RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3441
(100 letters)
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 58.5 bits (142), Expect = 8e-13
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 42 DIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
D P EED V+ L + L + +L+ FYAPWCG CK L PE+
Sbjct: 1 DAPEEEDH----VLVL-RKSNFAEALAAH-KYLLVEFYAPWCGHCKALAPEY 46
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 57.7 bits (140), Expect = 2e-12
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 42 DIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++ + E VV L T + + ++ + V +++Y PW +
Sbjct: 6 NVA-NDGERPSRVVEL-TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLW 55
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 56.2 bits (136), Expect = 7e-12
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S+ V+ L TP N+ + + L+ FYAPWCG C++L PE+
Sbjct: 14 SSSDDVIEL-TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEW 57
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 56.3 bits (136), Expect = 9e-12
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S+ V+ L T + +K + ++ FYAPWCG CK L+PE+
Sbjct: 4 GSSGDVIEL-TDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEW 47
Score = 26.2 bits (58), Expect = 1.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 11 IKHYKDGEFNKNYERKETVSAFVNFLKDPKGDI--PWEEDESAQA 53
IK ++ GE +Y+ T S V+ D D P E ES +
Sbjct: 87 IKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGPS 131
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 55.1 bits (133), Expect = 3e-11
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 39 PKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
D ++E+ V L + + + VL+ FYAPWCG CKQ PE+
Sbjct: 6 SGDDDLEVKEENG--VWVL-NDGNFDNFVADK-DTVLLEFYAPWCGHCKQFAPEY 56
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 56.4 bits (136), Expect = 3e-11
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 39 PKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
D ++E+ V+ L + + + VL+ FYAPWCG CKQ PE+
Sbjct: 4 GSEDDLEVKEENG--VLVL-NDANFDNFVADK-DTVLLEFYAPWCGHCKQFAPEY 54
Score = 56.4 bits (136), Expect = 3e-11
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 11 IKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKE 70
IK K G+ +YE T V +++ E V + T + ++++
Sbjct: 93 IKILKKGQA-VDYEGSRTQEEIVAKVREVSQPDWTPPPE----VTLVLTKENFDEVVNDA 147
Query: 71 TRPVLIMFYAPWCGFCKQLKPEFLA 95
+L+ FYAPWCG CK+L PE+
Sbjct: 148 -DIILVEFYAPWCGHCKKLAPEYEK 171
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 54.3 bits (131), Expect = 4e-11
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S+ V + + + ++ + VLI FYAPWCG CKQL+P +
Sbjct: 4 GSSGPVKVV-VGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIY 47
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive
methylation; HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 55.8 bits (134), Expect = 5e-11
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ L + + + F+A WCG C P +
Sbjct: 14 LTLL-QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTW 52
Score = 38.1 bits (88), Expect = 1e-04
Identities = 5/88 (5%), Positives = 19/88 (21%)
Query: 7 LPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKL 66
+ + +G V L D + + +
Sbjct: 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFF 152
Query: 67 LKKETRPVLIMFYAPWCGFCKQLKPEFL 94
+ + ++F +++ +
Sbjct: 153 ARNNEEYLALIFEXGGSYLAREVALDLS 180
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 53.5 bits (129), Expect = 8e-11
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 DESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S V + + N+++ +T+ VLI FYAPWCG CK L P++
Sbjct: 3 LGSEGPVTVV-VAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKY 47
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 55.1 bits (132), Expect = 1e-10
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 45 WEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++ D + L TP++ +K + L+ FYAPWCG CK+L F
Sbjct: 13 YDSDPH---ISEL-TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTF 57
Score = 29.3 bits (65), Expect = 0.17
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 2/67 (2%)
Query: 26 KETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKK--ETRPVLIMFYAPWC 83
+ ++V +VV ++ + K FY+
Sbjct: 138 LSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSISN 197
Query: 84 GFCKQLK 90
KQL
Sbjct: 198 KKLKQLT 204
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 55.1 bits (132), Expect = 2e-10
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKD--------PKGDIPWEEDESAQAVVHLPT 59
+I ++ K + T F ED Q V L
Sbjct: 197 VRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVL-V 255
Query: 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ + E + V + FYAPWCG CKQL P +
Sbjct: 256 GKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIW 289
Score = 42.7 bits (100), Expect = 3e-06
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 2 KVEVNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQ 61
K +++ V+ K E N+E + T ++F+K + +V T Q
Sbjct: 77 KYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIK-----------HNQLPLVIEFTEQ 125
Query: 62 ALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
K+ E + +++F F
Sbjct: 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNF 157
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 52.3 bits (126), Expect = 2e-10
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V+ L T + + + I FYAPWCG CK L P +
Sbjct: 6 TVLAL-TENNFDDTIAEG--ITFIKFYAPWCGHCKTLAPTW 43
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 54.4 bits (130), Expect = 3e-10
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 19 FNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMF 78
+ + + ++ + +D W QA + L TPQ N+ + + ++ F
Sbjct: 624 YPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDL-TPQTFNEKVLQGKTHWVVDF 682
Query: 79 YAPWCGFCKQLKPEF 93
YAPW G + PEF
Sbjct: 683 YAPWSGPSQNFAPEF 697
Score = 51.7 bits (123), Expect = 2e-09
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 34 NFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ K + + ++ V L P + P L+ F+APW + L PE
Sbjct: 422 HGKKILYDILAFAKESVNSHVTTL-GP---QNFPASDKEPWLVDFFAPWSPPSRALLPEL 477
Score = 51.3 bits (122), Expect = 4e-09
Identities = 7/83 (8%), Positives = 19/83 (22%), Gaps = 12/83 (14%)
Query: 11 IKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKE 70
+ ++ G Y + + V F V L + ++
Sbjct: 191 LFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS----------TVTEL-STGNFVNAIETA 239
Query: 71 TRPVLIMFYAPWCGFCKQLKPEF 93
+ + +C +
Sbjct: 240 -FAAGVGWLITFCSKGEDCLTSQ 261
Score = 45.5 bits (107), Expect = 3e-07
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 11 IKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLK-- 68
+ ++ YE + + F++D + +VV L TP N+L+K
Sbjct: 513 TVVFNQSSIHE-YEGHHSAEQILEFIEDLRNP----------SVVSL-TPSTFNELVKQR 560
Query: 69 KETRPVLIMFYAPWCGFCKQLKPEF 93
K ++ FY+PW + L PE+
Sbjct: 561 KHDEVWMVDFYSPWSHPSQVLMPEW 585
Score = 42.4 bits (99), Expect = 5e-06
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 15 KDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDES---AQAVVHLPTPQALNKLLKKET 71
KD + K Y++ N + + D + + + +
Sbjct: 75 KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSG- 133
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ FY+P L P +
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTW 155
Score = 25.9 bits (56), Expect = 3.1
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLL 67
++ G + E+ V FL + E L + L L
Sbjct: 295 ASTTAYFPPGATLNDREKSS-----VLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRL 349
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEF 93
L+ F+ + PE
Sbjct: 350 AHH--RWLVFFH--FGKNENANDPEL 371
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 53.8 bits (128), Expect = 5e-10
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ L ++ + + + F+A WCG P +
Sbjct: 14 LTLL-DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTW 52
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 51.2 bits (123), Expect = 7e-10
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S+ V + T + +LL+ +I FYAPWC C+ L+PE+
Sbjct: 4 GSSGNVRVI-TDENWRELLEG---DWMIEFYAPWCPACQNLQPEW 44
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 52.0 bits (124), Expect = 2e-09
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 42 DIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ P + + VV L T + ++LKK VL ++Y K + +F
Sbjct: 3 NFPTYDGKDR--VVSL-TEKNFKQVLKKY--DVLCLYYHESVSSDKVAQKQF 49
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae}
SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 52.2 bits (124), Expect = 2e-09
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 44 PWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++SA VV L + N+ ++ VL F+APWCG CK + PE+
Sbjct: 8 AVAPEDSA--VVKL-ATDSFNEYIQ-SHDLVLAEFFAPWCGHCKNMAPEY 53
Score = 51.4 bits (122), Expect = 3e-09
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 2 KVEVNLPYVIKHYKDGEFNKNYERKE-TVSAFVNFLKDPKGDIP------WEEDESAQAV 54
+ +L Y + + F++ ++ A + +KD E E+ +
Sbjct: 300 DMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSS 359
Query: 55 VHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V + ++++ + VL+++YAPWCG CK+L P +
Sbjct: 360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTY 398
Score = 27.5 bits (60), Expect = 0.71
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 11 IKHYKDGEFNK--NYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLK 68
+K +K+ + N +YE T A V F+ + + + +
Sbjct: 90 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYL----ANETFVTPVI 145
Query: 69 KETRPVLIMFYAPWCGFCKQLKPEF 93
++ + F A + + ++
Sbjct: 146 VQSGKIDADFNATFYSMANKHFNDY 170
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 49.7 bits (119), Expect = 2e-09
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 51 AQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
QA + L TPQ N+ + + ++ FYAPWCG C+ PEF
Sbjct: 2 PQASIDL-TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF 43
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 49.6 bits (118), Expect = 1e-08
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 51 AQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ L + ++++L L+ FYA WC F + L P F
Sbjct: 4 GSEITSL-DTENIDEILNN-ADVALVNFYADWCRFSQMLHPIF 44
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin
fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 48.9 bits (115), Expect = 2e-08
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 49 ESAQAVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
+VV L + +++ + P +++FY CG C++ F
Sbjct: 20 HLDSSVVDL-SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTF 64
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 48.7 bits (115), Expect = 3e-08
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 10 VIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPW------EEDESAQAVVHLPTPQAL 63
I+ K +F E A FL+D ES V + +
Sbjct: 303 AIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENF 362
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++++ E + VLI FYAPWCG CK L+P++
Sbjct: 363 DEIVNNENKDVLIEFYAPWCGHCKNLEPKY 392
Score = 46.4 bits (109), Expect = 2e-07
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 54 VVHLPTPQALNKLLKKETRP--VLIMFYAPWCGFCKQLKPEF 93
V+ L T + +L+ F+APWCG K+L PE+
Sbjct: 3 VLEL-TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEY 43
Score = 36.4 bits (83), Expect = 7e-04
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 11 IKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKE 70
+K ++DGE Y+ T V+ + ++ A V L T + K + +
Sbjct: 79 LKIFRDGEEAGAYDGPRTADGIVS----------HLKKQAGPASVPLRTEEEFKKFISDK 128
Query: 71 TRPVLIMFYAPWCGFCKQ 88
++ F+
Sbjct: 129 -DASIVGFFDDSFSEAHS 145
Score = 25.2 bits (54), Expect = 5.5
Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 2 KVEVNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQ 61
+ + N +I NK ++ A+ + ++ H+
Sbjct: 171 EYDDNGEGIILFRPSHLTNKFEDKT---VAYTEQKMTSGKIKKFIQENIFGICPHMTEDN 227
Query: 62 ALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ + +LI +Y + +
Sbjct: 228 KD----LIQGKDLLIAYYDVDYEKNAKGSNYW 255
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 45.8 bits (108), Expect = 1e-07
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEFLA 95
P++++ + WCG CK LKP+F
Sbjct: 43 AASGLPLMVIIHKSWCGACKALKPKFAE 70
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 45.6 bits (108), Expect = 1e-07
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 49 ESAQAVVHLP-----TPQALNK-LLKKETRPVLIMFYAPWCGFCKQLKPE 92
+AQ HL T LN+ L++ + +PV++ YA WC CK+ +
Sbjct: 3 HTAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKY 52
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 46.1 bits (109), Expect = 2e-07
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 50 SAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLA 95
+ + L K++ K ++ VL+ F + KQ + + LA
Sbjct: 3 HTKGALPL-DTVTFYKVIPK-SKFVLVKFDTQYPYGEKQDEFKRLA 46
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 44.6 bits (106), Expect = 2e-07
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
++ L L LL++ + + V++ F+A WCG CK + P F
Sbjct: 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLF 55
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 44.4 bits (105), Expect = 3e-07
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
+ L +LN++ + ++I F A WC C ++K F
Sbjct: 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYF 62
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 43.5 bits (103), Expect = 4e-07
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 53 AVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
V + + L +R ++ F CG C ++ P F
Sbjct: 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAF 43
>4euy_A Uncharacterized protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, unknown
function; 2.90A {Bacillus cereus}
Length = 105
Score = 43.0 bits (102), Expect = 5e-07
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ T + L ++++ + VL+ CG C + +
Sbjct: 1 GMNTFKTIEELATYIEEQ-QLVLLFIKTENCGVCDVMLRKV 40
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 43.1 bits (102), Expect = 7e-07
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 46 EEDESAQAVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
+V + + A + L + V++ F A WCG K +KP F
Sbjct: 5 HHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFF 53
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 42.7 bits (101), Expect = 9e-07
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 46 EEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
S ++ L L+K+ ++I FYA WCG CK ++P
Sbjct: 6 HHHSSYTSITKLTNLTEFRNLIKQN-DKLVIDFYATWCGPCKMMQPHL 52
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 43.3 bits (102), Expect = 9e-07
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 47 EDESAQAVVHLPTPQALNKLLKKET-RPVLIMFYAPWCGFCKQLKPEF 93
+ + AV + + +LL+ + +++ F+APW C Q+
Sbjct: 7 AEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVM 54
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 42.8 bits (101), Expect = 1e-06
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+VV + + + ++ ++ + F A WCG CK ++
Sbjct: 20 SVVDVYSVEQFRNIMSED-ILTVAWFTAVWCGPCKTIERPM 59
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 42.3 bits (100), Expect = 1e-06
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 60 PQALNKLLKKETRPVLIMFYAPWCGFCKQLKPE 92
P+AL L + R V++ F++ C +C+Q+
Sbjct: 9 PEAL-ALAQAHGRMVMVYFHSEHCPYCQQMNTF 40
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo
PSI-2, protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 42.4 bits (100), Expect = 2e-06
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPE 92
+ E + + + + WCG CK+L
Sbjct: 24 EVEDKLLFVDCFTTWCGPCKRLSKV 48
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 42.5 bits (100), Expect = 2e-06
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 41 GDIPWEEDESAQAVVHLPTPQALNKLLKKET---RPVLIMFYAPWCGFCKQLKPEF 93
D + + V + T + ++ L + + + VL F A WCG +Q+ P +
Sbjct: 13 DDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYY 68
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae}
PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 41.9 bits (99), Expect = 2e-06
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V T + + ++ + V++ FYA WCG CK + P
Sbjct: 8 VTQFKTASEFDSAIAQD-KLVVVDFYATWCGPCKMIAPMI 46
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 42.1 bits (99), Expect = 2e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
KE P +IMF C +C +++
Sbjct: 24 KEGIPTIIMFKTDTCPYCVEMQK 46
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 42.3 bits (99), Expect = 2e-06
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 56 HLPTPQALNKLLKKET-RPVLIMFYAPWCGFCKQLKPEF 93
L + + +++ +K + +++ F C QL
Sbjct: 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDIL 45
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A
3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 41.5 bits (98), Expect = 2e-06
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
V + + A + L + V++ F A WCG CK +KP F
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFF 42
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A
{Fasciola hepatica}
Length = 104
Score = 41.1 bits (97), Expect = 3e-06
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKPEF 93
+ L T L KL+ + + R +++ F+A WCG C+ + P+
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKV 41
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 41.6 bits (98), Expect = 3e-06
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+PV++MFY+P C +CK ++P
Sbjct: 22 DSKKPVVVMFYSPACPYCKAMEP 44
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 41.1 bits (97), Expect = 3e-06
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLKKET-RPVLIMFYAPWCGFCKQLKPEF 93
V + L+ L K + + V++ F+A WCG CK + P+
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKL 42
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 42.0 bits (98), Expect = 3e-06
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEFLA 95
+K +P++++ + C + + LK F
Sbjct: 41 QKSKKPLMVIHHLEDCQYSQALKKVFAQ 68
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 41.2 bits (97), Expect = 3e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 53 AVVHLPTPQALNKLLKK---ETRPVLIMFYAPWCGFCKQLKPEF 93
AV+ T Q + + + V+I F A WCG C+ + P F
Sbjct: 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVF 50
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics; 1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 41.1 bits (97), Expect = 3e-06
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
E + L+MF C C+++ P
Sbjct: 20 DEGKACLVMFSRKNCHVCQKVTP 42
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP:
c.47.1.1
Length = 112
Score = 41.1 bits (97), Expect = 3e-06
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 54 VVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V + + + ++ + V++ F+A WCG CK++ P +
Sbjct: 10 VKIVTSQAEFDSIISQN-ELVIVDFFAEWCGPCKRIAPFY 48
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 40.8 bits (96), Expect = 5e-06
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V + + +PV++ + WCG K + P++
Sbjct: 6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKY 46
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity,
IGE, fungi, epitope, allergen; 1.41A {Malassezia
sympodialis}
Length = 121
Score = 40.8 bits (96), Expect = 5e-06
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+V + + ++ + + V+I F+A WCG CK + P F
Sbjct: 16 SVQVISSYDQFKQVTGGD-KVVVIDFWATWCGPCKMIGPVF 55
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea}
SCOP: c.47.1.1
Length = 124
Score = 41.2 bits (97), Expect = 5e-06
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 46 EEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
E + V + + +PV++ + WCG CK + P++
Sbjct: 12 EMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKY 59
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 42.1 bits (99), Expect = 5e-06
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 50 SAQAVVHLPTPQALNKLLKK-ETRPVLIMFYAPWCGFCKQLKP 91
S + +V++ L ++L++ T PVL F++ C QL P
Sbjct: 5 SVENIVNI-NESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTP 46
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 41.0 bits (96), Expect = 6e-06
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEF 93
K+ +P L++F A WC C+ L
Sbjct: 26 KRTHKPTLLVFGANWCTDCRALDKSL 51
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 40.4 bits (95), Expect = 7e-06
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 51 AQAVVHLPTPQALNKLLKK---ETRPVLIMFYAPWCGFCKQLKPEF 93
+V+ + + A + L K E +P+++ F A WCG CK + P F
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF 46
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 40.0 bits (94), Expect = 8e-06
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 54 VVHLPTPQALNKLLKKET--RPVLIMFYAPWCGFCKQLKPEF 93
V+ + + L + +++ F+ W CK LK F
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVF 43
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 40.1 bits (94), Expect = 8e-06
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 51 AQAVVHLP-TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ +VH T +AL +K+ VL+ F+A WCG C++L
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL 45
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 40.5 bits (95), Expect = 9e-06
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
TP+ +LL+ ++ Y+ C C + P
Sbjct: 22 TPEEFRQLLQG---DAILAVYSKTCPHCHRDWP 51
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 40.1 bits (94), Expect = 1e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 53 AVVHLPTPQALNKLLKKET---RPVLIMFYAPWCGFCKQLKPEF 93
V+ + + + +++ + V+I F A WCG C+ + P F
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVF 56
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides
fragilis} PDB: 3hyp_A
Length = 141
Score = 40.2 bits (94), Expect = 1e-05
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 48 DESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
+ + +P ++ FYA WCG CK + P
Sbjct: 29 RAEFLKKI-ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAP 71
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 40.1 bits (94), Expect = 1e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 54 VVHLPTPQALNKLLKK---ETRPVLIMFYAPWCGFCKQLKPEF 93
V+ + + K + V+I F A WCG C+ + P F
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVF 58
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 39.7 bits (93), Expect = 2e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 48 DESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
A V+ + + P ++ FYA WCG CK + P
Sbjct: 16 KAEFLAKVYNFEKNPEEWKYEGDK-PAIVDFYADWCGPCKMVAP 58
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 40.4 bits (94), Expect = 2e-05
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 42 DIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
D P + V+++ + + KK + ++++ P +
Sbjct: 5 DFPEYDGVDR--VINV-NAKNYKNVFKK-YEVLALLYHEPPEDDKASQRQ 50
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 38.9 bits (91), Expect = 3e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 54 VVHLPTPQALNKLLKKET---RPVLIMFYAPWCGFCKQLKPEF 93
V+ T + N+ L+K V++ F A WCG C+ + P F
Sbjct: 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFF 60
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 137
Score = 39.1 bits (91), Expect = 3e-05
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 50 SAQAVVHLPTPQALNKLLKKETR-PVLIMFYAPWCGFCKQLKPEF 93
S+ + + + +++ L+++ R ++ F+A W C+ P +
Sbjct: 5 SSGYIKYF-NDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIY 48
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 38.5 bits (90), Expect = 3e-05
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ ++ F+ C CK ++
Sbjct: 17 EGLSDAIVFFHKNLCPHCKNMEK 39
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 39.0 bits (91), Expect = 4e-05
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
V++ T + L+KLL+ + P++I F+APWCG C+ P F
Sbjct: 39 EVINA-TAETLDKLLQDDL-PMVIDFWAPWCGPCRSFAPIF 77
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 38.1 bits (89), Expect = 4e-05
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 67 LKKETRPVLIMFYAPWCGFCKQLKPEF 93
K + +++ F A WC CK + P F
Sbjct: 22 GKGSQKLIVVDFTASWCPPCKMIAPIF 48
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A
{Plasmodium falciparum}
Length = 128
Score = 38.1 bits (89), Expect = 6e-05
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 64 NKLLKKETRPVLIMFYAPWCGFCKQLKP 91
N + K T +++ F+A WC C
Sbjct: 36 NGVNMKNT-VIVLYFFAKWCQACTMQST 62
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 38.1 bits (89), Expect = 6e-05
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 53 AVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
++ + PV++ F+A WCG CK L P
Sbjct: 13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGP 51
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 37.3 bits (87), Expect = 8e-05
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
++ F+A WC C L P
Sbjct: 14 ASHEIAVVDFWAEWCAPCLILAP 36
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 38.2 bits (89), Expect = 9e-05
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 73 PVLIMFYAPWCGFCKQLKPEF 93
P+L+ F+APWCG C+Q+ P+F
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQF 86
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 36.5 bits (85), Expect = 1e-04
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 71 TRPVLIMFYAPWCGFCKQLKP 91
++ + +F +P C C K
Sbjct: 2 SKVKIELFTSPMCPHCPAAKR 22
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.82A
{Thermus thermophilus}
Length = 140
Score = 37.4 bits (87), Expect = 1e-04
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
L+ F+APWCG C+ + P
Sbjct: 52 LTLVDFFAPWCGPCRLVSP 70
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase;
1.00A {Acetobacter aceti}
Length = 107
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K + VL+ F+A WCG CK + P
Sbjct: 18 KASGLVLVDFWAEWCGPCKMIGP 40
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 36.9 bits (86), Expect = 1e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +PVL+ F+APWCG C+ + P
Sbjct: 17 KSDKPVLVDFWAPWCGPCRMIAP 39
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 36.8 bits (86), Expect = 2e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +L+ F+A WCG CK + P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAP 40
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 36.5 bits (85), Expect = 2e-04
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ + PVL+ F+APWCG C+ + P
Sbjct: 17 ESSVPVLVDFWAPWCGPCRIIAP 39
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 36.9 bits (86), Expect = 2e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +PVL+ F+A WCG C+Q+ P
Sbjct: 21 KNDKPVLVDFWAAWCGPCRQIAP 43
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 36.5 bits (85), Expect = 2e-04
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ PVL+ F+A WCG C+ + P
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAP 37
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 36.9 bits (86), Expect = 2e-04
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 47 EDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKP 91
E ++ V+ + T + K +PVL+ F+A WCG C+ + P
Sbjct: 2 ETAMSKGVITI-TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSP 45
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea}
SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 36.5 bits (85), Expect = 2e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ PV++ F+APWCG CK + P
Sbjct: 16 ESEVPVMVDFWAPWCGPCKLIAP 38
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase;
3.00A {Escherichia coli}
Length = 128
Score = 37.0 bits (86), Expect = 2e-04
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +L+ F+A WCG K + P
Sbjct: 38 KADGAILVDFWAEWCGPAKMIAP 60
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 36.5 bits (85), Expect = 2e-04
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ VL+ F+A WC C+ + P
Sbjct: 16 GQHPLVLVDFWAEWCAPCRMIAP 38
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 36.5 bits (85), Expect = 2e-04
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
VL F+APWCG K + P
Sbjct: 19 VVLADFWAPWCGPSKMIAP 37
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing,
alternative splicing, FBP interacting repressor, RRM,
electron transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
K +L+ F+A WCG CK + P
Sbjct: 28 KADGAILVDFWAEWCGPCKMIAP 50
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 36.2 bits (84), Expect = 2e-04
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+ + VL+ +A WC C +P
Sbjct: 19 RNNKLVLVDCWAEWCAPCHLYEP 41
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 36.6 bits (85), Expect = 2e-04
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 69 KETRPVLIMFYAPWCGFCKQLKP 91
+PVL+ F+A WCG CK + P
Sbjct: 28 SSNKPVLVDFWATWCGPCKMVAP 50
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 36.2 bits (84), Expect = 3e-04
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 73 PVLIMFYAPWCGFCKQLKP 91
L+ F+A CG CK + P
Sbjct: 21 VQLVDFWATACGPCKMIAP 39
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 35.6 bits (82), Expect = 6e-04
Identities = 1/26 (3%), Positives = 5/26 (19%)
Query: 66 LLKKETRPVLIMFYAPWCGFCKQLKP 91
+ + +L+
Sbjct: 31 IKRVGDGVILLSSDPRRTPEVSDNPV 56
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 34.9 bits (80), Expect = 0.001
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 50 SAQAVVHLPTPQALNKLLKKETRPVLIMF-YAPWCGFCKQLKPE 92
+A + +AL K++ +P+ + F + WC +C +++ +
Sbjct: 27 AAANLQWESYAEALEHS-KQDHKPIGLFFTGSDWCMWCIKMQDQ 69
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 35.0 bits (80), Expect = 0.001
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPE 92
++ +PV++ F C C++++
Sbjct: 44 RQHNKPVMLDFTGYGCVNCRKMELA 68
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 33.9 bits (78), Expect = 0.002
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLK-KETRPVLIMFYAPWCGFCKQLKPEF 93
+ + Q +N++ +E V+I Y C +
Sbjct: 5 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHL 45
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 34.1 bits (78), Expect = 0.002
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 54 VVHLPTPQALNKLLK-KETRPVLIMFYAPWCGFCKQLKPEF 93
+ + Q +N++ ++ V+I Y C +
Sbjct: 12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHL 52
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 33.0 bits (76), Expect = 0.002
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 74 VLIMFYAPWCGFCKQLKP 91
+ +F +P C +C
Sbjct: 4 NIEVFTSPTCPYCPMAIE 21
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 33.5 bits (76), Expect = 0.002
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEFLAGRDNL 100
P L L++ M+ A WC C+ K F A D +
Sbjct: 2 PLAVGLAAHLRQIG---GTMYGAYWCPHCQDQKELFGAAFDQV 41
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 33.9 bits (78), Expect = 0.002
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
++ FY P C C++ + F
Sbjct: 30 TMLFFYDPDCSNCRKFEKLF 49
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 33.7 bits (77), Expect = 0.004
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLKPEFLA 95
+ + + ++I C+ L + +
Sbjct: 39 QMQNKWLMINIQNVQDFACQCLNRDVWS 66
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 33.1 bits (75), Expect = 0.004
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLKPE 92
+ L+MF P C +C + E
Sbjct: 8 HHHGSDDDDKAELRLLMFEQPGCLYCARWDAE 39
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 33.7 bits (76), Expect = 0.004
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 31 AFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
+ D G P + + + + V+ +F CG+C +L
Sbjct: 46 IIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLH 105
Query: 91 PEF 93
+
Sbjct: 106 EQM 108
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 33.1 bits (76), Expect = 0.006
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
L+ P C C ++
Sbjct: 32 EYTLLFINNPGCHACAEMIEGL 53
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 31.9 bits (72), Expect = 0.012
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 49 ESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
++ + + +A L KKET C +C++
Sbjct: 9 DNIKDLEVTTVVRAQEALDKKET--ATFFIGRKTCPYCRKFAGTL 51
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 32.1 bits (73), Expect = 0.017
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 70 ETRPVLIMFYAPWCGFCKQLKPEF 93
+ FY+P C C L P +
Sbjct: 113 SGELWFVNFYSPGCSHCHDLAPTW 136
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 31.6 bits (71), Expect = 0.021
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 27 ETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFC 86
+AF+ + D + DE+ QA+ ++ +++F P C +C
Sbjct: 102 HEFAAFLEDIVDVSREETNLMDETKQAIRNIDQD------------VRILVFVTPTCPYC 149
Query: 87 KQLKPEF 93
Sbjct: 150 PLAVRMA 156
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 31.2 bits (71), Expect = 0.028
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
++ F+ CG C+Q P+
Sbjct: 34 TILFFWDSQCGHCQQETPKL 53
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 31.1 bits (71), Expect = 0.029
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+P ++ F+ PWC FC P
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSL 46
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 31.2 bits (70), Expect = 0.036
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 61 QALNKLLKKE-TRPVLI--MFYAPWCGFCKQLKPEF 93
L +L +KE PV I A C C+ +
Sbjct: 9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELL 44
Score = 25.8 bits (56), Expect = 2.6
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 11 IKHYKDGEFNKNYE---RKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLL 67
I D ++ Y + +N + P +++ + + + P
Sbjct: 85 IVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPI------ 138
Query: 68 KKETRPVLIMFYAPWCGFCKQLKP 91
+ +F CG+C
Sbjct: 139 ------EIWVFVTTSCGYCPSAAV 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.052
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 6/51 (11%)
Query: 8 PYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLP 58
H + E S + +L D+P + + P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNP 327
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; 1.60A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 3ios_A
Length = 136
Score = 29.9 bits (68), Expect = 0.060
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+P ++ F+APWC C+
Sbjct: 26 KPAVLWFWAPWCPTCQG 42
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR
{Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 30.0 bits (68), Expect = 0.062
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+P LI F++ C CK+ P+
Sbjct: 30 KPTLIHFWSISCHLCKEAMPQV 51
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody,
allergy, IGE, conformational diversity,
multispecficity, redox-active center; 2.77A
{Escherichia coli} SCOP: c.47.1.1
Length = 123
Score = 29.4 bits (66), Expect = 0.098
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 14/37 (37%)
Query: 69 KETRPVLIMFYAPWCG--------------FCKQLKP 91
K +L+ F+A WCG CK + P
Sbjct: 19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAP 55
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.0 bits (66), Expect = 0.11
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
P L + M+ A WC C+ K F
Sbjct: 182 VPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELF 219
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 28.9 bits (64), Expect = 0.17
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ +A+ K ++ + + +F P C FCK+L+ EF
Sbjct: 1 MSLDKAI-KEVRGNGKLKVAVFSDPDCPFCKRLEHEF 36
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 28.8 bits (64), Expect = 0.20
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 59 TPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+L + E R L++ WC C+
Sbjct: 42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAAL 76
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 28.1 bits (63), Expect = 0.23
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 75 LIMFYAPWCGFCKQLKPEFL 94
+IM+ C +CK+ K + L
Sbjct: 24 VIMYGLSTCVWCKKTK-KLL 42
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 28.6 bits (64), Expect = 0.25
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
V++ F A WC C +
Sbjct: 38 DVVILWFMAAWCPSCVYMADLL 59
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 28.8 bits (64), Expect = 0.28
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ VLI F+A C C++ P
Sbjct: 83 KVVLIDFWAYSCINCQRAIPHV 104
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 28.4 bits (64), Expect = 0.30
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E K V FV++LK P+ +P
Sbjct: 13 EAKLEVREFVDYLKSPERFLQLGAKVP 39
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 28.0 bits (63), Expect = 0.35
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
R +L+ F+A WC + E
Sbjct: 34 RYLLLNFWASWCDPQPEANAEL 55
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase,
adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga
maritima}
Length = 192
Score = 28.3 bits (63), Expect = 0.38
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 10 VIKHYKDGEFNK-NYERKETVSA--FVNFLKDPKGDIPWEEDE-------SAQAVVHLPT 59
++K +++G ++ N R E++ ++L+D DI E E SA+ + +
Sbjct: 62 MLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDIS 121
Query: 60 PQALNKLLKKETRPVLIMF 78
+ +++ + +PVLI+
Sbjct: 122 FEEGRRIIIETEKPVLILL 140
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 27.7 bits (62), Expect = 0.54
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ VL+ F+ C +C++ P
Sbjct: 30 KYVLVDFWFAGCSWCRKETPYL 51
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 27.7 bits (61), Expect = 0.55
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 28 TVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCK 87
+ + + P G W+ E + ++ KK+ ++ +F P+C +CK
Sbjct: 64 SNTLIEKEIYAPAGREMWQRMEQSHWLL----------DGKKDAPVIVYVFADPFCPYCK 113
Query: 88 QLKPE 92
Q +
Sbjct: 114 QFWQQ 118
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 27.3 bits (61), Expect = 0.66
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ V++ F A WCG C++
Sbjct: 34 KVVMLQFTASWCGVCRK 50
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase;
1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A
2fy6_A
Length = 164
Score = 27.4 bits (61), Expect = 0.67
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+P LI F+A WC C +
Sbjct: 39 KPTLIKFWASWCPLCLSELGQA 60
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 27.1 bits (60), Expect = 0.72
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ V++ + C C
Sbjct: 31 KVVVVEVFQMLCPGCVN 47
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural
genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 27.0 bits (60), Expect = 0.77
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ ++I + C C
Sbjct: 29 KVIVIEAFQMLCPGCVM 45
>3gl3_A Putative thiol:disulfide interchange protein DSBE;
oxidoreductase, PSI-II, structural genomics, protein
structure initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 26.9 bits (60), Expect = 0.81
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
V + F+A WCG C+Q P
Sbjct: 29 SVVYLDFWASWCGPCRQSFPWM 50
>2l5o_A Putative thioredoxin; structural genomics, unknown function,
PSI-2, protein struct initiative; NMR {Neisseria
meningitidis serogroup B}
Length = 153
Score = 26.9 bits (60), Expect = 0.85
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ LI F+ P C C P+
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKI 50
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein;
HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10
PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A
3c71_A 3c73_A
Length = 151
Score = 26.8 bits (60), Expect = 1.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V + F+ WC CK+ P
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYM 48
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 26.5 bits (59), Expect = 1.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ ++ F+ WC CK+ P+F
Sbjct: 35 QKTILHFWTSWCPPCKKELPQF 56
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 26.6 bits (59), Expect = 1.1
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
R L+ F+A + + +
Sbjct: 33 RYTLLNFWAAYDAESRARNVQL 54
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 26.6 bits (59), Expect = 1.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
++ +A WCG C++ P
Sbjct: 25 PVRIVNLWATWCGPCRKEMPAM 46
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 26.5 bits (59), Expect = 1.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ + I +A WCG C+ P
Sbjct: 31 KYIYIDVWATWCGPCRGELPAL 52
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 26.8 bits (58), Expect = 1.2
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 31 AFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
F L + + P + + K + V+ +F C +C L
Sbjct: 46 LFEGKLYELTNNGPVDVAGKILVDKLNSYKDEMIVYPAKNEKHVVTVFMDITCHYCHLLH 105
Query: 91 PEF 93
+
Sbjct: 106 QQL 108
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure
initiative; 1.76A {Thermus thermophilus}
Length = 154
Score = 26.5 bits (59), Expect = 1.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 73 PVLIMFYAPWCGFCKQ 88
P +I+F+A WC CK
Sbjct: 32 PAVIVFWASWCTVCKA 47
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 26.6 bits (58), Expect = 1.6
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 54 VVHLPTPQALNKLLKKETR--PVLIMFYAPWCGFCKQLKPEF 93
V L + + + ++KE + +++ Y C L
Sbjct: 114 VYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSL 155
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 26.1 bits (58), Expect = 1.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ V++ F+A WC C++
Sbjct: 29 QVVIVNFWATWCPPCRE 45
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like,
NEW YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 26.2 bits (58), Expect = 1.7
Identities = 4/20 (20%), Positives = 4/20 (20%)
Query: 74 VLIMFYAPWCGFCKQLKPEF 93
VLI F
Sbjct: 38 VLIDFTVYNNAMSAAHNLAL 57
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 26.3 bits (57), Expect = 1.8
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 5 VNLPYVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALN 64
+N Y++K++KD N + ++ N D + SA+ V+ LP + +
Sbjct: 350 INPQYLVKYHKDVVENYFHVSGYSIGMLRNLSADEECFNAIRNKFSAEIVLRLPYLEQMQ 409
Query: 65 KLLK 68
+
Sbjct: 410 VVET 413
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 26.1 bits (58), Expect = 1.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ VL+ F+A WC +C+
Sbjct: 42 KIVLVNFWASWCPYCRD 58
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 25.7 bits (57), Expect = 1.9
Identities = 7/21 (33%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 70 ETRPVLIMFYAPWCGFCKQLK 90
+ PV++ F +CG+C ++K
Sbjct: 18 SSAPVVV-FSKTYCGYCNRVK 37
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative;
1.66A {Chlorobaculum tepidum}
Length = 165
Score = 25.8 bits (57), Expect = 2.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ ++ F+A WC C+ P+
Sbjct: 35 KAYIVNFFATWCPPCRSEIPDM 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 2.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 14/47 (29%)
Query: 3 VEV---NLP---YVIKHYKDGEFNKNYERKETVSAFVNFLKDPKGDI 43
VE+ N+ YV G+ +TV+ +NF+K K DI
Sbjct: 1841 VEIVNYNVENQQYVAA----GDL----RALDTVTNVLNFIKLQKIDI 1879
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 26.0 bits (58), Expect = 2.5
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E KE + V FLK+P IP
Sbjct: 38 EAKEELKEIVEFLKNPSRFHEMGARIP 64
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 25.7 bits (57), Expect = 2.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ V + F+A WC C
Sbjct: 23 KKVYLKFWASWCSICLA 39
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 25.4 bits (55), Expect = 2.6
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 55 VHLPTPQALNKLLKKETRPVLIMFYA--------PWCGFCKQLKPEF 93
V + + ++ +++ + ++ WC C Q +P
Sbjct: 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVV 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 26.0 bits (58), Expect = 2.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E E + V FLKDP +P
Sbjct: 23 EAIEELKEVVEFLKDPSKFNRIGARMP 49
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 25.4 bits (56), Expect = 2.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ +LI F+A W Q
Sbjct: 34 KSLLINFWASWNDSISQ 50
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 25.8 bits (57), Expect = 2.8
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E KE + V FLK+P IP
Sbjct: 47 EAKEELKEIVEFLKNPSRFHEMGARIP 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.9
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 61 QALNKL---LKK---ETRPVL 75
QAL KL LK ++ P L
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 25.5 bits (56), Expect = 2.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 74 VLIMFYAPWCGFCKQLKPE 92
+ F A WC C+ P
Sbjct: 29 IGFYFSAHWCPPCRGFTPI 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 25.4 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E KE V+ V +L++P G IP
Sbjct: 19 EAKEEVAELVEYLREPSRFQKLGGKIP 45
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 25.5 bits (56), Expect = 3.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 72 RPVLIMFYAPWCGFCKQLKPEF 93
+ V F A WC + P+
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQL 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 25.4 bits (56), Expect = 3.3
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E KE + V FLK+P IP
Sbjct: 23 EAKEELKEIVEFLKNPSRFHEMGARIP 49
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 25.3 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 24 ERKETVSAFVNFLKDPK------GDIP 44
E KE V V+FLK P+ IP
Sbjct: 18 EAKEEVVEIVDFLKYPERYANLGAKIP 44
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 25.5 bits (55), Expect = 3.5
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 56 HLPTPQALNKLLKKE-TRPVLIMFYAPWCGFCKQL 89
HL + A+++ + E R V I F + C ++
Sbjct: 25 HLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKM 59
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 25.0 bits (55), Expect = 3.9
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
+ + +L P+ I+F C + K +K
Sbjct: 5 KEYSLILD--LSPI-IIFSKSTCSYSKGMK 31
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila
melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A
2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 25.4 bits (55), Expect = 3.9
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 50 SAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ V L + K +++ ++ F + F
Sbjct: 14 TCTGCVDL-DELSFEKTVER-FPYSVVKFDIASP--YGEKHEAF 53
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQ 88
P +L + +PVL+ +A WC C+
Sbjct: 39 PGQFYQADVLTQG-KPVLLNVWATWCPTCRA 68
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 24.9 bits (55), Expect = 4.0
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
H A + ++ + +F C FC+
Sbjct: 2 HHHHQMAEEFVQQRLANNKVTIFVKYTCPFCRNAL 36
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 24.7 bits (54), Expect = 4.4
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 68 KKETRPVLIMFYAPWCGFCKQLK 90
PVL +F C C + K
Sbjct: 12 SNRALPVLTLFTKAPCPLCDEAK 34
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 25.0 bits (53), Expect = 4.4
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ L+ L+ + + +A CG C+ ++
Sbjct: 12 EVLSTSLENDGMAPVTEVFALSCGHCRNMENFL 44
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 24.7 bits (54), Expect = 5.2
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 72 RPVLIMFYAPWCGFCKQ 88
+ V++ + WC C+
Sbjct: 60 QVVILNAWGQWCAPCRS 76
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 25.0 bits (54), Expect = 5.4
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+ P + + ++ F+A C C ++P
Sbjct: 15 INPPMPSDT----PGKIEVLEFFAYTCPHCAAIEPMV 47
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 24.7 bits (53), Expect = 5.9
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPEF 93
+P + L K ++ + C C +
Sbjct: 14 IPDGRPFAPLAGK---IEVVEIFGYTCPHCAHFDSKL 47
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB:
1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 24.7 bits (54), Expect = 6.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 72 RPVLIMFYAPWCGFCKQLKPE 92
+ V F A WC + P+
Sbjct: 29 KLVFFYFSASWCPPARGFTPQ 49
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 24.8 bits (53), Expect = 6.5
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 57 LPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLKPE 92
L P + + ++ F+ +C C P
Sbjct: 12 LDKPIPQEQ----SGKIEVLEFFGYFCVHCHHFDPL 43
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 24.4 bits (53), Expect = 6.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 74 VLIMFYAPWCGFCKQLKPE 92
V F A WC C+ P+
Sbjct: 51 VFFYFSASWCPPCRGFTPQ 69
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 24.3 bits (53), Expect = 7.1
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 39 PKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
G +P +Q V + L+ + + V + +C +CK
Sbjct: 11 SSGLVPRGSHMVSQETV-----AHVKDLIGQ--KEV-FVAAKTYCPYCKATL 54
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm,
electron transport, redox-active center, transport;
HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A*
2jac_A*
Length = 118
Score = 24.2 bits (53), Expect = 7.2
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 56 HLPTPQALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
H+ + + + + + + +C +C
Sbjct: 8 HMVSQETIKHVKDLIAENEIFVASKTYCPYCHAAL 42
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 24.1 bits (53), Expect = 7.8
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 61 QALNKLLKKETRPVLIMFYAPWCGFCKQLK 90
+N ++ V ++F P C FC++ +
Sbjct: 3 AFVNSKIQP--GKV-VVFIKPTCPFCRKTQ 29
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like,
thiol-disulfide exchange, cell inner membrane, CYT
C-type biogenesis, disulfide bond; 1.75A {Pseudomonas
aeruginosa} PDB: 3kh9_A
Length = 176
Score = 24.2 bits (53), Expect = 7.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 58 PTPQALNKLLKKETRPVLIMFYAPWCGFCKQ 88
P + LK + P L+ + WC C+
Sbjct: 47 PARRLTEADLKGK--PALVNVWGTWCPSCRV 75
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 23.3 bits (51), Expect = 8.6
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 76 IMFYAPWCGFCKQLK 90
++ P C C K
Sbjct: 4 TLYTKPACVQCTATK 18
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 24.0 bits (51), Expect = 9.7
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 12/65 (18%)
Query: 27 ETVSAFVNFLKDPKGDIPWEEDESAQAVVHLPTPQALNKLLKKETRPVLIMFYAPWCGFC 86
E + A V + D ED + +A+ L + P C +C
Sbjct: 106 EEIRALVEVIMRLSEDESGLEDATKEALKSLKGR------------VHIETIITPSCPYC 153
Query: 87 KQLKP 91
Sbjct: 154 PYAVL 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.431
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,549,443
Number of extensions: 78507
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 209
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)