RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3446
         (166 letters)



>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 312

 Score = 28.5 bits (63), Expect = 0.33
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 41  NVNVIFHGAATV---RFDEKIQLAVAINVLGVRAMLELARE 78
            V+ I+H A+      +       +  N +G   ML LA+ 
Sbjct: 65  EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 105



 Score = 28.5 bits (63), Expect = 0.33
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 124 NVNVIFHGAATV---RFDEKIQLAVAINVLGVRAMLELARE 161
            V+ I+H A+      +       +  N +G   ML LA+ 
Sbjct: 65  EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 105


>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
           [TaxId: 562]}
          Length = 357

 Score = 24.4 bits (52), Expect = 7.8
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 42  VNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 78
           V  +   +      E  +    ++ +G   +LE  R 
Sbjct: 82  VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 118



 Score = 24.4 bits (52), Expect = 7.8
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 125 VNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELARE 161
           V  +   +      E  +    ++ +G   +LE  R 
Sbjct: 82  VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRF 118


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 24.0 bits (51), Expect = 9.0
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 34  DRELLRTNVNVIFHGAATVRFDEKIQLAVAINVLGVRAMLELAREIRQLKLFLRLKTEVP 93
           DRE L   V      A    F +  +    +  +          ++R+ +  ++ +  +P
Sbjct: 2   DREALLQAVKEARELAKPRNFTQSFEFIATLKEI----------DMRKPENRIKTEVVLP 51

Query: 94  HFLEKISAVAG 104
           H   K + +A 
Sbjct: 52  HGRGKEAKIAV 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.377 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,645
Number of extensions: 26196
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 9
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.1 bits)