RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3445
(121 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 70.7 bits (173), Expect = 1e-15
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
+V +TG TGF+G+ LV +LLR + + LVR + + + RLE F+
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSG 126
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 40.2 bits (94), Expect = 3e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFED 117
+V VTG +G G+I+ +KL LVR + + + + D
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGD 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 2e-04
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 28/113 (24%)
Query: 13 TKYKVKPLEITEDIVNSKYYKDPL----QLLGEKNFGRPRKIPKDEIGTPIQEFFRDASV 68
+ K + + + +D L Q+ + N R + ++ + E +V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNV 153
Query: 69 FVTGGTGFMGK-ILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
+ G G GK + + + +++ + +I
Sbjct: 154 LIDGVLGS-GKTWVALDVCLS--------------------YKVQCKMDFKIF 185
Score = 25.2 bits (54), Expect = 8.1
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 22/81 (27%)
Query: 2 ALDLHKKALSSTKYKVKPLEIT-------EDIVNSKYYKDPLQLLGEKNFGRPRKI---- 50
LD + L P ++ + + +K + +K +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDK-LTTIIESSLNV 365
Query: 51 --PKDEIGTPIQEFFRDASVF 69
P + ++ F SVF
Sbjct: 366 LEPAE-----YRKMFDRLSVF 381
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
V + G TG G+ L++++L P L + R + RL+
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE--HPRLDNPVGP 54
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 37.7 bits (88), Expect = 3e-04
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKH-IYLLVRP 101
P+ V G TG +G + A H + L+ RP
Sbjct: 5 QPLSRPGAHVKYAVLGATGLLGHHAARAIRAA----GHDLVLIHRP 46
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 37.3 bits (86), Expect = 4e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFED 117
+ + G TG G ++E+ H + +VR K + + + +D
Sbjct: 3 IGIIGATGRAGSRILEEAKNR-GH--EVTAIVRNAGKITQTHKDINILQKD 50
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 37.0 bits (86), Expect = 5e-04
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 16/54 (29%)
Query: 68 VFVTGGTGFMGKILVEKLL------RAIPHLKHIYLLVR-PKKGKAVQERLEAI 114
+ + G +GF+G L+ + L A +VR P+K K E L+
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVTA---------VVRHPEKIKIENEHLKVK 51
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 36.5 bits (84), Expect = 7e-04
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113
+ + G G + + L LL HI L R K + E ++
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIIDH 51
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100
SVF+ G +G G++L++++L + L+ R
Sbjct: 20 SVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKH-IYLLVRPKKGKAVQERLEAIFEDR 118
+ + G TG++G+ + + L H +LLVR + E+ + + +
Sbjct: 6 RILLIGATGYIGRHVAKASLDL----GHPTFLLVRESTASSNSEKAQLLESFK 54
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQ-ERLEAIFED 117
V + G G + + ++ +L L R P K + I D
Sbjct: 26 VLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIHKPYPTNSQIIMGD 75
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 59 IQEFFRDASVFVTGGTGFMGKILVEKLL 86
Q + ++ +TGGTG GK V K+L
Sbjct: 15 HQNMLDNQTILITGGTGSFGKCFVRKVL 42
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
+F+ G TG +GK L++ L + IY R + ++A+ D
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTT-DY--QIYAGARKVEQVPQYNNVKAVHFD 49
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 34.7 bits (80), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100
V +TG G +G+ L +L H + LVR
Sbjct: 150 VAITGSRGLVGRALTAQLQTG-GH--EVIQLVR 179
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 34.6 bits (80), Expect = 0.004
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQER 110
V V G G + + L+ +L H +VR ++G ++ER
Sbjct: 24 VLVVGANGKVARYLLSELKNK-GH--EPVAMVRNEEQGPELRER 64
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 34.2 bits (78), Expect = 0.005
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ V G TG G +V + R
Sbjct: 3 IAVLGATGRAGSAIVAEARRR 23
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 34.1 bits (78), Expect = 0.006
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 36 LQLLGEKNFGRPRKIPKDEIGTPIQEFFR-DASVFVTGGTGFMGKILVEKLLRAIPHLKH 94
+Q+ E+ PR +P + + F S +TGG G G L + L +
Sbjct: 1854 IQVREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLR--GAQK 1911
Query: 95 IYLLVRPKKGKAVQERLEAIFEDR 118
+ L R Q R + +
Sbjct: 1912 LVLTSRSGIRTGYQARQVREWRRQ 1935
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 34.1 bits (78), Expect = 0.006
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG 104
V + GGTG++GK +V + H Y+L RP+
Sbjct: 6 RVLIVGGTGYIGKRIVNASISL-GH--PTYVLFRPEVV 40
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 33.6 bits (77), Expect = 0.008
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 46 RPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK 105
R + GT + D +V VTG +L R H+ L P +
Sbjct: 232 RLVRASLPAHGTASPWWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTTPSGSE 289
Query: 106 AVQERLEA 113
+ A
Sbjct: 290 GAEGTSGA 297
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 33.7 bits (77), Expect = 0.009
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
+ + G TG +G+ +V ++A + Y LVR A E E + ++
Sbjct: 4 KILILGPTGAIGRHIVWASIKA-GN--PTYALVRKTITAANPETKEELIDN 51
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 33.4 bits (77), Expect = 0.010
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ VTG G +G + L
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTL 25
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 33.6 bits (76), Expect = 0.010
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 67 SVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVR-PKKGKAVQERLEAIFED 117
+ G TG +G L E L A +Y + R + + + D
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCD 56
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 33.1 bits (75), Expect = 0.012
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
V + G TGF+G+ + L A Y+L RP + ++ ED+
Sbjct: 12 RVLIAGATGFIGQFVATASLDA-HR--PTYILARPGPRSPSKAKIFKALEDK 60
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.0 bits (75), Expect = 0.013
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA 106
+ + GGTG++G +V+ L+ H Y+ RP K
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKL-GH--PTYVFTRPNSSKT 49
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 33.0 bits (76), Expect = 0.014
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
V GGTGF+ +LV+ LL+
Sbjct: 12 ACVVGGTGFVASLLVKLLLQK 32
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 32.7 bits (75), Expect = 0.015
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ VTG G +G+++ E+L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPM 26
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 32.9 bits (75), Expect = 0.016
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 60 QEFFRDASVFVTGGTGFMGKILVEKLLR 87
F++ VFVTG TGF G L L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 32.6 bits (75), Expect = 0.018
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
V VTGGTGF+G +++ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLLEN 24
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 32.6 bits (75), Expect = 0.021
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
V VTG +GF+G LV +LL
Sbjct: 8 VCVTGASGFIGSWLVMRLLER 28
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.9 bits (73), Expect = 0.024
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQER 110
+ + G TG G + + ++A + + +LVR + + R
Sbjct: 6 IAIFGATGQTGLTTLAQAVQA-GY--EVTVLVRDSSRLPSEGPR 46
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 32.3 bits (74), Expect = 0.025
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQER 110
++ +TG TG +G + + + H+ H ++ VR +K
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRG 44
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.3 bits (74), Expect = 0.026
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 68 VFVTGGTGFMGKILVEKLL------RAIPHLKHIYLLVR-PKKGKAVQERLEAIFEDRI 119
V VTG GF+ +VE+LL R R K +Q+R +A + R
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGT---------ARSASKLANLQKRWDAKYPGRF 63
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 32.0 bits (73), Expect = 0.034
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ + G G +G+ L ++L++
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKD 37
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 31.9 bits (73), Expect = 0.037
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQER 110
S+ VTG TG +G ++++ LL+ +P I +VR +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQ 45
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 31.4 bits (71), Expect = 0.045
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116
+ + GGTG++GK +V L H ++ RP + ++ E
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSF-SH--PTFIYARPLTPDSTPSSVQLREE 52
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 31.5 bits (72), Expect = 0.047
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 63 FRDASVFVTGGTGFMGKILVEKLLRAIPH 91
+ +V V GG GF+G LV++LL +
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN 58
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 31.5 bits (72), Expect = 0.048
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 70 VTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQER 110
+TG TG +G ++E L++ +P I +VR P K +A+ +
Sbjct: 4 ITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAAQ 44
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 31.1 bits (71), Expect = 0.054
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQ---------ERLEAIFED 117
+ VTG +G +G LV L I + + ++ + ++ E
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEK 60
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 31.2 bits (71), Expect = 0.057
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
+ +TG GF+ + +L
Sbjct: 32 ISITGAGGFIASHIARRLKH 51
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 30.4 bits (69), Expect = 0.098
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
V + G GF+G L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 30.5 bits (69), Expect = 0.10
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 46 RPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLR 87
+ E T + V + G GF+G L +++L
Sbjct: 5 HHHHMGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILE 46
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 30.3 bits (69), Expect = 0.11
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 59 IQEFFRDASVFVTGGTGFMGKILVEKLLR 87
I + + ++ +TGG GF+G L
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQE 32
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 30.0 bits (68), Expect = 0.14
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKA 106
V V GGTG G + LL + ++ R P+K A
Sbjct: 8 VVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAA 45
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 29.9 bits (68), Expect = 0.18
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 68 VFVTGGTGFMGKILVEKLLRAI 89
+ + G G +G L +KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLY 26
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 29.4 bits (67), Expect = 0.22
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ +TGG GF+G L L+ +
Sbjct: 10 ILITGGAGFIGGHLARALVAS 30
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 29.3 bits (66), Expect = 0.29
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
+ +TGG GF+G L +KL+
Sbjct: 30 ILITGGAGFVGSHLTDKLMM 49
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.2 bits (66), Expect = 0.31
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 64 RDASVFVTGGTGFMGKILVEKLLRA 88
+ +TG GF+G L+E LL+
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLKL 50
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.0 bits (66), Expect = 0.36
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ VTGG GF+G LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVEL 23
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 28.7 bits (65), Expect = 0.36
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
+ VTGGTGF+G+ +VE +
Sbjct: 5 IAVTGGTGFLGQYVVESIKN 24
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 28.7 bits (65), Expect = 0.36
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
VF+TG G +G + E LL
Sbjct: 24 VFITGICGQIGSHIAELLLER 44
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.1 bits (65), Expect = 0.36
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 68 VFVTGGTGFMGKILVEKLL 86
+ +TG GF+GK L L
Sbjct: 3 IVITGAKGFVGKNLKADLT 21
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 28.8 bits (65), Expect = 0.37
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
+TG GF+G L+EKLL+
Sbjct: 28 WLITGVAGFIGSNLLEKLLK 47
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 28.9 bits (65), Expect = 0.37
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPH-LKHIYLLVR--PKKGKAVQ--ERL 111
T + +V VTGGTG +G + L I ++++ L+ R P A + +L
Sbjct: 522 TMPPVWDAAGTVLVTGGTGALGAEVARHL--VIERGVRNLVLVSRRGPAASGAAELVAQL 579
Query: 112 EA 113
A
Sbjct: 580 TA 581
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 28.7 bits (65), Expect = 0.40
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ VTGG GF+G +V+ L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK 22
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.8 bits (65), Expect = 0.40
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 49 KIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA 88
+ ++GT + VTGG GF+G +V+ L
Sbjct: 30 HMDSPDLGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDK 69
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 28.6 bits (65), Expect = 0.43
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
V VTGG GF+G +VE LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLAR 23
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 28.7 bits (65), Expect = 0.47
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 67 SVFVTGGTGFMGKILVEKLLRA 88
+ +TGG G +G L+E L
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ 43
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 27.9 bits (63), Expect = 0.82
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 68 VFVTGGTGFMGKILVEKLLR 87
+ VTGG GF+G +V+KL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE 23
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 27.9 bits (62), Expect = 0.87
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100
+V +TGG G +G+ L +L + + L R
Sbjct: 259 SGTVLITGGMGAIGRRLARRLAAE--GAERLVLTSR 292
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 27.8 bits (62), Expect = 1.0
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100
SV VTGGTG +G + +L H+ L R
Sbjct: 239 HGSVLVTGGTGGIGGRVARRLAEQ--GAAHLVLTSR 272
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 27.7 bits (62), Expect = 1.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 46 RPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR 100
R + T E+ +V VTGGTG +G + L R H+ L+ R
Sbjct: 208 GRRWVRAAAPATD-DEWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSR 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 9/39 (23%)
Query: 92 LKHIYLLVRPKKGKAVQERLEAI---FEDR------IHT 121
L ++ LV P K + L FE+ IH
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Score = 26.2 bits (57), Expect = 3.3
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)
Query: 1 MALDLHK-KALSST-KYKV-----KP------LEITEDIVNSKYYKDPLQLLGEKNFGRP 47
+ L L K KA S + ++ K L + +S L+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHSHLLVPASDLINKDLVKNN 447
Query: 48 RKIPKDEIGTPIQEFFRDASVFVTGGTG----FMGKILVEKLLRAI 89
+I P V+ T G + + E+++ I
Sbjct: 448 VSFNAKDIQIP---------VYDT-FDGSDLRVLSGSISERIVDCI 483
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 27.5 bits (61), Expect = 1.3
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKA 106
+ V G TG G L+ H H+ V K A
Sbjct: 8 IAVVGATGRQGASLIRVAAAV-GH--HVRAQVHSLKGLIA 44
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 26.8 bits (60), Expect = 1.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 47 PRKIPKDEIGTPIQEFFRDAS-----VFVTGGTGFMGKILVEKLLRA 88
P + D+ + F F+TGG +G + E +R
Sbjct: 4 PPDVEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRH 50
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 26.2 bits (58), Expect = 2.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 41 EKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA 88
E FGRP +I D + I + +F+ GTG ++VE + +
Sbjct: 88 EGAFGRPVRIVNDALMQAIGSYNGGRMLFLGLGTGLGAAMIVENVAQP 135
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural
genomics, joint center for structu genomics, JCSG; HET:
MSE; 1.90A {Klebsiella pneumoniae subsp}
Length = 384
Score = 26.6 bits (58), Expect = 2.7
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 20 LEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQE 61
+ + + N Y Q++ NFG P PI
Sbjct: 190 FSLHDVLTNHADYPHDYQIIYHSNFGTPILEEGARFLAPISS 231
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B;
3D-structure, structural genomics, NPPSFA; HET: PEG;
1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Length = 178
Score = 26.1 bits (58), Expect = 2.8
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 17/79 (21%)
Query: 48 RKIPKDEIGTPIQEFFRDAS-------VFVTGGTGFMG--------KILVEKLLRAIPHL 92
+ D+ I + F DA + TGGTG+ + L ++ + +
Sbjct: 59 YSLVPDDKIK-ILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFDREIEGFSDV 117
Query: 93 KHIYLLVRPKKG-KAVQER 110
+ P+ A +
Sbjct: 118 FRLVSFNDPEVKAAAYLTK 136
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 26.2 bits (58), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPH 91
P R V + G GF+G L E+LLR +
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHY 341
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 26.0 bits (57), Expect = 3.4
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
+ V GTG +G L + + K +A + + F+ +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR--KLDKAQAAADSVNKRFKVNVT 172
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 26.0 bits (56), Expect = 3.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 70 VTGGTGFMGKILVEKLLRA 88
+ GGTG +GK L +L
Sbjct: 5 LLGGTGNLGKGLALRLATL 23
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 25.9 bits (58), Expect = 3.8
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 67 SVFVTGGTGFMG 78
++ VTGG G++G
Sbjct: 7 TILVTGGAGYIG 18
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 25.9 bits (58), Expect = 4.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 67 SVFVTGGTGFMG 78
V VTGG+G++G
Sbjct: 2 RVLVTGGSGYIG 13
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 25.4 bits (55), Expect = 4.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 72 GGTGFMGKILVEKLLRA 88
GTG GK L K+L+
Sbjct: 25 FGTGDFGKSLGLKMLQC 41
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 25.3 bits (56), Expect = 4.8
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 48 RKIPKDEIGTPIQEFFRDAS-------VFVTGGTGF 76
+ I K+ I+ V +TGGTG
Sbjct: 47 KAIVKENRYA-IRAQVSAWIASDDVQVVLITGGTGL 81
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 25.7 bits (57), Expect = 5.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA---VQERLEA 113
F+ V V GG G VE + ++H+ LL + KA +Q+++ +
Sbjct: 352 LFKGKRVAVIGG----GNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRS 402
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 25.3 bits (56), Expect = 6.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 68 VFVTGGTGFMGKILVEKLLRA 88
+ V GG+G +G +V+
Sbjct: 25 ILVLGGSGALGAEVVKFFKSK 45
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 25.2 bits (56), Expect = 6.4
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 11/41 (26%)
Query: 68 VFVTGGTGFMGKILVEKLL-----------RAIPHLKHIYL 97
+TG GF+GK L L L ++ +
Sbjct: 15 ALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEM 55
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 25.3 bits (55), Expect = 6.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 73 GTGFMGKILVEKLLRAIPHLKHIYLLVR 100
G+G +G L+ K+LR +L+ ++
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGI 38
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E
from borne encephalitis virus, membrane protein M,
cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico}
SCOP: i.17.1.1
Length = 495
Score = 25.3 bits (55), Expect = 6.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLL 86
IG + + F G + KIL+ ++
Sbjct: 432 IGKALHQVFGAIYGAAFSGVSWTMKILIGVII 463
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 24.9 bits (55), Expect = 6.9
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 48 RKIPKDEIGTPIQEFFRDAS------VFVTGGTGF 76
+ + I+ A V GGTG
Sbjct: 68 VVAVEADE-VDIRNALNTAVIGGVDLVVSVGGTGV 101
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 24.8 bits (54), Expect = 7.4
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 39 LGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGG 73
+ E + +P E FF G
Sbjct: 97 MHENDRSATGFLPPPEFEKAADWFFAHPEESFQGW 131
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics,
protein structure initiative, PSI, MCSG, midwest center
for structural genomics; 1.90A {Bacillus cereus} SCOP:
c.57.1.1
Length = 169
Score = 24.9 bits (55), Expect = 7.5
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 48 RKIPKDEIGTPIQEFFRDAS-------VFVTGGTGF 76
+I KD+ + IQ+ V GGTG
Sbjct: 50 YEIVKDDKES-IQQAVLAGYHKEDVDVVLTNGGTGI 84
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural
genomics, PSI, protein structure initiative; 1.50A
{Corynebacterium diphtheriae} SCOP: c.57.1.1
Length = 167
Score = 24.9 bits (55), Expect = 7.5
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 48 RKIPKDEIGTPIQEFFRDAS------VFVTGGTGF 76
+ + + E A + GGTG
Sbjct: 48 EVVVPEGY-DTVVEAIATALKQGARFIITAGGTGI 81
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 24.9 bits (55), Expect = 7.6
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
V G +G +L++ +LK+ +L R + A+ E + I
Sbjct: 8 VIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKVNIT 58
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 25.0 bits (55), Expect = 8.4
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 38 LLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL 97
L+G + I +E +Q + V GG G +G+ + +++ + P + +++
Sbjct: 10 LIGRDTELFHQDINANE--KELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHV 65
Query: 98 L 98
+
Sbjct: 66 V 66
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQE 109
S+ +TG +G LV+ LL +H++ R ++ K +++
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED 66
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 23.9 bits (52), Expect = 9.1
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 46 RPRKIPKDEIGTPIQEFFRDASVFVTGGTG-----------FMGKILVEK 84
R R + + I I+ +A V V G G F+GK + +
Sbjct: 2 RKRPLDAETIRKLIESGLPEARVDVQGEDGVHFEATVVSPAFVGKAPLAR 51
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 24.8 bits (55), Expect = 9.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 68 VFVTGGT------------GFMGKILVEKLLRAIPHLKHI 95
+ TGGT +GK+ VE L+ A+P LK I
Sbjct: 6 ILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDI 45
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 24.7 bits (54), Expect = 9.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 67 SVFVTGGTGFMG 78
V VTGG G++G
Sbjct: 13 IVLVTGGAGYIG 24
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 24.8 bits (54), Expect = 9.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 52 KDEIGTPIQEFFRDASVFVTGGTGFMGK 79
DE G + ++ F+ G F GK
Sbjct: 439 FDESGRLL--VRNQSTTFIVGAGKFGGK 464
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.402
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,927,399
Number of extensions: 114708
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 121
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)