BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3445
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116
+V +TG TGF+G+ LV +LLR + + LVR + + + RLE F+
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFD 124
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 3 LDLHKKALSSTK---YKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPI 59
+D HK L++T+ Y KP+ T ++ Y+KD + L+G G+ +++ D G +
Sbjct: 86 IDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIG----GKKKELKPDLAGLLL 141
Query: 60 QEFFRDASVFVTGGTGFMGKILVEKL 85
D +F + T + K + +KL
Sbjct: 142 SAIISDTVLFKSPTTTDLDKEMAKKL 167
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
+ +TG TG +G ++E L++ +P + + ++ P K +A+ +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQ 44
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 60 QEFFRDASVFVTGGTGFMGKILVEKLL 86
Q + ++ +TGGTG GK V K+L
Sbjct: 16 QNMLDNQTILITGGTGSFGKCFVRKVL 42
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRI 119
++ VTGG GF+G V + P + H+ +L + + LEAI DR+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYA-GNKANLEAILGDRV 56
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
S+ VTG TG +G ++++ LL+ +P + I ++ +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQ 45
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
S+ VTG TG +G ++++ LL+ +P + I ++ +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQ 45
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
V VTGGTGF+G +++ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 68 VFVTGGTGFMGKILVEKL 85
+ VTGGTGF+G+ +VE +
Sbjct: 5 IAVTGGTGFLGQYVVESI 22
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
S+ VTG TG +G ++++ L A+P + I ++ +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEKASTLADQ 45
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 19 PLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
P E+ +D V +++Y+ P L+G+ +G+ + IG + E F +F
Sbjct: 177 PGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWA--IGCLVTEMFMGEPLF 225
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
S+ VTG TG +G ++++ L A+P + I ++ +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEKASTLADQ 45
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
V VTGG GF+G +VE LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLL 21
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 94 HIYLLVRPK-KGKAVQERLEAIFEDR 118
HI LLV +G+A Q+RLE + E+R
Sbjct: 142 HIILLVSDDHEGRAAQKRLETLLEER 167
>pdb|3GO5|A Chain A, Crystal Structure Of A Multidomain Protein With Nucleic
Acid Binding Domains (Sp_0946) From Streptococcus
Pneumoniae Tigr4 At 1.40 A Resolution
Length = 285
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 52 KDEIGTP-IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
+D+ G + E +D VFV TG K +V L +P LK ++ PKKG + R
Sbjct: 69 QDQFGWGRVTEVRKDLGVFVD--TGLPDKEIVVSL-DILPELKELW----PKKGDQLYIR 121
Query: 111 LEAIFEDRIH 120
LE +DRI
Sbjct: 122 LEVDKKDRIW 131
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKH-IYLLVRPK 102
+ V + GGTG++GK +++ A L H Y+L RP+
Sbjct: 5 SRVLIVGGTGYIGK----RIVNASISLGHPTYVLFRPE 38
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 65 DASVFVTGGTGFMGKILVEKLL 86
+ +V V GG GF+G LV++LL
Sbjct: 32 NTNVMVVGGAGFVGSNLVKRLL 53
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
+ +TGG GF+G L +KL+
Sbjct: 8 ILITGGAGFVGSHLTDKLM 26
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 25/91 (27%)
Query: 30 KYYKDP-LQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILV------ 82
K+YK P + +LG N G I F A F T G G LV
Sbjct: 123 KHYKQPDVLILGXGNDGHTASI------------FPKAPQFQTAIDGSAGVALVHTTPVT 170
Query: 83 ------EKLLRAIPHLKHIYLLVRPKKGKAV 107
L AI H H++L ++ ++ KAV
Sbjct: 171 APHERISXTLDAIAHTGHVFLAIQGEEKKAV 201
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
Length = 313
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 68 VFVTGGTGFMGKILVEKL 85
+ VTGG GF+G +V+KL
Sbjct: 4 IVVTGGAGFIGSHVVDKL 21
>pdb|3AKF|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
pdb|3AKG|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-1,5-L-Arabinofuranobiose
pdb|3AKH|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-1,5-L-Arabinofuranotriose
pdb|3AKI|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-L-Arabinofuranosyl Azido
Length = 468
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 52 KDEIGTPIQEFFRDASVFVTGG 73
K +I TP+ F DA+ FV G
Sbjct: 123 KGQIATPVSSFSLDATTFVVNG 144
>pdb|1UBH|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBJ|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBK|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBL|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBM|L Chain L, Three-dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBO|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBR|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBT|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
pdb|1UBU|L Chain L, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
Length = 534
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
TK V + I + +V + YKD Q G NF + PKDE FF+ VF
Sbjct: 247 TKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLN-SRFFKPGVVF 302
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 567
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
TK V + I + +V + YKD Q G NF + PKDE FF+ VF
Sbjct: 265 TKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLN-SRFFKPGVVF 320
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
TK V + I + +V + YKD Q G NF + PKDE FF+ VF
Sbjct: 247 TKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLN-SRFFKPGVVF 302
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 41 EKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTG 75
E+ F +KIP+ E T + + RD V++ GT
Sbjct: 54 EEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTA 88
>pdb|1WUJ|L Chain L, Three-Dimensional Structure Of The Ni-B State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUK|L Chain L, High Resolution Structure Of The Oxidized State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUL|L Chain L, High Resolution Structure Of The Reduced State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
TK V + I + +V + YKD Q G NF + PKDE FF+ VF
Sbjct: 247 TKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLN-SRFFKPGVVF 302
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 23 TEDIVNSK------YYKDPLQLLG--EKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGT 74
T+D++N+K +Y L+G E F +P I ++ I P+ RD GT
Sbjct: 12 TDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAI--PVAITGRDILARAKNGT 69
Query: 75 GFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQ 108
G ++ L + P L I L+ P + A+Q
Sbjct: 70 GKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQ 104
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
++ +TG GF+GK L L H HI+ + R K + ++ L
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDH--HIFEVHRQTKEEELESAL 44
>pdb|1WUH|L Chain L, Three-Dimensional Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
pdb|1WUI|L Chain L, Ultra-High Resolution Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 534
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVF 69
TK V + I + +V + YKD Q G NF + PKDE FF+ VF
Sbjct: 247 TKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLN-SRFFKPGVVF 302
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
++ +TG GF+GK L L H HI+ + R K + ++ L
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDH--HIFEVHRQTKEEELESAL 44
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 68 VFVTGGTGFMGKILVEKL 85
+ +TGG GF+G L +KL
Sbjct: 30 ILITGGAGFVGSHLTDKL 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,741,826
Number of Sequences: 62578
Number of extensions: 161287
Number of successful extensions: 469
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 42
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)