RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3446
(166 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 81.5 bits (201), Expect = 6e-19
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 69 VRAMLELAREIRQLKLFLR-----LKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLRT 123
VRA + R K F L+ +++ VAGD S P LGL + L
Sbjct: 107 VRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAE 166
Query: 124 NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELAREIR 163
V++I AA V +L NV G ++ +A +
Sbjct: 167 TVDLIVDSAAMVNAFPYHEL-FGPNVAGTAELIRIALTTK 205
Score = 80.7 bits (199), Expect = 1e-18
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 1 LFLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGAATVRFDEKIQL 60
L+ +++ VAGD S P LGL + L V++I AA V +L
Sbjct: 127 DPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHEL 186
Query: 61 AVAINVLGVRAMLELAREIR 80
NV G ++ +A +
Sbjct: 187 -FGPNVAGTAELIRIALTTK 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 4e-06
Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 54/180 (30%)
Query: 23 VSLPGLGLSE------TDRELLRT--NVNVIFHGAATVRFDEKIQLAVAINVLGVRAM-- 72
+S P +G+ + T + L T + GA + + AVAI A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTAVAI------AETD 287
Query: 73 -----LELAREIRQLKLF---LRLKTEVPHFLEKISAVAGDV-----------SLPGLGL 113
R+ + LF +R P+ S + + S+ L
Sbjct: 288 SWESFFVSVRKAITV-LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 114 SETDRELLRTNVNVIFHGAATVRFDEKIQLAVAIN-----VL-G-VRAMLELAREIRQLK 166
+ + +TN H A +++++++ +N V+ G +++ L +R+ K
Sbjct: 347 EQVQDYVNKTNS----HLPA----GKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Score = 28.1 bits (62), Expect = 1.7
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 70/171 (40%)
Query: 36 ELLR----TNVNVIF--H--G--AATVRFDEKIQLAVAINVLGVRAMLELAREIRQLKLF 85
E L+ + F H G AA ++A +V+ + +++E+ +F
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALA--------SLA-DVMSIESLVEV--------VF 1787
Query: 86 LR---LKTEVPHF---LEKISAVAGDVSLPGLGLSETDRELL------RTN-----VN-- 126
R ++ VP +A + S+ + + RT VN
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 127 ------VIFHGAATVR--------FDE-KIQ------LAVAINVLGVRAML 156
V A +R + K+Q L ++++ V L
Sbjct: 1848 VENQQYVA---AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 40.4 bits (95), Expect = 9e-05
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 14 EKISAVAGDVSLPGLGLSETDRELLRT-----NVNVIFHGAA--TVRFDEKIQLAVAINV 66
I + DV ++R+ + +++ IFH A + + ++ LA +N+
Sbjct: 39 GGIKFITLDV---------SNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNM 89
Query: 67 LGVRAMLELAREIRQLKLF 85
G +LE A++ R K+
Sbjct: 90 NGTYNILEAAKQHRVEKVV 108
Score = 38.8 bits (91), Expect = 3e-04
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 97 EKISAVAGDVSLPGLGLSETDRELLRT-----NVNVIFHGAA--TVRFDEKIQLAVAINV 149
I + DV ++R+ + +++ IFH A + + ++ LA +N+
Sbjct: 39 GGIKFITLDV---------SNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNM 89
Query: 150 LGVRAMLELARE 161
G +LE A++
Sbjct: 90 NGTYNILEAAKQ 101
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 37.6 bits (88), Expect = 0.001
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 33 TDRELLRT-----NVNVIFHGAA--TVRFDEKIQLAVAINVLGVRAMLELAREIRQLKLF 85
D + + I+ AA + ++ A +N+ + +L LA+ + K+F
Sbjct: 55 LDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 116 TDRELLRT-----NVNVIFHGAA--TVRFDEKIQLAVAINVLGVRAMLELARE 161
D + + I+ AA + ++ A +N+ + +L LA+
Sbjct: 55 LDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKA 107
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/97 (10%), Positives = 23/97 (23%), Gaps = 25/97 (25%)
Query: 69 VRAMLELAREIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLR---TNV 125
+ + R Q++ L+ E ++ D L +
Sbjct: 40 LVL---IHRPSSQIQRLAYLEPEC---------RVAEM---------LDHAGLERALRGL 78
Query: 126 NVIFHGAATVRFDEK-IQLAVAINVLGVRAMLELARE 161
+ + A + Q VA + +
Sbjct: 79 DGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQ 115
Score = 36.1 bits (84), Expect = 0.002
Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 13/64 (20%)
Query: 19 VAGDVSLPGLGLSETDRELLR---TNVNVIFHGAATVRFDEK-IQLAVAINVLGVRAMLE 74
++ D L ++ + A + Q VA +
Sbjct: 61 RVAEM---------LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYA 111
Query: 75 LARE 78
+
Sbjct: 112 ACLQ 115
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 35.1 bits (81), Expect = 0.007
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 4 RLKTEVPHFL-EKISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGAA--TVRFDEKIQL 60
+ E P + A A D+S P +L+ +VIFH AA + +
Sbjct: 53 VFQPEAPAGFSGAVDARAADLSAP-----GEAEKLVEARPDVIFHLAAIVSGEAELDFDK 107
Query: 61 AVAINVLGVRAMLELARE 78
IN+ G R + + R
Sbjct: 108 GYRINLDGTRYLFDAIRI 125
Score = 35.1 bits (81), Expect = 0.007
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 87 RLKTEVPHFL-EKISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGAA--TVRFDEKIQL 143
+ E P + A A D+S P +L+ +VIFH AA + +
Sbjct: 53 VFQPEAPAGFSGAVDARAADLSAP-----GEAEKLVEARPDVIFHLAAIVSGEAELDFDK 107
Query: 144 AVAINVLGVRAMLELARE 161
IN+ G R + + R
Sbjct: 108 GYRINLDGTRYLFDAIRI 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.033
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 14/40 (35%)
Query: 77 REIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSET 116
+ +++L+ LK D S P L + T
Sbjct: 20 QALKKLQA--SLKLYAD-----------D-SAPALAIKAT 45
Score = 27.6 bits (60), Expect = 1.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 13 LEKISA----VAGDVSLPGLGLSET 33
L+K+ A A D S P L + T
Sbjct: 22 LKKLQASLKLYADD-SAPALAIKAT 45
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 32.6 bits (74), Expect = 0.041
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 32 ETDRELLRT---NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELAREIRQLKLF 85
+T E L + + I H A R E + NV + +L++ +
Sbjct: 34 QTKEEELESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Score = 32.2 bits (73), Expect = 0.065
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 115 ETDRELLRT---NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
+T E L + + I H A R E + NV + +L++
Sbjct: 34 QTKEEELESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTR 82
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 32.3 bits (74), Expect = 0.064
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 33 TDRELLRT---NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELAREIRQLKLFL 86
TD LL + + +FH A N L + E + ++LK +
Sbjct: 88 TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVV 147
Score = 31.1 bits (71), Expect = 0.13
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 116 TDRELLRT---NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELAREIRQLK 166
TD LL + + +FH A N L + E + ++LK
Sbjct: 88 TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.066
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 21/98 (21%)
Query: 38 LRTNVNVIFHG---------AATVRFDEKIQLAVAINV----LGVRAMLELAREIRQLKL 84
LR NV+ G A V K+Q + + L E E+ Q KL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KL 205
Query: 85 FLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLR 122
++ P++ + ++ L + EL R
Sbjct: 206 LYQID---PNWTSRSD---HSSNIK-LRIHSIQAELRR 236
Score = 29.8 bits (66), Expect = 0.40
Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 58/181 (32%)
Query: 9 VPHFLEKISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGAATVRFDEKIQLAVAINVLG 68
+ F + + + + + +L D I A++ G
Sbjct: 22 LSVFEDAFVD---NFDCKDV--QDMPKSILSKEE-----------IDHIIMSKDAVS--G 63
Query: 69 VRAMLE--LAREIRQLKLFLR--LKTEVPHFLEKISAVAGDVSLPGLGLSET-DR----- 118
+ L+++ ++ F+ L+ + I S+ E DR
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 119 ---------------EL------LRTNVNVIFHG---------AATVRFDEKIQLAVAIN 148
+L LR NV+ G A V K+Q +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 149 V 149
+
Sbjct: 184 I 184
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 31.6 bits (72), Expect = 0.096
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 69 VRAMLELAREIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLR---TNV 125
+ +A +R L + + V D+ D +
Sbjct: 20 RERLAPMAEILRLADL-----SPLDPAGPNEECVQCDL---------ADANAVNAMVAGC 65
Query: 126 NVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
+ I H + ++ + + N++G+ + E AR
Sbjct: 66 DGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAARA 100
Score = 28.9 bits (65), Expect = 0.82
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 19 VAGDVSLPGLGLSETDRELLR---TNVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLEL 75
V D+ D + + I H + ++ + + N++G+ + E
Sbjct: 48 VQCDL---------ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEA 97
Query: 76 ARE 78
AR
Sbjct: 98 ARA 100
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.5 bits (72), Expect = 0.10
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 19 VAGDVSLPGLGLSETDRELLRTNVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLEL 75
+A D++ P R L + + + +FH AA T +++ L + N +LE+
Sbjct: 73 IAADINNP-----LDLRRLEKLHFDYLFHQAAVSDTTMLNQE--LVMKTNYQAFLNLLEI 125
Query: 76 ARE 78
AR
Sbjct: 126 ARS 128
Score = 31.5 bits (72), Expect = 0.10
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 102 VAGDVSLPGLGLSETDRELLRTNVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLEL 158
+A D++ P R L + + + +FH AA T +++ L + N +LE+
Sbjct: 73 IAADINNP-----LDLRRLEKLHFDYLFHQAAVSDTTMLNQE--LVMKTNYQAFLNLLEI 125
Query: 159 ARE 161
AR
Sbjct: 126 ARS 128
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.8 bits (68), Expect = 0.31
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 33 TDRELLRT--NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 78
T +L+ +V+ + H AAT KI N + + + + E
Sbjct: 52 TLEDLINQLNDVDAVVHLAATRGSQGKIS-EFHDNEILTQNLYDACYE 98
Score = 29.8 bits (68), Expect = 0.31
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 116 TDRELLRT--NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
T +L+ +V+ + H AAT KI N + + + + E
Sbjct: 52 TLEDLINQLNDVDAVVHLAATRGSQGKIS-EFHDNEILTQNLYDACYE 98
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.9 bits (68), Expect = 0.32
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 33 TDRELLRT---NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 78
+ + V+ + H AA I + A N+ G ML AR+
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 142
Score = 29.9 bits (68), Expect = 0.32
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 116 TDRELLRT---NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 161
+ + V+ + H AA I + A N+ G ML AR+
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 142
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.5 bits (67), Expect = 0.42
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 41 NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELARE 78
+V IFH A T +D K + N + +L E
Sbjct: 68 DVEAIFHEGACSSTTEWDGKYMMDN--NYQYSKELLHYCLE 106
Score = 29.5 bits (67), Expect = 0.42
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 124 NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELARE 161
+V IFH A T +D K + N + +L E
Sbjct: 68 DVEAIFHEGACSSTTEWDGKYMMDN--NYQYSKELLHYCLE 106
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.6 bits (67), Expect = 0.43
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 41 NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELARE 78
+V IFH A T +D K + N + +L E
Sbjct: 115 DVEAIFHEGACSSTTEWDGK--YMMDNNYQYSKELLHYCLE 153
Score = 29.6 bits (67), Expect = 0.43
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 124 NVNVIFHGAA---TVRFDEKIQLAVAINVLGVRAMLELARE 161
+V IFH A T +D K + N + +L E
Sbjct: 115 DVEAIFHEGACSSTTEWDGK--YMMDNNYQYSKELLHYCLE 153
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 29.2 bits (66), Expect = 0.56
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 69 VRAMLELAREIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLRT---NV 125
+ LA E+R L + E+I VA D+ D + + +
Sbjct: 19 RPHLGTLAHEVR---LSDIVDLGAAEAHEEI--VACDL---------ADAQAVHDLVKDC 64
Query: 126 NVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
+ I H V + + N++G + E AR
Sbjct: 65 DGIIHLGG-VSVERPWNDILQANIIGAYNLYEAARN 99
Score = 28.8 bits (65), Expect = 0.73
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 33 TDRELLRT---NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 78
D + + + + I H V + + N++G + E AR
Sbjct: 52 ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLYEAARN 99
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.1 bits (66), Expect = 0.62
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 33 TDRELLRT-----NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 78
D L+ + + H AA+ + + N +G +++ A++
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKK 126
Score = 29.1 bits (66), Expect = 0.62
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 116 TDRELLRT-----NVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
D L+ + + H AA+ + + N +G +++ A++
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKK 126
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.5 bits (64), Expect = 1.0
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 28/101 (27%)
Query: 71 AMLELAREIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLRT-----NV 125
M+EL R+IR + A D+ E
Sbjct: 72 NMVELVRDIRSSF---------GYINGDFQTFALDI---------GSIEYDAFIKADGQY 113
Query: 126 NVIFHGAAT--VRFDEK---IQLAVAINVLGVRAMLELARE 161
+ + + +A VR ++ + + +NV ++ + +
Sbjct: 114 DYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSID 154
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 5 LKTEVPHFLEKISAVAGDVSLPGLGLSETDRELLRT-----NVNVIFHGAAT--VRFDEK 57
+++ + A D+ E + + + +A VR ++
Sbjct: 80 IRSSFGYINGDFQTFALDI---------GSIEYDAFIKADGQYDYVLNLSALKHVRSEKD 130
Query: 58 ---IQLAVAINVLGVRAMLELAREIRQLKLFL 86
+ + +NV ++ + + K F
Sbjct: 131 PFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFC 162
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 28.4 bits (64), Expect = 1.2
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 75 LAREIRQLKLFLRLKTEVPHFLEKISAVAGDVSLPGLGLSE---TDRELLRTNV-----N 126
L R + K F + V + D + + +
Sbjct: 14 LGRAVH--KEFQQNNWHA---------VGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPH 62
Query: 127 VIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 162
VI H AA R D + A +NV + + A +
Sbjct: 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV 101
Score = 28.0 bits (63), Expect = 1.6
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 14 EKISAVAGDVSLPGLGLSE---TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAV 62
AV + D + + +VI H AA R D + A
Sbjct: 25 NNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAAS 84
Query: 63 AINVLGVRAMLELAREI 79
+NV + + A +
Sbjct: 85 QLNVDASGNLAKEAAAV 101
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 27.9 bits (63), Expect = 1.5
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 33 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 79
TD L + +VI + AA D + + A IN VR ++ + I
Sbjct: 44 TDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI 98
Score = 27.9 bits (63), Expect = 1.5
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 116 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 162
TD L + +VI + AA D + + A IN VR ++ + I
Sbjct: 44 TDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI 98
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 27.2 bits (61), Expect = 2.6
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 33 TDRELLRT---NVNVIFHGAA--TVRFD-EKIQLAVAINVLGVRAMLELARE 78
D V+ + H AA +V A N+ G +L A+
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKN 140
Score = 27.2 bits (61), Expect = 2.6
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 116 TDRELLRT---NVNVIFHGAA--TVRFD-EKIQLAVAINVLGVRAMLELARE 161
D V+ + H AA +V A N+ G +L A+
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKN 140
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 27.1 bits (61), Expect = 2.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 33 TDRELLRT-NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 78
D +V+FH AA + NV+ +LE AR+
Sbjct: 53 KDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ 102
Score = 27.1 bits (61), Expect = 2.9
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 116 TDRELLRT-NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 161
D +V+FH AA + NV+ +LE AR+
Sbjct: 53 KDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ 102
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 27.1 bits (61), Expect = 3.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 33 TDRELLRT--NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 78
++ ++H AA + NVL +LE R+
Sbjct: 53 AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRK 103
Score = 27.1 bits (61), Expect = 3.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 116 TDRELLRT--NVNVIFHGAATVRFDEKIQ---LAVAINVLGVRAMLELARE 161
++ ++H AA + NVL +LE R+
Sbjct: 53 AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRK 103
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 26.6 bits (59), Expect = 3.8
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 5 LKTEVPHFLE--KISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGA--ATVRFDEKIQL 60
+ FL V GD+S+ + E +V+ AT + L
Sbjct: 34 GSDAISRFLNHPHFHFVEGDISIHSEWI-----EYHVKKCDVVLPLVAIATPIEYTRNPL 88
Query: 61 AVA-INVLGVRAMLELARE 78
V ++ ++ +
Sbjct: 89 RVFELDFEENLRIIRYCVK 107
Score = 26.6 bits (59), Expect = 3.8
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 88 LKTEVPHFLE--KISAVAGDVSLPGLGLSETDRELLRTNVNVIFHGA--ATVRFDEKIQL 143
+ FL V GD+S+ + E +V+ AT + L
Sbjct: 34 GSDAISRFLNHPHFHFVEGDISIHSEWI-----EYHVKKCDVVLPLVAIATPIEYTRNPL 88
Query: 144 AVA-INVLGVRAMLELARE 161
V ++ ++ +
Sbjct: 89 RVFELDFEENLRIIRYCVK 107
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 25.9 bits (58), Expect = 6.1
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 33 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 79
T+ ++ V ++I H AA + D ++ LA IN +G R + ++ +
Sbjct: 43 TNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV 97
Score = 25.9 bits (58), Expect = 6.1
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 116 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 162
T+ ++ V ++I H AA + D ++ LA IN +G R + ++ +
Sbjct: 43 TNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV 97
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 25.9 bits (58), Expect = 6.1
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 33 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 79
T+ + NV+ + AA D E+ LA IN +G + + A +
Sbjct: 50 TNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV 104
Score = 25.9 bits (58), Expect = 6.1
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 116 TDRELLRTNV-----NVIFHGAATVRFD---EKIQLAVAINVLGVRAMLELAREI 162
T+ + NV+ + AA D E+ LA IN +G + + A +
Sbjct: 50 TNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV 104
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 26.0 bits (58), Expect = 6.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 35 RELLR---TNVNVIFHGAA--TVRFDEKIQLAVAINVLGVRAMLELARE 78
EL ++V +++H A+ +V K L NV R +L L
Sbjct: 60 LELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTS 108
Score = 26.0 bits (58), Expect = 6.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 118 RELLR---TNVNVIFHGAA--TVRFDEKIQLAVAINVLGVRAMLELARE 161
EL ++V +++H A+ +V K L NV R +L L
Sbjct: 60 LELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTS 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.377
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,572,153
Number of extensions: 158801
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 77
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.5 bits)