170|consen 91 GEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF 140 (240)
T ss_pred cceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC
Confidence 345566 67777766533 3467888899999999999999999999765
No 241
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=74.15 E-value=2.8 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=20.4
Q ss_pred eeEEEccCCcccccCCCccCHHHHH
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFV 33 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~ 33 (100)
||+++|++|+....+.|..+...+.
T Consensus 85 PTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCEEEEEEeCccCHHHHh
Confidence 6899999999877788887777654
No 242
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=3.2 Score=23.99 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=19.4
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
+.|+|--||.|..+...++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 5699999999999999988864
No 243
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.74 E-value=7.7 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=27.3
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCCChHHhhhHH
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p 91 (100)
..+.|+..-... +|+++..-.+||.=|+-|..
T Consensus 32 ~~eAf~~A~~ed-kPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 32 GEEAFAKAKEED-KPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred CHHHHHHHHHhC-CCEEEEeccccccchHHHhh
Confidence 467788877665 99999999999999998864
No 244
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=68.22 E-value=3.6 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.1
Q ss_pred cCCCcEEEEEECCCChHHhhhH
Q psy3441 69 KETRPVLIMFYAPWCGFCKQLK 90 (100)
Q Consensus 69 ~~~~~vlv~F~a~wC~~C~~~~ 90 (100)
..+|+.++...+-||+.|...+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CCCeeEEEEEecccCccchhhH
Confidence 4569999999999999998765
No 245
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=67.44 E-value=3.6 Score=26.20 Aligned_cols=15 Identities=40% Similarity=0.828 Sum_probs=12.0
Q ss_pred CCCChHHhhhHHHHH
Q psy3441 80 APWCGFCKQLKPEFL 94 (100)
Q Consensus 80 a~wC~~C~~~~p~~~ 94 (100)
.+=||+|+|+.-.|.
T Consensus 85 ~sPCG~CRQ~i~Ef~ 99 (134)
T COG0295 85 VSPCGACRQVLAEFC 99 (134)
T ss_pred cCCcHHHHHHHHHhc
Confidence 345999999988774
No 246
>KOG0908|consensus
Probab=66.51 E-value=7.1 Score=27.70 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=25.4
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPK 40 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~ 40 (100)
+|+++|+||..+..+.|+ +...|..-+.+..
T Consensus 76 PTFiff~ng~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 76 PTFIFFRNGVKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred ceEEEEecCeEeeeecCC-CHHHHHHHHHHHh
Confidence 899999999988888887 7787877776654
No 247
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=63.23 E-value=9.7 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.642 Sum_probs=19.6
Q ss_pred cEEEEEECCCChHHhhhHHHHHHh
Q psy3441 73 PVLIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 73 ~vlv~F~a~wC~~C~~~~p~~~~l 96 (100)
.-++.|++|.||-|......++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~ 49 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN 49 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC
Confidence 346678999999999999888753
No 248
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.24 E-value=19 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCcEEEEEECCCChH
Q psy3441 60 PQALNKLLKKETRPVLIMFYAPWCGF 85 (100)
Q Consensus 60 ~~~f~~~~~~~~~~vlv~F~a~wC~~ 85 (100)
-++....+....++||+.|-+-|--+
T Consensus 122 y~~lr~~I~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 122 YSWLRNEIQERDKPWLILFGTGWGLP 147 (190)
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCCC
Confidence 34455556666799999999999543
No 249
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=61.09 E-value=8.2 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.1
Q ss_pred EEECCCChHHhhhHHHHHHh
Q psy3441 77 MFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 77 ~F~a~wC~~C~~~~p~~~~l 96 (100)
.|+.+.|+.|++..-.++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL 22 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc
Confidence 47789999999988777654
No 250
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=61.07 E-value=10 Score=24.45 Aligned_cols=33 Identities=6% Similarity=-0.092 Sum_probs=25.7
Q ss_pred CCeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 7 LPYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 7 ~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
.|.++++.++|+....+.|..+.+.+.+.++..
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 477888889998666677888888888777643
No 251
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=59.73 E-value=8.6 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCCeeEEEccCCcccccCCCccCHHHHHHHhhCCC
Q psy3441 6 NLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPK 40 (100)
Q Consensus 6 ~~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~ 40 (100)
..|.++++.++|+....+.|..+.+.|..++++..
T Consensus 139 giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 139 VYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 46888898999988777889999999999999654
No 252
>KOG3171|consensus
Probab=59.70 E-value=29 Score=24.23 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=42.7
Q ss_pred ccCCeEEcCCHHHHHHHHhcC--CCcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 50 SAQAVVHLPTPQALNKLLKKE--TRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 50 ~~~~~v~~~~~~~f~~~~~~~--~~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.-..|+++.++..|-+.+... .-.++|..|-+--.-|..|...+.=||.+|
T Consensus 136 ~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey 188 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY 188 (273)
T ss_pred ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC
Confidence 345789999999999999754 357888999999999999999998888764
No 253
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=59.29 E-value=7.8 Score=26.01 Aligned_cols=24 Identities=38% Similarity=0.826 Sum_probs=14.1
Q ss_pred CHHHHHHHHhcCCCcEEEEEECCC
Q psy3441 59 TPQALNKLLKKETRPVLIMFYAPW 82 (100)
Q Consensus 59 ~~~~f~~~~~~~~~~vlv~F~a~w 82 (100)
+-....+.+.+.++++|+.|-+-|
T Consensus 120 s~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 120 SYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp -HHHHHHHHHH--S-EEEEE--TT
T ss_pred CHHHHHHHHhccCCeEEEEecCCC
Confidence 456666777666699999999999
No 254
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=58.85 E-value=14 Score=24.15 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=26.2
Q ss_pred CCCeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 6 NLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 6 ~~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
+.|.|+++.++|+....+.|..+.+.+.+.++..
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 3577899899998767788888888877776543
No 255
>PLN02182 cytidine deaminase
Probab=58.85 E-value=5.1 Score=29.38 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.4
Q ss_pred CCCChHHhhhHHHHH
Q psy3441 80 APWCGFCKQLKPEFL 94 (100)
Q Consensus 80 a~wC~~C~~~~p~~~ 94 (100)
.+=||+|+++.-.|.
T Consensus 129 ~sPCG~CRQfm~Ef~ 143 (339)
T PLN02182 129 GTPCGHCLQFLMEMS 143 (339)
T ss_pred cCCCchhHHHHHHhC
Confidence 466999999988874
No 256
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=58.54 E-value=16 Score=22.77 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.7
Q ss_pred CCCccCHHHHHHHhhCCCCCC
Q psy3441 23 YERKETVSAFVNFLKDPKGDI 43 (100)
Q Consensus 23 y~g~~~~~~l~~f~~~~~~~~ 43 (100)
+.|.++.+++.+|+++.....
T Consensus 98 ~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 98 LKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccCccCHHHHHHHHHHHHcCC
Confidence 779999999999999886533
No 257
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=58.18 E-value=16 Score=23.14 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=21.6
Q ss_pred cCC-CCCeeEEEc-cCCcccccCCCccCHHHHHHHhhC
Q psy3441 3 VEV-NLPYVIKHY-KDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 3 ~~~-~~p~ti~~~-~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
+++ ..|..+++- ..+.+...+.|..+.+++.+|+++
T Consensus 147 i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 443 335555554 234443334889999999999864
No 258
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=58.16 E-value=13 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 66 LLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 66 ~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+....++++||-+-..+|..|..-+..++.|-.+
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~k 54 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREK 54 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHH
Confidence 4445578999999999999999988888887654
No 259
>PRK12411 cytidine deaminase; Provisional
Probab=57.11 E-value=6.8 Score=24.70 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.5
Q ss_pred CCChHHhhhHHHHH
Q psy3441 81 PWCGFCKQLKPEFL 94 (100)
Q Consensus 81 ~wC~~C~~~~p~~~ 94 (100)
+=||.|+++.-.|.
T Consensus 84 sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 84 PPCGACRQVMVELC 97 (132)
T ss_pred CCchhHHHHHHHhC
Confidence 56999999988773
No 260
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=55.67 E-value=17 Score=20.71 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=17.6
Q ss_pred EEEEECCCChHHhhhHHHHHHhH
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~la 97 (100)
+..|+.+.|+.|++..-.++...
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g 41 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN 41 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC
Confidence 45577888999999887776643
No 261
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.21 E-value=18 Score=24.02 Aligned_cols=24 Identities=25% Similarity=0.755 Sum_probs=20.7
Q ss_pred CCCcEEEEEECCCChHHhhhHHHH
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
.++-.+++|-++-|..|.+|....
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDL 64 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhh
Confidence 358899999999999999998654
No 262
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=54.65 E-value=16 Score=23.05 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCeeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 7 LPYVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 7 ~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
.|.++++-++|+....+.|..+.+.+.+++..
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 37778877888776678899999999888764
No 263
>KOG0833|consensus
Probab=54.37 E-value=9 Score=25.43 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=14.6
Q ss_pred ECCCChHHhhhHHHHHHh
Q psy3441 79 YAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 79 ~a~wC~~C~~~~p~~~~l 96 (100)
+.+=||+|+++.-.|...
T Consensus 101 f~tPCG~CRQfl~Ef~~~ 118 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGNA 118 (173)
T ss_pred cCCCcHHHHHHHHHHhhc
Confidence 456699999999988763
No 264
>PRK05578 cytidine deaminase; Validated
Probab=53.64 E-value=8.6 Score=24.21 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.2
Q ss_pred CCCChHHhhhHHHHH
Q psy3441 80 APWCGFCKQLKPEFL 94 (100)
Q Consensus 80 a~wC~~C~~~~p~~~ 94 (100)
.+=||.|+++.-.|.
T Consensus 83 ~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 83 LSPCGRCRQVLAEFG 97 (131)
T ss_pred cCccHHHHHHHHHhC
Confidence 467999999988774
No 265
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=52.36 E-value=24 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCeeEEEccC-CcccccCCCccCHHHHHHHhhCC
Q psy3441 7 LPYVIKHYKD-GEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 7 ~p~ti~~~~~-g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
.|.++.+-++ |+....+.|..+.+.+.+++...
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 3444444445 46666678888888888777654
No 266
>PRK06848 hypothetical protein; Validated
Probab=51.78 E-value=9.3 Score=24.33 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.4
Q ss_pred CCCChHHhhhHHHH
Q psy3441 80 APWCGFCKQLKPEF 93 (100)
Q Consensus 80 a~wC~~C~~~~p~~ 93 (100)
.+=||.|+++.-.|
T Consensus 94 ~~PCG~CRQvl~E~ 107 (139)
T PRK06848 94 VSPCGACRELISDY 107 (139)
T ss_pred cCCChhhHHHHHHh
Confidence 34599999998776
No 267
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=51.30 E-value=23 Score=23.04 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCCcEEEEEECCCC-hHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAPWC-GFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~wC-~~C~~~~p~~~~la~~ 99 (100)
.++.+||.|.=+-| ..|-.+...+.++.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~ 81 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQ 81 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHH
Confidence 35999999998888 6788888777777553
No 268
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=51.01 E-value=49 Score=22.22 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=29.0
Q ss_pred CHHHHHHHHhcCC-CcEEEEEECCCChHHhhhHHHHHHh
Q psy3441 59 TPQALNKLLKKET-RPVLIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 59 ~~~~f~~~~~~~~-~~vlv~F~a~wC~~C~~~~p~~~~l 96 (100)
.+.++-+++++.+ +|+.|+||-|.=..-.+.+..++.+
T Consensus 130 kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tl 168 (191)
T PF09499_consen 130 KEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTL 168 (191)
T ss_pred hHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHH
Confidence 4556777887765 8999999999887777777666655
No 269
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=49.94 E-value=51 Score=19.21 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=24.5
Q ss_pred EEcCCHHHHHHHHh-cCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 55 VHLPTPQALNKLLK-KETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 55 v~~~~~~~f~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
..+.+.++.+.++. .. ..++|-|+..--. .....|.++|..
T Consensus 3 ~~i~~~~~~e~~~~~~~-~~~Vvg~f~~~~~---~~~~~F~~vA~~ 44 (102)
T cd03066 3 EIINSERELQAFENIED-DIKLIGYFKSEDS---EHYKAFEEAAEE 44 (102)
T ss_pred eEcCCHHHHHHHhcccC-CeEEEEEECCCCC---HHHHHHHHHHHh
Confidence 44556777888886 54 5666666655433 344456666543
No 270
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=48.91 E-value=23 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.++++||.=.|+-||.-. --..+++|.++
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~k 48 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEK 48 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHH
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHH
Confidence 358999999999999887 44466666554
No 271
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=48.34 E-value=22 Score=24.67 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=26.1
Q ss_pred CeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
|.|+++-++|+....|.|..+.+.+.+.++..
T Consensus 202 PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 202 FEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred ceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 67888889998877888988888888877653
No 272
>PLN02412 probable glutathione peroxidase
Probab=48.17 E-value=28 Score=22.39 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=25.6
Q ss_pred CeeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
|.|+++-++|+....+.|..+.+.+.+.++..
T Consensus 132 p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 132 FTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 77888889998777788888888888777643
No 273
>PLN02402 cytidine deaminase
Probab=47.75 E-value=30 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=17.2
Q ss_pred CcEEEEEECCCChHHhhhHHHHH
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFL 94 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~ 94 (100)
+..-|-...+=||+|+|+.-.|.
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHhc
Confidence 44445556788999999988773
No 274
>KOG4163|consensus
Probab=44.60 E-value=19 Score=27.59 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=19.2
Q ss_pred CCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChH
Q psy3441 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGF 85 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~ 85 (100)
+.++.+.+-+.|-..+.+. + ++ -||||+.
T Consensus 465 s~~~~v~~~~eF~~aL~~k-~-ii---laPwcg~ 493 (551)
T KOG4163|consen 465 SHIVKVNTWEEFVKALDQK-K-II---LAPWCGE 493 (551)
T ss_pred hheeeeeeHHHHHHHhccC-C-EE---EccccCc
Confidence 4566776777777777653 4 33 2999975
No 275
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=42.58 E-value=70 Score=18.73 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 57 ~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
+.+.++.+.++... +.++|-|+..--. .+...|.++|..
T Consensus 5 i~s~~~l~~f~~~~-~~~Vvg~f~~~~~---~~~~~F~~vA~~ 43 (104)
T cd03069 5 LRTEAEFEKFLSDD-DASVVGFFEDEDS---KLLSEFLKAADT 43 (104)
T ss_pred cCCHHHHHHHhccC-CcEEEEEEcCCCc---hHHHHHHHHHHh
Confidence 44566677766544 5666666655333 344555555543
No 276
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=42.48 E-value=35 Score=21.31 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=23.2
Q ss_pred eEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 10 VIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 10 ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
|+++-++|+....|.|..+.+.+.+.+++
T Consensus 123 tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 123 KYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred EEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 78888889877778888888888777654
No 277
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=42.27 E-value=20 Score=19.22 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=13.8
Q ss_pred CCCChHHhhhHHHHHHh
Q psy3441 80 APWCGFCKQLKPEFLAG 96 (100)
Q Consensus 80 a~wC~~C~~~~p~~~~l 96 (100)
.+||+.|++..-.++..
T Consensus 13 ~s~sp~~~~v~~~L~~~ 29 (72)
T cd03054 13 PSLSPECLKVETYLRMA 29 (72)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 57999999998887654
No 278
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=41.44 E-value=77 Score=18.85 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=23.4
Q ss_pred EEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 55 v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
..+.+.++.+.++.+..+.++|-|+..--+ .+...|.++|..
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~ 44 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANS 44 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHh
Confidence 345566777777765425555666655333 344555566543
No 279
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=40.83 E-value=22 Score=21.50 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.4
Q ss_pred EECCCChHHhhhHHHHHHhHhh
Q psy3441 78 FYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 78 F~a~wC~~C~~~~p~~~~la~~ 99 (100)
||-+|..|-++....+++++.+
T Consensus 32 ~ylswakpykrahesieklsnk 53 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNK 53 (126)
T ss_pred eeeeecChhhHHHhHHHHhccc
Confidence 7899999999999999998753
No 280
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=40.81 E-value=27 Score=23.35 Aligned_cols=29 Identities=31% Similarity=0.656 Sum_probs=19.4
Q ss_pred eEEcCCHHHHHHHHhcCCCcEEEEEECCCCh--HHh
Q psy3441 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCG--FCK 87 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~--~C~ 87 (100)
++.+.+-+.|.+.+.+. ..+ .+|||| .|-
T Consensus 128 ~~~~~~~~e~~~~~~~~-~~v----~~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEALNEK-GIV----LAPWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHHhcC-CEE----EEEecCCHHHH
Confidence 56666778888888653 332 479996 664
No 281
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=39.72 E-value=16 Score=24.71 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=18.2
Q ss_pred eEEcCCHHHHHHHHhcC---CCcEEEEEECCCChH
Q psy3441 54 VVHLPTPQALNKLLKKE---TRPVLIMFYAPWCGF 85 (100)
Q Consensus 54 ~v~~~~~~~f~~~~~~~---~~~vlv~F~a~wC~~ 85 (100)
.+. -+.+.|.+-|.+. +..-|++=|||.|.|
T Consensus 22 ~I~-~~ke~F~~kvne~~~~~~~~l~dGYAPFCKH 55 (197)
T PF11539_consen 22 RIP-CDKEEFVEKVNEIYKEGPAKLVDGYAPFCKH 55 (197)
T ss_dssp ----S-HHHHHHHHHHHHHCCT--EEE-SSTTEEE
T ss_pred eec-cCHHHHHHHHHHHHhcCCCccccccCcceee
Confidence 344 4778888777542 455699999999976
No 282
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=39.63 E-value=80 Score=18.90 Aligned_cols=39 Identities=23% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHhh
Q psy3441 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 58 ~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~ 99 (100)
.+.++++.+.... .+..+.|+ --..-..+...++++|++
T Consensus 4 ~t~e~~~~~~~~~-~~~~~l~f--~~~~~~~~~~~~~~vAk~ 42 (111)
T cd03072 4 ITFENAEELTEEG-LPFLILFH--DKDDLESLKEFKQAVARQ 42 (111)
T ss_pred cccccHHHHhcCC-CCeEEEEe--cchHHHHHHHHHHHHHHH
Confidence 3667777666554 55555566 223346788888888876
No 283
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=39.55 E-value=19 Score=20.41 Aligned_cols=12 Identities=8% Similarity=0.373 Sum_probs=10.5
Q ss_pred eeEEEccCCccc
Q psy3441 9 YVIKHYKDGEFN 20 (100)
Q Consensus 9 ~ti~~~~~g~~~ 20 (100)
+++.||++|..+
T Consensus 13 Pti~W~kng~~l 24 (79)
T cd05855 13 PTLQWFHEGAIL 24 (79)
T ss_pred CceEEEECCEEC
Confidence 899999999754
No 284
>PRK09027 cytidine deaminase; Provisional
Probab=39.49 E-value=54 Score=23.68 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=14.3
Q ss_pred EEEECCCChHHhhhHHHHH
Q psy3441 76 IMFYAPWCGFCKQLKPEFL 94 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~ 94 (100)
|....+=||+|+++.-.|.
T Consensus 122 I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 122 ITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred EEEEecCchhhHHHHHHhC
Confidence 3334678999999988774
No 285
>PRK08298 cytidine deaminase; Validated
Probab=39.13 E-value=19 Score=22.82 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.8
Q ss_pred CCCChHHhhhHHHH
Q psy3441 80 APWCGFCKQLKPEF 93 (100)
Q Consensus 80 a~wC~~C~~~~p~~ 93 (100)
.+=||-|+|+.-.|
T Consensus 86 ~sPCG~CRQvl~Ef 99 (136)
T PRK08298 86 LSPCGVCQERLFYW 99 (136)
T ss_pred cCCChhHHHHHHHh
Confidence 35699999998887
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=39.08 E-value=91 Score=23.80 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 62 ALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 62 ~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
....++.+-.++|-+.++.+-|..|..+...++++++
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 45 (517)
T PRK15317 9 QLKQYLELLERPIELVASLDDSEKSAELKELLEEIAS 45 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHH
Confidence 3444444444667666666689999999999998875
No 287
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=38.86 E-value=24 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=14.4
Q ss_pred CCCCCeeEEEccCCccc
Q psy3441 4 EVNLPYVIKHYKDGEFN 20 (100)
Q Consensus 4 ~~~~p~ti~~~~~g~~~ 20 (100)
+|+.|.++.|+++|..+
T Consensus 12 d~~l~~~~~W~~dg~~i 28 (85)
T cd05853 12 DHSLDIVFTWSFNGHLI 28 (85)
T ss_pred CCCCCcEEEEEECCEEC
Confidence 67888999999999654
No 288
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=38.75 E-value=41 Score=18.01 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=15.1
Q ss_pred EEEEECCCChHHhhhHHHHHHh
Q psy3441 75 LIMFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 75 lv~F~a~wC~~C~~~~p~~~~l 96 (100)
+..|+.+.|+.|++..-.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~ 23 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK 23 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc
Confidence 3445566688888887776654
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.57 E-value=43 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.9
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCCCCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGD 42 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~~~~ 42 (100)
+|++.|++|.-+..|.|....+.+..|+.+..+.
T Consensus 99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 6778899999888899999999999999988654
No 290
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=37.47 E-value=32 Score=18.79 Aligned_cols=22 Identities=0% Similarity=-0.061 Sum_probs=16.4
Q ss_pred EEEECCCChHHhhhHHHHHHhH
Q psy3441 76 IMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~~la 97 (100)
..|+.+.|+.|+++.-.++++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g 23 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG 23 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC
Confidence 3577888999988887766653
No 291
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=36.82 E-value=78 Score=18.77 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=10.3
Q ss_pred CCChHHhhhHHHH
Q psy3441 81 PWCGFCKQLKPEF 93 (100)
Q Consensus 81 ~wC~~C~~~~p~~ 93 (100)
+=|+.|+++.-.|
T Consensus 78 sPC~~C~~~l~~~ 90 (112)
T cd01283 78 SPCGACRQVLAEF 90 (112)
T ss_pred CCCHHHHHHHHHh
Confidence 3499999988766
No 292
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.52 E-value=1.1e+02 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHhcCCCc-EEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 63 LNKLLKKETRP-VLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 63 f~~~~~~~~~~-vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
+..++.+-.++ .|+.|+.+-|..|..+...++++++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~ 393 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS 393 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh
Confidence 44444443345 5778888889999999999998875
No 293
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=36.27 E-value=23 Score=26.00 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCCChHHhhhHHHHHHhHhhC
Q psy3441 80 APWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 80 a~wC~~C~~~~p~~~~la~~l 100 (100)
.+||+.|......++++++.+
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~l 114 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQAL 114 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHH
Confidence 579999999999999998763
No 294
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=35.27 E-value=25 Score=21.79 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=12.3
Q ss_pred CCCChHHhhhHHHHH
Q psy3441 80 APWCGFCKQLKPEFL 94 (100)
Q Consensus 80 a~wC~~C~~~~p~~~ 94 (100)
.+=||.|+++.-.|.
T Consensus 80 ~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 80 VSPCGACRQVLAEFA 94 (127)
T ss_pred cCccHHHHHHHHHhC
Confidence 478999999987774
No 295
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=34.24 E-value=70 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=14.7
Q ss_pred EEEECCCChHHhhhHHHHH
Q psy3441 76 IMFYAPWCGFCKQLKPEFL 94 (100)
Q Consensus 76 v~F~a~wC~~C~~~~p~~~ 94 (100)
|....+=||+|+++.-.|.
T Consensus 94 Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 94 LAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred EEEEeCCcchhHHHHHHhc
Confidence 3344788999999988874
No 296
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.10 E-value=10 Score=27.02 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=5.8
Q ss_pred ccCHHHHHHHhhC
Q psy3441 26 KETVSAFVNFLKD 38 (100)
Q Consensus 26 ~~~~~~l~~f~~~ 38 (100)
+++.+.+.+-+++
T Consensus 141 ~f~~~~l~~~l~~ 153 (273)
T COG0266 141 DFDPEYLAEKLAK 153 (273)
T ss_pred ccCHHHHHHHHhc
Confidence 4454544444433
No 297
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=33.21 E-value=54 Score=21.88 Aligned_cols=29 Identities=17% Similarity=-0.036 Sum_probs=22.3
Q ss_pred CCee-EEEccCCcccccCCCccCHHHHHHH
Q psy3441 7 LPYV-IKHYKDGEFNKNYERKETVSAFVNF 35 (100)
Q Consensus 7 ~p~t-i~~~~~g~~~~~y~g~~~~~~l~~f 35 (100)
.|.| +++-++|+....+.|.++.+.+.+.
T Consensus 146 ~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 146 EDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred CCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 4778 7888999876778888888877663
No 298
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=33.10 E-value=23 Score=19.56 Aligned_cols=20 Identities=30% Similarity=0.778 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCCcEEEEEECCCChH
Q psy3441 61 QALNKLLKKETRPVLIMFYAPWCGF 85 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a~wC~~ 85 (100)
+.|...+ +.+..++ +|||+.
T Consensus 2 eE~k~~i-~~gg~v~----~pwcg~ 21 (68)
T PF09180_consen 2 EEFKEAI-EKGGFVL----VPWCGD 21 (68)
T ss_dssp HHHHHHH-HTSSEEE----EEES-S
T ss_pred hHHHHHH-hCCCEEE----EEccCC
Confidence 4577777 3324433 788875
No 299
>KOG0913|consensus
Probab=32.82 E-value=41 Score=23.61 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=23.1
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
+||..-++|.+ ..|.|+|+..++..|+...
T Consensus 96 ptIYHvkDGeF-rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 96 PTIYHVKDGEF-RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ceEEEeecccc-ccccCcccchhHHHHHHhh
Confidence 45555567754 6799999999999999765
No 300
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=31.80 E-value=29 Score=19.83 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.7
Q ss_pred CeeEEEccCCccc
Q psy3441 8 PYVIKHYKDGEFN 20 (100)
Q Consensus 8 p~ti~~~~~g~~~ 20 (100)
|++|.||++|+..
T Consensus 14 ~a~i~W~k~~~~l 26 (80)
T cd05885 14 AATLRWYRDRKEL 26 (80)
T ss_pred CCeEEEEECCEEC
Confidence 4899999999753
No 301
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=31.76 E-value=10 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=17.9
Q ss_pred eEEEccCCcccccCCCccCHHHHHHHhhCC
Q psy3441 10 VIKHYKDGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 10 ti~~~~~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
+|.++-||..... ..--....+.+|++-.
T Consensus 8 ~irf~lN~~~~~l-~~v~P~~TlLd~LR~d 36 (493)
T COG4630 8 TIRFLLNGETRVL-SDVPPTTTLLDYLRLD 36 (493)
T ss_pred eeEEEecCceEEe-ecCCcchHHHHHHHHh
Confidence 7888888864322 2222346788999843
No 302
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=30.89 E-value=23 Score=24.52 Aligned_cols=10 Identities=30% Similarity=0.736 Sum_probs=8.1
Q ss_pred CChHHhhhHH
Q psy3441 82 WCGFCKQLKP 91 (100)
Q Consensus 82 wC~~C~~~~p 91 (100)
=|.||++|.-
T Consensus 197 PClHCKAmRt 206 (243)
T PF15468_consen 197 PCLHCKAMRT 206 (243)
T ss_pred cchhhHHHHH
Confidence 3999999863
No 303
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=43 Score=22.01 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.5
Q ss_pred CCCcEEEEEECCCChHH
Q psy3441 70 ETRPVLIMFYAPWCGFC 86 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C 86 (100)
.++.+||.-.||-||.-
T Consensus 24 ~GkVlLIVNtASkCGfT 40 (162)
T COG0386 24 KGKVLLIVNTASKCGFT 40 (162)
T ss_pred CCcEEEEEEcccccCCc
Confidence 45999999999999854
No 304
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=30.27 E-value=8.7 Score=27.05 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=5.9
Q ss_pred CChHHhhhHH
Q psy3441 82 WCGFCKQLKP 91 (100)
Q Consensus 82 wC~~C~~~~p 91 (100)
||+.||...|
T Consensus 257 ~Cp~CQ~~~~ 266 (269)
T PRK14811 257 FCPQCQPLRP 266 (269)
T ss_pred ECCCCcCCCC
Confidence 5666665543
No 305
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=29.64 E-value=58 Score=19.83 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=14.0
Q ss_pred CCCChHHhhhHHHHHHhH
Q psy3441 80 APWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 80 a~wC~~C~~~~p~~~~la 97 (100)
.+.|+.|++-...+.+.+
T Consensus 31 ~s~Cp~C~kkraeLa~~~ 48 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQSA 48 (104)
T ss_pred cccChHHHHHHHHHHHHH
Confidence 677999999877776654
No 306
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=29.46 E-value=64 Score=18.38 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=20.6
Q ss_pred eeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 9 YVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 9 ~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
.|+.+|..|+.. -.|+.+.+++.+.++.
T Consensus 50 ~t~~IF~sGki~--itGaks~~~~~~a~~~ 77 (86)
T PF00352_consen 50 ATVLIFSSGKIV--ITGAKSEEEAKKAIEK 77 (86)
T ss_dssp EEEEEETTSEEE--EEEESSHHHHHHHHHH
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHH
Confidence 788999999853 3478888887766543
No 307
>PHA02151 hypothetical protein
Probab=29.38 E-value=40 Score=22.38 Aligned_cols=14 Identities=29% Similarity=0.918 Sum_probs=11.5
Q ss_pred CCcEEEEEECCCCh
Q psy3441 71 TRPVLIMFYAPWCG 84 (100)
Q Consensus 71 ~~~vlv~F~a~wC~ 84 (100)
+..-.|.||.-||.
T Consensus 203 ~h~~~v~fy~kwct 216 (217)
T PHA02151 203 NHDRYVHFYKKWCT 216 (217)
T ss_pred cCceEEEEehhhcc
Confidence 36678999999994
No 308
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=27.98 E-value=77 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.5
Q ss_pred CeeEEEcc-CCcccccCCCccCHHHHHHHhhCC
Q psy3441 8 PYVIKHYK-DGEFNKNYERKETVSAFVNFLKDP 39 (100)
Q Consensus 8 p~ti~~~~-~g~~~~~y~g~~~~~~l~~f~~~~ 39 (100)
|+++++|. +|+.+...-|-.+.+.+.+.+++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 56777776 555555577788888888877654
No 309
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=27.37 E-value=14 Score=26.00 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=5.1
Q ss_pred cCHHHHHHHhh
Q psy3441 27 ETVSAFVNFLK 37 (100)
Q Consensus 27 ~~~~~l~~f~~ 37 (100)
++.+.+.+-+.
T Consensus 142 ~~~~~~~~~l~ 152 (274)
T PRK01103 142 FDGEYLAAKLR 152 (274)
T ss_pred CCHHHHHHHHh
Confidence 34445554443
No 310
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.32 E-value=1.8e+02 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHhcCCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 63 LNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 63 f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
...++..-.++|-+.++..-|..|..+...++++++
T Consensus 10 l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 45 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAGSHEKSKELLELLDEIAS 45 (515)
T ss_pred HHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHH
Confidence 334444334566565555578999999998888875
No 311
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=26.86 E-value=59 Score=24.80 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=19.8
Q ss_pred CCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChH
Q psy3441 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGF 85 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~ 85 (100)
+.++.+.+-+.|...+.+.+..+ .+|||+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 433 (477)
T PRK08661 404 ENTVEVDTLEEFKEAIEEKGGFV----KAPWCGD 433 (477)
T ss_pred hCeEEcCCHHHHHHHHHhCCCEE----EEEecCC
Confidence 45677777888888884432433 3799964
No 312
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=26.82 E-value=40 Score=18.30 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.1
Q ss_pred eeEEEccCCccc
Q psy3441 9 YVIKHYKDGEFN 20 (100)
Q Consensus 9 ~ti~~~~~g~~~ 20 (100)
+++.||++|...
T Consensus 13 P~v~W~kdg~~l 24 (67)
T cd05863 13 PEFQWYKDGKLI 24 (67)
T ss_pred CEEEEEECCEEC
Confidence 789999999754
No 313
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=26.31 E-value=56 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.2
Q ss_pred CCCChHHhhhHHHHHHhHhh
Q psy3441 80 APWCGFCKQLKPEFLAGRDN 99 (100)
Q Consensus 80 a~wC~~C~~~~p~~~~la~~ 99 (100)
-.-|+.|++....++.++..
T Consensus 28 l~~C~~Cr~~~~~~e~~~~~ 47 (215)
T TIGR02451 28 LALCPECRARIAAFEALGGS 47 (215)
T ss_pred HHHCHHHHHHHHHHHHHHHH
Confidence 34599999999999888654
No 314
>PF14369 zf-RING_3: zinc-finger
Probab=26.06 E-value=14 Score=17.79 Aligned_cols=8 Identities=38% Similarity=1.560 Sum_probs=6.1
Q ss_pred CChHHhhh
Q psy3441 82 WCGFCKQL 89 (100)
Q Consensus 82 wC~~C~~~ 89 (100)
||-.|++.
T Consensus 4 wCh~C~~~ 11 (35)
T PF14369_consen 4 WCHQCNRF 11 (35)
T ss_pred eCccCCCE
Confidence 88888764
No 315
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=25.97 E-value=1.1e+02 Score=19.62 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=25.6
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHhHhhC
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~la~~l 100 (100)
.-+.+.++++.++-|.-+.-.++.+|+.|
T Consensus 128 ~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f 156 (171)
T PF07700_consen 128 NELTLHYRSPRPGLCPYVIGLIRGAAKHF 156 (171)
T ss_dssp TEEEEEEEESSSSTHHHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999865
No 316
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=25.16 E-value=84 Score=16.73 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=14.5
Q ss_pred EEECCCChHHhhhHHHHHHh
Q psy3441 77 MFYAPWCGFCKQLKPEFLAG 96 (100)
Q Consensus 77 ~F~a~wC~~C~~~~p~~~~l 96 (100)
.|+.+.|+.|++..-.++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~ 22 (74)
T cd03058 3 LLGAWASPFVLRVRIALALK 22 (74)
T ss_pred EEECCCCchHHHHHHHHHHc
Confidence 35677888888887766654
No 317
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=24.99 E-value=59 Score=21.04 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=13.6
Q ss_pred CcEEEEEECCCChHHhhhHHHH
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
+.+.+..--+=|++|+.-.+.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~ 121 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSM 121 (146)
T ss_pred CeEEEEECcccchHHHHHHHHH
Confidence 3344444488999999544433
No 318
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=24.95 E-value=33 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=17.3
Q ss_pred CCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhh
Q psy3441 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQ 88 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~ 88 (100)
..+|+. .++....+- . .+-+|.-|.|-|++|+.
T Consensus 64 AGiVe~-VG~gVt~vk--p-GDhVI~~f~p~CG~C~~ 96 (366)
T COG1062 64 AGIVEA-VGEGVTSVK--P-GDHVILLFTPECGQCKF 96 (366)
T ss_pred ccEEEE-ecCCccccC--C-CCEEEEcccCCCCCCch
Confidence 345544 344433322 3 33455567888877764
No 319
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=24.94 E-value=1.6e+02 Score=17.59 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=13.5
Q ss_pred CCCcc-CHHHHHHHhhCC
Q psy3441 23 YERKE-TVSAFVNFLKDP 39 (100)
Q Consensus 23 y~g~~-~~~~l~~f~~~~ 39 (100)
..+.. +.++|.+|+++.
T Consensus 93 ~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 93 MEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCcccCCHHHHHHHHHHh
Confidence 46677 899999998764
No 320
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=24.86 E-value=98 Score=19.50 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCcccccCCC--ccCHHHHHHHhhCCCCCCCCCcccccCCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChHHhhhHHHH
Q psy3441 16 DGEFNKNYER--KETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93 (100)
Q Consensus 16 ~g~~~~~y~g--~~~~~~l~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~ 93 (100)
.++.+..|-. .++.+.-.+++.+... + ..+++. +.++.|+++|-|| -|+-+.+...+
T Consensus 42 ~~g~Pvaf~~WA~ls~e~e~~~l~~~~~---------------l-~~~dW~----sG~rlWiiD~iAP-fG~~~~~~~~l 100 (133)
T PF02794_consen 42 EDGRPVAFCSWAFLSEEAEARYLEDPRS---------------L-SPEDWN----SGDRLWIIDWIAP-FGHARAMVRDL 100 (133)
T ss_pred eCCeEEEEEEhhcCCHHHHHHHHcCCCC---------------C-CchhcC----CCCeEEEEEEECC-CCcHHHHHHHH
Confidence 3334444432 4677777777766532 1 223443 3458999999999 48888887776
Q ss_pred HH
Q psy3441 94 LA 95 (100)
Q Consensus 94 ~~ 95 (100)
.+
T Consensus 101 r~ 102 (133)
T PF02794_consen 101 RR 102 (133)
T ss_pred Hh
Confidence 65
No 321
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=24.77 E-value=95 Score=21.48 Aligned_cols=19 Identities=11% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCCcEEEEEEC
Q psy3441 61 QALNKLLKKETRPVLIMFYA 80 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a 80 (100)
.+|++.+.++ ..++|.||-
T Consensus 124 ~~FEr~L~~~-G~~IlKffl 142 (230)
T TIGR03707 124 PEFERMLVRD-GIHLFKYWL 142 (230)
T ss_pred HHHHHHHHHC-CCEEEEEEE
Confidence 4688888776 788999984
No 322
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=24.71 E-value=69 Score=24.42 Aligned_cols=30 Identities=33% Similarity=0.726 Sum_probs=19.7
Q ss_pred CCeEEcCCHHHHHHHHhcCCCcEEEEEECCCChH
Q psy3441 52 QAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGF 85 (100)
Q Consensus 52 ~~~v~~~~~~~f~~~~~~~~~~vlv~F~a~wC~~ 85 (100)
..++.+.+-++|...+.+. +.++ -+|||+.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~ 427 (472)
T TIGR00408 398 QKIVIVETLEEIKQALNEK-RGVV---LVPWCGE 427 (472)
T ss_pred hCeEEcCCHHHHHHHHHhC-CCEE---EEEecCC
Confidence 4567777788888888654 3232 3799963
No 323
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=24.59 E-value=1.7e+02 Score=17.80 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=22.4
Q ss_pred ccCCCCCeeEEEccCCcccccCCCccCHHHHHHHhhC
Q psy3441 2 KVEVNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKD 38 (100)
Q Consensus 2 ~~~~~~p~ti~~~~~g~~~~~y~g~~~~~~l~~f~~~ 38 (100)
+++|+.-..+.+-++|+....+.+..+.+.|-..|-.
T Consensus 74 ~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 74 RIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 4556633344445666655567777777777666544
No 324
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=24.40 E-value=47 Score=18.59 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=10.2
Q ss_pred eeEEEccCCccc
Q psy3441 9 YVIKHYKDGEFN 20 (100)
Q Consensus 9 ~ti~~~~~g~~~ 20 (100)
+++.||++|..+
T Consensus 13 P~v~W~k~g~~i 24 (81)
T cd04971 13 PTLTWYHNGAVL 24 (81)
T ss_pred CcEEEEECCEEC
Confidence 889999999754
No 325
>KOG1348|consensus
Probab=23.75 E-value=2.6e+02 Score=21.27 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.9
Q ss_pred cCCCCCeeEEEccCCc-----ccccCCC-ccCHHHHHHHhhCCC
Q psy3441 3 VEVNLPYVIKHYKDGE-----FNKNYER-KETVSAFVNFLKDPK 40 (100)
Q Consensus 3 ~~~~~p~ti~~~~~g~-----~~~~y~g-~~~~~~l~~f~~~~~ 40 (100)
.||- |.+|+=-.+|+ .+++|.| +.+.++|..-+....
T Consensus 96 ~NPr-pG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~ 138 (477)
T KOG1348|consen 96 ENPR-PGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDA 138 (477)
T ss_pred CCCC-CceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhccc
Confidence 4676 88999888886 3678888 599999998887543
No 326
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.36 E-value=20 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=5.6
Q ss_pred cCHHHHHHHhhC
Q psy3441 27 ETVSAFVNFLKD 38 (100)
Q Consensus 27 ~~~~~l~~f~~~ 38 (100)
.+.+.+.+.+++
T Consensus 151 ~~~~~~~~~l~~ 162 (282)
T PRK13945 151 FSVEYLKKKLKK 162 (282)
T ss_pred CCHHHHHHHHhc
Confidence 344445444443
No 327
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=23.08 E-value=78 Score=17.30 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=9.6
Q ss_pred eeEEEccCCcc
Q psy3441 9 YVIKHYKDGEF 19 (100)
Q Consensus 9 ~ti~~~~~g~~ 19 (100)
+++.|+++|..
T Consensus 13 P~v~W~k~g~~ 23 (77)
T cd05875 13 PTFQWTRNGKF 23 (77)
T ss_pred CEEEEEECCEE
Confidence 89999999964
No 328
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=23.07 E-value=1e+02 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=19.0
Q ss_pred CcEEEEEECCCChHHhhhHHHHHHhH
Q psy3441 72 RPVLIMFYAPWCGFCKQLKPEFLAGR 97 (100)
Q Consensus 72 ~~vlv~F~a~wC~~C~~~~p~~~~la 97 (100)
...+..|+.++|+.|++..-.+++..
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~g 33 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKG 33 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCC
Confidence 44555666788999999887776653
No 329
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=22.99 E-value=1.1e+02 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=14.4
Q ss_pred EEEEC--CCChHHhhhHHHHHH
Q psy3441 76 IMFYA--PWCGFCKQLKPEFLA 95 (100)
Q Consensus 76 v~F~a--~wC~~C~~~~p~~~~ 95 (100)
|..|+ +=|..|..+...|.+
T Consensus 99 i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 99 IDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred EEEEecCCcChhHHHHHHHHHH
Confidence 44454 559999998887765
No 330
>KOG2983|consensus
Probab=21.70 E-value=47 Score=23.95 Aligned_cols=28 Identities=29% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCcEEEEEECCCChHHhhhHHHHHHhHh
Q psy3441 70 ETRPVLIMFYAPWCGFCKQLKPEFLAGRD 98 (100)
Q Consensus 70 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~ 98 (100)
.++.+||+| .|||+.-..+.=.|++|+.
T Consensus 240 ~~kv~lID~-Npf~~~TdsLlftWeEl~s 267 (334)
T KOG2983|consen 240 ERKVWLIDF-NPFCGSTDSLLFTWEELES 267 (334)
T ss_pred CCcEEEEec-cCccCccccceeeHHHHHh
Confidence 358899986 8999999999888888864
No 331
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=21.39 E-value=1.1e+02 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCcEEEEEEC
Q psy3441 61 QALNKLLKKETRPVLIMFYA 80 (100)
Q Consensus 61 ~~f~~~~~~~~~~vlv~F~a 80 (100)
.+|++.+.++ ..++|.||-
T Consensus 124 ~~FEr~L~~~-G~~IiKffl 142 (228)
T PF03976_consen 124 NRFERMLADD-GTLIIKFFL 142 (228)
T ss_dssp HHHHHHHHHT-TEEEEEEEE
T ss_pred HHHHHHHHHC-CCeEEEEEE
Confidence 5788888776 788999983
Done!