Query psy3445
Match_columns 121
No_of_seqs 228 out of 1410
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:52:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1086 Predicted nucleoside-d 99.5 2.4E-14 5.1E-19 123.4 8.4 83 12-104 202-287 (588)
2 PLN02996 fatty acyl-CoA reduct 99.3 1.1E-11 2.5E-16 105.1 7.2 63 57-119 3-66 (491)
3 PLN02503 fatty acyl-CoA reduct 99.2 4.9E-11 1.1E-15 104.0 7.7 65 55-119 109-174 (605)
4 KOG1221|consensus 99.2 3.2E-11 6.9E-16 102.4 6.3 63 58-120 5-67 (467)
5 KOG1502|consensus 98.7 1.8E-08 3.8E-13 82.6 5.9 39 64-105 5-43 (327)
6 PF07993 NAD_binding_4: Male s 98.7 1.7E-08 3.7E-13 77.7 4.7 45 70-115 1-45 (249)
7 COG3320 Putative dehydrogenase 98.5 1.4E-07 2.9E-12 78.6 5.6 49 66-116 1-49 (382)
8 PRK15181 Vi polysaccharide bio 98.4 3.5E-07 7.6E-12 73.5 5.5 37 63-102 13-49 (348)
9 TIGR02622 CDP_4_6_dhtase CDP-g 98.4 4.2E-07 9.1E-12 72.7 5.6 40 62-104 1-40 (349)
10 PRK14982 acyl-ACP reductase; P 98.4 2.5E-07 5.4E-12 76.2 4.3 81 12-103 90-192 (340)
11 PLN02662 cinnamyl-alcohol dehy 98.4 4E-07 8.8E-12 71.2 5.2 38 64-104 3-40 (322)
12 TIGR01746 Thioester-redct thio 98.4 5.8E-07 1.3E-11 70.4 5.6 46 67-113 1-46 (367)
13 PLN00198 anthocyanidin reducta 98.3 9.5E-07 2.1E-11 70.2 5.4 38 63-103 7-44 (338)
14 CHL00194 ycf39 Ycf39; Provisio 98.3 8.8E-07 1.9E-11 70.2 5.1 35 66-103 1-35 (317)
15 PLN02986 cinnamyl-alcohol dehy 98.3 1.3E-06 2.8E-11 68.8 5.7 38 64-104 4-41 (322)
16 PRK08125 bifunctional UDP-gluc 98.3 2.1E-06 4.6E-11 75.0 7.4 46 55-103 305-351 (660)
17 PLN02206 UDP-glucuronate decar 98.3 1.4E-06 3E-11 73.3 6.0 37 63-102 117-153 (442)
18 PLN02427 UDP-apiose/xylose syn 98.3 1E-06 2.2E-11 71.5 5.0 36 64-102 13-49 (386)
19 PLN02583 cinnamoyl-CoA reducta 98.3 1.7E-06 3.8E-11 68.1 6.2 35 65-102 6-40 (297)
20 TIGR01472 gmd GDP-mannose 4,6- 98.3 1.2E-06 2.5E-11 69.9 5.2 35 66-103 1-35 (343)
21 PLN02650 dihydroflavonol-4-red 98.3 1.3E-06 2.8E-11 69.8 5.1 38 64-104 4-41 (351)
22 PLN02653 GDP-mannose 4,6-dehyd 98.2 1.7E-06 3.7E-11 68.8 5.1 37 63-102 4-40 (340)
23 PLN02572 UDP-sulfoquinovose sy 98.2 1.5E-06 3.2E-11 72.9 5.0 39 59-100 41-79 (442)
24 PLN02166 dTDP-glucose 4,6-dehy 98.2 1.9E-06 4.1E-11 72.3 5.3 36 64-102 119-154 (436)
25 PLN02214 cinnamoyl-CoA reducta 98.2 2.1E-06 4.5E-11 69.1 5.3 38 63-103 8-45 (342)
26 COG0451 WcaG Nucleoside-diphos 98.2 2.3E-06 5.1E-11 66.0 5.2 35 67-104 2-36 (314)
27 PLN02695 GDP-D-mannose-3',5'-e 98.2 3.3E-06 7.2E-11 68.8 5.3 36 64-102 20-55 (370)
28 PLN02989 cinnamyl-alcohol dehy 98.1 3.9E-06 8.4E-11 66.1 5.4 38 64-104 4-41 (325)
29 PF13460 NAD_binding_10: NADH( 98.1 3.6E-06 7.7E-11 60.9 4.7 34 68-104 1-34 (183)
30 PLN02896 cinnamyl-alcohol dehy 98.1 3.9E-06 8.4E-11 67.3 5.4 36 64-102 9-44 (353)
31 PF01370 Epimerase: NAD depend 98.1 6.1E-06 1.3E-10 61.2 6.0 35 68-105 1-35 (236)
32 TIGR01777 yfcH conserved hypot 98.1 3E-06 6.5E-11 64.9 4.4 34 68-104 1-34 (292)
33 KOG1429|consensus 98.1 3.7E-06 8.1E-11 68.6 4.9 38 64-104 26-63 (350)
34 PRK11908 NAD-dependent epimera 98.1 3.8E-06 8.2E-11 67.1 4.9 34 66-102 2-36 (347)
35 TIGR01214 rmlD dTDP-4-dehydror 98.1 8.2E-06 1.8E-10 62.8 6.2 47 67-116 1-47 (287)
36 PLN00141 Tic62-NAD(P)-related 98.1 4.4E-06 9.6E-11 64.0 4.7 42 59-103 11-52 (251)
37 PF02719 Polysacc_synt_2: Poly 98.1 3.4E-06 7.5E-11 68.3 4.2 35 68-104 1-35 (293)
38 PLN02686 cinnamoyl-CoA reducta 98.1 5.2E-06 1.1E-10 67.6 5.1 38 62-102 50-87 (367)
39 COG0702 Predicted nucleoside-d 98.1 4E-06 8.7E-11 63.5 4.1 36 66-104 1-36 (275)
40 TIGR03589 PseB UDP-N-acetylglu 98.1 6E-06 1.3E-10 65.9 5.2 40 63-103 2-41 (324)
41 PLN02240 UDP-glucose 4-epimera 98.1 7.5E-06 1.6E-10 64.9 5.6 37 63-102 3-39 (352)
42 PRK07231 fabG 3-ketoacyl-(acyl 98.1 9.9E-06 2.1E-10 60.7 5.9 39 63-104 3-41 (251)
43 PRK12826 3-ketoacyl-(acyl-carr 98.1 8.6E-06 1.9E-10 60.9 5.4 38 63-103 4-41 (251)
44 PRK12429 3-hydroxybutyrate deh 98.0 1.1E-05 2.3E-10 60.8 5.9 39 63-104 2-40 (258)
45 PRK09987 dTDP-4-dehydrorhamnos 98.0 1.1E-05 2.3E-10 63.7 6.1 32 66-101 1-32 (299)
46 PLN02260 probable rhamnose bio 98.0 7.2E-06 1.6E-10 71.4 5.4 40 61-101 2-41 (668)
47 TIGR03649 ergot_EASG ergot alk 98.0 6.7E-06 1.5E-10 63.7 4.6 35 67-104 1-35 (285)
48 PRK12828 short chain dehydroge 98.0 1.3E-05 2.9E-10 59.3 6.1 38 63-103 5-42 (239)
49 PRK07806 short chain dehydroge 98.0 1.7E-05 3.6E-10 59.8 6.6 37 63-102 4-40 (248)
50 PLN02778 3,5-epimerase/4-reduc 98.0 1.9E-05 4.2E-10 62.6 7.1 33 65-100 9-41 (298)
51 PRK06194 hypothetical protein; 98.0 1.5E-05 3.3E-10 61.4 6.1 38 63-103 4-41 (287)
52 PRK13394 3-hydroxybutyrate deh 98.0 1.6E-05 3.5E-10 60.0 6.1 38 63-103 5-42 (262)
53 PLN02657 3,8-divinyl protochlo 98.0 9.4E-06 2E-10 66.9 5.2 39 62-103 57-95 (390)
54 PRK09135 pteridine reductase; 98.0 1.2E-05 2.6E-10 60.0 5.2 36 64-102 5-40 (249)
55 PRK11150 rfaD ADP-L-glycero-D- 98.0 9.6E-06 2.1E-10 63.4 4.7 31 68-101 2-32 (308)
56 PRK07890 short chain dehydroge 98.0 1.6E-05 3.5E-10 60.0 5.6 39 62-103 2-40 (258)
57 COG1090 Predicted nucleoside-d 98.0 8.5E-06 1.8E-10 65.9 4.1 35 68-105 1-35 (297)
58 PRK09186 flagellin modificatio 98.0 2E-05 4.4E-10 59.4 6.1 38 63-103 2-39 (256)
59 TIGR03206 benzo_BadH 2-hydroxy 97.9 1.6E-05 3.4E-10 59.7 5.2 38 63-103 1-38 (250)
60 PRK05653 fabG 3-ketoacyl-(acyl 97.9 1.5E-05 3.4E-10 59.1 4.9 38 63-103 3-40 (246)
61 TIGR03466 HpnA hopanoid-associ 97.9 1.5E-05 3.3E-10 62.0 4.9 35 66-103 1-35 (328)
62 PRK05557 fabG 3-ketoacyl-(acyl 97.9 1.9E-05 4.2E-10 58.7 5.3 38 63-103 3-40 (248)
63 PRK12823 benD 1,6-dihydroxycyc 97.9 2E-05 4.3E-10 59.8 5.4 38 62-102 5-42 (260)
64 PRK07774 short chain dehydroge 97.9 2.1E-05 4.6E-10 59.1 5.4 38 63-103 4-41 (250)
65 PRK12829 short chain dehydroge 97.9 1.8E-05 3.8E-10 59.9 5.0 40 61-103 7-46 (264)
66 PRK05717 oxidoreductase; Valid 97.9 1.8E-05 3.8E-10 60.2 5.0 38 62-102 7-44 (255)
67 TIGR01832 kduD 2-deoxy-D-gluco 97.9 1.9E-05 4.1E-10 59.5 5.0 37 63-102 3-39 (248)
68 PRK10675 UDP-galactose-4-epime 97.9 2.1E-05 4.7E-10 62.0 5.4 33 66-101 1-33 (338)
69 PRK08703 short chain dehydroge 97.9 3.3E-05 7.1E-10 58.1 6.0 38 63-103 4-41 (239)
70 PRK08945 putative oxoacyl-(acy 97.9 2.7E-05 5.7E-10 58.9 5.5 39 61-102 8-46 (247)
71 PRK07326 short chain dehydroge 97.9 2.9E-05 6.2E-10 58.0 5.5 37 63-102 4-40 (237)
72 PRK07201 short chain dehydroge 97.9 1.7E-05 3.6E-10 68.2 4.8 34 66-102 1-36 (657)
73 PRK06138 short chain dehydroge 97.9 3E-05 6.5E-10 58.2 5.6 38 63-103 3-40 (252)
74 PRK06196 oxidoreductase; Provi 97.9 2.7E-05 6E-10 61.5 5.6 38 63-103 24-61 (315)
75 PRK06057 short chain dehydroge 97.9 2.5E-05 5.3E-10 59.4 5.2 39 62-103 4-42 (255)
76 PRK07523 gluconate 5-dehydroge 97.9 2.6E-05 5.7E-10 59.1 5.3 38 63-103 8-45 (255)
77 PRK12825 fabG 3-ketoacyl-(acyl 97.9 4.3E-05 9.3E-10 56.7 6.3 37 63-102 4-40 (249)
78 COG1087 GalE UDP-glucose 4-epi 97.9 1.7E-05 3.8E-10 64.8 4.4 33 66-101 1-33 (329)
79 PRK06197 short chain dehydroge 97.9 2.6E-05 5.6E-10 61.2 5.3 38 63-103 14-51 (306)
80 PLN00016 RNA-binding protein; 97.9 1.9E-05 4.2E-10 64.2 4.6 37 64-103 51-91 (378)
81 PF01073 3Beta_HSD: 3-beta hyd 97.9 1.6E-05 3.5E-10 63.0 3.9 35 69-104 1-35 (280)
82 PRK08628 short chain dehydroge 97.8 3.8E-05 8.2E-10 58.3 5.6 39 63-104 5-43 (258)
83 PRK10217 dTDP-glucose 4,6-dehy 97.8 3E-05 6.5E-10 61.8 5.3 34 66-101 2-35 (355)
84 TIGR01963 PHB_DH 3-hydroxybuty 97.8 3E-05 6.4E-10 58.3 5.0 36 65-103 1-36 (255)
85 PRK12827 short chain dehydroge 97.8 5.5E-05 1.2E-09 56.5 6.4 36 63-101 4-39 (249)
86 PRK05875 short chain dehydroge 97.8 3.9E-05 8.4E-10 58.9 5.7 38 63-103 5-42 (276)
87 PRK07035 short chain dehydroge 97.8 4.2E-05 9.2E-10 57.8 5.7 38 63-103 6-43 (252)
88 PRK06914 short chain dehydroge 97.8 2.9E-05 6.4E-10 59.7 4.9 38 64-104 2-39 (280)
89 PRK06949 short chain dehydroge 97.8 4.1E-05 8.9E-10 57.8 5.4 38 63-103 7-44 (258)
90 PRK06523 short chain dehydroge 97.8 3.3E-05 7.1E-10 58.7 4.8 38 62-102 6-43 (260)
91 PRK06500 short chain dehydroge 97.8 3.8E-05 8.2E-10 57.6 5.1 37 63-102 4-40 (249)
92 PRK07577 short chain dehydroge 97.8 4.6E-05 1E-09 56.8 5.5 37 64-103 2-38 (234)
93 PRK08213 gluconate 5-dehydroge 97.8 4.2E-05 9.1E-10 58.2 5.3 37 63-102 10-46 (259)
94 PRK06172 short chain dehydroge 97.8 5.2E-05 1.1E-09 57.3 5.8 38 63-103 5-42 (253)
95 PRK08264 short chain dehydroge 97.8 3.8E-05 8.1E-10 57.5 4.9 39 63-103 4-42 (238)
96 PRK07814 short chain dehydroge 97.8 4.3E-05 9.3E-10 58.6 5.3 37 63-102 8-44 (263)
97 PRK10084 dTDP-glucose 4,6 dehy 97.8 3.2E-05 7E-10 61.5 4.8 33 66-100 1-33 (352)
98 PRK05786 fabG 3-ketoacyl-(acyl 97.8 4.5E-05 9.8E-10 56.9 5.3 38 63-103 3-40 (238)
99 PRK07666 fabG 3-ketoacyl-(acyl 97.8 5.6E-05 1.2E-09 56.7 5.7 38 63-103 5-42 (239)
100 PRK12320 hypothetical protein; 97.8 3.4E-05 7.5E-10 68.8 5.1 34 66-102 1-34 (699)
101 PRK05854 short chain dehydroge 97.8 5.4E-05 1.2E-09 60.2 5.7 38 63-103 12-49 (313)
102 PRK08278 short chain dehydroge 97.8 5E-05 1.1E-09 58.8 5.5 38 63-103 4-41 (273)
103 PRK06180 short chain dehydroge 97.8 4.7E-05 1E-09 58.9 5.3 37 64-103 3-39 (277)
104 PRK12939 short chain dehydroge 97.8 6.6E-05 1.4E-09 56.2 5.9 38 63-103 5-42 (250)
105 PRK07063 short chain dehydroge 97.8 6.8E-05 1.5E-09 57.0 5.9 38 63-103 5-42 (260)
106 PRK07067 sorbitol dehydrogenas 97.8 5E-05 1.1E-09 57.7 5.2 38 63-103 4-41 (257)
107 PRK09291 short chain dehydroge 97.8 5.3E-05 1.2E-09 57.2 5.3 35 65-102 2-36 (257)
108 PRK06482 short chain dehydroge 97.8 5.2E-05 1.1E-09 58.3 5.3 35 65-102 2-36 (276)
109 PRK06935 2-deoxy-D-gluconate 3 97.8 6.4E-05 1.4E-09 57.2 5.7 36 63-101 13-48 (258)
110 PRK05867 short chain dehydroge 97.8 6.4E-05 1.4E-09 57.0 5.7 38 63-103 7-44 (253)
111 PRK06841 short chain dehydroge 97.8 5.6E-05 1.2E-09 57.1 5.3 38 63-103 13-50 (255)
112 PRK06179 short chain dehydroge 97.8 5E-05 1.1E-09 58.0 5.1 37 64-103 3-39 (270)
113 PRK07856 short chain dehydroge 97.7 4.9E-05 1.1E-09 57.7 5.0 37 63-102 4-40 (252)
114 PRK06077 fabG 3-ketoacyl-(acyl 97.7 5.8E-05 1.3E-09 56.7 5.2 36 63-101 4-39 (252)
115 TIGR03325 BphB_TodD cis-2,3-di 97.7 5.8E-05 1.3E-09 57.7 5.3 37 63-102 3-39 (262)
116 PRK12746 short chain dehydroge 97.7 5.5E-05 1.2E-09 57.1 5.1 37 63-102 4-41 (254)
117 PRK09072 short chain dehydroge 97.7 6.2E-05 1.3E-09 57.5 5.3 37 63-102 3-39 (263)
118 PF04321 RmlD_sub_bind: RmlD s 97.7 4E-05 8.6E-10 60.6 4.4 48 66-116 1-48 (286)
119 PRK07478 short chain dehydroge 97.7 7.7E-05 1.7E-09 56.5 5.8 38 63-103 4-41 (254)
120 PRK08219 short chain dehydroge 97.7 5.5E-05 1.2E-09 55.9 4.9 35 65-103 3-37 (227)
121 PRK12745 3-ketoacyl-(acyl-carr 97.7 6.1E-05 1.3E-09 56.8 5.2 35 65-102 2-36 (256)
122 PRK08263 short chain dehydroge 97.7 6.4E-05 1.4E-09 58.0 5.4 37 64-103 2-38 (275)
123 PRK08226 short chain dehydroge 97.7 6.2E-05 1.4E-09 57.2 5.3 37 63-102 4-40 (263)
124 PRK06398 aldose dehydrogenase; 97.7 6.9E-05 1.5E-09 57.4 5.5 38 63-103 4-41 (258)
125 PRK08220 2,3-dihydroxybenzoate 97.7 6.5E-05 1.4E-09 56.5 5.2 37 63-102 6-42 (252)
126 PRK06182 short chain dehydroge 97.7 6.6E-05 1.4E-09 57.7 5.3 37 64-103 2-38 (273)
127 PRK07453 protochlorophyllide o 97.7 6.8E-05 1.5E-09 59.3 5.5 37 64-103 5-41 (322)
128 PRK05876 short chain dehydroge 97.7 7.9E-05 1.7E-09 58.0 5.6 37 63-102 4-40 (275)
129 TIGR02197 heptose_epim ADP-L-g 97.7 4.6E-05 9.9E-10 59.2 4.3 33 68-102 1-33 (314)
130 PRK08085 gluconate 5-dehydroge 97.7 9.1E-05 2E-09 56.2 5.8 38 63-103 7-44 (254)
131 PRK05866 short chain dehydroge 97.7 7.8E-05 1.7E-09 58.8 5.6 38 62-102 37-74 (293)
132 PRK07102 short chain dehydroge 97.7 7.2E-05 1.6E-09 56.3 5.1 35 66-103 2-36 (243)
133 PRK07062 short chain dehydroge 97.7 0.0001 2.3E-09 56.2 6.1 38 63-103 6-43 (265)
134 PRK08643 acetoin reductase; Va 97.7 0.00012 2.5E-09 55.5 6.0 36 65-103 2-37 (256)
135 TIGR03443 alpha_am_amid L-amin 97.7 8.2E-05 1.8E-09 69.0 6.2 48 65-112 971-1019(1389)
136 PLN03209 translocon at the inn 97.7 6.7E-05 1.5E-09 65.7 5.3 41 61-104 76-116 (576)
137 PRK06114 short chain dehydroge 97.7 0.00018 3.8E-09 54.8 6.9 38 63-103 6-43 (254)
138 PRK06128 oxidoreductase; Provi 97.7 0.00013 2.8E-09 57.3 6.3 38 62-102 52-89 (300)
139 PLN02725 GDP-4-keto-6-deoxyman 97.7 6.3E-05 1.4E-09 58.1 4.5 23 69-91 1-23 (306)
140 PLN02253 xanthoxin dehydrogena 97.7 9.1E-05 2E-09 57.0 5.3 38 62-102 15-52 (280)
141 PRK06701 short chain dehydroge 97.7 0.00016 3.5E-09 56.8 6.8 39 61-102 42-80 (290)
142 PRK08589 short chain dehydroge 97.7 8.7E-05 1.9E-09 57.3 5.2 36 63-101 4-39 (272)
143 PRK07825 short chain dehydroge 97.7 9.5E-05 2.1E-09 56.7 5.3 38 63-103 3-40 (273)
144 PRK08265 short chain dehydroge 97.7 0.00013 2.7E-09 56.0 6.0 38 63-103 4-41 (261)
145 PRK05565 fabG 3-ketoacyl-(acyl 97.6 9.1E-05 2E-09 55.2 5.0 37 63-102 3-40 (247)
146 PRK07023 short chain dehydroge 97.6 8.7E-05 1.9E-09 55.9 5.0 35 66-103 2-36 (243)
147 PRK10538 malonic semialdehyde 97.6 8.5E-05 1.8E-09 56.3 4.9 35 66-103 1-35 (248)
148 PRK07060 short chain dehydroge 97.6 0.0001 2.2E-09 55.1 5.3 37 63-102 7-43 (245)
149 PRK07074 short chain dehydroge 97.6 0.0001 2.2E-09 55.8 5.3 36 65-103 2-37 (257)
150 TIGR01181 dTDP_gluc_dehyt dTDP 97.6 6.9E-05 1.5E-09 57.7 4.4 34 67-101 1-34 (317)
151 PRK08277 D-mannonate oxidoredu 97.6 0.00013 2.7E-09 56.2 5.8 37 63-102 8-44 (278)
152 PRK06200 2,3-dihydroxy-2,3-dih 97.6 0.00011 2.3E-09 56.2 5.4 38 63-103 4-41 (263)
153 PRK06171 sorbitol-6-phosphate 97.6 0.00012 2.5E-09 55.9 5.5 38 62-102 6-43 (266)
154 PRK06550 fabG 3-ketoacyl-(acyl 97.6 0.00011 2.4E-09 54.9 5.2 37 63-102 3-39 (235)
155 PRK06124 gluconate 5-dehydroge 97.6 0.00011 2.5E-09 55.5 5.4 37 63-102 9-45 (256)
156 PRK12367 short chain dehydroge 97.6 0.00013 2.8E-09 56.5 5.7 39 61-102 10-48 (245)
157 PRK06101 short chain dehydroge 97.6 0.00011 2.4E-09 55.6 5.2 34 66-102 2-35 (240)
158 PRK12936 3-ketoacyl-(acyl-carr 97.6 0.00011 2.5E-09 54.7 5.2 37 63-102 4-40 (245)
159 PRK08251 short chain dehydroge 97.6 0.00012 2.6E-09 55.1 5.4 36 65-103 2-37 (248)
160 PRK08063 enoyl-(acyl carrier p 97.6 0.00011 2.4E-09 55.2 5.1 37 63-102 2-39 (250)
161 PRK08177 short chain dehydroge 97.6 0.00012 2.6E-09 54.8 5.3 36 66-104 2-37 (225)
162 PRK12742 oxidoreductase; Provi 97.6 0.00011 2.4E-09 54.7 5.1 36 63-101 4-39 (237)
163 PRK09242 tropinone reductase; 97.6 0.00014 3.1E-09 55.2 5.7 37 63-102 7-43 (257)
164 PRK08642 fabG 3-ketoacyl-(acyl 97.6 0.00012 2.5E-09 55.1 5.2 35 63-100 3-37 (253)
165 PRK08267 short chain dehydroge 97.6 9.2E-05 2E-09 56.3 4.6 35 66-103 2-36 (260)
166 PRK12937 short chain dehydroge 97.6 0.00012 2.6E-09 54.7 5.1 36 63-101 3-38 (245)
167 PRK07775 short chain dehydroge 97.6 0.00013 2.8E-09 56.4 5.4 37 63-102 8-44 (274)
168 PRK08017 oxidoreductase; Provi 97.6 0.00013 2.8E-09 55.0 5.2 35 66-103 3-37 (256)
169 PRK05993 short chain dehydroge 97.6 0.00013 2.9E-09 56.4 5.4 37 64-103 3-39 (277)
170 PRK06924 short chain dehydroge 97.6 0.00013 2.8E-09 55.0 5.1 34 66-102 2-35 (251)
171 PRK07454 short chain dehydroge 97.6 0.00014 3E-09 54.6 5.3 37 64-103 5-41 (241)
172 PRK09134 short chain dehydroge 97.6 0.00013 2.8E-09 55.6 5.1 35 64-101 8-42 (258)
173 PRK07576 short chain dehydroge 97.6 0.00014 3E-09 55.9 5.4 38 63-103 7-44 (264)
174 PRK12747 short chain dehydroge 97.6 0.00013 2.9E-09 55.2 5.2 35 63-100 2-36 (252)
175 PRK12384 sorbitol-6-phosphate 97.6 0.00014 3.1E-09 55.1 5.3 36 65-103 2-37 (259)
176 PRK06181 short chain dehydroge 97.6 0.00014 3E-09 55.3 5.2 35 65-102 1-35 (263)
177 PRK07024 short chain dehydroge 97.6 0.00015 3.2E-09 55.3 5.3 35 65-102 2-36 (257)
178 PRK06113 7-alpha-hydroxysteroi 97.6 0.00015 3.3E-09 55.1 5.3 37 63-102 9-45 (255)
179 PRK07904 short chain dehydroge 97.6 0.00016 3.4E-09 55.6 5.4 39 63-103 6-44 (253)
180 COG2910 Putative NADH-flavin r 97.6 6.4E-05 1.4E-09 58.0 3.2 39 66-107 1-39 (211)
181 PRK12935 acetoacetyl-CoA reduc 97.5 0.00027 5.8E-09 53.1 6.4 35 63-100 4-38 (247)
182 PRK05650 short chain dehydroge 97.5 0.00019 4.2E-09 55.0 5.7 35 66-103 1-35 (270)
183 PRK07985 oxidoreductase; Provi 97.5 0.00026 5.5E-09 55.8 6.5 37 63-102 47-83 (294)
184 PRK07097 gluconate 5-dehydroge 97.5 0.00022 4.8E-09 54.6 5.9 38 63-103 8-45 (265)
185 PRK08339 short chain dehydroge 97.5 0.00018 3.9E-09 55.5 5.5 38 63-103 6-43 (263)
186 PRK12744 short chain dehydroge 97.5 0.00026 5.5E-09 53.9 6.2 36 63-101 6-41 (257)
187 PRK05693 short chain dehydroge 97.5 0.00016 3.4E-09 55.6 5.1 34 66-102 2-35 (274)
188 PRK06198 short chain dehydroge 97.5 0.00019 4E-09 54.4 5.4 40 62-103 3-42 (260)
189 PRK08936 glucose-1-dehydrogena 97.5 0.00033 7.1E-09 53.4 6.5 37 63-102 5-41 (261)
190 KOG1371|consensus 97.5 0.00017 3.7E-09 59.5 5.2 49 65-116 2-51 (343)
191 TIGR01179 galE UDP-glucose-4-e 97.5 0.00019 4.2E-09 55.4 4.9 32 67-101 1-32 (328)
192 PRK06463 fabG 3-ketoacyl-(acyl 97.5 0.00024 5.3E-09 53.9 5.3 36 63-101 5-40 (255)
193 PRK07109 short chain dehydroge 97.5 0.00026 5.6E-09 57.0 5.7 38 63-103 6-43 (334)
194 COG1088 RfbB dTDP-D-glucose 4, 97.5 0.00033 7.2E-09 57.5 6.2 34 66-100 1-34 (340)
195 PRK12743 oxidoreductase; Provi 97.5 0.00044 9.5E-09 52.7 6.6 34 65-101 2-35 (256)
196 PF05368 NmrA: NmrA-like famil 97.4 0.00014 3E-09 54.9 3.7 33 68-103 1-33 (233)
197 PF01118 Semialdhyde_dh: Semia 97.4 0.00038 8.3E-09 48.5 5.7 41 67-108 1-42 (121)
198 PRK06483 dihydromonapterin red 97.4 0.00029 6.2E-09 52.8 5.4 36 65-103 2-37 (236)
199 PRK08217 fabG 3-ketoacyl-(acyl 97.4 0.00029 6.3E-09 52.7 5.3 38 63-103 3-40 (253)
200 PRK08416 7-alpha-hydroxysteroi 97.4 0.00025 5.5E-09 54.2 5.1 37 62-101 5-41 (260)
201 PRK12938 acetyacetyl-CoA reduc 97.4 0.00027 6E-09 53.0 5.2 35 63-100 1-35 (246)
202 PRK05872 short chain dehydroge 97.4 0.0003 6.4E-09 55.3 5.5 38 63-103 7-44 (296)
203 PRK12481 2-deoxy-D-gluconate 3 97.4 0.00026 5.6E-09 54.1 5.0 36 63-101 6-41 (251)
204 PRK07677 short chain dehydroge 97.4 0.00031 6.8E-09 53.2 5.2 36 65-103 1-36 (252)
205 PRK12748 3-ketoacyl-(acyl-carr 97.4 0.00027 5.9E-09 53.7 4.8 36 63-101 3-40 (256)
206 smart00822 PKS_KR This enzymat 97.4 0.00045 9.8E-09 47.9 5.5 37 66-104 1-37 (180)
207 PLN02780 ketoreductase/ oxidor 97.4 0.0003 6.6E-09 56.4 5.2 38 64-104 52-89 (320)
208 PRK07424 bifunctional sterol d 97.4 0.0003 6.4E-09 59.1 5.2 37 63-102 176-212 (406)
209 COG0300 DltE Short-chain dehyd 97.4 0.00033 7.2E-09 56.0 5.2 40 62-104 3-42 (265)
210 TIGR01829 AcAcCoA_reduct aceto 97.4 0.00034 7.3E-09 52.1 5.0 32 66-100 1-32 (242)
211 PRK07792 fabG 3-ketoacyl-(acyl 97.4 0.00061 1.3E-08 53.9 6.7 37 62-101 9-45 (306)
212 PRK07831 short chain dehydroge 97.4 0.00052 1.1E-08 52.3 6.0 40 61-103 13-53 (262)
213 PRK06125 short chain dehydroge 97.4 0.00047 1E-08 52.5 5.7 38 63-103 5-42 (259)
214 PRK06953 short chain dehydroge 97.3 0.00035 7.6E-09 52.1 4.9 35 66-103 2-36 (222)
215 PRK05865 hypothetical protein; 97.3 0.00029 6.3E-09 64.2 5.2 34 66-102 1-34 (854)
216 PRK12824 acetoacetyl-CoA reduc 97.3 0.00042 9.1E-09 51.7 5.1 34 66-102 3-36 (245)
217 PRK06139 short chain dehydroge 97.3 0.00043 9.2E-09 56.0 5.4 38 63-103 5-42 (330)
218 PRK06123 short chain dehydroge 97.3 0.00046 9.9E-09 51.8 5.2 33 65-100 2-34 (248)
219 TIGR02415 23BDH acetoin reduct 97.3 0.00056 1.2E-08 51.5 5.7 34 66-102 1-34 (254)
220 PRK07832 short chain dehydroge 97.3 0.00053 1.1E-08 52.7 5.5 34 66-102 1-34 (272)
221 PRK07201 short chain dehydroge 97.3 0.00049 1.1E-08 59.2 5.6 38 63-103 369-406 (657)
222 PRK09620 hypothetical protein; 97.3 0.00056 1.2E-08 53.3 5.2 35 63-100 1-51 (229)
223 PRK08340 glucose-1-dehydrogena 97.2 0.00066 1.4E-08 51.8 5.4 35 66-103 1-35 (259)
224 PRK07069 short chain dehydroge 97.2 0.00094 2E-08 50.1 6.2 32 67-101 1-32 (251)
225 PLN02260 probable rhamnose bio 97.2 0.0005 1.1E-08 60.0 5.3 28 64-91 379-406 (668)
226 PRK09730 putative NAD(P)-bindi 97.2 0.00062 1.3E-08 50.8 5.0 33 66-101 2-35 (247)
227 PRK08993 2-deoxy-D-gluconate 3 97.2 0.00066 1.4E-08 51.7 5.2 36 63-101 8-43 (253)
228 PRK09009 C factor cell-cell si 97.2 0.00083 1.8E-08 50.2 5.5 35 66-101 1-35 (235)
229 KOG1430|consensus 97.2 0.00064 1.4E-08 56.6 5.2 39 64-103 3-41 (361)
230 PRK06947 glucose-1-dehydrogena 97.2 0.0011 2.5E-08 49.7 6.2 33 65-100 2-34 (248)
231 TIGR01830 3oxo_ACP_reduc 3-oxo 97.2 0.00061 1.3E-08 50.5 4.4 32 68-102 1-32 (239)
232 PRK05884 short chain dehydroge 97.2 0.00082 1.8E-08 50.7 5.0 34 66-102 1-34 (223)
233 TIGR02632 RhaD_aldol-ADH rhamn 97.1 0.00075 1.6E-08 59.6 5.3 38 63-103 412-449 (676)
234 PRK06720 hypothetical protein; 97.1 0.0012 2.6E-08 48.8 5.4 39 62-103 13-51 (169)
235 PRK05855 short chain dehydroge 97.1 0.00096 2.1E-08 55.7 5.4 39 62-103 312-350 (582)
236 TIGR02685 pter_reduc_Leis pter 97.1 0.0014 3.1E-08 50.2 5.9 33 66-101 2-34 (267)
237 PRK08303 short chain dehydroge 97.1 0.0011 2.3E-08 52.9 5.2 37 63-102 6-42 (305)
238 PF00106 adh_short: short chai 97.1 0.0013 2.8E-08 46.5 5.0 34 66-101 1-34 (167)
239 PRK07791 short chain dehydroge 97.1 0.0011 2.5E-08 51.8 5.2 38 62-102 3-40 (286)
240 TIGR01289 LPOR light-dependent 97.0 0.0014 3E-08 52.1 5.7 37 64-103 2-39 (314)
241 TIGR01831 fabG_rel 3-oxoacyl-( 97.0 0.0016 3.5E-08 48.7 5.4 32 68-102 1-32 (239)
242 PRK08324 short chain dehydroge 97.0 0.0012 2.6E-08 58.2 5.4 38 63-103 420-457 (681)
243 PRK08309 short chain dehydroge 97.0 0.0012 2.7E-08 49.3 4.7 33 66-102 1-33 (177)
244 PRK08261 fabG 3-ketoacyl-(acyl 96.9 0.002 4.2E-08 53.5 5.9 39 61-102 206-244 (450)
245 PRK07578 short chain dehydroge 96.9 0.0017 3.7E-08 47.6 4.8 33 66-102 1-33 (199)
246 PRK07370 enoyl-(acyl carrier p 96.9 0.0033 7.2E-08 48.3 6.6 37 63-102 4-42 (258)
247 PRK08594 enoyl-(acyl carrier p 96.9 0.0032 7E-08 48.4 6.3 37 63-102 5-43 (257)
248 PRK06079 enoyl-(acyl carrier p 96.9 0.0017 3.7E-08 49.6 4.7 37 62-101 4-42 (252)
249 PRK08862 short chain dehydroge 96.9 0.0028 6E-08 48.2 5.7 38 63-103 3-40 (227)
250 PRK07533 enoyl-(acyl carrier p 96.9 0.0033 7.1E-08 48.2 6.1 37 63-102 8-46 (258)
251 PRK12859 3-ketoacyl-(acyl-carr 96.9 0.0021 4.6E-08 49.0 5.0 35 63-100 4-40 (256)
252 PRK07041 short chain dehydroge 96.8 0.0018 3.8E-08 48.2 4.0 31 69-102 1-31 (230)
253 PRK06484 short chain dehydroge 96.8 0.0026 5.6E-08 53.4 5.4 38 62-102 266-303 (520)
254 PRK06484 short chain dehydroge 96.8 0.0031 6.6E-08 52.9 5.7 38 63-103 3-40 (520)
255 COG4221 Short-chain alcohol de 96.7 0.0047 1E-07 49.1 6.3 40 62-104 3-42 (246)
256 PF08659 KR: KR domain; Inter 96.7 0.0063 1.4E-07 44.9 6.5 45 67-113 2-47 (181)
257 KOG1205|consensus 96.7 0.0039 8.6E-08 50.4 5.8 42 60-104 7-48 (282)
258 PRK06505 enoyl-(acyl carrier p 96.7 0.0035 7.6E-08 48.8 5.3 37 63-102 5-43 (271)
259 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0041 8.8E-08 46.2 5.3 37 63-102 26-62 (194)
260 PRK08690 enoyl-(acyl carrier p 96.6 0.0038 8.1E-08 48.1 5.0 37 62-101 3-41 (261)
261 PRK07889 enoyl-(acyl carrier p 96.6 0.0052 1.1E-07 47.2 5.8 37 63-102 5-43 (256)
262 PRK14874 aspartate-semialdehyd 96.6 0.005 1.1E-07 50.1 5.6 38 65-102 1-38 (334)
263 COG1091 RfbD dTDP-4-dehydrorha 96.6 0.0044 9.5E-08 50.1 5.2 47 66-116 1-47 (281)
264 PRK08159 enoyl-(acyl carrier p 96.6 0.0048 1E-07 48.0 5.2 38 61-101 6-45 (272)
265 PRK07984 enoyl-(acyl carrier p 96.5 0.0058 1.3E-07 47.4 5.6 36 63-101 4-41 (262)
266 PRK06603 enoyl-(acyl carrier p 96.5 0.005 1.1E-07 47.4 5.1 37 62-101 5-43 (260)
267 TIGR01500 sepiapter_red sepiap 96.5 0.0061 1.3E-07 46.4 5.4 34 67-103 2-39 (256)
268 PRK06940 short chain dehydroge 96.4 0.0078 1.7E-07 46.7 5.5 34 65-103 2-35 (275)
269 PRK08415 enoyl-(acyl carrier p 96.4 0.0075 1.6E-07 47.1 5.4 37 63-102 3-41 (274)
270 PRK05599 hypothetical protein; 96.3 0.0089 1.9E-07 45.5 5.4 34 66-103 1-34 (246)
271 COG1028 FabG Dehydrogenases wi 96.3 0.0087 1.9E-07 45.0 5.3 38 63-103 3-40 (251)
272 PRK06997 enoyl-(acyl carrier p 96.1 0.012 2.6E-07 45.3 5.3 37 62-101 3-41 (260)
273 KOG1203|consensus 96.0 0.0092 2E-07 50.6 4.1 42 60-104 74-115 (411)
274 KOG1431|consensus 95.9 0.024 5.2E-07 45.6 6.1 26 66-91 2-27 (315)
275 KOG4039|consensus 95.9 0.011 2.4E-07 45.9 3.9 38 63-101 16-53 (238)
276 KOG1208|consensus 95.8 0.021 4.6E-07 46.5 5.6 38 62-102 32-69 (314)
277 PRK05579 bifunctional phosphop 95.8 0.016 3.5E-07 48.7 5.0 36 63-101 186-237 (399)
278 PRK05671 aspartate-semialdehyd 95.8 0.02 4.4E-07 47.0 5.4 35 66-100 5-39 (336)
279 cd01336 MDH_cytoplasmic_cytoso 95.7 0.021 4.4E-07 46.6 5.2 37 66-102 3-43 (325)
280 COG3967 DltE Short-chain dehyd 95.7 0.037 8E-07 43.7 6.2 37 63-102 3-39 (245)
281 PRK06732 phosphopantothenate-- 95.7 0.02 4.4E-07 44.3 4.8 27 72-101 23-49 (229)
282 KOG0725|consensus 95.6 0.035 7.6E-07 44.1 5.9 40 62-104 5-44 (270)
283 PRK08664 aspartate-semialdehyd 95.6 0.023 5.1E-07 46.4 5.0 35 66-102 4-38 (349)
284 TIGR00715 precor6x_red precorr 95.6 0.02 4.3E-07 45.5 4.4 35 66-104 1-35 (256)
285 COG1089 Gmd GDP-D-mannose dehy 95.5 0.023 4.9E-07 46.8 4.6 36 65-103 2-37 (345)
286 PLN02730 enoyl-[acyl-carrier-p 95.5 0.03 6.4E-07 45.1 5.1 35 63-101 7-43 (303)
287 PF01488 Shikimate_DH: Shikima 95.4 0.049 1.1E-06 38.7 5.7 41 61-104 8-48 (135)
288 KOG1201|consensus 95.4 0.059 1.3E-06 44.0 6.6 41 61-104 34-74 (300)
289 TIGR01296 asd_B aspartate-semi 95.3 0.028 6.1E-07 46.0 4.7 35 67-101 1-35 (339)
290 KOG1207|consensus 95.2 0.031 6.8E-07 43.4 4.3 42 60-104 2-43 (245)
291 PLN00015 protochlorophyllide r 95.2 0.029 6.3E-07 44.3 4.3 31 69-102 1-32 (308)
292 PLN02968 Probable N-acetyl-gam 95.1 0.038 8.2E-07 46.2 4.9 36 64-101 37-72 (381)
293 PLN02383 aspartate semialdehyd 95.0 0.061 1.3E-06 44.3 5.6 36 65-100 7-42 (344)
294 KOG2865|consensus 94.9 0.038 8.2E-07 45.8 4.2 37 63-102 59-95 (391)
295 PRK00436 argC N-acetyl-gamma-g 94.8 0.061 1.3E-06 44.0 5.2 33 66-100 3-35 (343)
296 PF00056 Ldh_1_N: lactate/mala 94.8 0.098 2.1E-06 37.6 5.6 37 66-103 1-37 (141)
297 TIGR01915 npdG NADPH-dependent 94.7 0.056 1.2E-06 41.1 4.6 36 66-104 1-36 (219)
298 PRK08040 putative semialdehyde 94.7 0.077 1.7E-06 43.7 5.6 37 64-100 3-39 (336)
299 PF02670 DXP_reductoisom: 1-de 94.7 0.11 2.5E-06 37.4 5.8 36 68-104 1-36 (129)
300 KOG0747|consensus 94.6 0.034 7.4E-07 45.7 3.1 32 65-96 6-37 (331)
301 TIGR01850 argC N-acetyl-gamma- 94.5 0.063 1.4E-06 44.0 4.7 30 66-97 1-30 (346)
302 PRK12548 shikimate 5-dehydroge 94.4 0.16 3.4E-06 40.6 6.6 37 63-102 124-160 (289)
303 cd05294 LDH-like_MDH_nadp A la 94.4 0.094 2E-06 42.3 5.4 36 66-102 1-36 (309)
304 KOG1014|consensus 94.3 0.12 2.5E-06 42.6 5.6 41 60-104 45-85 (312)
305 PRK05086 malate dehydrogenase; 94.3 0.11 2.3E-06 42.1 5.4 38 66-103 1-38 (312)
306 KOG1372|consensus 94.1 0.16 3.5E-06 41.5 6.1 50 65-118 28-77 (376)
307 cd01485 E1-1_like Ubiquitin ac 94.1 0.11 2.5E-06 39.3 4.9 40 59-101 13-52 (198)
308 TIGR00978 asd_EA aspartate-sem 94.0 0.11 2.4E-06 42.4 5.1 32 66-99 1-32 (341)
309 PRK06300 enoyl-(acyl carrier p 94.0 0.12 2.6E-06 41.5 5.1 35 62-99 5-41 (299)
310 cd01065 NAD_bind_Shikimate_DH 93.5 0.25 5.5E-06 34.7 5.6 39 63-104 17-55 (155)
311 cd01492 Aos1_SUMO Ubiquitin ac 93.3 0.18 4E-06 38.1 4.9 39 60-101 16-54 (197)
312 PRK00258 aroE shikimate 5-dehy 93.2 0.22 4.9E-06 39.3 5.5 39 63-104 121-159 (278)
313 PLN00106 malate dehydrogenase 93.1 0.25 5.3E-06 40.5 5.7 37 65-102 18-54 (323)
314 cd01080 NAD_bind_m-THF_DH_Cycl 93.0 0.23 5E-06 37.0 5.0 37 63-102 42-78 (168)
315 TIGR01851 argC_other N-acetyl- 93.0 0.15 3.3E-06 41.7 4.3 34 66-100 2-35 (310)
316 PRK14106 murD UDP-N-acetylmura 93.0 0.18 4E-06 41.7 4.8 36 63-102 3-38 (450)
317 COG0002 ArgC Acetylglutamate s 92.7 0.18 3.8E-06 42.1 4.4 39 66-105 3-41 (349)
318 PF01113 DapB_N: Dihydrodipico 92.7 0.32 7E-06 34.0 5.1 36 66-102 1-36 (124)
319 COG1748 LYS9 Saccharopine dehy 92.6 0.16 3.5E-06 42.9 3.9 36 66-104 2-37 (389)
320 TIGR00521 coaBC_dfp phosphopan 92.5 0.25 5.4E-06 41.5 5.0 36 63-101 183-234 (390)
321 PRK12475 thiamine/molybdopteri 92.5 0.24 5.2E-06 40.6 4.8 41 59-102 18-58 (338)
322 KOG4169|consensus 92.5 0.18 3.8E-06 40.4 3.8 49 63-114 3-51 (261)
323 PRK11863 N-acetyl-gamma-glutam 92.4 0.28 6E-06 40.2 5.1 34 66-101 3-36 (313)
324 TIGR02354 thiF_fam2 thiamine b 92.1 0.29 6.3E-06 37.2 4.6 41 58-101 14-54 (200)
325 PRK06728 aspartate-semialdehyd 92.1 0.33 7.2E-06 40.3 5.3 36 65-100 5-41 (347)
326 KOG2015|consensus 92.0 0.47 1E-05 39.9 6.0 60 34-99 12-71 (422)
327 cd01075 NAD_bind_Leu_Phe_Val_D 91.9 0.4 8.7E-06 36.3 5.1 36 63-102 26-61 (200)
328 PRK06849 hypothetical protein; 91.8 0.46 1E-05 38.9 5.7 38 64-104 3-40 (389)
329 TIGR00243 Dxr 1-deoxy-D-xylulo 91.7 0.41 8.9E-06 40.5 5.4 36 66-102 2-37 (389)
330 PRK08655 prephenate dehydrogen 91.7 0.36 7.7E-06 40.9 5.0 35 66-103 1-35 (437)
331 PRK12749 quinate/shikimate deh 91.6 0.6 1.3E-05 37.5 6.1 38 63-103 122-159 (288)
332 PF00899 ThiF: ThiF family; I 91.5 0.43 9.3E-06 33.4 4.6 35 64-101 1-35 (135)
333 PRK11199 tyrA bifunctional cho 91.4 0.36 7.7E-06 40.0 4.7 35 65-102 98-132 (374)
334 PRK00048 dihydrodipicolinate r 91.3 0.51 1.1E-05 37.0 5.3 36 66-102 2-37 (257)
335 PTZ00325 malate dehydrogenase; 91.3 0.44 9.4E-06 39.0 5.0 38 63-101 6-43 (321)
336 cd08259 Zn_ADH5 Alcohol dehydr 91.2 0.55 1.2E-05 36.2 5.3 36 64-102 162-197 (332)
337 PRK02472 murD UDP-N-acetylmura 91.2 0.37 7.9E-06 39.9 4.6 36 63-102 3-38 (447)
338 COG0136 Asd Aspartate-semialde 91.1 0.46 1E-05 39.4 5.0 35 66-100 2-36 (334)
339 PRK05447 1-deoxy-D-xylulose 5- 91.1 0.58 1.3E-05 39.5 5.7 35 66-101 2-36 (385)
340 PRK07688 thiamine/molybdopteri 91.0 0.45 9.8E-06 39.0 5.0 40 60-102 19-58 (339)
341 cd01337 MDH_glyoxysomal_mitoch 91.0 0.52 1.1E-05 38.4 5.2 35 66-101 1-35 (310)
342 PRK06129 3-hydroxyacyl-CoA deh 90.8 0.43 9.3E-06 38.1 4.5 34 66-103 3-36 (308)
343 PF02737 3HCDH_N: 3-hydroxyacy 90.8 0.47 1E-05 35.3 4.5 34 67-104 1-34 (180)
344 PRK08328 hypothetical protein; 90.7 0.53 1.1E-05 36.4 4.8 41 59-102 21-61 (231)
345 KOG1611|consensus 90.7 0.57 1.2E-05 37.4 5.0 39 65-104 3-41 (249)
346 smart00859 Semialdhyde_dh Semi 90.7 0.59 1.3E-05 32.0 4.6 33 67-101 1-34 (122)
347 PF02826 2-Hacid_dh_C: D-isome 90.6 0.81 1.8E-05 33.7 5.6 39 62-104 33-71 (178)
348 PRK05690 molybdopterin biosynt 90.6 0.72 1.6E-05 36.0 5.5 40 60-102 27-66 (245)
349 PF03435 Saccharop_dh: Sacchar 90.6 0.44 9.6E-06 38.9 4.5 35 68-104 1-35 (386)
350 cd00704 MDH Malate dehydrogena 90.5 0.48 1E-05 38.6 4.6 35 67-102 2-41 (323)
351 PRK12549 shikimate 5-dehydroge 90.3 0.66 1.4E-05 37.0 5.2 39 63-104 125-163 (284)
352 TIGR00507 aroE shikimate 5-deh 90.2 0.8 1.7E-05 35.9 5.5 36 64-103 116-151 (270)
353 cd05191 NAD_bind_amino_acid_DH 90.2 1 2.2E-05 29.3 5.2 35 63-100 21-55 (86)
354 cd01338 MDH_choloroplast_like 90.1 0.73 1.6E-05 37.6 5.4 37 65-102 2-43 (322)
355 PF04127 DFP: DNA / pantothena 89.7 0.88 1.9E-05 34.4 5.2 36 63-101 1-52 (185)
356 PRK06718 precorrin-2 dehydroge 89.7 0.84 1.8E-05 34.7 5.1 36 62-101 7-42 (202)
357 PLN02520 bifunctional 3-dehydr 89.6 0.69 1.5E-05 40.1 5.1 36 63-102 377-412 (529)
358 PRK00066 ldh L-lactate dehydro 89.6 1.6 3.5E-05 35.3 6.9 39 64-104 5-43 (315)
359 PRK14192 bifunctional 5,10-met 89.5 0.75 1.6E-05 37.0 4.9 36 63-101 157-192 (283)
360 TIGR02813 omega_3_PfaA polyket 89.5 0.67 1.4E-05 47.3 5.5 38 62-101 1994-2031(2582)
361 PLN02696 1-deoxy-D-xylulose-5- 89.3 0.94 2E-05 39.1 5.6 37 64-101 56-92 (454)
362 TIGR01745 asd_gamma aspartate- 89.3 0.63 1.4E-05 39.0 4.5 35 66-100 1-36 (366)
363 PRK09496 trkA potassium transp 89.3 0.62 1.3E-05 38.4 4.4 34 66-103 1-34 (453)
364 cd08295 double_bond_reductase_ 89.3 0.64 1.4E-05 36.7 4.3 36 64-102 151-186 (338)
365 PRK06598 aspartate-semialdehyd 89.3 0.57 1.2E-05 39.3 4.2 35 66-100 2-37 (369)
366 TIGR02355 moeB molybdopterin s 89.2 0.7 1.5E-05 36.1 4.4 40 60-102 19-58 (240)
367 TIGR02825 B4_12hDH leukotriene 89.1 0.68 1.5E-05 36.3 4.3 36 64-102 138-173 (325)
368 COG0169 AroE Shikimate 5-dehyd 89.1 1 2.2E-05 36.4 5.4 38 64-104 125-162 (283)
369 cd00755 YgdL_like Family of ac 88.9 0.8 1.7E-05 35.8 4.5 39 60-101 6-44 (231)
370 PRK08762 molybdopterin biosynt 88.7 0.87 1.9E-05 37.6 4.9 38 61-101 131-168 (376)
371 TIGR01772 MDH_euk_gproteo mala 88.7 0.88 1.9E-05 37.0 4.8 35 67-102 1-35 (312)
372 TIGR02853 spore_dpaA dipicolin 88.7 0.92 2E-05 36.3 4.9 37 63-103 149-185 (287)
373 cd08294 leukotriene_B4_DH_like 88.6 0.82 1.8E-05 35.4 4.5 36 64-102 143-178 (329)
374 COG0743 Dxr 1-deoxy-D-xylulose 88.5 1.2 2.6E-05 37.7 5.5 36 66-102 2-37 (385)
375 TIGR01759 MalateDH-SF1 malate 88.4 1.5 3.2E-05 35.9 6.0 36 66-102 4-44 (323)
376 KOG1209|consensus 88.2 0.92 2E-05 36.4 4.5 37 65-104 7-44 (289)
377 COG1179 Dinucleotide-utilizing 88.1 0.96 2.1E-05 36.4 4.6 39 60-101 25-63 (263)
378 PRK06153 hypothetical protein; 88.0 1 2.2E-05 38.2 4.9 40 59-101 170-209 (393)
379 PRK08223 hypothetical protein; 87.9 0.99 2.1E-05 36.6 4.6 41 59-102 21-61 (287)
380 PRK13656 trans-2-enoyl-CoA red 87.9 1.8 4E-05 36.7 6.4 34 64-101 40-75 (398)
381 PRK15116 sulfur acceptor prote 87.9 1.1 2.3E-05 36.0 4.8 39 60-101 25-63 (268)
382 PRK14175 bifunctional 5,10-met 87.9 2 4.2E-05 34.9 6.3 37 63-102 156-192 (286)
383 cd08253 zeta_crystallin Zeta-c 87.4 1.6 3.5E-05 33.0 5.3 37 63-102 143-179 (325)
384 cd05276 p53_inducible_oxidored 87.4 1.5 3.3E-05 33.0 5.2 36 63-101 138-173 (323)
385 TIGR02114 coaB_strep phosphopa 87.2 1 2.2E-05 34.8 4.2 26 72-100 22-47 (227)
386 PRK06522 2-dehydropantoate 2-r 87.1 1.4 2.9E-05 34.3 4.9 33 66-102 1-33 (304)
387 PRK06901 aspartate-semialdehyd 87.0 0.84 1.8E-05 37.7 3.8 35 66-101 4-38 (322)
388 cd08289 MDR_yhfp_like Yhfp put 87.0 1.4 3E-05 34.1 4.8 35 65-102 147-181 (326)
389 PRK08644 thiamine biosynthesis 86.9 1.8 3.8E-05 33.2 5.3 40 59-101 22-61 (212)
390 cd05188 MDR Medium chain reduc 86.9 1.2 2.5E-05 33.0 4.2 36 63-102 133-168 (271)
391 COG5322 Predicted dehydrogenas 86.8 0.86 1.9E-05 37.5 3.6 37 63-102 165-201 (351)
392 cd05213 NAD_bind_Glutamyl_tRNA 86.8 1.6 3.4E-05 35.1 5.2 39 63-104 176-214 (311)
393 KOG2733|consensus 86.7 0.62 1.3E-05 39.5 2.9 37 67-104 7-45 (423)
394 PTZ00117 malate dehydrogenase; 86.6 2.2 4.8E-05 34.5 6.0 39 63-104 3-41 (319)
395 TIGR02356 adenyl_thiF thiazole 86.6 1.9 4.1E-05 32.6 5.3 40 59-101 15-54 (202)
396 KOG1200|consensus 86.6 1.7 3.8E-05 34.3 5.1 44 58-104 7-50 (256)
397 KOG1478|consensus 86.5 2.2 4.7E-05 35.0 5.8 40 65-104 3-44 (341)
398 cd08293 PTGR2 Prostaglandin re 86.5 1.2 2.6E-05 34.9 4.3 35 66-102 156-190 (345)
399 cd01483 E1_enzyme_family Super 86.4 1.9 4.2E-05 30.2 5.0 32 67-101 1-32 (143)
400 PF13241 NAD_binding_7: Putati 86.2 1.1 2.4E-05 30.2 3.5 35 63-101 5-39 (103)
401 TIGR01381 E1_like_apg7 E1-like 86.1 1.4 2.9E-05 39.8 4.8 38 61-101 334-371 (664)
402 PRK05442 malate dehydrogenase; 85.8 1.8 3.9E-05 35.4 5.1 37 65-102 4-45 (326)
403 KOG2013|consensus 85.7 1.4 3E-05 38.8 4.6 38 60-100 7-44 (603)
404 PRK13243 glyoxylate reductase; 85.7 1.9 4.2E-05 35.1 5.3 38 62-103 147-184 (333)
405 PRK05600 thiamine biosynthesis 85.7 1.7 3.6E-05 36.2 5.0 40 59-101 35-74 (370)
406 PF03807 F420_oxidored: NADP o 85.7 2.8 6E-05 27.1 5.1 36 67-103 1-37 (96)
407 TIGR01758 MDH_euk_cyt malate d 85.7 1.6 3.5E-05 35.6 4.8 36 67-103 1-41 (324)
408 PRK07878 molybdopterin biosynt 85.5 1.6 3.4E-05 36.4 4.7 39 60-101 37-75 (392)
409 PRK14194 bifunctional 5,10-met 85.4 1.9 4.2E-05 35.2 5.1 37 63-102 157-193 (301)
410 TIGR01035 hemA glutamyl-tRNA r 85.4 1.9 4.2E-05 36.2 5.2 39 63-104 178-216 (417)
411 cd00650 LDH_MDH_like NAD-depen 85.3 2 4.4E-05 33.4 5.0 37 68-104 1-38 (263)
412 COG2085 Predicted dinucleotide 85.2 2.9 6.4E-05 32.6 5.8 32 67-101 2-33 (211)
413 cd08268 MDR2 Medium chain dehy 85.0 2.3 5E-05 32.2 5.1 36 64-102 144-179 (328)
414 cd05311 NAD_bind_2_malic_enz N 85.0 2.2 4.7E-05 33.0 5.0 38 63-101 23-60 (226)
415 PRK05808 3-hydroxybutyryl-CoA 84.9 1.9 4E-05 33.8 4.7 35 66-104 4-38 (282)
416 cd00757 ThiF_MoeB_HesA_family 84.8 2.5 5.4E-05 32.3 5.3 39 60-101 16-54 (228)
417 PRK07411 hypothetical protein; 84.7 1.9 4.1E-05 36.0 4.9 39 60-101 33-71 (390)
418 cd05293 LDH_1 A subgroup of L- 84.7 4.2 9.2E-05 32.9 6.8 38 65-104 3-40 (312)
419 PRK06223 malate dehydrogenase; 84.6 3.9 8.6E-05 32.3 6.5 36 66-104 3-38 (307)
420 PRK09880 L-idonate 5-dehydroge 84.6 2 4.3E-05 34.2 4.7 38 64-104 169-206 (343)
421 PLN00112 malate dehydrogenase 84.5 3.3 7.1E-05 35.6 6.3 43 63-105 98-146 (444)
422 COG0039 Mdh Malate/lactate deh 84.3 2.3 5E-05 34.9 5.1 37 66-104 1-37 (313)
423 PRK13940 glutamyl-tRNA reducta 84.1 2.5 5.3E-05 35.8 5.3 39 63-104 179-217 (414)
424 PLN02545 3-hydroxybutyryl-CoA 84.1 2.4 5.1E-05 33.4 5.0 35 66-104 5-39 (295)
425 PRK14188 bifunctional 5,10-met 84.1 2.5 5.4E-05 34.4 5.2 37 63-102 156-193 (296)
426 PRK00045 hemA glutamyl-tRNA re 84.1 2.4 5.2E-05 35.6 5.2 39 63-104 180-218 (423)
427 cd08250 Mgc45594_like Mgc45594 84.0 2.2 4.7E-05 33.1 4.7 37 63-102 138-174 (329)
428 TIGR02824 quinone_pig3 putativ 84.0 2.9 6.4E-05 31.6 5.3 36 64-102 139-174 (325)
429 PLN00203 glutamyl-tRNA reducta 83.9 2.2 4.7E-05 37.2 5.0 39 63-104 264-302 (519)
430 cd01484 E1-2_like Ubiquitin ac 83.8 1.9 4.1E-05 33.7 4.3 32 67-101 1-32 (234)
431 TIGR01809 Shik-DH-AROM shikima 83.7 3 6.4E-05 33.2 5.4 39 63-104 123-161 (282)
432 PLN03154 putative allyl alcoho 83.6 2.7 5.8E-05 33.8 5.2 36 64-102 158-193 (348)
433 cd05292 LDH_2 A subgroup of L- 83.6 4.9 0.00011 32.3 6.7 37 66-104 1-37 (308)
434 PRK05597 molybdopterin biosynt 83.5 3.1 6.7E-05 34.3 5.6 40 60-102 23-62 (355)
435 cd05291 HicDH_like L-2-hydroxy 83.3 4.1 8.8E-05 32.6 6.1 37 66-104 1-37 (306)
436 KOG2018|consensus 83.2 2.9 6.3E-05 35.2 5.3 38 61-101 70-107 (430)
437 PRK09260 3-hydroxybutyryl-CoA 82.9 2.6 5.6E-05 33.2 4.7 35 66-104 2-36 (288)
438 COG0289 DapB Dihydrodipicolina 82.8 2.8 6.2E-05 33.8 4.9 38 65-103 2-39 (266)
439 cd08266 Zn_ADH_like1 Alcohol d 82.5 3.5 7.5E-05 31.5 5.2 37 63-102 165-201 (342)
440 COG3268 Uncharacterized conser 82.5 1.2 2.7E-05 37.4 2.9 35 66-103 7-41 (382)
441 PRK07819 3-hydroxybutyryl-CoA 82.4 3 6.5E-05 33.1 5.0 35 66-104 6-40 (286)
442 PRK14027 quinate/shikimate deh 82.3 3.6 7.9E-05 32.9 5.4 39 63-104 125-163 (283)
443 PRK12480 D-lactate dehydrogena 82.3 3.3 7.1E-05 33.8 5.2 38 62-103 143-180 (330)
444 PRK12409 D-amino acid dehydrog 82.3 3.1 6.7E-05 33.8 5.1 32 67-102 3-34 (410)
445 PLN02602 lactate dehydrogenase 82.2 5.6 0.00012 32.9 6.6 37 66-104 38-74 (350)
446 TIGR00036 dapB dihydrodipicoli 82.1 3.5 7.5E-05 32.5 5.2 35 66-101 2-36 (266)
447 COG0287 TyrA Prephenate dehydr 82.0 3.6 7.9E-05 33.0 5.3 35 66-104 4-38 (279)
448 PRK00676 hemA glutamyl-tRNA re 81.9 3.2 6.9E-05 34.5 5.1 39 63-104 172-210 (338)
449 PRK13771 putative alcohol dehy 81.9 3 6.5E-05 32.5 4.7 37 64-103 162-198 (334)
450 PRK07417 arogenate dehydrogena 81.8 3.1 6.8E-05 32.6 4.8 34 66-103 1-34 (279)
451 cd05212 NAD_bind_m-THF_DH_Cycl 81.7 7.1 0.00015 28.2 6.3 36 63-101 26-61 (140)
452 cd01491 Ube1_repeat1 Ubiquitin 81.4 3.3 7.2E-05 33.5 4.9 39 60-101 14-52 (286)
453 PRK05476 S-adenosyl-L-homocyst 81.4 3.2 6.9E-05 35.4 5.0 38 63-104 210-247 (425)
454 PRK06444 prephenate dehydrogen 81.4 2.9 6.2E-05 31.9 4.3 26 66-91 1-26 (197)
455 PLN02256 arogenate dehydrogena 81.3 3.6 7.7E-05 33.3 5.1 37 62-102 33-69 (304)
456 cd05288 PGDH Prostaglandin deh 81.2 4.1 8.9E-05 31.5 5.3 36 64-102 145-180 (329)
457 PRK00711 D-amino acid dehydrog 81.1 3.6 7.7E-05 33.4 5.1 33 66-102 1-33 (416)
458 PRK01438 murD UDP-N-acetylmura 81.1 6 0.00013 33.2 6.6 36 63-102 14-49 (480)
459 cd08270 MDR4 Medium chain dehy 81.1 3.3 7.1E-05 31.6 4.6 36 64-102 132-167 (305)
460 cd05280 MDR_yhdh_yhfp Yhdh and 81.1 3.5 7.5E-05 31.7 4.8 35 65-102 147-181 (325)
461 TIGR03201 dearomat_had 6-hydro 81.0 2.9 6.4E-05 33.3 4.5 35 64-102 166-200 (349)
462 PTZ00245 ubiquitin activating 81.0 3.6 7.8E-05 33.5 4.9 40 60-102 21-60 (287)
463 COG0604 Qor NADPH:quinone redu 81.0 3.1 6.8E-05 33.7 4.7 35 65-101 143-177 (326)
464 KOG0023|consensus 80.9 4.3 9.4E-05 34.0 5.5 36 64-103 181-216 (360)
465 cd05290 LDH_3 A subgroup of L- 80.9 6 0.00013 32.0 6.3 36 67-104 1-36 (307)
466 PRK08306 dipicolinate synthase 80.8 4.2 9.1E-05 32.6 5.3 37 63-103 150-186 (296)
467 PF00070 Pyr_redox: Pyridine n 80.7 5.8 0.00013 25.0 5.0 30 72-104 5-34 (80)
468 cd08244 MDR_enoyl_red Possible 80.6 4.6 0.0001 31.0 5.3 36 64-102 142-177 (324)
469 PRK08293 3-hydroxybutyryl-CoA 80.5 3.6 7.8E-05 32.4 4.8 35 66-104 4-38 (287)
470 cd01488 Uba3_RUB Ubiquitin act 80.4 2.9 6.2E-05 33.9 4.2 32 67-101 1-32 (291)
471 cd08243 quinone_oxidoreductase 80.2 4.9 0.00011 30.6 5.3 36 64-102 142-177 (320)
472 PRK06035 3-hydroxyacyl-CoA deh 80.1 4.1 8.9E-05 32.0 5.0 35 66-104 4-38 (291)
473 smart00829 PKS_ER Enoylreducta 80.0 3.8 8.3E-05 30.2 4.6 37 63-102 103-139 (288)
474 cd01487 E1_ThiF_like E1_ThiF_l 80.0 4.3 9.3E-05 30.0 4.8 33 67-102 1-33 (174)
475 PF13561 adh_short_C2: Enoyl-( 79.8 2.6 5.6E-05 31.6 3.6 30 72-104 1-32 (241)
476 PRK00094 gpsA NAD(P)H-dependen 79.8 4.4 9.6E-05 31.8 5.1 34 66-103 2-35 (325)
477 TIGR02822 adh_fam_2 zinc-bindi 79.7 4.4 9.6E-05 32.2 5.1 37 64-104 165-201 (329)
478 cd08292 ETR_like_2 2-enoyl thi 79.7 4.6 0.0001 31.1 5.1 36 64-102 139-174 (324)
479 TIGR02817 adh_fam_1 zinc-bindi 79.6 4.2 9.1E-05 31.6 4.9 35 65-102 149-184 (336)
480 PF03446 NAD_binding_2: NAD bi 79.6 4.3 9.3E-05 29.3 4.6 34 66-103 2-35 (163)
481 cd08230 glucose_DH Glucose deh 79.6 7.1 0.00015 31.1 6.2 34 64-101 172-205 (355)
482 PRK09310 aroDE bifunctional 3- 79.3 4.4 9.5E-05 34.7 5.2 36 63-102 330-365 (477)
483 PF01408 GFO_IDH_MocA: Oxidore 79.2 4 8.6E-05 27.2 4.1 34 67-101 2-35 (120)
484 PLN02928 oxidoreductase family 79.2 4.3 9.2E-05 33.4 4.9 36 62-101 156-191 (347)
485 PRK07877 hypothetical protein; 78.8 3.5 7.6E-05 37.4 4.7 40 60-102 102-141 (722)
486 cd08246 crotonyl_coA_red croto 78.6 3.9 8.5E-05 33.0 4.5 36 64-102 193-228 (393)
487 PRK09496 trkA potassium transp 78.6 4.6 0.0001 33.3 5.0 35 65-103 231-265 (453)
488 cd05289 MDR_like_2 alcohol deh 78.5 6 0.00013 29.7 5.3 37 63-102 143-179 (309)
489 cd08288 MDR_yhdh Yhdh putative 78.4 4.9 0.00011 31.0 4.8 36 64-102 146-181 (324)
490 cd08238 sorbose_phosphate_red 78.4 3.9 8.5E-05 33.6 4.5 38 65-102 176-213 (410)
491 PTZ00082 L-lactate dehydrogena 78.1 6 0.00013 32.2 5.5 40 62-104 3-42 (321)
492 PRK07634 pyrroline-5-carboxyla 78.0 6 0.00013 29.9 5.2 37 64-101 3-40 (245)
493 cd05286 QOR2 Quinone oxidoredu 77.9 6.1 0.00013 29.6 5.2 35 64-101 136-170 (320)
494 cd01493 APPBP1_RUB Ubiquitin a 77.9 3.9 8.6E-05 34.8 4.5 38 61-101 16-53 (425)
495 TIGR02823 oxido_YhdH putative 77.9 5 0.00011 31.0 4.8 36 64-102 144-180 (323)
496 cd05282 ETR_like 2-enoyl thioe 77.9 5 0.00011 30.8 4.7 36 64-102 138-173 (323)
497 cd08248 RTN4I1 Human Reticulon 77.9 6.2 0.00013 30.8 5.4 34 65-101 163-196 (350)
498 PRK11880 pyrroline-5-carboxyla 77.8 4.5 9.8E-05 31.1 4.5 37 66-103 3-39 (267)
499 KOG1210|consensus 77.7 3.5 7.5E-05 34.3 3.9 37 66-105 34-70 (331)
500 cd01486 Apg7 Apg7 is an E1-lik 77.6 3.9 8.4E-05 33.7 4.2 31 67-100 1-31 (307)
No 1
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.4e-14 Score=123.38 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=72.9
Q ss_pred cCCceeeccchhhhhhc---ccccCChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh
Q psy3445 12 STKYKVKPLEITEDIVN---SKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA 88 (121)
Q Consensus 12 ~~~~~~~~~p~~~~~i~---~~~~~~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~ 88 (121)
.+|++++++|.+.++++ ...++++||||||+ + +.. |...+..+++||+|+||||||+||+++|+|+++.
T Consensus 202 ~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~----p-V~~---d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~ 273 (588)
T COG1086 202 RTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRP----P-VAL---DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKF 273 (588)
T ss_pred hcCCcEEecCcHHHHHHhccccccCCHHHHhCCC----C-CCC---CHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc
Confidence 47899999999999776 33499999999996 2 333 6778999999999999999999999999999999
Q ss_pred CCCccEEEEEecCCCC
Q psy3445 89 IPHLKHIYLLVRPKKG 104 (121)
Q Consensus 89 ~~~~~~V~~l~R~~~~ 104 (121)
+|. +|+.+.|++.+
T Consensus 274 ~p~--~i~l~~~~E~~ 287 (588)
T COG1086 274 NPK--EIILFSRDEYK 287 (588)
T ss_pred CCC--EEEEecCchHH
Confidence 884 99999998765
No 2
>PLN02996 fatty acyl-CoA reductase
Probab=99.26 E-value=1.1e-11 Score=105.05 Aligned_cols=63 Identities=37% Similarity=0.741 Sum_probs=55.0
Q ss_pred cchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH-HHhhccC
Q psy3445 57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE-AIFEDRI 119 (121)
Q Consensus 57 ~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~-e~~~~~~ 119 (121)
+++.+|+++++|+|||||||+|++++++|++.++++.+|++++|.....++.+|+. +++..+.
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~ 66 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDL 66 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchH
Confidence 46899999999999999999999999999998888889999999988888888874 5554433
No 3
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.19 E-value=4.9e-11 Score=104.02 Aligned_cols=65 Identities=40% Similarity=0.763 Sum_probs=56.2
Q ss_pred CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH-HHhhccC
Q psy3445 55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE-AIFEDRI 119 (121)
Q Consensus 55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~-e~~~~~~ 119 (121)
|-..+.+|+++++|+|||||||+|++++++|++.+|++.+|++++|.+.+.++.+|+. +++..+.
T Consensus 109 ~~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~l 174 (605)
T PLN02503 109 DGIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAEL 174 (605)
T ss_pred CCcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhh
Confidence 5557899999999999999999999999999999888889999999988888888884 5554443
No 4
>KOG1221|consensus
Probab=99.19 E-value=3.2e-11 Score=102.44 Aligned_cols=63 Identities=54% Similarity=0.985 Sum_probs=59.2
Q ss_pred chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhhccCC
Q psy3445 58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120 (121)
Q Consensus 58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~~~~F 120 (121)
.+.+|+++|+|+|||||||+|+.+++.|++..|++++||++.|.+.++++.+|+.+++.++.|
T Consensus 5 ~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF 67 (467)
T KOG1221|consen 5 DIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLF 67 (467)
T ss_pred cHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHH
Confidence 488999999999999999999999999999999999999999999999999999988877766
No 5
>KOG1502|consensus
Probab=98.74 E-value=1.8e-08 Score=82.56 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=36.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~ 105 (121)
.+++|+||||+||||+||+++||++|| .|++.+|++...
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~ 43 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDE 43 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchh
Confidence 578999999999999999999999999 899999987663
No 6
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=98.71 E-value=1.7e-08 Score=77.73 Aligned_cols=45 Identities=44% Similarity=0.774 Sum_probs=35.7
Q ss_pred EEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHh
Q psy3445 70 VTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF 115 (121)
Q Consensus 70 VTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~ 115 (121)
|||||||+|++++++|++.++.+ +|+||+|..+..++.+|+.+.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l 45 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDAL 45 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhc
Confidence 79999999999999999997755 9999999887767777875443
No 7
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.54 E-value=1.4e-07 Score=78.64 Aligned_cols=49 Identities=37% Similarity=0.603 Sum_probs=43.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~ 116 (121)
++|++||||||+|.++++.|+.+-+ .+|+|++|..+.+.+.+|+.+.++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~ 49 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFD 49 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhh
Confidence 5799999999999999999999865 599999998887777888887665
No 8
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.44 E-value=3.5e-07 Score=73.48 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+|||||||||++++++|++.++ +|++++|..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 5679999999999999999999999986 799998854
No 9
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.42 E-value=4.2e-07 Score=72.72 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.4
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+++|+|+||||+||||+++++.|++.|+ +|+++.|+...
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~ 40 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGA---EVYGYSLDPPT 40 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCCC---EEEEEeCCCcc
Confidence 56789999999999999999999999987 78899987543
No 10
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.42 E-value=2.5e-07 Score=76.15 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=58.4
Q ss_pred cCCceeeccchhhhhhcccc---------cCChhh------------hhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEE
Q psy3445 12 STKYKVKPLEITEDIVNSKY---------YKDPLQ------------LLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFV 70 (121)
Q Consensus 12 ~~~~~~~~~p~~~~~i~~~~---------~~~~~d------------Ll~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlV 70 (121)
+.|+++..+|++..++.+.. .++|+| ++++. ... +...+...+.+++|+|
T Consensus 90 ~~G~~i~~Lg~~tsiv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~-----V~l----a~~~lg~~l~~k~VLV 160 (340)
T PRK14982 90 KKGINITALGGFSSIIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICRQ-----VEQ----NAPRLGIDLSKATVAV 160 (340)
T ss_pred HCCCeEEEcCChHHHhcCCcccccccccccceeccccccCCchhHHHHHHHH-----HHH----hHHHhccCcCCCEEEE
Confidence 47999999999999997543 345554 44431 111 1222333578899999
Q ss_pred EcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445 71 TGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK 103 (121)
Q Consensus 71 TGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~ 103 (121)
|||+|+||++++++|+.. ++ .+++++.|+..
T Consensus 161 tGAtG~IGs~lar~L~~~~gv--~~lilv~R~~~ 192 (340)
T PRK14982 161 VGATGDIGSAVCRWLDAKTGV--AELLLVARQQE 192 (340)
T ss_pred EccChHHHHHHHHHHHhhCCC--CEEEEEcCCHH
Confidence 999999999999999864 44 48999998744
No 11
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.41 E-value=4e-07 Score=71.19 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.8
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++|+|||||||||++++++|++.|+ +|++++|+...
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~r~~~~ 40 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY---TVKATVRDPND 40 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC---EEEEEEcCCCc
Confidence 568999999999999999999999987 79999987543
No 12
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=98.39 E-value=5.8e-07 Score=70.35 Aligned_cols=46 Identities=39% Similarity=0.649 Sum_probs=35.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHH
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e 113 (121)
+|+|||||||||++++++|++.++. .+|++++|+.......+++.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-~~V~~l~R~~~~~~~~~~l~~ 46 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-AKVICLVRAASEEHAMERLRE 46 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-CEEEEEEccCCHHHHHHHHHH
Confidence 5899999999999999999998742 379999998764333444443
No 13
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.32 E-value=9.5e-07 Score=70.15 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+||||++++++|++.|+ +|++++|+..
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~r~~~ 44 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY---AVNTTVRDPE 44 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence 4578999999999999999999999987 7888888754
No 14
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.32 E-value=8.8e-07 Score=70.24 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+|||||||+|++++++|++.|+ +|++++|+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~~ 35 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNLR 35 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcChH
Confidence 5899999999999999999999987 7999999743
No 15
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.30 E-value=1.3e-06 Score=68.82 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=33.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+++|+|||||||||++++++|++.|+ +|++++|+...
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~ 41 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATVRDLTD 41 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCCcc
Confidence 478999999999999999999999987 79999997654
No 16
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.29 E-value=2.1e-06 Score=74.99 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445 55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK 103 (121)
Q Consensus 55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~ 103 (121)
...+...+.++|+|+|||||||||++++++|++. ++ +|++++|...
T Consensus 305 ~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~---~V~~l~r~~~ 351 (660)
T PRK08125 305 NSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY---EVYGLDIGSD 351 (660)
T ss_pred cccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc---EEEEEeCCch
Confidence 3446677889999999999999999999999986 45 7999998653
No 17
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.29 E-value=1.4e-06 Score=73.28 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++|+|+|||||||||++++++|++.++ +|++++|..
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~~~ 153 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDNFF 153 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeCCC
Confidence 3679999999999999999999999987 788888753
No 18
>PLN02427 UDP-apiose/xylose synthase
Probab=98.29 E-value=1e-06 Score=71.52 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=31.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~ 102 (121)
+.|+|+|||||||||++++++|++.+ + +|++++|+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~---~V~~l~r~~ 49 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH---KVLALDVYN 49 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC---EEEEEecCc
Confidence 45789999999999999999999984 5 799998864
No 19
>PLN02583 cinnamoyl-CoA reductase
Probab=98.29 E-value=1.7e-06 Score=68.06 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+|||||||||++++++|++.|+ +|++++|+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~R~~ 40 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAVQKN 40 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEEcCc
Confidence 57899999999999999999999988 799999964
No 20
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.29 E-value=1.2e-06 Score=69.89 Aligned_cols=35 Identities=31% Similarity=0.286 Sum_probs=31.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+||||+||||++++++|++.|+ +|++++|...
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~ 35 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLIRRSS 35 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEecCCc
Confidence 5899999999999999999999987 7999998753
No 21
>PLN02650 dihydroflavonol-4-reductase
Probab=98.27 E-value=1.3e-06 Score=69.82 Aligned_cols=38 Identities=34% Similarity=0.485 Sum_probs=33.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
..++|+||||+||||++++++|++.++ +|++++|+...
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~~r~~~~ 41 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPAN 41 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEEEcCcch
Confidence 357899999999999999999999987 79999987543
No 22
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.24 E-value=1.7e-06 Score=68.78 Aligned_cols=37 Identities=27% Similarity=0.215 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++++|+||||+||||++++++|++.|+ +|+++.|..
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~r~~ 40 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY---EVHGIIRRS 40 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEEeccc
Confidence 3578999999999999999999999987 798888864
No 23
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.24 E-value=1.5e-06 Score=72.90 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
....+++++|+||||+||||++++++|++.|+ +|++++|
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~d~ 79 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIVDN 79 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEec
Confidence 44567889999999999999999999999987 6888764
No 24
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.22 E-value=1.9e-06 Score=72.34 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=32.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.|+|+|||||||||++++++|++.|+ +|++++|..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ldr~~ 154 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVIDNFF 154 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 357999999999999999999999987 799998853
No 25
>PLN02214 cinnamoyl-CoA reductase
Probab=98.22 E-value=2.1e-06 Score=69.09 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.++++|+||||+||||++++++|++.|+ +|++++|+..
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~ 45 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY---TVKGTVRNPD 45 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCch
Confidence 4678999999999999999999999987 7999999754
No 26
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.20 E-value=2.3e-06 Score=66.00 Aligned_cols=35 Identities=46% Similarity=0.702 Sum_probs=31.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.|+|||||||||++++++|++.|+ +|+++.|....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~r~~~~ 36 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLDRLRDG 36 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC---eEEEEeCCCcc
Confidence 499999999999999999999988 79999996543
No 27
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.15 E-value=3.3e-06 Score=68.84 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=32.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|+|+|||||||||++++++|++.|+ +|+++.|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEEecc
Confidence 678999999999999999999999987 799998853
No 28
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.15 E-value=3.9e-06 Score=66.08 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=33.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+|+|+||||+||||++++++|++.|+ +|++++|+...
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~~r~~~~ 41 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY---TINATVRDPKD 41 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCCcc
Confidence 368999999999999999999999987 68888887543
No 29
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.14 E-value=3.6e-06 Score=60.92 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=31.4
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+|+||||++|+.++++|++.++ +|++++|++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~---~V~~~~R~~~~ 34 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH---EVTALVRSPSK 34 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS---EEEEEESSGGG
T ss_pred eEEECCCChHHHHHHHHHHHCCC---EEEEEecCchh
Confidence 79999999999999999999986 89999998664
No 30
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.14 E-value=3.9e-06 Score=67.26 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.3
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++|+||||+||||++++++|++.|+ +|++++|+.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~~r~~ 44 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY---TVHATLRDP 44 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCh
Confidence 567999999999999999999999987 788888864
No 31
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=98.14 E-value=6.1e-06 Score=61.19 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=31.1
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~ 105 (121)
|+|||||||||++++++|++.++ .|+.+.|.....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~---~v~~~~~~~~~~ 35 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH---EVIVLSRSSNSE 35 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT---EEEEEESCSTGG
T ss_pred EEEEccCCHHHHHHHHHHHHcCC---cccccccccccc
Confidence 79999999999999999999987 688888876653
No 32
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.13 E-value=3e-06 Score=64.87 Aligned_cols=34 Identities=32% Similarity=0.703 Sum_probs=30.8
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+||||+||||++++++|++.++ +|++++|+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~ 34 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH---EVTILTRSPPA 34 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC---EEEEEeCCCCC
Confidence 68999999999999999999987 79999997654
No 33
>KOG1429|consensus
Probab=98.12 E-value=3.7e-06 Score=68.58 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=33.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+++|+||||+|||||||++.|+..++ .|++++-...+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh---~VIa~Dn~ftg 63 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH---EVIALDNYFTG 63 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC---eEEEEeccccc
Confidence 458999999999999999999999986 79999876544
No 34
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.12 E-value=3.8e-06 Score=67.05 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=29.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~ 102 (121)
|+|+|||||||||++++++|++. ++ +|+++.|+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~---~V~~~~r~~ 36 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW---EVYGMDMQT 36 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC---eEEEEeCcH
Confidence 58999999999999999999986 45 799998853
No 35
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=98.10 E-value=8.2e-06 Score=62.84 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=35.5
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~ 116 (121)
+|+|||||||||++++++|++.|+ +|+++.|........+.+.+.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~r~~~d~~~~~~~~~~~~ 47 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVALTSSQLDLTDPEALERLLR 47 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeCCcccCCCCHHHHHHHHH
Confidence 489999999999999999999987 79999996433322334444444
No 36
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=98.10 E-value=4.4e-06 Score=63.97 Aligned_cols=42 Identities=36% Similarity=0.362 Sum_probs=35.8
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..+..++++|+||||+|++|+.++++|++.++ +|+++.|+..
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~R~~~ 52 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGVRDVD 52 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEecCHH
Confidence 34455678999999999999999999999876 7999998753
No 37
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.10 E-value=3.4e-06 Score=68.27 Aligned_cols=35 Identities=40% Similarity=0.589 Sum_probs=30.2
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+||||+|+||+++|+||++.+|. +|++++|++..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~--~lil~d~~E~~ 35 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK--KLILFDRDENK 35 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S--EEEEEES-HHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC--eEEEeCCChhH
Confidence 799999999999999999999884 99999998544
No 38
>PLN02686 cinnamoyl-CoA reductase
Probab=98.08 E-value=5.2e-06 Score=67.61 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=33.6
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++|+|+||||+||||++++++|++.|+ +|++++|+.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~---~V~~~~r~~ 87 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY---SVRIAVDTQ 87 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 35689999999999999999999999987 688888864
No 39
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.08 E-value=4e-06 Score=63.52 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=32.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|+||||||++|+++|++|++.++ +|++++|++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~ 36 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEA 36 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHH
Confidence 5799999999999999999999977 89999998654
No 40
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.07 E-value=6e-06 Score=65.93 Aligned_cols=40 Identities=35% Similarity=0.646 Sum_probs=33.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++|+|+||||+||||++++++|++.+.. .+|+++.|+..
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~-~~V~~~~r~~~ 41 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDEL 41 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEEEcCChh
Confidence 57899999999999999999999998621 27888888643
No 41
>PLN02240 UDP-glucose 4-epimerase
Probab=98.07 E-value=7.5e-06 Score=64.91 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=32.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+|||||||+|++++++|++.++ +|+++.|..
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~~~~ 39 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY---KVVVIDNLD 39 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 4678999999999999999999999876 788888753
No 42
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=98.06 E-value=9.9e-06 Score=60.71 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=34.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+++++++||||+|+||.+++++|++.|+ +|+++.|+...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~~r~~~~ 41 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA---RVVVTDRNEEA 41 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence 5788999999999999999999999987 69999998643
No 43
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=98.05 E-value=8.6e-06 Score=60.91 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=34.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+|++|.+++++|++.|+ +|++++|+..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~~ 41 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICGD 41 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4678999999999999999999999987 7999999753
No 44
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=98.05 E-value=1.1e-05 Score=60.77 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=34.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+++++++||||+|+||++++++|++.|+ +|+++.|+...
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~~ 40 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDEA 40 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence 4678999999999999999999999987 79999997543
No 45
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=98.05 E-value=1.1e-05 Score=63.75 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+|+||||+||||++++++|++.+ +|+++.|.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~ 32 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVH 32 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEeccc
Confidence 579999999999999999999886 37788875
No 46
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.04 E-value=7.2e-06 Score=71.43 Aligned_cols=40 Identities=23% Similarity=0.540 Sum_probs=33.7
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++.|+|+|||||||||++++++|++.++. .+|+++.|.
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~ 41 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKL 41 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCC
Confidence 3567899999999999999999999998543 278888874
No 47
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=98.03 E-value=6.7e-06 Score=63.73 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+|+||||||++|++++++|++.+. +|++++|++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCcc
Confidence 489999999999999999999987 69999998653
No 48
>PRK12828 short chain dehydrogenase; Provisional
Probab=98.03 E-value=1.3e-05 Score=59.31 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~~ 42 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGAA 42 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCChH
Confidence 4689999999999999999999999987 7999999754
No 49
>PRK07806 short chain dehydrogenase; Provisional
Probab=98.03 E-value=1.7e-05 Score=59.77 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||.+++++|++.|+ +|+++.|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~---~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA---HVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 4678999999999999999999999987 688888864
No 50
>PLN02778 3,5-epimerase/4-reductase
Probab=98.02 E-value=1.9e-05 Score=62.61 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
.|+|+||||+||||++++++|++.|+ +|+...+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~---~V~~~~~ 41 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI---DFHYGSG 41 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC---EEEEecC
Confidence 47899999999999999999999987 5654433
No 51
>PRK06194 hypothetical protein; Provisional
Probab=98.00 E-value=1.5e-05 Score=61.43 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=33.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~~ 41 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQD 41 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence 4678999999999999999999999987 7888888643
No 52
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=98.00 E-value=1.6e-05 Score=60.02 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.|+ +|+++.|++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~---~v~~~~r~~~ 42 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA---AVAIADLNQD 42 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCChH
Confidence 4689999999999999999999999987 6888898763
No 53
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=98.00 E-value=9.4e-06 Score=66.94 Aligned_cols=39 Identities=33% Similarity=0.558 Sum_probs=34.6
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..++++|+|||||||||++++++|++.|+ +|++++|+..
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~R~~~ 95 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVAREKS 95 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEEechh
Confidence 35678999999999999999999999987 7999999754
No 54
>PRK09135 pteridine reductase; Provisional
Probab=97.99 E-value=1.2e-05 Score=60.02 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=32.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++++++||||+|+||++++++|++.++ +|+++.|..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~ 40 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRS 40 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence 568999999999999999999999987 789888863
No 55
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.98 E-value=9.6e-06 Score=63.41 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=26.4
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+||||+||||++++++|++.|+ +++++.|.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC---ceEEEecC
Confidence 79999999999999999999886 45565554
No 56
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.97 E-value=1.6e-05 Score=60.02 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=34.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++.+++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~ 40 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAE 40 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 45789999999999999999999999987 7999998753
No 57
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.96 E-value=8.5e-06 Score=65.91 Aligned_cols=35 Identities=29% Similarity=0.595 Sum_probs=32.0
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~ 105 (121)
|+|||||||||++|+.+|.+.++ +|++++|++...
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~ 35 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKA 35 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcch
Confidence 68999999999999999999988 799999987663
No 58
>PRK09186 flagellin modification protein A; Provisional
Probab=97.96 E-value=2e-05 Score=59.41 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++|+++||||+|.||.+++++|++.|+ +|+++.|+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~---~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG---IVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecChH
Confidence 5789999999999999999999999987 7888888754
No 59
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.95 E-value=1.6e-05 Score=59.69 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=33.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.++ +|+++.|+..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~---~v~~~~r~~~ 38 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFDLNRE 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHH
Confidence 4689999999999999999999999987 7888888753
No 60
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.93 E-value=1.5e-05 Score=59.09 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=33.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++|+||||+|++|++++++|++.|+ +|+++.|++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~v~~~~r~~~ 40 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGA---KVVIYDSNEE 40 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence 3568999999999999999999999987 6999999754
No 61
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.93 E-value=1.5e-05 Score=61.97 Aligned_cols=35 Identities=43% Similarity=0.681 Sum_probs=31.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+||||+||||+++++.|++.++ +|+++.|+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~ 35 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTS 35 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCc
Confidence 4799999999999999999999986 7999999654
No 62
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.93 E-value=1.9e-05 Score=58.66 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|++|++++++|++.|+ +|+++.|+..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~---~v~~~~~~~~ 40 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA---NVVINYASSE 40 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCch
Confidence 4678999999999999999999999987 6877777643
No 63
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.92 E-value=2e-05 Score=59.84 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=33.9
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~---~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA---RVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCch
Confidence 36789999999999999999999999987 688888864
No 64
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.92 E-value=2.1e-05 Score=59.15 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~ 41 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAE 41 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4678999999999999999999999987 7999999753
No 65
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.92 E-value=1.8e-05 Score=59.89 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.4
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..+++++++||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~r~~~ 46 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCDVSEA 46 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 446889999999999999999999999987 6999999753
No 66
>PRK05717 oxidoreductase; Validated
Probab=97.92 E-value=1.8e-05 Score=60.20 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=33.9
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|+||++++++|++.|. +|+++.|+.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCH
Confidence 56789999999999999999999999987 788887764
No 67
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.91 E-value=1.9e-05 Score=59.48 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+|+||.+++++|++.|+ +|+++.|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCch
Confidence 5789999999999999999999999987 788888864
No 68
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.90 E-value=2.1e-05 Score=61.95 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=29.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+|+|||||||||++++++|++.++ +|+++.|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~~~ 33 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVILDNL 33 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC---eEEEEecC
Confidence 5799999999999999999999987 68887764
No 69
>PRK08703 short chain dehydrogenase; Provisional
Probab=97.89 E-value=3.3e-05 Score=58.08 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~ 41 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQK 41 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChH
Confidence 5679999999999999999999999987 7999999764
No 70
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.89 E-value=2.7e-05 Score=58.86 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+++++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~---~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA---TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC---cEEEEeCCH
Confidence 456899999999999999999999999886 789999975
No 71
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.88 E-value=2.9e-05 Score=57.96 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+++++||||+|++|++++++|++.+. +|++++|++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCH
Confidence 3578999999999999999999999876 799999975
No 72
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.88 E-value=1.7e-05 Score=68.19 Aligned_cols=34 Identities=47% Similarity=0.781 Sum_probs=29.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHH--hCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLR--AIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~--~~~~~~~V~~l~R~~ 102 (121)
|+|+|||||||||++++++|++ .+. +|++++|+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~---~V~~l~R~~ 36 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA---TVHVLVRRQ 36 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC---EEEEEECcc
Confidence 5799999999999999999995 444 899999964
No 73
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.88 E-value=3e-05 Score=58.24 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=33.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~ 40 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDAE 40 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCHH
Confidence 4689999999999999999999999986 7899988753
No 74
>PRK06196 oxidoreductase; Provisional
Probab=97.88 E-value=2.7e-05 Score=61.53 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~~R~~~ 61 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA---HVIVPARRPD 61 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4679999999999999999999999987 7999999753
No 75
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.87 E-value=2.5e-05 Score=59.42 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=34.6
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++|+||||+|+||.++++++++.|+ +|+++.|+..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~ 42 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPE 42 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 36789999999999999999999999987 7898988643
No 76
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.87 E-value=2.6e-05 Score=59.13 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++|+++||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~~ 45 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDPA 45 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7889998753
No 77
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.87 E-value=4.3e-05 Score=56.68 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++.++|+||||+|+||++++++|++.|+ +|+++.|..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~---~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA---DVVVHYRSD 40 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 3568999999999999999999999987 577766654
No 78
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=1.7e-05 Score=64.83 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=29.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++||||||.||||||.+.+|++.|+ +|++++.-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~---~vvV~DNL 33 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH---EVVVLDNL 33 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC---eEEEEecC
Confidence 5899999999999999999999998 68888763
No 79
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.86 E-value=2.6e-05 Score=61.23 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~---~vi~~~r~~~ 51 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA---HVVLAVRNLD 51 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4789999999999999999999999987 7888999743
No 80
>PLN00016 RNA-binding protein; Provisional
Probab=97.86 E-value=1.9e-05 Score=64.18 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=33.4
Q ss_pred cCCeEEEE----cCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVT----GGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVT----GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..++|+|| |||||||++++++|++.|+ +|++++|+..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~ 91 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKE 91 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCc
Confidence 44789999 9999999999999999987 7999999754
No 81
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.85 E-value=1.6e-05 Score=63.04 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=30.1
Q ss_pred EEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 69 FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 69 lVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+||||+||+|++|+++|+++++ ..+|.+++|....
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~ 35 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPP 35 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEccccccc
Confidence 6999999999999999999985 3589999886543
No 82
>PRK08628 short chain dehydrogenase; Provisional
Probab=97.84 E-value=3.8e-05 Score=58.27 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+...
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~---~v~~~~r~~~~ 43 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA---IPVIFGRSAPD 43 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC---cEEEEcCChhh
Confidence 5789999999999999999999999987 68888887654
No 83
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.83 E-value=3e-05 Score=61.75 Aligned_cols=34 Identities=24% Similarity=0.590 Sum_probs=27.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|+|||||||||++++++|++.++. .++++.|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~--~v~~~~~~ 35 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD--AVVVVDKL 35 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC--EEEEEecC
Confidence 58999999999999999999999863 34445543
No 84
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.83 E-value=3e-05 Score=58.26 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++||||+|+||++++++|++.|+ +|+++.|+..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~r~~~ 36 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA---NVVVNDLGEA 36 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 46899999999999999999999987 7999999743
No 85
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.83 E-value=5.5e-05 Score=56.47 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|+||.+++++|++.++ +|+++.|.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~---~v~~~~~~ 39 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA---DVIVLDIH 39 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEcCc
Confidence 4678999999999999999999999987 67777764
No 86
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.83 E-value=3.9e-05 Score=58.86 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.|+ +|+++.|+..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~~ 42 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNPD 42 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence 5789999999999999999999999987 7999998743
No 87
>PRK07035 short chain dehydrogenase; Provisional
Probab=97.83 E-value=4.2e-05 Score=57.79 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~---~Vi~~~r~~~ 43 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA---HVIVSSRKLD 43 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7999998643
No 88
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.83 E-value=2.9e-05 Score=59.65 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=33.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++++||||+|++|++++++|++.|+ +|++++|+...
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~ 39 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPEK 39 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHHH
Confidence 568899999999999999999999987 79999987543
No 89
>PRK06949 short chain dehydrogenase; Provisional
Probab=97.81 E-value=4.1e-05 Score=57.81 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||+|+||++++++|++.+. +|+++.|+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~ 44 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVE 44 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999886 7999999753
No 90
>PRK06523 short chain dehydrogenase; Provisional
Probab=97.80 E-value=3.3e-05 Score=58.67 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=34.2
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|.||++++++|++.|. +|+++.|+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCCh
Confidence 46789999999999999999999999987 799999864
No 91
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.80 E-value=3.8e-05 Score=57.59 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||++++++|++.|. +|+++.|+.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~ 40 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDP 40 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCH
Confidence 4678999999999999999999999987 688888864
No 92
>PRK07577 short chain dehydrogenase; Provisional
Probab=97.80 E-value=4.6e-05 Score=56.75 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=33.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~~r~~~ 38 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH---QVIGIARSAI 38 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence 578999999999999999999999987 7999998643
No 93
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.80 E-value=4.2e-05 Score=58.16 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||+++++.|++.|+ +|+++.|+.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~ 46 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKA 46 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 4789999999999999999999999887 788888864
No 94
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.80 E-value=5.2e-05 Score=57.33 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~ 42 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA---KVVVADRDAA 42 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 5789999999999999999999999986 7999999754
No 95
>PRK08264 short chain dehydrogenase; Validated
Probab=97.79 E-value=3.8e-05 Score=57.49 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=33.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||+|+||++++++|++.|.. +|+++.|+..
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~--~V~~~~r~~~ 42 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAA--KVYAAARDPE 42 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcc--cEEEEecChh
Confidence 46789999999999999999999999863 6899998654
No 96
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.79 E-value=4.3e-05 Score=58.56 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=33.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~ 44 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTE 44 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5789999999999999999999999987 799999974
No 97
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.79 E-value=3.2e-05 Score=61.51 Aligned_cols=33 Identities=24% Similarity=0.586 Sum_probs=27.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
|+|+|||||||||++++++|++.+.. .|+++.|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~ 33 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDK 33 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecC
Confidence 57999999999999999999998763 4555544
No 98
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.79 E-value=4.5e-05 Score=56.93 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=33.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+|+||+++++.|++.|. +|+++.|+..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4678999999999999999999999987 7999999753
No 99
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.78 E-value=5.6e-05 Score=56.68 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=33.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|. +|++++|+..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~ 42 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEE 42 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4578999999999999999999999887 7999999753
No 100
>PRK12320 hypothetical protein; Provisional
Probab=97.77 E-value=3.4e-05 Score=68.77 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+|+||||+||||++++++|++.|+ +|++++|..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~ 34 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHP 34 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCh
Confidence 5799999999999999999999987 799999853
No 101
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.77 E-value=5.4e-05 Score=60.20 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=34.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|++..|+..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~---~Vil~~R~~~ 49 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA---EVILPVRNRA 49 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7999999754
No 102
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.77 E-value=5e-05 Score=58.79 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=33.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 41 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA---NIVIAAKTAE 41 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecccc
Confidence 4678999999999999999999999987 7899998654
No 103
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.77 E-value=4.7e-05 Score=58.86 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=32.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~ 39 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSEA 39 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCHH
Confidence 467899999999999999999999987 7999999653
No 104
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.77 E-value=6.6e-05 Score=56.18 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=33.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||++++++|++.|+ +|+++.|+..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~ 42 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAA 42 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 5689999999999999999999999987 6888888643
No 105
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.76 E-value=6.8e-05 Score=57.02 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~~ 42 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDAA 42 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7888998643
No 106
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.76 E-value=5e-05 Score=57.67 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=33.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~ 41 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPA 41 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHH
Confidence 5678999999999999999999999987 7888888754
No 107
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.76 E-value=5.3e-05 Score=57.17 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++||||+|.||.+++++|++.|. +|++++|+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~~r~~ 36 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH---NVIAGVQIA 36 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 57899999999999999999999987 789999964
No 108
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.76 E-value=5.2e-05 Score=58.26 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++++||||+|+||++++++|++.|. +|+++.|+.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~ 36 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD---RVAATVRRP 36 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 36899999999999999999999987 799999864
No 109
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.75 E-value=6.4e-05 Score=57.21 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~ 48 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA---DIIITTHG 48 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence 5789999999999999999999999987 68888887
No 110
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.75 E-value=6.4e-05 Score=57.05 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|+ +|++..|+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 44 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA---QVAIAARHLD 44 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence 5789999999999999999999999987 7888888743
No 111
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.75 E-value=5.6e-05 Score=57.09 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~ 50 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSED 50 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7889998753
No 112
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.75 E-value=5e-05 Score=58.05 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=32.8
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~~ 39 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNPA 39 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence 467899999999999999999999987 7999999743
No 113
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.75 E-value=4.9e-05 Score=57.68 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|.||.+++++|++.+. +|+++.|+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~---~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA---TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCh
Confidence 5789999999999999999999999987 688888864
No 114
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.74 E-value=5.8e-05 Score=56.69 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=31.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|+||++++++|++.++ +|++..|.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~---~v~~~~~~ 39 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGS---LVVVNAKK 39 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence 3578999999999999999999999887 57666664
No 115
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.74 E-value=5.8e-05 Score=57.68 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=33.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4689999999999999999999999987 788888864
No 116
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.74 E-value=5.5e-05 Score=57.11 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=30.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~ 102 (121)
+++++++||||+|+||++++++|++.|+ +|.++ .|+.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~---~v~i~~~r~~ 41 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGA---LVAIHYGRNK 41 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence 4678999999999999999999999987 56554 5653
No 117
>PRK09072 short chain dehydrogenase; Provisional
Probab=97.73 E-value=6.2e-05 Score=57.47 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=33.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||.+++++|++.|+ +|+++.|+.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~---~V~~~~r~~ 39 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA---RLLLVGRNA 39 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCH
Confidence 3678999999999999999999999987 799999974
No 118
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.73 E-value=4e-05 Score=60.65 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=36.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~ 116 (121)
|+|+||||+|++|+++.++|...+. .+++..|..-.....+.+.+++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~---~v~~~~r~~~dl~d~~~~~~~~~ 48 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY---EVIATSRSDLDLTDPEAVAKLLE 48 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE---EEEEESTTCS-TTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC---EEEEeCchhcCCCCHHHHHHHHH
Confidence 6899999999999999999998765 68888887544433444554443
No 119
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.73 E-value=7.7e-05 Score=56.53 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~ 41 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQA 41 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4688999999999999999999999987 7999999754
No 120
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.73 E-value=5.5e-05 Score=55.86 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.|+++||||+|++|++++++|++. + +|+++.|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~~ 37 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGGRPAE 37 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCHH
Confidence 478999999999999999999998 6 6999999743
No 121
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.73 E-value=6.1e-05 Score=56.82 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+|+++||||+|+||++++++|++.++ +|+++.|..
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~---~vi~~~r~~ 36 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF---DLAINDRPD 36 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecCc
Confidence 47899999999999999999999987 688888864
No 122
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.73 E-value=6.4e-05 Score=57.97 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=32.8
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++|+||||+|+||++++++|++.+. +|+++.|+..
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~~ 38 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGD---RVVATARDTA 38 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 467999999999999999999999986 7999999743
No 123
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.72 E-value=6.2e-05 Score=57.21 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=33.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+++++||||+|+||++++++|++.|. +|+++.|+.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~---~Vv~~~r~~ 40 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA---NLILLDISP 40 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCH
Confidence 4679999999999999999999999987 688888874
No 124
>PRK06398 aldose dehydrogenase; Validated
Probab=97.72 E-value=6.9e-05 Score=57.45 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|+ +|+++.|+..
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~---~Vi~~~r~~~ 41 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS---NVINFDIKEP 41 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCcc
Confidence 5789999999999999999999999987 6888888643
No 125
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=97.72 E-value=6.5e-05 Score=56.53 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=33.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||++++++|++.|+ +|+++.|+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecch
Confidence 5789999999999999999999999987 788888764
No 126
>PRK06182 short chain dehydrogenase; Validated
Probab=97.72 E-value=6.6e-05 Score=57.72 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++++||||+|+||.+++++|++.|+ +|+++.|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 578999999999999999999999987 7999999753
No 127
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.71 E-value=6.8e-05 Score=59.35 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=33.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~~ 41 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW---HVIMACRNLK 41 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 578999999999999999999999986 7898998643
No 128
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.70 E-value=7.9e-05 Score=58.03 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=33.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||++++++|++.|. +|++..|+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~---~Vv~~~r~~ 40 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA---RVVLGDVDK 40 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5789999999999999999999999987 688888874
No 129
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.70 E-value=4.6e-05 Score=59.15 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=28.3
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+|||||||||++++++|++.++. .|+++.|..
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~ 33 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLR 33 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCC
Confidence 689999999999999999999863 577777654
No 130
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.70 E-value=9.1e-05 Score=56.15 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=33.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||+|.||.+++++|++.|. +|++..|+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~---~vvl~~r~~~ 44 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA---EIIINDITAE 44 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCHH
Confidence 4689999999999999999999999987 7888888743
No 131
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.70 E-value=7.8e-05 Score=58.76 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=34.2
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~ 74 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARRE 74 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence 35779999999999999999999999987 799999975
No 132
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.69 E-value=7.2e-05 Score=56.34 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=32.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||+|+||.++++.|++.|. +|++++|+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~~r~~~ 36 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA---RLYLAARDVE 36 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCCHH
Confidence 6899999999999999999999987 7999999754
No 133
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.69 E-value=0.0001 Score=56.16 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=34.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~---~V~~~~r~~~ 43 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA---SVAICGRDEE 43 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence 5789999999999999999999999987 6999999754
No 134
>PRK08643 acetoin reductase; Validated
Probab=97.67 E-value=0.00012 Score=55.52 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+|+++||||+|+||.+++++|++.|+ +|+++.|+..
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~---~v~~~~r~~~ 37 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF---KVAIVDYNEE 37 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 68999999999999999999999987 7899998753
No 135
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.67 E-value=8.2e-05 Score=68.97 Aligned_cols=48 Identities=35% Similarity=0.560 Sum_probs=37.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecCCCCccHHHHHH
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRPKKGKAVQERLE 112 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~~~~~~~~~r~~ 112 (121)
.++|+|||||||+|++++++|++.+. ...+|++++|........+++.
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~ 1019 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLR 1019 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHH
Confidence 47899999999999999999998861 1248999999866544444543
No 136
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.67 E-value=6.7e-05 Score=65.66 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=36.0
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+..++++|+||||+|+||++++++|++.|+ +|++++|+...
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF---RVRAGVRSAQR 116 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence 445789999999999999999999999987 79999997543
No 137
>PRK06114 short chain dehydrogenase; Provisional
Probab=97.66 E-value=0.00018 Score=54.77 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~~r~~~ 43 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA---DVALFDLRTD 43 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence 5789999999999999999999999987 7888888643
No 138
>PRK06128 oxidoreductase; Provisional
Probab=97.66 E-value=0.00013 Score=57.32 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=32.6
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++|+++||||+|+||.+++++|++.|. +|++..|+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~i~~~~~ 89 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGA---DIALNYLPE 89 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCC---EEEEEeCCc
Confidence 36789999999999999999999999987 577666653
No 139
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.66 E-value=6.3e-05 Score=58.15 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEcCCChHHHHHHHHHHHhCCC
Q psy3445 69 FVTGGTGFMGKILVEKLLRAIPH 91 (121)
Q Consensus 69 lVTGatGfIGs~ll~~Ll~~~~~ 91 (121)
+|||||||||++++++|++.++.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~ 23 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFT 23 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCc
Confidence 69999999999999999998873
No 140
>PLN02253 xanthoxin dehydrogenase
Probab=97.66 E-value=9.1e-05 Score=57.03 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=33.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|+||.+++++|++.|. +|+++.|..
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~ 52 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQD 52 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 46789999999999999999999999987 788888864
No 141
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.66 E-value=0.00016 Score=56.75 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=34.7
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+++++++||||+|+||.+++++|++.|. +|+++.|..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~---~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA---DIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 466789999999999999999999999987 788888864
No 142
>PRK08589 short chain dehydrogenase; Validated
Probab=97.66 E-value=8.7e-05 Score=57.32 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=33.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~---~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA---YVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence 5689999999999999999999999987 79999987
No 143
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.65 E-value=9.5e-05 Score=56.72 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|++..|+..
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~---~v~~~~r~~~ 40 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA---RVAIGDLDEA 40 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 4578999999999999999999999987 6888888643
No 144
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.65 E-value=0.00013 Score=56.01 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 41 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDAD 41 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4689999999999999999999999987 7999999753
No 145
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.65 E-value=9.1e-05 Score=55.23 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=32.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~ 102 (121)
+.+++++||||+|+||++++++|++.++ +|+++ .|+.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~---~v~~~~~r~~ 40 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA---KVVIAYDINE 40 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence 4678999999999999999999999877 67777 7764
No 146
>PRK07023 short chain dehydrogenase; Provisional
Probab=97.65 E-value=8.7e-05 Score=55.90 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=31.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~---~v~~~~r~~~ 36 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGI---AVLGVARSRH 36 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCC---EEEEEecCcc
Confidence 5899999999999999999999987 6888888643
No 147
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.64 E-value=8.5e-05 Score=56.33 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=31.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||+|+||.+++++|++.|+ +|+++.|++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~ 35 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQE 35 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 5799999999999999999999987 7999999753
No 148
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.64 E-value=0.0001 Score=55.11 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||.++++.|++.++ +|+++.|+.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~ 43 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNA 43 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5788999999999999999999999987 799999974
No 149
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.64 E-value=0.0001 Score=55.85 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++||||+|+||.+++++|++.|. +|++++|+..
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~ 37 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAA 37 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 57899999999999999999999886 7999999753
No 150
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.64 E-value=6.9e-05 Score=57.74 Aligned_cols=34 Identities=32% Similarity=0.656 Sum_probs=28.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+|||||||||++++++|++.++. .+|+++.|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~ 34 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKL 34 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 5899999999999999999998742 268888763
No 151
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=97.64 E-value=0.00013 Score=56.19 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~ 44 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQ 44 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4789999999999999999999999987 788999874
No 152
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=97.63 E-value=0.00011 Score=56.16 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|+ +|+++.|+..
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 41 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA---RVAVLERSAE 41 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 6888998743
No 153
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=97.63 E-value=0.00012 Score=55.91 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~---~v~~~~~~~ 43 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA---NVVNADIHG 43 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 35789999999999999999999999987 688877764
No 154
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.63 E-value=0.00011 Score=54.88 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||.++++.|++.++ +|+++.|+.
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~---~v~~~~r~~ 39 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGA---QVYGVDKQD 39 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 5789999999999999999999999987 688888864
No 155
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.62 E-value=0.00011 Score=55.54 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||++++++|++.|. +|+++.|+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~---~v~~~~r~~ 45 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA---HVLVNGRNA 45 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 5789999999999999999999999886 799999974
No 156
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.00013 Score=56.45 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=34.6
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+++++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGA---KVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEECCc
Confidence 346789999999999999999999999987 788888865
No 157
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.00011 Score=55.59 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=31.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~---~V~~~~r~~ 35 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW---QVIACGRNQ 35 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC---EEEEEECCH
Confidence 6799999999999999999999987 799999964
No 158
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.62 E-value=0.00011 Score=54.75 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|+||++++++|++.+. .|++..|+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~~ 40 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTRV 40 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 4678999999999999999999999986 677777753
No 159
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.00012 Score=55.05 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++||||+|.||.+++++|++.+. +|+++.|+..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~~ 37 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR---DLALCARRTD 37 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 57899999999999999999999976 7888898753
No 160
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=97.62 E-value=0.00011 Score=55.25 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=30.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEE-EecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL-LVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~-l~R~~ 102 (121)
+.+++++||||+|+||.+++++|++.|+ +|++ ..|+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~---~v~~~~~r~~ 39 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGY---DIAVNYARSR 39 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence 3578999999999999999999999987 4554 56654
No 161
>PRK08177 short chain dehydrogenase; Provisional
Probab=97.62 E-value=0.00012 Score=54.78 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=32.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++||||+|++|++++++|++.|+ +|+++.|+...
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~ 37 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW---QVTATVRGPQQ 37 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC---EEEEEeCCCcc
Confidence 6799999999999999999999987 79999997654
No 162
>PRK12742 oxidoreductase; Provisional
Probab=97.61 E-value=0.00011 Score=54.74 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=31.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++|+||||+|.||.+++++|++.|. +|++..|.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~---~v~~~~~~ 39 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA---NVRFTYAG 39 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCC
Confidence 4689999999999999999999999987 57766653
No 163
>PRK09242 tropinone reductase; Provisional
Probab=97.61 E-value=0.00014 Score=55.18 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=33.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+|.||.+++++|++.|+ +|+++.|+.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~~r~~ 43 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA---DVLIVARDA 43 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 5789999999999999999999999987 799999874
No 164
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.61 E-value=0.00012 Score=55.06 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=30.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++++++||||+|+||+++++.|++.|+ +|++..|
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~---~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGA---RVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC---eEEEEcC
Confidence 4678999999999999999999999987 5666554
No 165
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.60 E-value=9.2e-05 Score=56.30 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=31.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~ 36 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW---RVGAYDINEA 36 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence 6799999999999999999999987 7999998754
No 166
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.60 E-value=0.00012 Score=54.73 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|+||++++++|++.++ +++++.|+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~---~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF---AVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCC
Confidence 4679999999999999999999999987 56666664
No 167
>PRK07775 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.00013 Score=56.42 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=32.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~---~V~~~~r~~ 44 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF---PVALGARRV 44 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 3557999999999999999999999987 688888864
No 168
>PRK08017 oxidoreductase; Provisional
Probab=97.59 E-value=0.00013 Score=55.04 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=31.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++||||+|+||.++++.|++.|. +|+++.|+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~~r~~~ 37 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY---RVLAACRKPD 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 6899999999999999999999987 7888898753
No 169
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.00013 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=32.8
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++|+||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~~ 39 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW---RVFATCRKEE 39 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 367899999999999999999999987 7999999753
No 170
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.00013 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+++||||+|+||++++++|++.|+ +|+++.|..
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT---HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC---EEEEEeCCc
Confidence 5799999999999999999999987 788899875
No 171
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.00014 Score=54.64 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=33.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.++++||||+|.+|.+++++|++.|. +|+++.|+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~ 41 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW---DLALVARSQD 41 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 457899999999999999999999987 7999999753
No 172
>PRK09134 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.00013 Score=55.55 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+|+++||||+|+||.+++++|++.|. +|+++.|.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~---~v~~~~~~ 42 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF---DVAVHYNR 42 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 578999999999999999999999886 57666653
No 173
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.00014 Score=55.94 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~---~V~~~~r~~~ 44 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA---NVAVASRSQE 44 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 6999998743
No 174
>PRK12747 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.00013 Score=55.15 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=30.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++|+++||||+|+||.+++++|++.|. +|++..+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~---~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEcC
Confidence 5689999999999999999999999987 5766543
No 175
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.58 E-value=0.00014 Score=55.11 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=32.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++||||+|+||+++++.|++.++ +|+++.|+..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~---~vi~~~r~~~ 37 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY---RVAVADINSE 37 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 57899999999999999999999987 7888888754
No 176
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.57 E-value=0.00014 Score=55.30 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++||||+|+||.+++++|++.++ +|++++|+.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~ 35 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA---QLVLAARNE 35 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 46899999999999999999999886 799999874
No 177
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.57 E-value=0.00015 Score=55.29 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++|+||||+|+||.+++++|++.|+ +|++++|+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA---TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 47899999999999999999999987 789999864
No 178
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=97.56 E-value=0.00015 Score=55.07 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=33.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~---~vv~~~r~~ 45 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA 45 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 5789999999999999999999999987 688888864
No 179
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.56 E-value=0.00016 Score=55.63 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=33.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..+++|+||||+|.||.+++++|++.+.. +|+++.|+..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~ 44 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDD 44 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcc
Confidence 35789999999999999999999998522 7999999765
No 180
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.56 E-value=6.4e-05 Score=58.01 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=35.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccH
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAV 107 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~ 107 (121)
|+|.|.||+|-+|++|++..+++|+ +|++++|++.+..+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEeChHhccc
Confidence 6899999999999999999999998 79999999776543
No 181
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.55 E-value=0.00027 Score=53.15 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++++++||||+|+||++++++|++.+. +|+++.+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~---~v~~~~~ 38 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGA---KVVINYN 38 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEcC
Confidence 4679999999999999999999999987 5665544
No 182
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.00019 Score=55.02 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=31.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||+|.||.+++++|++.+. +|++..|+..
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~---~V~~~~r~~~ 35 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW---RLALADVNEE 35 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4799999999999999999999987 7888888753
No 183
>PRK07985 oxidoreductase; Provisional
Probab=97.54 E-value=0.00026 Score=55.76 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=32.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|.||.+++++|++.|. +|++..|+.
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~---~Vi~~~~~~ 83 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA---DVAISYLPV 83 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEecCCc
Confidence 6789999999999999999999999987 677777654
No 184
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=97.54 E-value=0.00022 Score=54.56 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=33.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~~ 45 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQE 45 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence 4679999999999999999999999987 6888888653
No 185
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.00018 Score=55.47 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++|+++||||+|.||.+++++|++.|. +|++..|+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~---~V~~~~r~~~ 43 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA---DVILLSRNEE 43 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7888898743
No 186
>PRK12744 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.00026 Score=53.87 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=30.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|+||.+++++|++.|. +|+++.+.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~---~vv~i~~~ 41 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA---KAVAIHYN 41 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---cEEEEecC
Confidence 4679999999999999999999999987 55666553
No 187
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.00016 Score=55.62 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY---EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 6899999999999999999999987 799999874
No 188
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.00019 Score=54.38 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=34.5
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++++||||+|.||++++++|++.|.. .|+++.|+..
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~ 42 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAE 42 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHH
Confidence 367899999999999999999999999872 4999998743
No 189
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=97.51 E-value=0.00033 Score=53.40 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=32.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++||||+|.||.+++++|++.+. +|++..|+.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~---~vvi~~~~~ 41 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA---KVVINYRSD 41 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 5789999999999999999999999986 677777743
No 190
>KOG1371|consensus
Probab=97.51 E-value=0.00017 Score=59.46 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC-CCCccHHHHHHHHhh
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP-KKGKAVQERLEAIFE 116 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~-~~~~~~~~r~~e~~~ 116 (121)
+++|+||||.||||+|.+-+|++.|+ .|++++.- .....+..|+.+++.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy---~v~~vDNl~n~~~~sl~r~~~l~~ 51 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY---GVVIVDNLNNSYLESLKRVRQLLG 51 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC---cEEEEecccccchhHHHHHHHhcC
Confidence 57899999999999999999999998 57776642 112223445554443
No 191
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.47 E-value=0.00019 Score=55.38 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+||||||+||++++++|++.++ +|+++.|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~~~~ 32 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH---EVVVLDNL 32 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC---eEEEEeCC
Confidence 589999999999999999999987 67776653
No 192
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.47 E-value=0.00024 Score=53.92 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=31.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++|+++||||+|.||.+++++|++.|+ +|+++.|.
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~---~v~~~~~~ 40 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGA---KVAVLYNS 40 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence 5689999999999999999999999987 67776664
No 193
>PRK07109 short chain dehydrogenase; Provisional
Probab=97.46 E-value=0.00026 Score=57.02 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++|+||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~~ 43 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGEE 43 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 5678999999999999999999999987 7999999743
No 194
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.00033 Score=57.48 Aligned_cols=34 Identities=35% Similarity=0.683 Sum_probs=29.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
|+++||||.||||+++++.+++..++ .+|+.++.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~Dk 34 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDK 34 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEec
Confidence 57999999999999999999999886 45777776
No 195
>PRK12743 oxidoreductase; Provisional
Probab=97.45 E-value=0.00044 Score=52.65 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=29.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++||||+|.||.+++++|++.|. +|+++.|.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~---~V~~~~~~ 35 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF---DIGITWHS 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence 57899999999999999999999987 67777654
No 196
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.45 E-value=0.00014 Score=54.88 Aligned_cols=33 Identities=39% Similarity=0.491 Sum_probs=30.0
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+||||.+|+++++.|++.+. +|.+++|+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~---~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF---SVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG---CEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhCCC---CcEEEEeccc
Confidence 79999999999999999999765 7999999873
No 197
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.45 E-value=0.00038 Score=48.47 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=32.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC-CCccHH
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK-KGKAVQ 108 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~-~~~~~~ 108 (121)
+|.|.||||++|+.+++.|.++ |.+..+.++.|+. .+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~ 42 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLS 42 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHH
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeee
Confidence 6899999999999999999995 7776777777776 444433
No 198
>PRK06483 dihydromonapterin reductase; Provisional
Probab=97.44 E-value=0.00029 Score=52.84 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+|+++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 37 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ---PVIVSYRTHY 37 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCch
Confidence 57899999999999999999999987 7888998753
No 199
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.44 E-value=0.00029 Score=52.68 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|+||.++++.|++.|. +|+++.|+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5688999999999999999999999886 7888888753
No 200
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=97.44 E-value=0.00025 Score=54.18 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.1
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++|+++||||++.||.+++++|++.|. +|++..|.
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~ 41 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV---NIAFTYNS 41 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence 46789999999999999999999999987 57776653
No 201
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=97.43 E-value=0.00027 Score=53.04 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=29.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++|+++||||+|+||.+++++|++.|. +|++..+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~---~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGF---KVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcC
Confidence 3578999999999999999999999987 5666443
No 202
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0003 Score=55.28 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~ 44 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEEA 44 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 5789999999999999999999999987 7999998643
No 203
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.42 E-value=0.00026 Score=54.08 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=32.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++|+++||||+|.||.+++++|++.|. +|+++.|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~---~vv~~~~~ 41 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA---DIVGVGVA 41 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence 5689999999999999999999999987 68877775
No 204
>PRK07677 short chain dehydrogenase; Provisional
Probab=97.40 E-value=0.00031 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=32.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+|+++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~---~Vi~~~r~~~ 36 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA---NVVITGRTKE 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 57899999999999999999999987 7999998753
No 205
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.39 E-value=0.00027 Score=53.68 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+| .||.+++++|++.|. +|+++.|+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~---~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI---DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC---cEEEEcCC
Confidence 4678999999996 599999999999987 68888886
No 206
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=97.39 E-value=0.00045 Score=47.94 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=31.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++||||+|++|.+++++|++.+.. .|+++.|+...
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~--~v~~~~r~~~~ 37 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGAR--HLVLLSRSGPD 37 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCC--eEEEEeCCCCC
Confidence 47899999999999999999998753 68888886543
No 207
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.38 E-value=0.0003 Score=56.45 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=33.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.|+.++||||+|.||.+++++|++.|. +|+++.|+...
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~---~Vil~~R~~~~ 89 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL---NLVLVARNPDK 89 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC---CEEEEECCHHH
Confidence 378999999999999999999999987 69999997543
No 208
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.38 E-value=0.0003 Score=59.12 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=33.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~r~~ 212 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA---KVVALTSNS 212 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4689999999999999999999999987 788888864
No 209
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.37 E-value=0.00033 Score=56.05 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.9
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
...+++++||||++=||.+++++|+++|+ .|+++.|+.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~~~k 42 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY---NLILVARREDK 42 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCcHHH
Confidence 35678999999999999999999999998 79999998654
No 210
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=97.37 E-value=0.00034 Score=52.08 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=29.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
|+++||||+|+||.+++++|++.|+ +|+++.|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r 32 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY---RVAANCG 32 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence 5799999999999999999999987 6888887
No 211
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.37 E-value=0.00061 Score=53.89 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++++++||||+|+||.+++++|++.|. +|++..|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga---~Vv~~~~~ 45 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA---TVVVNDVA 45 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCC
Confidence 46889999999999999999999999987 67777774
No 212
>PRK07831 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.00052 Score=52.30 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=33.8
Q ss_pred hhhcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 61 EFFRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 61 ~~~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..+++++++||||+|+ ||..++++|++.|. +|++..|+..
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~---~V~~~~~~~~ 53 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA---RVVISDIHER 53 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 3557899999999985 99999999999987 6888888643
No 213
>PRK06125 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.00047 Score=52.45 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~~r~~~ 42 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC---HLHLVARDAD 42 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 4689999999999999999999999877 7999999753
No 214
>PRK06953 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.00035 Score=52.09 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=31.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~---~v~~~~r~~~ 36 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW---RVIATARDAA 36 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC---EEEEEECCHH
Confidence 5799999999999999999999886 7888888743
No 215
>PRK05865 hypothetical protein; Provisional
Probab=97.35 E-value=0.00029 Score=64.16 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=30.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+|+||||+||||++++++|++.|+ +|++++|+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R~~ 34 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIARHR 34 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCc
Confidence 5799999999999999999999987 799999863
No 216
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=97.33 E-value=0.00042 Score=51.67 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~---~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY---RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCc
Confidence 5899999999999999999999886 799999874
No 217
>PRK06139 short chain dehydrogenase; Provisional
Probab=97.33 E-value=0.00043 Score=55.97 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~~R~~~ 42 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA---RLVLAARDEE 42 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 4679999999999999999999999987 7889999753
No 218
>PRK06123 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.00046 Score=51.78 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=27.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++++||||+|+||++++++|++.|. .|++..|
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~---~vv~~~~ 34 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY---AVCLNYL 34 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---eEEEecC
Confidence 57899999999999999999999986 4555543
No 219
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=97.32 E-value=0.00056 Score=51.50 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++++||||+|+||.+++++|++.|. +|+++.|+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~ 34 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF---AVAVADLNE 34 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5799999999999999999999986 788888864
No 220
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.00053 Score=52.74 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~---~vv~~~r~~ 34 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA---ELFLTDRDA 34 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5799999999999999999999886 688888864
No 221
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.00049 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|+..
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~---~V~~~~r~~~ 406 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA---TVFLVARNGE 406 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 5678999999999999999999999987 7999999753
No 222
>PRK09620 hypothetical protein; Provisional
Probab=97.26 E-value=0.00056 Score=53.31 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=30.1
Q ss_pred hcCCeEEEEcCC----------------ChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGT----------------GFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGat----------------GfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+.|++|+||+|. ||+|++++++|++.|+ +|+++.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga---~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA---HVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC---eEEEEeC
Confidence 478999999886 9999999999999998 5776664
No 223
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.25 E-value=0.00066 Score=51.76 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||+|.||..++++|++.|. +|+++.|+..
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~~ 35 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNEE 35 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 5799999999999999999999987 7899998753
No 224
>PRK07069 short chain dehydrogenase; Validated
Probab=97.24 E-value=0.00094 Score=50.07 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=29.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++||||+|+||.++++.|++.|. +|+++.|+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~---~v~~~~r~ 32 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA---KVFLTDIN 32 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence 389999999999999999999987 79999987
No 225
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.24 E-value=0.0005 Score=59.98 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPH 91 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~ 91 (121)
..|+|+||||+||||++++++|...+.+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~ 406 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIA 406 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCe
Confidence 4578999999999999999999988763
No 226
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=97.22 E-value=0.00062 Score=50.82 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=27.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~ 101 (121)
++++||||+|+||.+++++|++.|+ +|+++ .|+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~---~v~~~~~~~ 35 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY---TVAVNYQQN 35 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 5799999999999999999999987 56654 454
No 227
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=97.22 E-value=0.00066 Score=51.70 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++++||||+|.||.+++++|++.|. +|+++.|.
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~---~vv~~~~~ 43 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC---DIVGINIV 43 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence 6789999999999999999999999987 67777664
No 228
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=97.20 E-value=0.00083 Score=50.20 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=28.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+|+||||+|+||++++++|++.++.+ .|....|+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~ 35 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRH 35 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccC
Confidence 589999999999999999999986542 46655664
No 229
>KOG1430|consensus
Probab=97.19 E-value=0.00064 Score=56.63 Aligned_cols=39 Identities=36% Similarity=0.562 Sum_probs=33.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+..+++||||+||+|.|++.+|++.+. ..+|++++..+.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~ 41 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPT 41 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCcc
Confidence 456899999999999999999999974 248888888654
No 230
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=97.19 E-value=0.0011 Score=49.72 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=28.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
.++|+||||+|+||+.++++|++.+. +|++..+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~---~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW---SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeC
Confidence 36899999999999999999999987 5665543
No 231
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=97.17 E-value=0.00061 Score=50.49 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=28.9
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|||++|+||++++++|++.|+ +|+++.|+.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~---~v~~~~r~~ 32 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA---KVIITYRSS 32 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 58999999999999999999987 789998864
No 232
>PRK05884 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.00082 Score=50.69 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+++||||+|.||++++++|++.+. +|+++.|+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~---~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH---KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4699999999999999999999887 788888864
No 233
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.13 E-value=0.00075 Score=59.65 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+|+++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga---~Vvi~~r~~~ 449 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA---HVVLADLNLE 449 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence 5689999999999999999999999987 7999998753
No 234
>PRK06720 hypothetical protein; Provisional
Probab=97.09 E-value=0.0012 Score=48.83 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=34.3
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.++++.++||||+|.||..++++|++.|. +|++..|+..
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~---~V~l~~r~~~ 51 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDIDQE 51 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 36889999999999999999999999886 7888888643
No 235
>PRK05855 short chain dehydrogenase; Validated
Probab=97.09 E-value=0.00096 Score=55.69 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=34.3
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+++++++||||+|+||++++++|++.|. +|+++.|+..
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~---~v~~~~r~~~ 350 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGA---EVVASDIDEA 350 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 35678999999999999999999999987 6999999753
No 236
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=97.09 E-value=0.0014 Score=50.24 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=29.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++++||||+|+||.+++++|++.|. +|+++.|.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~---~V~~~~~~ 34 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY---RVVLHYHR 34 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC---eEEEEcCC
Confidence 5799999999999999999999987 68877664
No 237
>PRK08303 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0011 Score=52.88 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||++-||.+++++|++.|. +|++..|+.
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~---~Vv~~~r~~ 42 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA---TVYVTGRST 42 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeccc
Confidence 5789999999999999999999999987 788889874
No 238
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=97.06 E-value=0.0013 Score=46.47 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+++||||+|=||..++++|++.+. .+|+++.|+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA--RVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeec
Confidence 5899999999999999999999955 378999998
No 239
>PRK07791 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.0011 Score=51.79 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=32.9
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+++++++||||++.||.+++++|++.|. +|+++.|+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~---~vii~~~~~ 40 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIGV 40 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeeCCc
Confidence 35789999999999999999999999987 677777653
No 240
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=97.04 E-value=0.0014 Score=52.10 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~ 103 (121)
.+++++||||++.||.+++++|++.| . +|++..|+..
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~---~V~l~~r~~~ 39 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEW---HVIMACRDFL 39 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCC---EEEEEeCCHH
Confidence 46899999999999999999999998 5 7888888643
No 241
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=97.01 E-value=0.0016 Score=48.66 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.0
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+||||+|+||.+++++|++.|. +|+++.|..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~---~v~~~~~~~ 32 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF---EICVHYHSG 32 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 58999999999999999999987 688887753
No 242
>PRK08324 short chain dehydrogenase; Validated
Probab=97.00 E-value=0.0012 Score=58.16 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||+|+||.+++++|++.|. +|+++.|+..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~ 457 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEE 457 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHH
Confidence 5689999999999999999999999987 7999999753
No 243
>PRK08309 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0012 Score=49.31 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=28.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+++|||||||+|. +++.|++.|+ +|++..|++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~~R~~ 33 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVIARRE 33 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcC---EEEEEECCH
Confidence 57999999999886 9999999987 788888864
No 244
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.94 E-value=0.002 Score=53.46 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=33.8
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+++++++||||+|.||..++++|++.+. +|+++.|..
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga---~vi~~~~~~ 244 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGA---HVVCLDVPA 244 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 345789999999999999999999999987 688888853
No 245
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0017 Score=47.56 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=29.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+++||||+|.||.+++++|++. . +|+++.|+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~---~vi~~~r~~ 33 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H---EVITAGRSS 33 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C---cEEEEecCC
Confidence 47999999999999999999987 4 788888864
No 246
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.92 E-value=0.0033 Score=48.29 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=31.1
Q ss_pred hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+ +-||.+++++|++.|. +|++..|+.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~---~v~~~~~~~ 42 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA---ELGITYLPD 42 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEEecCc
Confidence 468999999986 6899999999999987 677766653
No 247
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.89 E-value=0.0032 Score=48.43 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=32.1
Q ss_pred hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+ +-||.+++++|++.|. +|++..|..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~---~v~~~~r~~ 43 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA---KLVFTYAGE 43 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEecCcc
Confidence 468999999997 7999999999999987 688887753
No 248
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.88 E-value=0.0017 Score=49.63 Aligned_cols=37 Identities=5% Similarity=0.002 Sum_probs=32.9
Q ss_pred hhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++|+++||||+ +-||..++++|++.|. +|++..|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~---~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEecCc
Confidence 4678999999999 7899999999999987 68888886
No 249
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0028 Score=48.25 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=34.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++||||++-||..++++|++.|. +|++..|+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~---~V~~~~r~~~ 40 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA---TLILCDQDQS 40 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence 4689999999999999999999999987 6888888754
No 250
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.86 E-value=0.0033 Score=48.24 Aligned_cols=37 Identities=5% Similarity=-0.113 Sum_probs=32.4
Q ss_pred hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+ +-||.+++++|++.|. +|++..|+.
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~---~v~l~~r~~ 46 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA---ELAVTYLND 46 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCh
Confidence 578999999998 4899999999999987 688888864
No 251
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.85 E-value=0.0021 Score=49.04 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.8
Q ss_pred hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+++++++||||+| .||.+++++|++.|. +|++..|
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~---~vi~~~~ 40 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA---DIFFTYW 40 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEec
Confidence 5789999999995 799999999999987 5766643
No 252
>PRK07041 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.0018 Score=48.16 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=28.2
Q ss_pred EEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 69 FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 69 lVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+||||+|+||.+++++|++.+. +|+++.|+.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~---~v~~~~r~~ 31 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA---RVTIASRSR 31 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 5899999999999999999987 799999974
No 253
>PRK06484 short chain dehydrogenase; Validated
Probab=96.78 E-value=0.0026 Score=53.36 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=34.2
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++++||||+|.||.+++++|++.|. +|+++.|+.
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~---~V~~~~r~~ 303 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGD---RLLIIDRDA 303 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 45789999999999999999999999987 799999864
No 254
>PRK06484 short chain dehydrogenase; Validated
Probab=96.77 E-value=0.0031 Score=52.91 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.++++++||||++.||.+++++|++.|. +|+++.|+..
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~---~V~~~~r~~~ 40 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGD---QVVVADRNVE 40 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4689999999999999999999999987 7888888644
No 255
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.74 E-value=0.0047 Score=49.10 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=35.2
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
..++|.++||||++-||.++++.|++.|. +|++..|..++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~dr 42 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGA---KVVLAARREER 42 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccHHH
Confidence 34678999999999999999999999998 79999997543
No 256
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=96.72 E-value=0.0063 Score=44.88 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=34.5
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC-CCCccHHHHHHH
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP-KKGKAVQERLEA 113 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~-~~~~~~~~r~~e 113 (121)
+++||||+|-||..+++.|+..+. .+|+++.|+ .......+.+.+
T Consensus 2 tylitGG~gglg~~la~~La~~~~--~~~il~~r~~~~~~~~~~~i~~ 47 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA--RRLILLGRSGAPSAEAEAAIRE 47 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCC--CEEEEeccCCCccHHHHHHHHH
Confidence 689999999999999999999975 489999998 333333434443
No 257
>KOG1205|consensus
Probab=96.71 E-value=0.0039 Score=50.36 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=35.6
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+.||.|+||||+.=||.+++.++++.|. +++.++|....
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~rr 48 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRARR 48 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhhh
Confidence 4568899999999999999999999999987 57777776443
No 258
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.71 E-value=0.0035 Score=48.76 Aligned_cols=37 Identities=5% Similarity=0.051 Sum_probs=32.4
Q ss_pred hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|.++||||++ -||..++++|++.|. +|++..|+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga---~V~~~~r~~ 43 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA---ELAFTYQGE 43 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC---EEEEecCch
Confidence 5789999999996 899999999999987 688877753
No 259
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.68 E-value=0.0041 Score=46.25 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++|+||+|.+|..+++.|++.+. +|+++.|+.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~ 62 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL 62 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 4678999999999999999999999875 789889874
No 260
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.64 E-value=0.0038 Score=48.07 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=31.3
Q ss_pred hhcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++++++++|||| ++-||.+++++|++.|. +|++..|.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~---~v~~~~~~ 41 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA---ELAFTYVV 41 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence 367899999997 66899999999999987 67776664
No 261
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.64 E-value=0.0052 Score=47.15 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=32.7
Q ss_pred hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++|||| ++-||.+++++|++.|. +|++..|+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~---~v~l~~r~~ 43 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA---EVVLTGFGR 43 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC---EEEEecCcc
Confidence 57899999999 78999999999999987 788888764
No 262
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.58 E-value=0.005 Score=50.13 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+|.||||++|.++++.|.++++...++..+.|..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~ 38 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR 38 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc
Confidence 36899999999999999999999765445778887753
No 263
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.0044 Score=50.10 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=34.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~ 116 (121)
|+|+|||++|.+|++|++++. .+. .|+++.|..-.......+.++++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~---~v~a~~~~~~Ditd~~~v~~~i~ 47 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF---EVIATDRAELDITDPDAVLEVIR 47 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc---eEEeccCccccccChHHHHHHHH
Confidence 459999999999999999988 333 79999887644443444555544
No 264
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.56 E-value=0.0048 Score=47.98 Aligned_cols=38 Identities=5% Similarity=-0.038 Sum_probs=32.6
Q ss_pred hhhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+++|+++||||+ +=||.+++++|++.|. +|++..|+
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~---~V~l~~r~ 45 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA---ELAFTYQG 45 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence 45678999999997 7899999999999987 68777775
No 265
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.55 E-value=0.0058 Score=47.43 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=31.6
Q ss_pred hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++|+++||||++ -||..+++.|++.|. +|++..|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~---~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC---EEEEEecc
Confidence 6789999999985 899999999999987 67777776
No 266
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.54 E-value=0.005 Score=47.37 Aligned_cols=37 Identities=5% Similarity=0.130 Sum_probs=31.7
Q ss_pred hhcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++|+++||||++ =||.+++++|++.|. +|++..|+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~---~v~~~~r~ 43 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA---ELWFTYQS 43 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC---EEEEEeCc
Confidence 45789999999996 699999999999987 67777775
No 267
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=96.51 E-value=0.0061 Score=46.42 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=29.2
Q ss_pred eEEEEcCCChHHHHHHHHHHH----hCCCccEEEEEecCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLR----AIPHLKHIYLLVRPKK 103 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~----~~~~~~~V~~l~R~~~ 103 (121)
.++||||+|.||.+++++|++ .+. +|+++.|+..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~---~V~~~~r~~~ 39 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS---VLVLSARNDE 39 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc---EEEEEEcCHH
Confidence 589999999999999999997 455 7888999754
No 268
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.0078 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=28.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+|+++|||| |.||.+++++|. .|. +|+++.|+..
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~---~Vv~~~r~~~ 35 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGK---KVLLADYNEE 35 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCC---EEEEEeCCHH
Confidence 578999998 689999999996 665 7999999743
No 269
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.40 E-value=0.0075 Score=47.12 Aligned_cols=37 Identities=3% Similarity=0.013 Sum_probs=32.2
Q ss_pred hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++||||+ +-||..++++|++.|. +|++..|+.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~---~Vil~~r~~ 41 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA---ELAFTYLNE 41 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEecCH
Confidence 468999999997 6899999999999987 688888863
No 270
>PRK05599 hypothetical protein; Provisional
Probab=96.35 E-value=0.0089 Score=45.52 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+++||||++-||..++++|++ +. +|++..|+..
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~---~Vil~~r~~~ 34 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE---DVVLAARRPE 34 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC---EEEEEeCCHH
Confidence 5799999999999999999984 65 7888898754
No 271
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.34 E-value=0.0087 Score=44.99 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=32.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++||||++-||..+++.|++.|. +|++..|...
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~---~v~~~~~~~~ 40 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGA---RVVVAARRSE 40 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEcCCCc
Confidence 4679999999999999999999998876 6777777643
No 272
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.14 E-value=0.012 Score=45.28 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=30.6
Q ss_pred hhcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++++++|||| ++=||.+++++|++.|. +|++..|.
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~---~v~~~~~~ 41 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGA---ELAFTYVG 41 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC---eEEEEccc
Confidence 357899999997 56899999999999987 67776653
No 273
>KOG1203|consensus
Probab=95.95 E-value=0.0092 Score=50.59 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=36.5
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+..+..+|+|+||||-+|+-+++.|+++|. .|++++|+..+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf---~vra~VRd~~~ 115 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGF---SVRALVRDEQK 115 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCC---eeeeeccChhh
Confidence 3445667999999999999999999999996 79999998655
No 274
>KOG1431|consensus
Probab=95.93 E-value=0.024 Score=45.58 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=24.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPH 91 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~ 91 (121)
++|+|||++|++|++|.+.+..++++
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~ 27 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFD 27 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCC
Confidence 68999999999999999999998863
No 275
>KOG4039|consensus
Probab=95.90 E-value=0.011 Score=45.94 Aligned_cols=38 Identities=32% Similarity=0.598 Sum_probs=34.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++++..+|.||||..|+.+++.++.+ +...+|+++.|.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR 53 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRR 53 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEec
Confidence 57899999999999999999999998 567899999996
No 276
>KOG1208|consensus
Probab=95.83 E-value=0.021 Score=46.53 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=34.7
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+++++|||||.=||.+.+++|+..|. +|+...|+.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga---~Vv~~~R~~ 69 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGA---HVVLACRNE 69 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCC---EEEEEeCCH
Confidence 45679999999999999999999999985 899999986
No 277
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=95.82 E-value=0.016 Score=48.70 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.4
Q ss_pred hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++|+|||| +|.+|.++++++.+.|. +|+++.++
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga---~V~~v~~~ 237 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA---DVTLVSGP 237 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence 57899999999 99999999999999997 68877765
No 278
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.80 E-value=0.02 Score=47.03 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
.+|+|+||||++|.++++.|.++++...++..+..
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s 39 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS 39 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC
Confidence 58999999999999999999976544445555543
No 279
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.75 E-value=0.021 Score=46.58 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCC----ccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPH----LKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~----~~~V~~l~R~~ 102 (121)
.+|+||||+|++|++++..|+..+-. ..+|++++|.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPP 43 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCC
Confidence 47999999999999999999885420 12799999854
No 280
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.037 Score=43.72 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=33.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.|-+|+||||+.-||..+.+++.+.|. +|++..|+.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN---~VIi~gR~e 39 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGN---TVIICGRNE 39 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCC---EEEEecCcH
Confidence 4678999999999999999999999986 799999964
No 281
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=95.69 E-value=0.02 Score=44.32 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.8
Q ss_pred cCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 72 GGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+|||+|.+++++|++.|+ +|+++.|.
T Consensus 23 ~SSG~iG~aLA~~L~~~G~---~V~li~r~ 49 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGH---EVTLVTTK 49 (229)
T ss_pred ccchHHHHHHHHHHHhCCC---EEEEEECc
Confidence 5799999999999999987 68888764
No 282
>KOG0725|consensus
Probab=95.59 E-value=0.035 Score=44.08 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=36.0
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+|.++||||+.=||..++++|++.|. +|++..|+...
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga---~v~i~~r~~~~ 44 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA---KVVITGRSEER 44 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence 46899999999999999999999999987 79999997554
No 283
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.58 E-value=0.023 Score=46.43 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=28.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|+|+||||++|+++++.|+.+ |. .++..+.++.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~-~el~~~~~s~ 38 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PW-FEVTALAASE 38 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEEcCh
Confidence 68999999999999999999876 43 3677775543
No 284
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.56 E-value=0.02 Score=45.45 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=30.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+|+|+||||. |..++++|.+.++ +|++.+|+..+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~---~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGI---EILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCC---eEEEEEccCCc
Confidence 57999999999 9999999999886 78888887654
No 285
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=95.52 E-value=0.023 Score=46.81 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+|+.+|||-||.-|++|.+.|+..|+ .|+.+.|..+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY---~VhGi~Rrss 37 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGY---EVHGIKRRSS 37 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCc---EEEEEeeccc
Confidence 57899999999999999999999998 7999999643
No 286
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=95.46 E-value=0.03 Score=45.13 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.6
Q ss_pred hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++||+++|||| +.-||..+++.|++.|. +|++ .|.
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga---~Vv~-~~~ 43 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA---EILV-GTW 43 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEE-EeC
Confidence 68999999999 78899999999999987 6766 554
No 287
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.44 E-value=0.049 Score=38.65 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=34.4
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.-+++++++|.|| |-.|+.++.+|...+. .+|+++.|+..+
T Consensus 8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~~r 48 (135)
T PF01488_consen 8 GDLKGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTPER 48 (135)
T ss_dssp STGTTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSHHH
T ss_pred CCcCCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCHHH
Confidence 3568999999998 5589999999999976 489999997543
No 288
>KOG1201|consensus
Probab=95.38 E-value=0.059 Score=44.05 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=35.5
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.-+.|+.|+||||++=+|..++.++++.+. ++.+.+.+..+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~---~~vl~Din~~~ 74 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA---KLVLWDINKQG 74 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC---eEEEEeccccc
Confidence 346889999999999999999999999986 68888887655
No 289
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.34 E-value=0.028 Score=46.03 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=27.8
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+|.||||++|.++++.|.++++...++..+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~ 35 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD 35 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 48999999999999999998865554566666554
No 290
>KOG1207|consensus
Probab=95.21 E-value=0.031 Score=43.42 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=37.0
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.++.|+.|++||+.--||+.++.+|.+.|. +|+++.|.+..
T Consensus 2 ~t~laG~~vlvTgagaGIG~~~v~~La~aGA---~ViAvaR~~a~ 43 (245)
T KOG1207|consen 2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKAGA---QVIAVARNEAN 43 (245)
T ss_pred cccccceEEEeecccccccHHHHHHHHhcCC---EEEEEecCHHH
Confidence 3467899999999999999999999999987 89999997543
No 291
>PLN00015 protochlorophyllide reductase
Probab=95.21 E-value=0.029 Score=44.28 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=27.7
Q ss_pred EEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy3445 69 FVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPK 102 (121)
Q Consensus 69 lVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~ 102 (121)
+||||++-||.+++++|++.| . +|++..|+.
T Consensus 1 lITGas~GIG~aia~~l~~~G~~---~V~~~~r~~ 32 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW---HVVMACRDF 32 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC---EEEEEeCCH
Confidence 589999999999999999998 5 788888864
No 292
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.15 E-value=0.038 Score=46.18 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=30.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..++|.|.||||++|.++++.|..+ |. .+|..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P~-~el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-PD-FEITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-CC-CeEEEEECh
Confidence 4568999999999999999999888 44 378888874
No 293
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.98 E-value=0.061 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
..+|+|.||||++|.++++.|.++++...++..+..
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las 42 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS 42 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence 468999999999999999999886544345554443
No 294
>KOG2865|consensus
Probab=94.91 E-value=0.038 Score=45.76 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.|-.+-|.|||||+|..+|.+|.+.|. +|++-.|..
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GS---QviiPyR~d 95 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGS---QVIIPYRGD 95 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCC---eEEEeccCC
Confidence 4556778889999999999999999987 799888854
No 295
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.80 E-value=0.061 Score=43.99 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=26.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
++|+|.||||++|.++++.|.+. |.+ ++.++.+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-p~~-elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-PEV-EIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEC
Confidence 68999999999999999999876 443 5555555
No 296
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.75 E-value=0.098 Score=37.56 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=32.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.|.||+|.+|++++..|+..+ -..+++++++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~-l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG-LADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT-TSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCceEEeccCcc
Confidence 589999999999999999999984 3578999999754
No 297
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.75 E-value=0.056 Score=41.11 Aligned_cols=36 Identities=33% Similarity=0.318 Sum_probs=30.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+|.|.||+|.+|+.+...|++.++ +|.+..|+...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~~r~~~~ 36 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIGSRDLEK 36 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEEEcCHHH
Confidence 5799999999999999999999886 68888887543
No 298
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.72 E-value=0.077 Score=43.73 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+..+|.|.||||++|.++++.|..+.+...++..+..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 4578999999999999999999985333346666554
No 299
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.69 E-value=0.11 Score=37.41 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=27.7
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|.|.|+||+||+..++-+.+. |+--+|+++.=..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n~ 36 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSNI 36 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESSTH
T ss_pred CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCCH
Confidence 578999999999999988887 443477777764433
No 300
>KOG0747|consensus
Probab=94.55 E-value=0.034 Score=45.66 Aligned_cols=32 Identities=31% Similarity=0.720 Sum_probs=27.1
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEE
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIY 96 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~ 96 (121)
.+.++||||.||||++.+..+....|+...+.
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~ 37 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVN 37 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEE
Confidence 38899999999999999999999877754433
No 301
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.53 E-value=0.063 Score=44.02 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEE
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL 97 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~ 97 (121)
++|+|.||||++|..+++.|.++ |.+ ++..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~~ 30 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEV-EITY 30 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCc-eEEE
Confidence 47999999999999999999876 553 4553
No 302
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.43 E-value=0.16 Score=40.56 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=31.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++|+|| |-+|..++..|+..|. ++|+++.|+.
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCc
Confidence 35789999999 6889999999999876 3799999975
No 303
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.42 E-value=0.094 Score=42.32 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|.|+||||++|..++..|+..+. ..+|++++|..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcc
Confidence 5899999999999999999999864 24799999954
No 304
>KOG1014|consensus
Probab=94.30 E-value=0.12 Score=42.59 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=35.2
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+. +-.+|||||.=||++..++|+++|. +|+++.|+.++
T Consensus 45 ~~~~g-~WAVVTGaTDGIGKayA~eLAkrG~---nvvLIsRt~~K 85 (312)
T KOG1014|consen 45 KEKLG-SWAVVTGATDGIGKAYARELAKRGF---NVVLISRTQEK 85 (312)
T ss_pred HHhcC-CEEEEECCCCcchHHHHHHHHHcCC---EEEEEeCCHHH
Confidence 33444 7789999999999999999999998 69999998765
No 305
>PRK05086 malate dehydrogenase; Provisional
Probab=94.28 E-value=0.11 Score=42.13 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=29.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+|.||+|.+|++++..+.........++++.|++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 68999999999999999988663333347888888643
No 306
>KOG1372|consensus
Probab=94.11 E-value=0.16 Score=41.47 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=39.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhhcc
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~~~ 118 (121)
.|..+|||-||-=|+++.+.|+..|+ +|..+.|..+... ..|+..+..++
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgY---eVHGiiRRsSsFN-T~RIeHlY~nP 77 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGY---EVHGIIRRSSSFN-TARIEHLYSNP 77 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCc---eeeEEEeeccccc-hhhhhhhhcCc
Confidence 34678999999999999999999998 7999999765543 45676555543
No 307
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.07 E-value=0.11 Score=39.26 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=34.1
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+.+++.+|+|.|++| +|+++++.|+..|. .++++++.+
T Consensus 13 ~q~~L~~s~VlviG~gg-lGsevak~L~~~GV--g~i~lvD~d 52 (198)
T cd01485 13 AQNKLRSAKVLIIGAGA-LGAEIAKNLVLAGI--DSITIVDHR 52 (198)
T ss_pred HHHHHhhCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence 34567889999999999 99999999999976 488888765
No 308
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.03 E-value=0.11 Score=42.38 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=25.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV 99 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~ 99 (121)
++|.|+||||++|+++++.|..+ +.+ +|..+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v~ 32 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKVV 32 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEE
Confidence 47999999999999999988776 433 555553
No 309
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.98 E-value=0.12 Score=41.47 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=29.8
Q ss_pred hhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445 62 FFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLV 99 (121)
Q Consensus 62 ~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~ 99 (121)
.+++|+++||||+ .-||.+++++|++.|. +|++..
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga---~Vvv~~ 41 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGA---TILVGT 41 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCC---EEEEEe
Confidence 3578999999995 7899999999999997 676654
No 310
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.49 E-value=0.25 Score=34.69 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=31.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.++++++|+|+ |.+|..+++.|++.+. .+|++..|+...
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~--~~v~v~~r~~~~ 55 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGA--AKIVIVNRTLEK 55 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEcCCHHH
Confidence 45789999998 8999999999998752 379998887543
No 311
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.31 E-value=0.18 Score=38.12 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.4
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+++++|+|.|++| +|+++++.|...|- .++.+++.+
T Consensus 16 Q~~L~~s~VlIiG~gg-lG~evak~La~~GV--g~i~lvD~d 54 (197)
T cd01492 16 QKRLRSARILLIGLKG-LGAEIAKNLVLSGI--GSLTILDDR 54 (197)
T ss_pred HHHHHhCcEEEEcCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence 4567889999999888 99999999999976 488888764
No 312
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.24 E-value=0.22 Score=39.28 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=32.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++++|+|+ |-+|..++.+|...+. .+|+++.|+..+
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~--~~V~v~~R~~~~ 159 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGV--AEITIVNRTVER 159 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 46789999997 8899999999999874 389999998543
No 313
>PLN00106 malate dehydrogenase
Probab=93.10 E-value=0.25 Score=40.49 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++|.|+||+|.+|+.++..|+..+. +.++.++++.+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCC
Confidence 36899999999999999999887643 35899998865
No 314
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.02 E-value=0.23 Score=36.98 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+++|+|.|+++++|.-++..|.+.+. +|++..|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc
Confidence 6889999999998999999999999875 688888874
No 315
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.02 E-value=0.15 Score=41.74 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
-+|.|.||+||.|.++++.|..+ |++.-+.+..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~ 35 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPD 35 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecc
Confidence 36999999999999999999998 76544444444
No 316
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.96 E-value=0.18 Score=41.74 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+|+|+++ +|..+++.|++.|+ +|++..+..
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGA---KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEEeCCc
Confidence 4789999999999 99999999999998 788888864
No 317
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.18 Score=42.09 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=28.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~ 105 (121)
.+|+|.||+|+.|.+|++.|..+ |++....+..|...++
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~ 41 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGK 41 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCC
Confidence 58999999999999999999988 6665333333432333
No 318
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.71 E-value=0.32 Score=34.01 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|+|.|++|-.|+.+++.+.+. ++..-+.++.|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence 47999999999999999999996 4544566777765
No 319
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.57 E-value=0.16 Score=42.86 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=31.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|+|.|| |.+|+.+++.|++++. .+|++..|+..+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~ 37 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEK 37 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHH
Confidence 67999999 9999999999999974 489999998654
No 320
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=92.51 E-value=0.25 Score=41.47 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=30.9
Q ss_pred hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|++|+|||| +|.+|..+++++...|. +|+++.+.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga---~V~~~~g~ 234 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA---DVTLITGP 234 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence 67899999988 47899999999999997 67777664
No 321
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.49 E-value=0.24 Score=40.64 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
-.+.+++++|+|.|++| +|++++..|++.|. .++.+++++.
T Consensus 18 ~Q~~L~~~~VlIiG~Gg-lGs~va~~La~aGv--g~i~lvD~D~ 58 (338)
T PRK12475 18 GQRKIREKHVLIVGAGA-LGAANAEALVRAGI--GKLTIADRDY 58 (338)
T ss_pred HHHhhcCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCCc
Confidence 34567889999999866 89999999999976 4899888864
No 322
>KOG4169|consensus
Probab=92.49 E-value=0.18 Score=40.40 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=35.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHH
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI 114 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~ 114 (121)
++||.+++||+.|=||...+.+|+..+- +.+.++.|-+. ..+...+.+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi--k~~~i~~~~En-~~a~akL~ai 51 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI--KVLVIDDSEEN-PEAIAKLQAI 51 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc--hheeehhhhhC-HHHHHHHhcc
Confidence 4699999999999999999999999865 35555555443 3334444443
No 323
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.42 E-value=0.28 Score=40.19 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=26.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+|.|.||||++|.++++.|.++ |.+ ++..+..+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s~ 36 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPEA 36 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEecC
Confidence 57999999999999999988887 554 45555443
No 324
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.14 E-value=0.29 Score=37.20 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=34.5
Q ss_pred chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+..+.++.++|+|.|++| +|+.++..|++.|. .++++++++
T Consensus 14 ~~q~~L~~~~V~IvG~Gg-lGs~ia~~La~~Gv--g~i~lvD~D 54 (200)
T TIGR02354 14 KIVQKLEQATVAICGLGG-LGSNVAINLARAGI--GKLILVDFD 54 (200)
T ss_pred HHHHHHhCCcEEEECcCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence 456678889999999965 89999999999976 478888876
No 325
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.13 E-value=0.33 Score=40.28 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEec
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVR 100 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R 100 (121)
+.+|.|.||||++|..+++.|..+ .-.+.++..+.-
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS 41 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS 41 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC
Confidence 468999999999999999988854 222334555553
No 326
>KOG2015|consensus
Probab=92.04 E-value=0.47 Score=39.86 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=43.0
Q ss_pred ChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445 34 DPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV 99 (121)
Q Consensus 34 ~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~ 99 (121)
.+..+|.|+.+...+... ...+-.+++.+.+|+|.||+| +|.++++.|+-.|.. ++.+++
T Consensus 12 ~~~~~l~r~gpf~~~~f~---~~~e~l~~l~~~kiLviGAGG-LGCElLKnLal~gF~--~~~viD 71 (422)
T KOG2015|consen 12 GWRQSLERPGPFNLDAFE---PSEENLEFLQDCKILVIGAGG-LGCELLKNLALSGFR--QLHVID 71 (422)
T ss_pred HHHHHhcCCCCCCCCCCC---CCHHHHHHHhhCcEEEEccCc-ccHHHHHhHHhhccc--eeEEEe
Confidence 345567776544433332 555677888889999999998 599999999998764 565555
No 327
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.92 E-value=0.4 Score=36.30 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++|+++|.|. |-+|+++++.|.+.|. +|++..++.
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~---~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEGA---KLIVADINE 61 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 57899999999 4799999999999987 688777763
No 328
>PRK06849 hypothetical protein; Provisional
Probab=91.80 E-value=0.46 Score=38.85 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=32.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.|+|+|||++..+|-.+++.|.+.|. +|+++...+..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~---~Vi~~d~~~~~ 40 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH---TVILADSLKYP 40 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchH
Confidence 458999999999999999999999987 78888776543
No 329
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=91.73 E-value=0.41 Score=40.48 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=27.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+|.|.|+||+||+..++-+.+. ++--+|.++.=..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~-~~~f~v~~Laa~~ 37 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN-PDHFQVVALSAGK 37 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC-ccccEEEEEEcCC
Confidence 68999999999999999887765 4323677776544
No 330
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.66 E-value=0.36 Score=40.85 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=30.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|.|.||+|.+|..++..|.+.|. +|++..|++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~ 35 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPK 35 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence 5799999999999999999999876 6888888754
No 331
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.62 E-value=0.6 Score=37.46 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=31.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+++++++|.||+|- ++.++..|+..+. .+|+++.|+..
T Consensus 122 ~~~k~vlvlGaGGa-arAi~~~l~~~g~--~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGGA-STAIGAQGAIEGL--KEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcHH-HHHHHHHHHHCCC--CEEEEEeCCcc
Confidence 46789999999887 8899999988765 48999999854
No 332
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.47 E-value=0.43 Score=33.39 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.3
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++++|+|.|++ -+|++++..|++.|. .++.+++.+
T Consensus 1 r~~~v~iiG~G-~vGs~va~~L~~~Gv--~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAG-GVGSEVAKNLARSGV--GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTS-HHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CCCEEEEECcC-HHHHHHHHHHHHhCC--CceeecCCc
Confidence 35788887765 589999999999976 488888864
No 333
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.42 E-value=0.36 Score=39.97 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.++|.|.||.|.+|..++..|.+.|+ .|++..|+.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC---eEEEeCCCc
Confidence 47899999999999999999999987 688888854
No 334
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=91.34 E-value=0.51 Score=36.97 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=27.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|+|+|++|.+|+.+++.+.+. +++.-+.++.++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 58999999999999999888765 4444455566654
No 335
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.27 E-value=0.44 Score=39.01 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=30.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.++|.|+||+|.+|+.+...|+..+. ..++.++++.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecC
Confidence 4567999999999999999998886542 3589999884
No 336
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=91.18 E-value=0.55 Score=36.21 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=31.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+++|+||+|.+|..+++.+...|. +|+++.|+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~---~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGA---RVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 467999999999999999999988876 688888764
No 337
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=0.37 Score=39.93 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+|||++| +|...++.|++.|. +|++..+..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEEcCCC
Confidence 4689999999999 99999999999987 688887754
No 338
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.12 E-value=0.46 Score=39.44 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
++|.|.||||.+|+.+++.|..+.+.+..+.++..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS 36 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLAS 36 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEec
Confidence 57999999999999999999997676665555544
No 339
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=91.11 E-value=0.58 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=27.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
|+|.|.|+||+||...++.+.+. |+--+|.++.-+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~-p~~f~VvaLaa~ 36 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRN-PDRFRVVALSAG 36 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhC-ccccEEEEEEcC
Confidence 68999999999999999887765 433477777643
No 340
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.05 E-value=0.45 Score=39.05 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=34.0
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...++.++|+|.|+ |.+|++++..|.+.|. .+|.+++++.
T Consensus 19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGA-GALGTANAEMLVRAGV--GKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCc
Confidence 45678899999998 7799999999999976 4899998863
No 341
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.01 E-value=0.52 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|.|+||+|.+|++++..|+..+- +.++++++++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC
Confidence 5899999999999999998887753 3588888876
No 342
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.43 Score=38.07 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.|.| .|++|+.+...|++.|+ +|++..|++.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~---~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGH---EVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCC---eeEEEeCCHH
Confidence 4789998 99999999999999987 7999999754
No 343
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.81 E-value=0.47 Score=35.29 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=28.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+|.|.|| |.+|..|+..++..|+ +|.+..+++..
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY---EVTLYDRSPEA 34 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS---EEEEE-SSHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC---cEEEEECChHH
Confidence 5788888 9999999999999988 79999997554
No 344
>PRK08328 hypothetical protein; Provisional
Probab=90.74 E-value=0.53 Score=36.42 Aligned_cols=41 Identities=29% Similarity=0.242 Sum_probs=33.2
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
....+++.+|+|.|++| +|++++..|++.|. .++++++.+.
T Consensus 21 ~q~~L~~~~VlIiG~GG-lGs~ia~~La~~Gv--g~i~lvD~D~ 61 (231)
T PRK08328 21 GQEKLKKAKVAVVGVGG-LGSPVAYYLAAAGV--GRILLIDEQT 61 (231)
T ss_pred HHHHHhCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCCc
Confidence 34567889999998877 69999999999976 4888887643
No 345
>KOG1611|consensus
Probab=90.66 E-value=0.57 Score=37.35 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.++|+||||+-=||-.++++|++. +++..+++-.|++..
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~ 41 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEK 41 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHH
Confidence 356999999999999999999987 555567777776655
No 346
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=90.66 E-value=0.59 Score=31.97 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=25.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~ 101 (121)
++.|+|++|.+|.+++..+... +++ +++++ .|.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCc-eEEEEEech
Confidence 4789999999999999999886 333 45555 443
No 347
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.63 E-value=0.81 Score=33.71 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=32.7
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+++|.|.|. |-||+.+++.+...|. +|++..|....
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~---~V~~~d~~~~~ 71 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM---RVIGYDRSPKP 71 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT----EEEEEESSCHH
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCc---eeEEecccCCh
Confidence 457899999965 9999999999999987 89999998653
No 348
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.57 E-value=0.72 Score=36.03 Aligned_cols=40 Identities=28% Similarity=0.186 Sum_probs=33.6
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++++|+|.|+ |-+|++++..|++.|- .++.+++.+.
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D~ 66 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFDT 66 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCE
Confidence 45678899999999 7799999999999875 4888887653
No 349
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.56 E-value=0.44 Score=38.87 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=27.0
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+|.|| |++|+.+++.|+++.+ ..+|++.+|+..+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~-~~~v~va~r~~~~ 35 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGP-FEEVTVADRNPEK 35 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTC-E-EEEEEESSHHH
T ss_pred CEEEcC-cHHHHHHHHHHhcCCC-CCcEEEEECCHHH
Confidence 789999 9999999999999854 2389999997543
No 350
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.52 E-value=0.48 Score=38.64 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=28.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK 102 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~ 102 (121)
+|+|+||+|.+|+.++..|+..+- +. .++++++.+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~-~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGEL-FGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCc-cCCCCceEEEEEecCC
Confidence 699999999999999998887643 23 488888875
No 351
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.30 E-value=0.66 Score=37.00 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=32.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.++++|+|.|++| .|+.++..|+..+. .+|+++.|+..+
T Consensus 125 ~~~k~vlIlGaGG-aaraia~aL~~~G~--~~I~I~nR~~~k 163 (284)
T PRK12549 125 ASLERVVQLGAGG-AGAAVAHALLTLGV--ERLTIFDVDPAR 163 (284)
T ss_pred ccCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEECCCHHH
Confidence 4567999999977 89999999999865 489999997544
No 352
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.23 E-value=0.8 Score=35.88 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++++++|+|+ |-+|..++..|++.+. +|++..|+..
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~---~v~v~~R~~~ 151 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC---NVIIANRTVS 151 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 4789999999 6899999999998864 7888888753
No 353
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.23 E-value=1 Score=29.31 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+.+++++|.|+ |-.|..++..+++.+. .+|++..|
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~--~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGG--KKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 56789999999 9999999999999853 37888777
No 354
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.11 E-value=0.73 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~ 102 (121)
.++|.|+||+|.+|+.++..|+..+- +. +++++++..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~ 43 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQ 43 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCC
Confidence 46899999999999999999887653 34 788888843
No 355
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=89.69 E-value=0.88 Score=34.41 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=25.8
Q ss_pred hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|++|+||+| +|-.|.+|++.++.+|. .|+.+...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga---~V~li~g~ 52 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA---EVTLIHGP 52 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-T
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC---EEEEEecC
Confidence 46788888855 68899999999999998 57766664
No 356
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.69 E-value=0.84 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.7
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+++++|+|.|| |-+|...++.|++.+. +|+++.+.
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga---~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGA---HIVVISPE 42 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEcCC
Confidence 468999999998 8899999999999986 67777764
No 357
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.64 E-value=0.69 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=30.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++++|+|| |-+|+.++.+|++.|. +|+++.|+.
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~---~V~i~nR~~ 412 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGA---RVVIANRTY 412 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 45789999999 6789999999999875 788888864
No 358
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.56 E-value=1.6 Score=35.35 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++|.|+|| |.+|+.++..|+..+- +.++++++++...
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~-~~el~L~D~~~~~ 43 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGI-ADELVIIDINKEK 43 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCCch
Confidence 4579999998 9999999999888743 4589999997654
No 359
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.52 E-value=0.75 Score=37.00 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|++|+|.|++|.+|+.++..|+..+. .|++..|.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga---tVtv~~~~ 192 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA---TVTICHSR 192 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC---EEEEEeCC
Confidence 5789999999999999999999998865 78877773
No 360
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=89.48 E-value=0.67 Score=47.27 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=33.1
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+-++++++||||++-||..++++|++.+.. +|+++.|+
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga--~viL~gRs 2031 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQA--HFILAGRS 2031 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCC--EEEEEeCC
Confidence 456899999999999999999999998432 79999997
No 361
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=89.34 E-value=0.94 Score=39.07 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.-++|.|.|+||+||+..++-+.++ ++--+|.++.=.
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~-pd~f~vvaLaag 92 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAEN-PDKFKVVALAAG 92 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhC-ccccEEEEEECC
Confidence 3479999999999999999888775 442356666543
No 362
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=89.33 E-value=0.63 Score=39.01 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=26.3
Q ss_pred CeEEEEcCCChHHHHHHHHHH-HhCCCccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLL-RAIPHLKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll-~~~~~~~~V~~l~R 100 (121)
++|.|.||||.+|+.+++.|. ...-.+.+++++.-
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss 36 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFST 36 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEc
Confidence 478999999999999999998 43333345666654
No 363
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.31 E-value=0.62 Score=38.45 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
|+|+|+|+ |.+|.++++.|.+.+. .|+++.|++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEE 34 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHH
Confidence 57899988 9999999999999877 6888888653
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.29 E-value=0.64 Score=36.72 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.|.+|+|+||+|-+|..++..+...|. +|++.+++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 468999999999999998876666665 688877754
No 365
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.26 E-value=0.57 Score=39.26 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=25.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCC-ccEEEEEec
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPH-LKHIYLLVR 100 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~-~~~V~~l~R 100 (121)
++|.|.||||++|..+++.++....- +.++..+..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss 37 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST 37 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence 47999999999999999977776321 234555554
No 366
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.23 E-value=0.7 Score=36.09 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=32.9
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++.+|+|.|++| +|++++..|++.|- .++++++++.
T Consensus 19 q~~L~~~~VlvvG~Gg-lGs~va~~La~~Gv--g~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGG-LGCAASQYLAAAGV--GNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCH-HHHHHHHHHHHcCC--CEEEEEeCCc
Confidence 4568889999998876 79999999999875 4888887753
No 367
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.06 E-value=0.68 Score=36.29 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=28.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+||+|-+|..++......|. +|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~---~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC---KVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 468999999999999988866666654 688877754
No 368
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.06 E-value=1 Score=36.42 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=32.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++++++|.||+| .+..++.+|++.+. .+|+++.|...+
T Consensus 125 ~~~~vlilGAGG-AarAv~~aL~~~g~--~~i~V~NRt~~r 162 (283)
T COG0169 125 TGKRVLILGAGG-AARAVAFALAEAGA--KRITVVNRTRER 162 (283)
T ss_pred CCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 468999999988 58999999999976 489999998654
No 369
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.87 E-value=0.8 Score=35.76 Aligned_cols=39 Identities=31% Similarity=0.286 Sum_probs=32.1
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+++.+|+|.|.+| +|+++++.|++.|- .++++++.+
T Consensus 6 ~~~L~~~~VlVvG~GG-vGs~va~~Lar~GV--g~i~LvD~D 44 (231)
T cd00755 6 LEKLRNAHVAVVGLGG-VGSWAAEALARSGV--GKLTLIDFD 44 (231)
T ss_pred HHHHhCCCEEEECCCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence 4567889999998776 79999999999976 488888764
No 370
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.72 E-value=0.87 Score=37.57 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.3
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+++++|+|.|++| +|++++..|++.|. .++++++++
T Consensus 131 ~~l~~~~VlvvG~GG-~Gs~ia~~La~~Gv--g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGG-LGSPAALYLAAAGV--GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCH-HHHHHHHHHHHcCC--CeEEEEeCC
Confidence 457889999998755 89999999999976 489998886
No 371
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=88.70 E-value=0.88 Score=37.05 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=29.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+|.|+||+|.+|++++..|+..+ -+.++.++++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~-~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP-YVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence 58999999999999999988774 345888888865
No 372
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.69 E-value=0.92 Score=36.32 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=31.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++|.|+ |.+|..+++.|...|. +|++..|+..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~---~V~v~~R~~~ 185 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA---RVFVGARSSA 185 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence 46899999999 6699999999999886 7999999753
No 373
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.64 E-value=0.82 Score=35.42 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+||+|-+|..++......|. +|++..++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 468999999999999998877777765 688877654
No 374
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=88.52 E-value=1.2 Score=37.66 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=28.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|++.|.|+||+||..-+.-+.+. |+.-+|.++.=..
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~-p~~f~vval~ag~ 37 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRN-PDKFEVVALAAGK 37 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhC-CCcEEEEEEecCC
Confidence 68999999999999999887776 5434677777554
No 375
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.41 E-value=1.5 Score=35.87 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=30.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~ 102 (121)
-+|.|+||+|.+|++++..|+..+. +. +++++++..
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGEL-FGKDQPVVLHLLDIPP 44 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCc-ccCCCccEEEEEecCC
Confidence 4799999999999999999888753 35 788888854
No 376
>KOG1209|consensus
Probab=88.21 E-value=0.92 Score=36.36 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCeEEEEcC-CChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 65 DASVFVTGG-TGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 65 ~~~VlVTGa-tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.|+|||+ .|-||.++.+.+.+.|+ +|++..|....
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e~ 44 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLEP 44 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccch
Confidence 478999875 78999999999999998 89999997544
No 377
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.13 E-value=0.96 Score=36.39 Aligned_cols=39 Identities=33% Similarity=0.314 Sum_probs=32.0
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+++.+|+|.|.+| +|+|.+++|.+.|- .++.+++-+
T Consensus 25 lekl~~~~V~VvGiGG-VGSw~veALaRsGi--g~itlID~D 63 (263)
T COG1179 25 LEKLKQAHVCVVGIGG-VGSWAVEALARSGI--GRITLIDMD 63 (263)
T ss_pred HHHHhhCcEEEEecCc-hhHHHHHHHHHcCC--CeEEEEecc
Confidence 3467888999999988 89999999999975 477777653
No 378
>PRK06153 hypothetical protein; Provisional
Probab=87.98 E-value=1 Score=38.17 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=33.5
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+.+.+++.+|+|.|++| +|++++..|++.|- .++++++-+
T Consensus 170 ~q~kL~~~~VaIVG~GG-~GS~Va~~LAR~GV--geI~LVD~D 209 (393)
T PRK06153 170 LSAKLEGQRIAIIGLGG-TGSYILDLVAKTPV--REIHLFDGD 209 (393)
T ss_pred HHHHHhhCcEEEEcCCc-cHHHHHHHHHHcCC--CEEEEECCC
Confidence 36678899999999988 69999999999975 588888754
No 379
>PRK08223 hypothetical protein; Validated
Probab=87.92 E-value=0.99 Score=36.63 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=33.8
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
-.+.+++.+|+|.|++| +|++++..|++.|- .++.+++.+.
T Consensus 21 ~Q~kL~~s~VlIvG~GG-LGs~va~~LA~aGV--G~i~lvD~D~ 61 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGG-VGGIHLLTLARLGI--GKFTIADFDV 61 (287)
T ss_pred HHHHHhcCCEEEECCCH-HHHHHHHHHHHhCC--CeEEEEeCCC
Confidence 34668889999999887 69999999999976 4888888653
No 380
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=87.89 E-value=1.8 Score=36.71 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=28.2
Q ss_pred cCCeEEEEcCCChHHHH--HHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKI--LVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~--ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+|+++||||++-+|.. ++++| +.|. .++++.+.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA---~Vi~v~~~ 75 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGA---DTLGVFFE 75 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCC---eEEEEecC
Confidence 46899999999999999 88898 8876 57777753
No 381
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.89 E-value=1.1 Score=35.96 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=31.6
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+++.+|+|.|++| +|+++++.|++.|- .++++++.+
T Consensus 25 ~~kL~~s~VlVvG~GG-VGs~vae~Lar~GV--g~itLiD~D 63 (268)
T PRK15116 25 LQLFADAHICVVGIGG-VGSWAAEALARTGI--GAITLIDMD 63 (268)
T ss_pred HHHhcCCCEEEECcCH-HHHHHHHHHHHcCC--CEEEEEeCC
Confidence 3567889999998765 89999999999975 478888764
No 382
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.85 E-value=2 Score=34.89 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.|++|+|.|+++.+|.-+...|+..+. .|+++.+..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga---tVtv~~s~t 192 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA---SVTILHSRS 192 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCCc
Confidence 6789999999999999999999998875 677777643
No 383
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=87.43 E-value=1.6 Score=33.00 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=30.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+++++|+|++|.+|..++..+...+. +|++..++.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~ 179 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGA---RVIATASSA 179 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 3578999999999999999988887765 688887753
No 384
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=87.39 E-value=1.5 Score=33.01 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=30.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+.+|+|+|++|.+|..++..+...|. +|++..++
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~---~v~~~~~~ 173 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGA---RVIATAGS 173 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCC---EEEEEcCC
Confidence 3578999999999999999998888875 67777775
No 385
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=87.19 E-value=1 Score=34.76 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.1
Q ss_pred cCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 72 GGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
.++|.+|.+++++|++.|. +|+++.|
T Consensus 22 ~SSGgIG~AIA~~la~~Ga---~Vvlv~~ 47 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGH---EVTLVTT 47 (227)
T ss_pred CcccHHHHHHHHHHHHCCC---EEEEEcC
Confidence 4689999999999999998 6777665
No 386
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.12 E-value=1.4 Score=34.30 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++|+|.|+ |.+|+.+...|.+.|+ +|.++.|+.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH---DVTLVARRG 33 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCh
Confidence 46889887 8999999999999876 699999854
No 387
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.01 E-value=0.84 Score=37.70 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=28.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+|.| ||||.+|..+++.|-+++-.+.+++++.-.
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~ 38 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIE 38 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccc
Confidence 47999 999999999999998887666677766543
No 388
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=86.97 E-value=1.4 Score=34.10 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+|+|.|++|.+|..++......|. +|++..++.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~ 181 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGY---EVVASTGKA 181 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---eEEEEecCH
Confidence 56999999999999998877777765 688877764
No 389
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.91 E-value=1.8 Score=33.15 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.2
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
....+++.+|+|.|+ |-+|++++..|.+.|. .++++++.+
T Consensus 22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~Gv--g~i~lvD~D 61 (212)
T PRK08644 22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSGV--GNLKLVDFD 61 (212)
T ss_pred HHHHHhCCCEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 456778899999997 5589999999999876 488888876
No 390
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.87 E-value=1.2 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.+|+|+|++| +|..++..+...+. +|+++.++.
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~---~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGA---RVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCC---eEEEEcCCH
Confidence 3578999999999 99999887777764 788888764
No 391
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=86.77 E-value=0.86 Score=37.54 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=30.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++..+|.|+||+|.||+.+++.|....- ++..+.|+.
T Consensus 165 lsqatvaivGa~G~Ia~~Iar~la~~~~---~~~ll~r~a 201 (351)
T COG5322 165 LSQATVAIVGATGDIASAIARWLAPKVG---VKELLLRDA 201 (351)
T ss_pred HHHCeEEEecCCchHHHHHHHHhccccC---EEEEecccH
Confidence 3457999999999999999999888743 677777763
No 392
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.76 E-value=1.6 Score=35.11 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=32.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |-+|..++..|...+. .+|++..|+..+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~--~~V~v~~r~~~r 214 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGV--AEITIANRTYER 214 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 46899999988 9999999999988654 389999997543
No 393
>KOG2733|consensus
Probab=86.72 E-value=0.62 Score=39.53 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=28.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHhC--CCccEEEEEecCCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAI--PHLKHIYLLVRPKKG 104 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~--~~~~~V~~l~R~~~~ 104 (121)
-++|.||+||.|..+++.+.+.. ++ ..+.+-.|++.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~K 45 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKK 45 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHH
Confidence 47899999999999999999932 11 267778887544
No 394
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.59 E-value=2.2 Score=34.51 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.++|.|.|| |.+|+.+...++..+- ..|++++++...
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~ 41 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGV 41 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCcc
Confidence 46789999997 9999999998888763 379999987654
No 395
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.56 E-value=1.9 Score=32.57 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=33.0
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
-.+.+++++|+|.|++ -+|++++..|.+.|. .++++++++
T Consensus 15 ~q~kl~~~~VlviG~G-glGs~ia~~La~~Gv--~~i~lvD~d 54 (202)
T TIGR02356 15 GQQRLLNSHVLIIGAG-GLGSPAALYLAGAGV--GTIVIVDDD 54 (202)
T ss_pred HHHHhcCCCEEEECCC-HHHHHHHHHHHHcCC--CeEEEecCC
Confidence 3467888999999855 579999999999976 489988876
No 396
>KOG1200|consensus
Probab=86.55 E-value=1.7 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=36.7
Q ss_pred chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+..+.+..+..+||||+.=||+.++..|.+.|. +|.+..++...
T Consensus 7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Ga---rv~v~dl~~~~ 50 (256)
T KOG1200|consen 7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGA---RVAVADLDSAA 50 (256)
T ss_pred HHHHHHhcceeEEecCCchHHHHHHHHHHhcCc---EEEEeecchhh
Confidence 456677889999999999999999999999987 67777775443
No 397
>KOG1478|consensus
Probab=86.49 E-value=2.2 Score=35.04 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCc--cEEEEEecCCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHL--KHIYLLVRPKKG 104 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~--~~V~~l~R~~~~ 104 (121)
.|.++|||++.-+|-.||..|++..... -.+++..|+.++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k 44 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK 44 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH
Confidence 4678999999999999999999974331 245555676554
No 398
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.46 E-value=1.2 Score=34.92 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=27.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+|+|+||+|-+|...+......|. .+|++.+++.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~ 190 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSD 190 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCH
Confidence 7999999999999998876666654 2688887764
No 399
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.43 E-value=1.9 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=26.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+|.|+ |-+|+++++.|++.|. .++.+++.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFD 32 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence 4788887 7799999999999976 488888764
No 400
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.21 E-value=1.1 Score=30.16 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++|+|.|+ |-+|..=++.|++.+. +|+++...
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA---~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAGA---KVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCTB---EEEEEESS
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEECCc
Confidence 57899999998 8899999999999976 78887776
No 401
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=86.10 E-value=1.4 Score=39.77 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+.+++.+|+|.|++| +|+++++.|++.|- .+|++++.+
T Consensus 334 ekL~~~kVLIvGaGG-LGs~VA~~La~~GV--g~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGT-LGCNVARCLIGWGV--RHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcH-HHHHHHHHHHHcCC--CeEEEEcCC
Confidence 557789999999887 69999999999976 488888753
No 402
>PRK05442 malate dehydrogenase; Provisional
Probab=85.75 E-value=1.8 Score=35.41 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~ 102 (121)
-++|.|+||+|.+|+.++..|+..+- +. +++++++.+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPP 45 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCC
Confidence 35899999999999999998887543 24 788888853
No 403
>KOG2013|consensus
Probab=85.75 E-value=1.4 Score=38.77 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
.+..++.+|||.||+| ||++|++.|+..|-. .|.++.-
T Consensus 7 ~eai~~~riLvVGaGG-IGCELLKnLal~gf~--~IhiIDl 44 (603)
T KOG2013|consen 7 HEAIKSGRILVVGAGG-IGCELLKNLALTGFE--EIHIIDL 44 (603)
T ss_pred HHHhccCeEEEEecCc-ccHHHHHHHHHhcCC--eeEEEec
Confidence 3455788999999988 899999999998764 6776663
No 404
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.74 E-value=1.9 Score=35.13 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=32.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+.|++|.|.|. |.||+.+++.+...|. +|++..|...
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~ 184 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM---RILYYSRTRK 184 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCC
Confidence 468899999988 9999999999999987 7888888653
No 405
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.72 E-value=1.7 Score=36.18 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=33.2
Q ss_pred hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
-...+++.+|+|.|++| +|++++..|++.|. .++++++.+
T Consensus 35 ~q~~l~~~~VliiG~Gg-lG~~v~~~La~~Gv--g~i~ivD~D 74 (370)
T PRK05600 35 QQERLHNARVLVIGAGG-LGCPAMQSLASAGV--GTITLIDDD 74 (370)
T ss_pred HHHHhcCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEeCC
Confidence 34667889999998876 79999999999876 488888875
No 406
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.72 E-value=2.8 Score=27.11 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=26.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPKK 103 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~~ 103 (121)
+|.+. |+|-+|+.+++.|++.+....+|+.. .|++.
T Consensus 1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 45566 88999999999999998322378855 77654
No 407
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=85.71 E-value=1.6 Score=35.63 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=28.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPKK 103 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~~ 103 (121)
+|.|+||+|.+|+.++..|+..+- +. +++++++.+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCc
Confidence 589999999999999999887543 11 5888888543
No 408
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=85.49 E-value=1.6 Score=36.41 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=32.4
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
...+++.+|+|.|++| +|++++..|++.|. .++.+++.+
T Consensus 37 q~~L~~~~VlviG~GG-lGs~va~~La~~Gv--g~i~lvD~D 75 (392)
T PRK07878 37 QKRLKNARVLVIGAGG-LGSPTLLYLAAAGV--GTLGIVEFD 75 (392)
T ss_pred HHHHhcCCEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence 4567889999999877 79999999999876 488887764
No 409
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.45 E-value=1.9 Score=35.21 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=32.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.||+|.+.|.+|.+|..+...|++.+. .|++..|..
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga---tVtv~~~~t 193 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC---SVTVVHSRS 193 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEECCCC
Confidence 5799999999999999999999999987 688886654
No 410
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=85.42 E-value=1.9 Score=36.16 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=32.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |-+|..++..|...|. .+|++..|+..+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~--~~V~v~~rs~~r 216 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGV--GKILIANRTYER 216 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCC--CEEEEEeCCHHH
Confidence 56799999997 9999999999998764 389999997543
No 411
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=85.28 E-value=2 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.7
Q ss_pred EEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecCCCC
Q psy3445 68 VFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRPKKG 104 (121)
Q Consensus 68 VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~~~~ 104 (121)
|.|.||+|.+|..++..|+..+. ...+|+++++++..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~ 38 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK 38 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCccc
Confidence 57899999999999999998861 22489999987654
No 412
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=85.16 E-value=2.9 Score=32.63 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=25.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+...||+|.+|+.+.+.|.+.++ +|+.-.|.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~---eV~igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH---EVIIGSSR 33 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC---eEEEecCC
Confidence 455669999999999999999987 56655443
No 413
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.99 E-value=2.3 Score=32.24 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
++.+++|+|++|.+|..++..+...|. +++++.++.
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~---~v~~~~~~~ 179 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGA---TVIATTRTS 179 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence 567999999999999999998888875 677777653
No 414
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.96 E-value=2.2 Score=32.99 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+++++|+|.|| |-.|..++.+|...|...++|+++.|+
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57789999999 778999999999875411289999998
No 415
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.94 E-value=1.9 Score=33.79 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=29.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|..++..+++.++ +|+++.+++..
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~---~V~~~d~~~~~ 38 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY---DVVMVDISDAA 38 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC---ceEEEeCCHHH
Confidence 46888877 9999999999999987 68888887544
No 416
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.83 E-value=2.5 Score=32.34 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=31.3
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+++++|+|.|++| +|++++..|++.|. .++++++.+
T Consensus 16 q~~L~~~~VlivG~Gg-lGs~va~~La~~Gv--g~i~lvD~D 54 (228)
T cd00757 16 QEKLKNARVLVVGAGG-LGSPAAEYLAAAGV--GKLGLVDDD 54 (228)
T ss_pred HHHHhCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCC
Confidence 4567889999998654 89999999999976 478777643
No 417
>PRK07411 hypothetical protein; Validated
Probab=84.70 E-value=1.9 Score=35.99 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=32.7
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
...+++.+|+|.|++| +|++++..|++.|- .++.+++.+
T Consensus 33 q~~L~~~~VlivG~GG-lG~~va~~La~~Gv--g~l~lvD~D 71 (390)
T PRK07411 33 QKRLKAASVLCIGTGG-LGSPLLLYLAAAGI--GRIGIVDFD 71 (390)
T ss_pred HHHHhcCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence 4568889999999887 69999999999976 488888764
No 418
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.69 E-value=4.2 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.++|.|+|+ |.+|+.++..|+..+- +.++++++++...
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~ 40 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDK 40 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccH
Confidence 358999996 9999999998887743 4689999987643
No 419
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.62 E-value=3.9 Score=32.34 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=29.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|| |++|+.++..++..+.. +|+++++++..
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~ 38 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGV 38 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCch
Confidence 68999999 99999999998887542 79999986554
No 420
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.61 E-value=2 Score=34.20 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=29.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+|+|+|+ |-+|...+..+...|. .+|++..+++.+
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~--~~Vi~~~~~~~~ 206 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGA--AEIVCADVSPRS 206 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeCCHHH
Confidence 5789999986 8999998876666654 378888886543
No 421
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=84.45 E-value=3.3 Score=35.58 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=32.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHh---C---CCccEEEEEecCCCCc
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRA---I---PHLKHIYLLVRPKKGK 105 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~---~---~~~~~V~~l~R~~~~~ 105 (121)
-+--+|.|+||+|.+|++++..|+.. + +-+.+++.+.++....
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a 146 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQAL 146 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchh
Confidence 34468999999999999999998876 1 1124788888876653
No 422
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=84.31 E-value=2.3 Score=34.94 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=29.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|+|| |.+|+.++..|+..+.. .+++++.+....
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~~~~ 37 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDINEEK 37 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEccccc
Confidence 57999999 99999999999776542 389999987433
No 423
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=84.12 E-value=2.5 Score=35.79 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=32.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |-.|..++..|...|.. +|++..|+..+
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~--~I~V~nRt~~r 217 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPK--QIMLANRTIEK 217 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCC--EEEEECCCHHH
Confidence 57899999999 66789999999988764 89999998543
No 424
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.11 E-value=2.4 Score=33.42 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|..++..|+..|. +|++..++...
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~ 39 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGM---DVWLLDSDPAA 39 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence 57888865 9999999999999986 79999987544
No 425
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.07 E-value=2.5 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=32.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~ 102 (121)
+.|++|+|.|.+|.+|..++..|++.+. .|++. .|..
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~~~rT~ 193 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIAHSRTR 193 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEECCCCC
Confidence 5799999999999999999999999886 67777 3553
No 426
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.06 E-value=2.4 Score=35.56 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=32.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |-+|..++..|...|. .+|++..|+..+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~--~~V~v~~r~~~r 218 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV--RKITVANRTLER 218 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC--CeEEEEeCCHHH
Confidence 57899999987 9999999999988765 379999997543
No 427
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=83.99 E-value=2.2 Score=33.13 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=29.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.+|+|.||+|.+|..++......|. +|++..++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~---~v~~~~~~~ 174 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGC---HVIGTCSSD 174 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCC---eEEEEeCcH
Confidence 3578999999999999988777777665 677777754
No 428
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=83.98 E-value=2.9 Score=31.61 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=29.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+++|+|++|-+|..++......|. +|++..++.
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~ 174 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGA---RVFTTAGSD 174 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 478999999999999998888777775 677777753
No 429
>PLN00203 glutamyl-tRNA reductase
Probab=83.89 E-value=2.2 Score=37.25 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=32.9
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |-+|..+++.|...|. .+|++..|+..+
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~--~~V~V~nRs~er 302 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGC--TKMVVVNRSEER 302 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCC--CeEEEEeCCHHH
Confidence 45799999999 9999999999998875 479999997544
No 430
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=83.83 E-value=1.9 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=25.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+|.|++ -+|+++++.|+..|. .++.+++.+
T Consensus 1 kVlvvG~G-GlG~eilk~La~~Gv--g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAG-GIGCELLKNLALMGF--GQIHVIDMD 32 (234)
T ss_pred CEEEECCC-HHHHHHHHHHHHcCC--CeEEEEeCC
Confidence 47888855 489999999999876 488888875
No 431
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.72 E-value=3 Score=33.16 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+++++++|.|++| .|+.++.+|...|. .+|+++.|+..+
T Consensus 123 ~~~k~vlvlGaGG-aarai~~aL~~~G~--~~i~I~nRt~~k 161 (282)
T TIGR01809 123 LAGFRGLVIGAGG-TSRAAVYALASLGV--TDITVINRNPDK 161 (282)
T ss_pred cCCceEEEEcCcH-HHHHHHHHHHHcCC--CeEEEEeCCHHH
Confidence 3578999998865 57999999998875 489999998543
No 432
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.64 E-value=2.7 Score=33.81 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+||+|-+|...+......|. +|++..++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~---~Vi~~~~~~ 193 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC---YVVGSAGSS 193 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence 468999999999999998866666664 677776653
No 433
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.58 E-value=4.9 Score=32.26 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=30.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|+|.|.|+ |.+|+.++..|+..+. +.+|+++.|+...
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~ 37 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAK 37 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchh
Confidence 47899998 9999999999999874 2489999997654
No 434
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.49 E-value=3.1 Score=34.27 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=33.0
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++.+|+|.|++| +|++++..|++.|- .++.+++.+.
T Consensus 23 q~~L~~~~VlivG~GG-lGs~~a~~La~~Gv--g~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGG-LGSPALLYLAGAGV--GHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCH-HHHHHHHHHHHcCC--CeEEEEeCCE
Confidence 4567889999999855 79999999999876 4888888753
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.31 E-value=4.1 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|+.++..|+..+. ..+|+++.|+...
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~ 37 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEK 37 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcch
Confidence 47899996 8999999999998864 1379999997654
No 436
>KOG2018|consensus
Probab=83.24 E-value=2.9 Score=35.19 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=30.7
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+++..|+|.|++| +|+|++..|+++|-. +|.+++-+
T Consensus 70 ~kl~~syVVVVG~Gg-VGSwv~nmL~RSG~q--Ki~iVDfd 107 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGG-VGSWVANMLLRSGVQ--KIRIVDFD 107 (430)
T ss_pred HHhcCcEEEEEecCc-hhHHHHHHHHHhcCc--eEEEechh
Confidence 346788899999877 799999999999764 77777654
No 437
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.87 E-value=2.6 Score=33.16 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|..++..|++.++ +|++..|++..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~ 36 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF---QTTLVDIKQEQ 36 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC---cEEEEeCCHHH
Confidence 46888888 9999999999999987 68899887544
No 438
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=82.76 E-value=2.8 Score=33.81 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=31.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.++|.|.||+|-.|+.+++.+.+. ++..-+.++.|..+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence 368999999999999999999887 56667888888754
No 439
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=82.54 E-value=3.5 Score=31.54 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=30.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.+++|+|++|-+|..+++.+...+. +|++..++.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~---~v~~~~~~~ 201 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGA---TVIATAGSE 201 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 3578999999999999999998888876 677777653
No 440
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=1.2 Score=37.37 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
..++|-|||||.|.-++++|++.+. +..+-.|+..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~---~~aLAgRs~~ 41 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGL---TAALAGRSSA 41 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCC---chhhccCCHH
Confidence 4688999999999999999999987 3466667643
No 441
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.38 E-value=3 Score=33.15 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=30.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|..++..++..|+ .|++..+++..
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV---DVLVFETTEEL 40 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC---EEEEEECCHHH
Confidence 47888887 8999999999999987 79999998654
No 442
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=82.32 E-value=3.6 Score=32.92 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.++++++|.||+| .|+.++..|+..+. .+|+++.|+..+
T Consensus 125 ~~~k~vlilGaGG-aarAi~~aL~~~g~--~~i~i~nR~~~k 163 (283)
T PRK14027 125 AKLDSVVQVGAGG-VGNAVAYALVTHGV--QKLQVADLDTSR 163 (283)
T ss_pred cCCCeEEEECCcH-HHHHHHHHHHHCCC--CEEEEEcCCHHH
Confidence 4468899999965 68999999998865 489999997543
No 443
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.31 E-value=3.3 Score=33.83 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=32.1
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+.+++|.|.|. |.+|+.+++.+...|. +|++..|+..
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~---~V~~~d~~~~ 180 (330)
T PRK12480 143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA---TITAYDAYPN 180 (330)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence 468899999865 8899999999999887 7888888753
No 444
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=82.29 E-value=3.1 Score=33.83 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+|+|.|| |++|..++.+|.+.|. +|.++.|..
T Consensus 3 ~vvIIGa-G~~G~~~A~~La~~g~---~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGA-GITGVTTAYALAQRGY---QVTVFDRHR 34 (410)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 5777765 9999999999999876 799999864
No 445
>PLN02602 lactate dehydrogenase
Probab=82.20 E-value=5.6 Score=32.92 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=30.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|+|+ |.+|+.++..|+..+- +.+++++++....
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~ 74 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDK 74 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCch
Confidence 69999996 9999999999888743 4589999987654
No 446
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=82.13 E-value=3.5 Score=32.53 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=27.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|.|.|++|-+|+.+++++... +++.-+.+++|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 47999999999999999999876 555455556654
No 447
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.97 E-value=3.6 Score=33.02 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=26.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|+|. |.|.+|..+.+.|.+.|+ .+.++.++...
T Consensus 4 ~~v~Iv-G~GliG~s~a~~l~~~g~---~v~i~g~d~~~ 38 (279)
T COG0287 4 MKVGIV-GLGLMGGSLARALKEAGL---VVRIIGRDRSA 38 (279)
T ss_pred cEEEEE-CCchHHHHHHHHHHHcCC---eEEEEeecCcH
Confidence 456664 599999999999999998 56666665544
No 448
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=81.91 E-value=3.2 Score=34.46 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=34.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|+ |=+|.-.+++|.+.|. .+|++..|....
T Consensus 172 l~~k~vLvIGa-Gem~~l~a~~L~~~g~--~~i~v~nRt~~~ 210 (338)
T PRK00676 172 SKKASLLFIGY-SEINRKVAYYLQRQGY--SRITFCSRQQLT 210 (338)
T ss_pred ccCCEEEEEcc-cHHHHHHHHHHHHcCC--CEEEEEcCCccc
Confidence 57899999999 9999999999999876 489999998643
No 449
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=81.90 E-value=3 Score=32.46 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.+.+|+|.|++|.+|..++......|. +|+++.++..
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~---~vi~~~~~~~ 198 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGA---KVIAVTSSES 198 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence 467999999999999999888777765 6888887643
No 450
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.81 E-value=3.1 Score=32.62 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.|.| .|.+|..++..|.+.+. +|++..|++.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~---~V~~~d~~~~ 34 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH---TVYGVSRRES 34 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 4688887 79999999999999876 7899888643
No 451
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=81.71 E-value=7.1 Score=28.22 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=31.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
++|++|.|.|.+..+|..++..|.+.+. .|+...+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga---tV~~~~~~ 61 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA---TVYSCDWK 61 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeCCC
Confidence 5899999999999999999999999876 67766653
No 452
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=81.41 E-value=3.3 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.3
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
...+.+.+|+|.|++| +|+++++.|+..|. ++|++.+.+
T Consensus 14 q~kL~~s~VLIvG~gG-LG~EiaKnLalaGV--g~itI~D~d 52 (286)
T cd01491 14 MKKLQKSNVLISGLGG-LGVEIAKNLILAGV--KSVTLHDTK 52 (286)
T ss_pred HHHHhcCcEEEEcCCH-HHHHHHHHHHHcCC--CeEEEEcCC
Confidence 4567889999999887 69999999999976 488887754
No 453
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.37 E-value=3.2 Score=35.41 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=32.1
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+.+++|+|.|. |.+|..++..+...|. +|++..+++.+
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga---~ViV~d~dp~r 247 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA---RVIVTEVDPIC 247 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCchh
Confidence 47899999996 7899999999999886 68888887544
No 454
>PRK06444 prephenate dehydrogenase; Provisional
Probab=81.36 E-value=2.9 Score=31.94 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=23.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPH 91 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~ 91 (121)
+++.|.||+|-+|+++++.+.+.|+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~ 26 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLG 26 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCE
Confidence 47999999999999999999998874
No 455
>PLN02256 arogenate dehydrogenase
Probab=81.33 E-value=3.6 Score=33.26 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=30.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.++|.|.| .|.+|+.++..|.+.+. +|++..|+.
T Consensus 33 ~~~~~kI~IIG-~G~mG~slA~~L~~~G~---~V~~~d~~~ 69 (304)
T PLN02256 33 KSRKLKIGIVG-FGNFGQFLAKTFVKQGH---TVLATSRSD 69 (304)
T ss_pred cCCCCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEEECcc
Confidence 34668999999 69999999999998764 788888874
No 456
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=81.22 E-value=4.1 Score=31.48 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=29.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.|++|.+|..++..+.+.|. +|+++.++.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~---~vi~~~~~~ 180 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA---RVVGIAGSD 180 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 468999999999999999888777765 677777653
No 457
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=81.14 E-value=3.6 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=27.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
|+|+|.|| |++|..++.+|.+.+. +|.++.|..
T Consensus 1 ~~v~IVG~-Gi~Gls~A~~l~~~g~---~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGS-GVIGVTSAWYLAQAGH---EVTVIDRQP 33 (416)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 35777765 9999999999999876 799999863
No 458
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.11 E-value=6 Score=33.20 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.7
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+++++|+|.|+ |.+|..+++.|.+.|. +|+++.+..
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~---~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGA---RVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 56789999997 7799999999998886 688887653
No 459
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=81.10 E-value=3.3 Score=31.61 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+|++|.+|..++......|. +|++..++.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~ 167 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGA---HVVAVVGSP 167 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 478999999999999999888888775 688887754
No 460
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=81.09 E-value=3.5 Score=31.69 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+|+|.|++|.+|..++......|. +|++..++.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~ 181 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGY---TVVALTGKE 181 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 45899999999999999876666665 588887764
No 461
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.04 E-value=2.9 Score=33.26 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.|+ |.+|...+..+...+. +|+++.+++
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~---~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGA---AVVAIDIDP 200 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC---eEEEEcCCH
Confidence 4789999999 9999998877777664 678777754
No 462
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=81.01 E-value=3.6 Score=33.52 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=32.6
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++.+|+|.|++| +|+.++..|...|- .++++.+.+.
T Consensus 21 Q~KL~~SrVLVVG~GG-LGsEVAKnLaLAGV--GsItIvDdD~ 60 (287)
T PTZ00245 21 QQQLMHTSVALHGVAG-AAAEAAKNLVLAGV--RAVAVADEGL 60 (287)
T ss_pred HHHHhhCeEEEECCCc-hHHHHHHHHHHcCC--CeEEEecCCc
Confidence 3457788999999988 89999999999876 4888877643
No 463
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=80.99 E-value=3.1 Score=33.71 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=26.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+.+|+|+||+|-+|+..+.-....|.. .|....++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~--~v~~~~s~ 177 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGAT--VVAVVSSS 177 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCc--EEEEecCH
Confidence 789999999999999999777777642 44444443
No 464
>KOG0023|consensus
Probab=80.94 E-value=4.3 Score=34.02 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.|+.+.|+|++| +|+--+..-.+.|. +|+++.++..
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~---rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGM---RVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCc---EEEEEeCCch
Confidence 689999999999 99988888888887 8999999863
No 465
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.88 E-value=6 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
+|.|.|+ |.+|+.++..|+..+ -+.+++++++....
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~ 36 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNEGV 36 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcch
Confidence 5788898 999999999998864 34689999986554
No 466
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.80 E-value=4.2 Score=32.60 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
+.+++++|.|+ |-+|..++..|...|. +|++..|+..
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga---~V~v~~r~~~ 186 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGA---NVTVGARKSA 186 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence 35799999997 6699999999999875 7999999743
No 467
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=80.71 E-value=5.8 Score=25.00 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=25.1
Q ss_pred cCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 72 GGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
=|+|++|.+++..|.+.+. +|+++.|.+.-
T Consensus 5 iGgG~ig~E~A~~l~~~g~---~vtli~~~~~~ 34 (80)
T PF00070_consen 5 IGGGFIGIELAEALAELGK---EVTLIERSDRL 34 (80)
T ss_dssp ESSSHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred ECcCHHHHHHHHHHHHhCc---EEEEEeccchh
Confidence 3679999999999999875 79999986443
No 468
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=80.62 E-value=4.6 Score=30.98 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+|++|.+|..++..+...|. +|+++.++.
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~---~v~~~~~~~ 177 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGA---TVVGAAGGP 177 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 467899999999999999887777765 688877653
No 469
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.47 E-value=3.6 Score=32.37 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=29.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|+.++..++..|+ +|++..++...
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~ 38 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGF---DVTIYDISDEA 38 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence 57888875 9999999999998877 79999987543
No 470
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=80.35 E-value=2.9 Score=33.92 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=25.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|+|.|++| +|+++++.|+..|- .++.+++.+
T Consensus 1 kVlVVGaGG-lG~eilknLal~Gv--g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGG-LGCELLKNLALSGF--RNIHVIDMD 32 (291)
T ss_pred CEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence 478888665 79999999999875 488887753
No 471
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.17 E-value=4.9 Score=30.56 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=29.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.|++|.+|..++......|. +|+++.++.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~---~v~~~~~~~ 177 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGA---TVTATTRSP 177 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 467999999999999999887777765 577777654
No 472
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.10 E-value=4.1 Score=32.04 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
++|.|.|+ |.+|..++..++..|+ +|++..+++..
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY---DVTIVDVSEEI 38 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence 57888876 9999999999999987 69999987544
No 473
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=80.03 E-value=3.8 Score=30.24 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=29.0
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.+|+|.|++|.+|..++......+. +|++..++.
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~ 139 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQHLGA---EVFATAGSP 139 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence 3578999999999999998876666654 677777654
No 474
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.00 E-value=4.3 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=26.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+|+|.|+ |-+|++++..|++.|. .++++++.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv--g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV--GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCE
Confidence 4788886 6689999999999876 4888888764
No 475
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=79.85 E-value=2.6 Score=31.59 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.9
Q ss_pred cCC--ChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 72 GGT--GFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 72 Gat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
|++ +-||..++++|++.|. +|++..|+...
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga---~V~~~~~~~~~ 32 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA---NVILTDRNEEK 32 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE---EEEEEESSHHH
T ss_pred CCCCCCChHHHHHHHHHHCCC---EEEEEeCChHH
Confidence 566 8999999999999987 79999998643
No 476
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=79.80 E-value=4.4 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=28.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.|.|+ |.+|+.++..|++.++ .|++..|++.
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGH---DVTLWARDPE 35 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCHH
Confidence 47888885 8999999999999887 6888888643
No 477
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.66 E-value=4.4 Score=32.20 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=26.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
.+.+|+|.|+ |.+|...+......|. +|++..++..+
T Consensus 165 ~g~~VlV~G~-g~iG~~a~~~a~~~G~---~vi~~~~~~~~ 201 (329)
T TIGR02822 165 PGGRLGLYGF-GGSAHLTAQVALAQGA---TVHVMTRGAAA 201 (329)
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHHCCC---eEEEEeCChHH
Confidence 4779999998 8899776654444443 68888887544
No 478
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=79.66 E-value=4.6 Score=31.06 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=29.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.||+|.+|..++......|. ++++.+++.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~~~ 174 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGI---NVINLVRRD 174 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecCH
Confidence 468999999999999999887777765 577766643
No 479
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=79.63 E-value=4.2 Score=31.59 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=27.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~ 102 (121)
+.+|+|.||+|.+|..++...... |. +|++.+++.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~---~vi~~~~~~ 184 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGL---TVIATASRP 184 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCC---EEEEEcCcH
Confidence 779999999999999987655544 55 688777654
No 480
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.61 E-value=4.3 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.+.|- |-.|+.+++.|++.++ .|++..|++.
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~---~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGY---EVTVYDRSPE 35 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTT---EEEEEESSHH
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCC---eEEeeccchh
Confidence 46777776 8999999999999987 7999988753
No 481
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=79.55 E-value=7.1 Score=31.08 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+|+|+|+ |-+|...+..+...+. +|+++.|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~---~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGF---EVYVLNRR 205 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC---eEEEEecC
Confidence 5789999986 9999998865555544 68888884
No 482
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.31 E-value=4.4 Score=34.72 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=30.2
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+++++|+|+ |-+|..++..|.+.|. +|++..|+.
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~---~V~i~~R~~ 365 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGA---ELLIFNRTK 365 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 35789999996 7899999999999876 688888864
No 483
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.21 E-value=4 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=24.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+|.|.|+ |.+|+..+..+.+..+.+.-+.+..++
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 6888888 777999999999986664334444444
No 484
>PLN02928 oxidoreductase family protein
Probab=79.16 E-value=4.3 Score=33.38 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=31.6
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.|+++.|.|. |-||+.+++.+...|. +|++..|+
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~---~V~~~dr~ 191 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGV---KLLATRRS 191 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCC---EEEEECCC
Confidence 467899999887 8999999999999987 78888886
No 485
>PRK07877 hypothetical protein; Provisional
Probab=78.78 E-value=3.5 Score=37.45 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=32.2
Q ss_pred hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
...+++.+|+|.|+ | +|++++.+|++.|- +.++++++.+.
T Consensus 102 Q~~L~~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ 141 (722)
T PRK07877 102 QERLGRLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDT 141 (722)
T ss_pred HHHHhcCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCE
Confidence 45577899999999 8 99999999999873 14788887653
No 486
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=78.60 E-value=3.9 Score=33.04 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|+|++|.+|..++......|. ++++.+++.
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~---~vv~~~~s~ 228 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGA---NPVAVVSSE 228 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 467999999999999999877777765 566666643
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.58 E-value=4.6 Score=33.28 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
.++++|.|+ |.+|..+++.|.+.+. .|+++.+++.
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~---~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGY---SVKLIERDPE 265 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence 578999998 9999999999999876 6888887754
No 488
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=78.46 E-value=6 Score=29.69 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.5
Q ss_pred hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
..+.+|+|.|++|.+|..++..+...+. +|++..++.
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~---~v~~~~~~~ 179 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGA---RVIATASAA 179 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC---EEEEEecch
Confidence 3578999999999999999887777765 577776643
No 489
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=78.40 E-value=4.9 Score=31.00 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=28.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.|++|.+|..++......|. +|++...++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~---~vi~~~~~~ 181 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGY---EVVASTGRP 181 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 357999999999999999887777765 577766543
No 490
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=78.35 E-value=3.9 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
+.+|+|.||+|.+|...+..+...+....+|++..++.
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~ 213 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND 213 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH
Confidence 57899999999999998876655432223677777653
No 491
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=78.08 E-value=6 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=31.8
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104 (121)
Q Consensus 62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~ 104 (121)
..+.++|.|.| .|.+|+.++..++..+. ..|+++++++..
T Consensus 3 ~~~~~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~ 42 (321)
T PTZ00082 3 MIKRRKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNI 42 (321)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCch
Confidence 34567999999 59999999998887764 259999987664
No 492
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.02 E-value=6 Score=29.92 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=27.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~ 101 (121)
+.++|.|.| +|.+|..++..|++.+. .+..+++..|+
T Consensus 3 ~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 3 KKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 457899998 58899999999998752 33357777764
No 493
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=77.95 E-value=6.1 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.6
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
.+.+|+|.|++|.+|..++......|. +|++..++
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~---~v~~~~~~ 170 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGA---TVIGTVSS 170 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEcCC
Confidence 578999999999999999887777765 57777664
No 494
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=77.94 E-value=3.9 Score=34.78 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
..+.+.+|+|.|++| +|+++++.|...|- ..+++++-.
T Consensus 16 ~~L~~s~VlliG~gg-lGsEilKNLvL~GI--g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATA-TGTEILKNLVLPGI--GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence 456788999999888 99999999999865 578887754
No 495
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=77.93 E-value=5 Score=30.97 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=28.7
Q ss_pred cCC-eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDA-SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~-~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+. +|+|.|++|.+|..++..+...|. ++++.+++.
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~---~vi~~~~~~ 180 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGY---EVVASTGKA 180 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 466 999999999999999888777775 566666543
No 496
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=77.90 E-value=5 Score=30.79 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=29.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102 (121)
Q Consensus 64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~ 102 (121)
.+.+|+|.|++|.+|..++..+...|. ++++..++.
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~---~v~~~~~~~ 173 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGF---KTINVVRRD 173 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecCh
Confidence 467999999999999999888888765 677777654
No 497
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=77.89 E-value=6.2 Score=30.84 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP 101 (121)
Q Consensus 65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~ 101 (121)
+.+|+|+|++|.+|..++......|. +|++..++
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~~ 196 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGA---HVTTTCST 196 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCc
Confidence 78999999999999999887777765 57777654
No 498
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.76 E-value=4.5 Score=31.13 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=29.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK 103 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~ 103 (121)
++|.|.|+ |.+|+.++..|.+.+.....|++..|+..
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~ 39 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPE 39 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHH
Confidence 57888885 99999999999988732237888888753
No 499
>KOG1210|consensus
Probab=77.67 E-value=3.5 Score=34.28 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105 (121)
Q Consensus 66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~ 105 (121)
+.|+|||++.=+|..++..+...|. .|.+..|+..+.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga---~Vti~ar~~~kl 70 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA---DVTITARSGKKL 70 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC---ceEEEeccHHHH
Confidence 5899999999999999999999987 699999986653
No 500
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.65 E-value=3.9 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=25.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100 (121)
Q Consensus 67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R 100 (121)
+|+|.|++| +|+++++.|++.|- .++++++.
T Consensus 1 kVLIvGaGG-LGs~vA~~La~aGV--g~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGT-LGCNVARNLLGWGV--RHITFVDS 31 (307)
T ss_pred CEEEECCCH-HHHHHHHHHHHcCC--CeEEEECC
Confidence 478888776 79999999999975 47877774
Done!