Query psy3448
Match_columns 154
No_of_seqs 116 out of 719
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1221|consensus 100.0 7.6E-49 1.7E-53 335.5 12.7 152 3-154 229-381 (467)
2 PLN02503 fatty acyl-CoA reduct 100.0 3.6E-34 7.7E-39 253.3 10.8 141 4-149 372-512 (605)
3 PLN02996 fatty acyl-CoA reduct 100.0 2.4E-31 5.1E-36 231.0 12.7 151 3-154 257-413 (491)
4 PF07993 NAD_binding_4: Male s 98.4 1.8E-07 3.8E-12 74.4 2.9 57 4-63 192-249 (249)
5 PRK07201 short chain dehydroge 96.3 0.014 3E-07 52.2 7.2 94 4-106 172-269 (657)
6 TIGR01746 Thioester-redct thio 95.3 0.049 1.1E-06 44.2 6.1 50 49-102 228-277 (367)
7 PRK10217 dTDP-glucose 4,6-dehy 94.3 0.26 5.7E-06 40.5 7.9 89 4-106 184-272 (355)
8 TIGR01181 dTDP_gluc_dehyt dTDP 94.1 0.22 4.8E-06 39.7 7.0 89 4-106 174-262 (317)
9 PLN02427 UDP-apiose/xylose syn 93.6 0.31 6.7E-06 40.8 7.3 97 4-105 206-307 (386)
10 TIGR01179 galE UDP-glucose-4-e 93.5 0.25 5.5E-06 39.4 6.3 98 4-105 170-276 (328)
11 PRK10084 dTDP-glucose 4,6 dehy 92.5 0.63 1.4E-05 38.2 7.4 87 4-105 191-278 (352)
12 TIGR03443 alpha_am_amid L-amin 92.5 0.32 6.9E-06 47.2 6.4 89 4-103 1173-1262(1389)
13 TIGR01214 rmlD dTDP-4-dehydror 91.8 0.71 1.5E-05 36.6 6.8 53 48-106 178-230 (287)
14 PRK11150 rfaD ADP-L-glycero-D- 90.7 0.83 1.8E-05 36.8 6.2 91 3-105 163-255 (308)
15 TIGR01777 yfcH conserved hypot 90.7 1.2 2.7E-05 35.0 7.1 55 44-105 188-242 (292)
16 PLN02260 probable rhamnose bio 90.5 1.1 2.4E-05 40.6 7.3 88 4-105 183-270 (668)
17 PRK15181 Vi polysaccharide bio 89.5 1.7 3.8E-05 35.9 7.3 95 3-104 188-282 (348)
18 TIGR02197 heptose_epim ADP-L-g 89.3 1.9 4.2E-05 34.4 7.3 54 45-106 208-261 (314)
19 PTZ00374 dihydroxyacetone phos 89.2 0.46 9.9E-06 45.4 3.9 78 30-107 235-317 (1108)
20 PRK11908 NAD-dependent epimera 88.4 3.5 7.7E-05 33.8 8.4 102 4-108 173-275 (347)
21 TIGR02622 CDP_4_6_dhtase CDP-g 86.6 3.9 8.4E-05 33.6 7.6 61 44-104 216-276 (349)
22 PLN02725 GDP-4-keto-6-deoxyman 86.1 4.3 9.3E-05 32.2 7.4 56 43-105 195-250 (306)
23 PF01073 3Beta_HSD: 3-beta hyd 85.1 8 0.00017 31.3 8.6 89 4-103 175-267 (280)
24 PLN00016 RNA-binding protein; 84.7 5 0.00011 33.6 7.5 87 4-105 205-292 (378)
25 PLN02206 UDP-glucuronate decar 83.4 4.1 8.8E-05 35.4 6.5 56 42-105 319-374 (442)
26 PF06956 RtcR: Regulator of RN 80.8 6.9 0.00015 30.2 6.2 67 78-144 69-138 (183)
27 PRK09987 dTDP-4-dehydrorhamnos 77.1 14 0.00031 29.7 7.5 40 56-102 193-232 (299)
28 PLN02166 dTDP-glucose 4,6-dehy 76.9 9.3 0.0002 33.1 6.6 61 37-105 315-375 (436)
29 KOG1430|consensus 75.6 40 0.00086 28.9 9.9 72 29-102 193-266 (361)
30 PLN02695 GDP-D-mannose-3',5'-e 74.4 10 0.00023 31.7 6.2 90 4-105 191-282 (370)
31 PRK08125 bifunctional UDP-gluc 72.2 20 0.00044 32.5 7.8 100 4-106 487-587 (660)
32 PLN02214 cinnamoyl-CoA reducta 71.6 26 0.00057 28.8 7.9 85 4-105 185-269 (342)
33 PLN00198 anthocyanidin reducta 71.2 26 0.00057 28.4 7.7 48 50-105 237-284 (338)
34 PLN02240 UDP-glucose 4-epimera 71.1 11 0.00023 30.8 5.4 58 46-105 233-290 (352)
35 PF04321 RmlD_sub_bind: RmlD s 68.8 3.9 8.5E-05 33.1 2.3 62 44-108 174-235 (286)
36 COG0451 WcaG Nucleoside-diphos 68.4 37 0.00081 26.7 7.9 92 4-107 166-259 (314)
37 PLN02986 cinnamyl-alcohol dehy 67.9 34 0.00074 27.5 7.7 85 4-106 187-271 (322)
38 TIGR01472 gmd GDP-mannose 4,6- 66.6 19 0.00041 29.4 5.9 57 41-105 214-270 (343)
39 PLN02662 cinnamyl-alcohol dehy 62.6 52 0.0011 26.3 7.8 85 4-106 186-270 (322)
40 KOG1502|consensus 61.8 63 0.0014 27.3 8.2 129 4-149 188-321 (327)
41 PLN02989 cinnamyl-alcohol dehy 61.7 41 0.0009 27.0 7.1 84 4-105 188-271 (325)
42 PLN02572 UDP-sulfoquinovose sy 55.3 41 0.00089 29.1 6.3 66 33-103 291-356 (442)
43 PF01370 Epimerase: NAD depend 54.7 37 0.0008 25.5 5.4 72 4-84 164-236 (236)
44 PLN02653 GDP-mannose 4,6-dehyd 53.9 41 0.0009 27.3 5.9 57 41-105 220-276 (340)
45 PRK10675 UDP-galactose-4-epime 53.8 32 0.00069 27.8 5.1 56 46-105 226-281 (338)
46 CHL00194 ycf39 Ycf39; Provisio 50.0 54 0.0012 26.5 6.0 56 45-106 168-223 (317)
47 PRK05865 hypothetical protein; 49.9 43 0.00093 31.9 5.9 52 45-102 149-200 (854)
48 COG4650 RtcR Sigma54-dependent 48.2 67 0.0014 27.5 6.2 109 34-143 16-138 (531)
49 PLN02650 dihydroflavonol-4-red 47.0 1.2E+02 0.0025 24.8 7.5 47 51-105 226-272 (351)
50 PLN02583 cinnamoyl-CoA reducta 38.9 1.4E+02 0.003 23.9 6.7 53 51-110 217-269 (297)
51 PLN02657 3,8-divinyl protochlo 31.8 1.6E+02 0.0035 24.8 6.2 65 37-106 233-298 (390)
52 PF14475 Mso1_Sec1_bdg: Sec1-b 29.3 23 0.00049 20.8 0.4 8 15-22 34-41 (41)
53 TIGR03466 HpnA hopanoid-associ 27.7 3E+02 0.0066 21.6 7.2 50 49-106 200-249 (328)
54 PLN02778 3,5-epimerase/4-reduc 26.2 1.6E+02 0.0036 23.7 5.1 45 53-105 194-238 (298)
55 PF07755 DUF1611: Protein of u 24.9 76 0.0016 26.5 2.9 35 27-72 150-184 (301)
56 PLN02896 cinnamyl-alcohol dehy 24.6 1.4E+02 0.003 24.5 4.4 47 51-105 246-292 (353)
57 PF12495 Vip3A_N: Vegetative i 23.1 27 0.00058 25.7 -0.1 18 18-35 2-19 (177)
58 PF11352 DUF3155: Protein of u 21.7 48 0.001 22.4 0.9 19 77-95 20-38 (90)
59 TIGR03649 ergot_EASG ergot alk 21.6 2.9E+02 0.0063 21.6 5.7 57 44-106 159-215 (285)
60 KOG0747|consensus 21.2 1.1E+02 0.0025 25.7 3.2 78 42-127 212-289 (331)
61 cd02767 MopB_ydeP The MopB_yde 20.8 2.6E+02 0.0056 25.3 5.7 63 56-118 19-108 (574)
No 1
>KOG1221|consensus
Probab=100.00 E-value=7.6e-49 Score=335.46 Aligned_cols=152 Identities=39% Similarity=0.725 Sum_probs=146.8
Q ss_pred cccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccC-CCcCEE
Q psy3448 3 FSGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQ-QQIPIY 81 (154)
Q Consensus 3 ~~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~-~~~~VY 81 (154)
..+|||||+||++||+|||+||++||+|+++|+|+|++|++++|++.++|+||||||||++|+++|+++.+.+ ++++||
T Consensus 229 vIiRPsiI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY 308 (467)
T KOG1221|consen 229 VIIRPSIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIY 308 (467)
T ss_pred EEEcCCceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEE
Confidence 3589999999999999999999999999999999999999999999999999999999999999999988754 368999
Q ss_pred EeecCCCCcccHHHHHHHHHhcCccCCCCccceeeeeeeecCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy3448 82 NYVSSVQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLLHTIPGLILDGVASMFGKTPM 154 (154)
Q Consensus 82 ~~~ss~~np~t~~~~~~~~~~~~~~~P~~~~~w~p~~~~t~~~~~~~~~~~~~h~lPA~i~D~~~~l~G~kp~ 154 (154)
|++||..||+||+++.+.+.++++++|+++.+|+|.+.+++|.+.|.++.+++|.|||+++|+++++.|+||+
T Consensus 309 ~~tss~~Np~t~~~~~e~~~~~~~~~Pl~~~iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~g~k~~ 381 (467)
T KOG1221|consen 309 HLTSSNDNPVTWGDFIELALRYFEKIPLEKMIWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLLGKKPR 381 (467)
T ss_pred EecccccCcccHHHHHHHHHHhcccCCcccceeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHhCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN02503 fatty acyl-CoA reductase 2
Probab=100.00 E-value=3.6e-34 Score=253.28 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=124.7
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+|||||++|++||+|||+||.++..++++.+|+|++|.+++|+++++|+||||+|||++|+++|......+.+.+||||
T Consensus 372 IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ 451 (605)
T PLN02503 372 IIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQI 451 (605)
T ss_pred EEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEe
Confidence 58999999999999999999955555555666899999999999999999999999999999976654433236789999
Q ss_pred ecCCCCcccHHHHHHHHHhcCccCCCCccceeeeeeeecCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLLHTIPGLILDGVASMF 149 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~~P~~~~~w~p~~~~t~~~~~~~~~~~~~h~lPA~i~D~~~~l~ 149 (154)
+|+..||++|+++.+.+.+++.++|+.+.+|+|. ..+++++.+.+..|++|+ +.|+++++.
T Consensus 452 ts~~~nP~t~~~~~~~~~~~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~~h~----~~d~~~~~~ 512 (605)
T PLN02503 452 ASSVVNPLVFQDLARLLYEHYKSSPYMDSKGRPI-HVPPMKLFSSMEDFSSHL----WRDALLRSG 512 (605)
T ss_pred CCCCCCCeEHHHHHHHHHHHHhhCCcccccCcce-eccCceehhhHHHHHHHH----HHHHHHHHh
Confidence 9999999999999999999999999999999997 668999999999999985 689888875
No 3
>PLN02996 fatty acyl-CoA reductase
Probab=99.97 E-value=2.4e-31 Score=230.97 Aligned_cols=151 Identities=25% Similarity=0.272 Sum_probs=138.7
Q ss_pred cccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 3 FSGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 3 ~~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
..+||++|.++.+||+|||+||++|+.+++.++++|.++.+++|++...|+||||.|||++++++|+.... ....+|||
T Consensus 257 ~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~-~~~~~vYN 335 (491)
T PLN02996 257 VIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGG-QGSEIIYH 335 (491)
T ss_pred EEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhhcc-CCCCcEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999875321 12357999
Q ss_pred eecCCCCcccHHHHHHHHHhcCccCCCC----ccceeeeeeeecCHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCC
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHGHHWPTI----RAVWYYSFWPTKSRIMFLFLNFLLHTIPGLILDGVAS--MFGKTPM 154 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~~~~P~~----~~~w~p~~~~t~~~~~~~~~~~~~h~lPA~i~D~~~~--l~G~kp~ 154 (154)
++|+..||+||+++.+.+.+++.++|+. +.+|+|.+.++++.+.|+++.+++|.+|++++|++.+ +.|+||+
T Consensus 336 i~s~~~~~~s~~ei~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 413 (491)
T PLN02996 336 VGSSLKNPVKFSNLHDFAYRYFSKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLKALQLVNIILPKRYGDK 413 (491)
T ss_pred ecCCCCCcccHHHHHHHHHHHhhhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHHHHhHHHHHHHHHHHhhhccChH
Confidence 9999999999999999999999999998 6999999999999999999999999999999999988 6677774
No 4
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=98.40 E-value=1.8e-07 Score=74.39 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=41.9
Q ss_pred ccccceEEcccCCCccceeccCC-chhhhhhhhccCceeeeecCCCCccccchHHHHHHHH
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVY-GPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSV 63 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~-G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~l 63 (154)
.+||++|++ +|..||.++.. ++..+.....+|.+..++++++..+|+||||+|+++|
T Consensus 192 I~Rp~~i~g---~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 192 IYRPGIIVG---DSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp EEEE-EEE----SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred EEecCcccc---cCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 589999999 89999999998 8889999999999999999999999999999999986
No 5
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.014 Score=52.17 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=60.6
Q ss_pred ccccceEEcccCCCccceeccCCchhhh---hhhhcc-CceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcC
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGL---MVGIGT-GVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIP 79 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl---~~~~g~-G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~ 79 (154)
.+||+.|.+..+ .|..+++.+...+ +...+. .....+.++.+...|+|+||.|+++++.++-. +...-.
T Consensus 172 ilRp~~v~G~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~----~~~~g~ 244 (657)
T PRK07201 172 VYRPAVVVGDSR---TGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHK----DGRDGQ 244 (657)
T ss_pred EEcCCeeeecCC---CCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcC----cCCCCC
Confidence 589999988543 4566666554322 222211 11112334556678999999999998877531 111336
Q ss_pred EEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 80 IYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 80 VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
+||++++ .++++.|+.+...+....
T Consensus 245 ~~ni~~~--~~~s~~el~~~i~~~~g~ 269 (657)
T PRK07201 245 TFHLTDP--KPQRVGDIYNAFARAAGA 269 (657)
T ss_pred EEEeCCC--CCCcHHHHHHHHHHHhCC
Confidence 9999876 579999999998886643
No 6
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=95.33 E-value=0.049 Score=44.24 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHh
Q psy3448 49 AVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIK 102 (154)
Q Consensus 49 ~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~ 102 (154)
...|++|||.++++++.++-..... ..-.+||+++. ++++|.++.+.+.+
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~~--~~~~~~~v~~~--~~~s~~e~~~~i~~ 277 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAAS--AGGPVFHVVNP--EPVSLDEFLEWLER 277 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCcc--cCCceEEecCC--CCCCHHHHHHHHHH
Confidence 4678999999999988776322110 01469999875 68999999999887
No 7
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.26 E-value=0.26 Score=40.49 Aligned_cols=89 Identities=8% Similarity=-0.085 Sum_probs=59.8
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+..+.|- + ....++.....|.--.++++.+..-|+|-||=++.+++.+.-. . ....+||+
T Consensus 184 i~r~~~v~Gp~~~~~-~------~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~---~--~~~~~yni 251 (355)
T PRK10217 184 ITNCSNNYGPYHFPE-K------LIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATT---G--KVGETYNI 251 (355)
T ss_pred EEeeeeeeCCCCCcc-c------HHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhc---C--CCCCeEEe
Confidence 578888887654321 1 1122333333443234568889999999999999998877622 1 12369999
Q ss_pred ecCCCCcccHHHHHHHHHhcCcc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
+++ +++++.++.+...+...+
T Consensus 252 ~~~--~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 252 GGH--NERKNLDVVETICELLEE 272 (355)
T ss_pred CCC--CcccHHHHHHHHHHHhcc
Confidence 988 579999999988776543
No 8
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.14 E-value=0.22 Score=39.66 Aligned_cols=89 Identities=11% Similarity=-0.057 Sum_probs=58.7
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+..+.|- ++ ...++.....|..-.+.++.+...|+|.+|=++.++..+.-. . ..-.+||+
T Consensus 174 i~R~~~i~G~~~~~~-~~------~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~---~--~~~~~~~~ 241 (317)
T TIGR01181 174 ITRCSNNYGPYQFPE-KL------IPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEK---G--RVGETYNI 241 (317)
T ss_pred EEEeccccCCCCCcc-cH------HHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcC---C--CCCceEEe
Confidence 578888877543221 11 122333334443334557888889999999999987766521 1 12369999
Q ss_pred ecCCCCcccHHHHHHHHHhcCcc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
+++ .++++.|+.+.+.+.+.+
T Consensus 242 ~~~--~~~s~~~~~~~i~~~~~~ 262 (317)
T TIGR01181 242 GGG--NERTNLEVVETILELLGK 262 (317)
T ss_pred CCC--CceeHHHHHHHHHHHhCC
Confidence 887 479999999999987654
No 9
>PLN02427 UDP-apiose/xylose synthase
Probab=93.63 E-value=0.31 Score=40.84 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=61.5
Q ss_pred ccccceEEcccCCCccceecc----CCchh-hhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCc
Q psy3448 4 SGLHILVVSTYREPVRGWIDN----VYGPV-GLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQI 78 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn----~~G~~-gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~ 78 (154)
.+||+.|.+..+...+| ..+ +.... .++.....|.--.+.++.+...|+|-||=++++++.++-.... ..-
T Consensus 206 ilR~~~vyGp~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~---~~g 281 (386)
T PLN02427 206 IVRPFNWIGPRMDFIPG-IDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPAR---ANG 281 (386)
T ss_pred EecccceeCCCCCcccc-ccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCccc---ccC
Confidence 58999999987665554 111 11111 1122222343334567777788999999999998877632110 123
Q ss_pred CEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 79 PIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 79 ~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
.+||++++. .++++.|+.+.+.+.+.
T Consensus 282 ~~yni~~~~-~~~s~~el~~~i~~~~g 307 (386)
T PLN02427 282 HIFNVGNPN-NEVTVRQLAEMMTEVYA 307 (386)
T ss_pred ceEEeCCCC-CCccHHHHHHHHHHHhc
Confidence 599998752 47999999999887654
No 10
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=93.52 E-value=0.25 Score=39.44 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=60.1
Q ss_pred ccccceEEcccCCCccceecc-CCchhhhhhhhccC---ceeee----e-cCCCCccccchHHHHHHHHHHHhhhhhhcc
Q psy3448 4 SGLHILVVSTYREPVRGWIDN-VYGPVGLMVGIGTG---VLHTY----Q-YDQDAVTEMVPVDMVVNSVIATAWYTAKSN 74 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn-~~G~~gl~~~~g~G---~lr~~----~-~~~~~~~D~VPvD~vvn~li~aa~~~~~~~ 74 (154)
.+||+.|.+...+++.||--. .......+.....| -+..+ + .+.+...|+|.+|=+++++..++......
T Consensus 170 ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~- 248 (328)
T TIGR01179 170 ILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNG- 248 (328)
T ss_pred EEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcC-
Confidence 578988888776665555311 11111111122221 11211 1 24456679999999999988877543321
Q ss_pred CCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 75 QQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 75 ~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
....+||++++ .++|++|+.+.+.+.+.
T Consensus 249 -~~~~~~n~~~~--~~~s~~ei~~~~~~~~g 276 (328)
T TIGR01179 249 -GESHVYNLGYG--QGFSVLEVIEAFKKVSG 276 (328)
T ss_pred -CCcceEEcCCC--CcccHHHHHHHHHHHhC
Confidence 13369999876 47999999999988764
No 11
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.50 E-value=0.63 Score=38.19 Aligned_cols=87 Identities=8% Similarity=-0.092 Sum_probs=56.8
Q ss_pred ccccceEEcccCCCccceeccCCch-hhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGP-VGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~-~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
.+||+.|.+..+.+ .+. ..++.....|.--.++++.+...|+|-||=++.+++.+.-. . ....+||
T Consensus 191 ilr~~~v~Gp~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~---~--~~~~~yn 257 (352)
T PRK10084 191 VTNCSNNYGPYHFP--------EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTE---G--KAGETYN 257 (352)
T ss_pred EEeccceeCCCcCc--------cchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhc---C--CCCceEE
Confidence 46777776644221 121 12233333344335678888999999999999998766521 1 1346999
Q ss_pred eecCCCCcccHHHHHHHHHhcCc
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
++++ ++.++.++.+...+...
T Consensus 258 i~~~--~~~s~~~~~~~i~~~~~ 278 (352)
T PRK10084 258 IGGH--NEKKNLDVVLTICDLLD 278 (352)
T ss_pred eCCC--CcCcHHHHHHHHHHHhc
Confidence 9877 47899999888776654
No 12
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=92.46 E-value=0.32 Score=47.24 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=53.5
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCcee-eeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLH-TYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr-~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
.+||+.|.+..+.+. | | ....+...-++... ..+.+.....|++|||.|+++++.++-.... .....+||
T Consensus 1173 i~Rpg~v~G~~~~g~--~--~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~--~~~~~i~~ 1243 (1389)
T TIGR03443 1173 IVRPGYVTGDSKTGA--T--N---TDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPK--ESELAVAH 1243 (1389)
T ss_pred EECCCccccCCCcCC--C--C---chhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcc--cCCCCEEE
Confidence 579999888644331 2 1 12222222222211 1222445568999999999999887642211 11346999
Q ss_pred eecCCCCcccHHHHHHHHHhc
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKH 103 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~ 103 (154)
+++. .+++|.++.+...+.
T Consensus 1244 ~~~~--~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1244 VTGH--PRIRFNDFLGTLKTY 1262 (1389)
T ss_pred eCCC--CCCcHHHHHHHHHHh
Confidence 8765 468999999988765
No 13
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.85 E-value=0.71 Score=36.56 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 48 DAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 48 ~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
+...+.+-+|-++++++.++-.. . ..-.+||++++ +++++.|+.+...+...+
T Consensus 178 ~~~~~~v~v~Dva~a~~~~~~~~-~---~~~~~~ni~~~--~~~s~~e~~~~i~~~~~~ 230 (287)
T TIGR01214 178 DQIGSPTYAKDLARVIAALLQRL-A---RARGVYHLANS--GQCSWYEFAQAIFEEAGA 230 (287)
T ss_pred CCCcCCcCHHHHHHHHHHHHhhc-c---CCCCeEEEECC--CCcCHHHHHHHHHHHhCc
Confidence 35567888999999988876321 1 13469999876 579999999999886554
No 14
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=90.73 E-value=0.83 Score=36.76 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=58.3
Q ss_pred cccccceEEcccCCCccceeccCCchhhhh-hhhccCc-eeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCE
Q psy3448 3 FSGLHILVVSTYREPVRGWIDNVYGPVGLM-VGIGTGV-LHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPI 80 (154)
Q Consensus 3 ~~~RPSIV~~a~~EP~pGWiDn~~G~~gl~-~~~g~G~-lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~V 80 (154)
..+||+.|.+..+.+ .|- +.+....+ -....|- ...+.++.+..-|++-||=++++++.++-. . ...+
T Consensus 163 ~~lR~~~vyG~~~~~-~~~---~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~----~--~~~~ 232 (308)
T PRK11150 163 CGFRYFNVYGPREGH-KGS---MASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWEN----G--VSGI 232 (308)
T ss_pred EEEeeeeecCCCCCC-CCc---cchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhc----C--CCCe
Confidence 357998888865433 121 11111111 1233443 233446777888999999999998876521 1 1259
Q ss_pred EEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 81 YNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 81 Y~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
||++++ .++++.|+.+...+...
T Consensus 233 yni~~~--~~~s~~el~~~i~~~~~ 255 (308)
T PRK11150 233 FNCGTG--RAESFQAVADAVLAYHK 255 (308)
T ss_pred EEcCCC--CceeHHHHHHHHHHHhC
Confidence 999887 46999999999988654
No 15
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=90.72 E-value=1.2 Score=35.02 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=43.2
Q ss_pred ecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 44 QYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 44 ~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
.++.+...|.|-||=++.++..++- . ++...+||++++ .++|+.|+.+.+.+...
T Consensus 188 ~g~~~~~~~~i~v~Dva~~i~~~l~-~----~~~~g~~~~~~~--~~~s~~di~~~i~~~~g 242 (292)
T TIGR01777 188 LGSGRQWFSWIHIEDLVQLILFALE-N----ASISGPVNATAP--EPVRNKEFAKALARALH 242 (292)
T ss_pred cCCCCcccccEeHHHHHHHHHHHhc-C----cccCCceEecCC--CccCHHHHHHHHHHHhC
Confidence 4777888999999999999887762 1 112358999876 57999999999987664
No 16
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.45 E-value=1.1 Score=40.57 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=58.7
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+..+.| +++ ...++.....|---.++++.+...|+|-||=+++++..+.-. . ..-.+||+
T Consensus 183 ilR~~~VyGp~~~~-----~~~--i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~-~----~~~~vyni 250 (668)
T PLN02260 183 TTRGNNVYGPNQFP-----EKL--IPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK-G----EVGHVYNI 250 (668)
T ss_pred EECcccccCcCCCc-----ccH--HHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhc-C----CCCCEEEE
Confidence 57888888765432 110 112222333443334678888889999999999998776521 1 12369999
Q ss_pred ecCCCCcccHHHHHHHHHhcCc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~ 105 (154)
+++ +++++.|+.+.+.+.+.
T Consensus 251 ~~~--~~~s~~el~~~i~~~~g 270 (668)
T PLN02260 251 GTK--KERRVIDVAKDICKLFG 270 (668)
T ss_pred CCC--CeeEHHHHHHHHHHHhC
Confidence 887 57899999999987654
No 17
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.54 E-value=1.7 Score=35.87 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=59.7
Q ss_pred cccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 3 FSGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 3 ~~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
..+||+.|.+..+.|-.+. +. -...++.....|---.+.++.+..-|+|=||=++++++.++-.... .....+||
T Consensus 188 ~~lR~~~vyGp~~~~~~~~-~~--~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~--~~~~~~yn 262 (348)
T PRK15181 188 IGLRYFNVFGRRQNPNGAY-SA--VIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL--ASKNKVYN 262 (348)
T ss_pred EEEEecceeCcCCCCCCcc-cc--CHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc--cCCCCEEE
Confidence 3679999888664432111 00 0122222233343335668888888999999999998766522111 01346999
Q ss_pred eecCCCCcccHHHHHHHHHhcC
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHG 104 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~ 104 (154)
++++ .++|+.|+.+.+.+..
T Consensus 263 i~~g--~~~s~~e~~~~i~~~~ 282 (348)
T PRK15181 263 VAVG--DRTSLNELYYLIRDGL 282 (348)
T ss_pred ecCC--CcEeHHHHHHHHHHHh
Confidence 9877 5799999999997654
No 18
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=89.32 E-value=1.9 Score=34.37 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=42.7
Q ss_pred cCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 45 YDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 45 ~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
++.+...|++-||=++.+++.++-. . ...+||++++ .|+|+.|+.+.+.+...+
T Consensus 208 ~~g~~~~~~i~v~D~a~~i~~~~~~--~----~~~~yni~~~--~~~s~~e~~~~i~~~~g~ 261 (314)
T TIGR02197 208 KDGEQLRDFVYVKDVVDVNLWLLEN--G----VSGIFNLGTG--RARSFNDLADAVFKALGK 261 (314)
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhc--c----cCceEEcCCC--CCccHHHHHHHHHHHhCC
Confidence 4667778999999999998887743 1 2359999887 479999999999886543
No 19
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=89.18 E-value=0.46 Score=45.41 Aligned_cols=78 Identities=9% Similarity=0.159 Sum_probs=58.4
Q ss_pred hhhhhhccCceeeeecCCCCccccchHHHHHHH-HHHHhhhhhhccC----CCcCEEEeecCCCCcccHHHHHHHHHhcC
Q psy3448 30 GLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNS-VIATAWYTAKSNQ----QQIPIYNYVSSVQKPVTWNEFLQHNIKHG 104 (154)
Q Consensus 30 gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~-li~aa~~~~~~~~----~~~~VY~~~ss~~np~t~~~~~~~~~~~~ 104 (154)
-+.+|.++|.++.++..-...+.++|+|...|+ +++..|.-...-. ..-..--|++..+|.+-||.+.|+...|+
T Consensus 235 ~~~~~~a~g~~~~~p~~~~~p~~~~p~d~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vwgm~~~ylm~yy 314 (1108)
T PTZ00374 235 CVCLGVALGTVKHLPVGFRDPATVTPLDVALNTALLAVLLLCHGGLAECVECAAEMQLCGAPGDNSLVWGMVAEYLMDYY 314 (1108)
T ss_pred HHHHHHhhhhhhcccccCCCCceeccHHHHHHHHHHHHHHHhcCChHHHhcchhhheeccCCccceeeHHHHHHHHHHHH
Confidence 356899999999999999999999999999997 6666664332100 01123345666789999999999998887
Q ss_pred ccC
Q psy3448 105 HHW 107 (154)
Q Consensus 105 ~~~ 107 (154)
.+.
T Consensus 315 ~r~ 317 (1108)
T PTZ00374 315 GRF 317 (1108)
T ss_pred hhh
Confidence 654
No 20
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=88.41 E-value=3.5 Score=33.80 Aligned_cols=102 Identities=8% Similarity=-0.006 Sum_probs=60.7
Q ss_pred ccccceEEcccCCCccceeccCCc-hhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYG-PVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G-~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
.+||+-|.+..++|+-.=-+.... ...++..+..|.--.+.++.+..-|+|=||=++++++.++-..... ..-.+||
T Consensus 173 ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~--~~g~~yn 250 (347)
T PRK11908 173 LFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGV--ASGKIYN 250 (347)
T ss_pred EEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCcccc--CCCCeEE
Confidence 478888777655442110000011 1122323333432245567778889999999999988776321100 1236999
Q ss_pred eecCCCCcccHHHHHHHHHhcCccCC
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHGHHWP 108 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~~~~P 108 (154)
+++. .+++|+.|+.+.+.+...+.|
T Consensus 251 i~~~-~~~~s~~e~~~~i~~~~~~~~ 275 (347)
T PRK11908 251 IGNP-KNNHSVRELANKMLELAAEYP 275 (347)
T ss_pred eCCC-CCCcCHHHHHHHHHHHhcCcc
Confidence 9764 357999999999987665444
No 21
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=86.57 E-value=3.9 Score=33.64 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=42.9
Q ss_pred ecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcC
Q psy3448 44 QYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHG 104 (154)
Q Consensus 44 ~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~ 104 (154)
..+.+..-|+|-||=++++++.++-+........-.+||++|+...+.+..++.+...+..
T Consensus 216 ~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~ 276 (349)
T TIGR02622 216 IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFW 276 (349)
T ss_pred ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHh
Confidence 4577888999999888888877664322111111259999887557899999998777643
No 22
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=86.08 E-value=4.3 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.021 Sum_probs=43.0
Q ss_pred eecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 43 YQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 43 ~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
.+++.+..-|+|=||=++++++.++-.. .....||++++ .++++.|+.+...+.+.
T Consensus 195 ~~~~g~~~~~~i~v~Dv~~~~~~~~~~~-----~~~~~~ni~~~--~~~s~~e~~~~i~~~~~ 250 (306)
T PLN02725 195 VWGSGSPLREFLHVDDLADAVVFLMRRY-----SGAEHVNVGSG--DEVTIKELAELVKEVVG 250 (306)
T ss_pred EcCCCCeeeccccHHHHHHHHHHHHhcc-----ccCcceEeCCC--CcccHHHHHHHHHHHhC
Confidence 3778888889999999999987776321 12357898776 57999999999987654
No 23
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=85.06 E-value=8 Score=31.34 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=58.5
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhc---cCCCcCE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKS---NQQQIPI 80 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~---~~~~~~V 80 (154)
.+||+.|.+--+.-+- .-+.-....|......++.+...|++=|+=|+.+.+.|+-..... ..-.-..
T Consensus 175 ~lRP~~IyGp~d~~~~---------~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~ 245 (280)
T PF01073_consen 175 ALRPAGIYGPGDQRLV---------PRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQA 245 (280)
T ss_pred EEeccEEeCccccccc---------chhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcE
Confidence 5788887764321110 112233445656677888899999999999999988887554433 1123469
Q ss_pred EEeecCCCCccc-HHHHHHHHHhc
Q psy3448 81 YNYVSSVQKPVT-WNEFLQHNIKH 103 (154)
Q Consensus 81 Y~~~ss~~np~t-~~~~~~~~~~~ 103 (154)
|+++-. .|+. +.++.+...+.
T Consensus 246 y~itd~--~p~~~~~~f~~~~~~~ 267 (280)
T PF01073_consen 246 YFITDG--EPVPSFWDFMRPLWEA 267 (280)
T ss_pred EEEECC--CccCcHHHHHHHHHHH
Confidence 999876 5888 77877655543
No 24
>PLN00016 RNA-binding protein; Provisional
Probab=84.71 E-value=5 Score=33.59 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=55.4
Q ss_pred ccccceEEcccCCC-ccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREP-VRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP-~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
.+||+.|.+..... +..| ++-....|.--.++++.+...+++=+|=++++++.+.-... ..-.+||
T Consensus 205 ilRp~~vyG~~~~~~~~~~---------~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~----~~~~~yn 271 (378)
T PLN00016 205 SFRPQYIYGPGNNKDCEEW---------FFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPK----AAGQIFN 271 (378)
T ss_pred EEeceeEECCCCCCchHHH---------HHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCcc----ccCCEEE
Confidence 57888887654321 1111 11122233323456777788899989999998887763211 1236999
Q ss_pred eecCCCCcccHHHHHHHHHhcCc
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
++++ .++|+.|+.+.+.+...
T Consensus 272 i~~~--~~~s~~el~~~i~~~~g 292 (378)
T PLN00016 272 IVSD--RAVTFDGMAKACAKAAG 292 (378)
T ss_pred ecCC--CccCHHHHHHHHHHHhC
Confidence 9876 57999999999887544
No 25
>PLN02206 UDP-glucuronate decarboxylase
Probab=83.38 E-value=4.1 Score=35.35 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=43.7
Q ss_pred eeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 42 TYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 42 ~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
.++++.+..-|++=||=++.+++.++- +. ...+||++++ +++|+.|+.+...+...
T Consensus 319 ~i~g~G~~~rdfi~V~Dva~ai~~a~e----~~--~~g~yNIgs~--~~~sl~Elae~i~~~~g 374 (442)
T PLN02206 319 TVYGDGKQTRSFQFVSDLVEGLMRLME----GE--HVGPFNLGNP--GEFTMLELAKVVQETID 374 (442)
T ss_pred EEeCCCCEEEeEEeHHHHHHHHHHHHh----cC--CCceEEEcCC--CceeHHHHHHHHHHHhC
Confidence 566888888899999999999887752 11 2348999887 57999999999888653
No 26
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=80.81 E-value=6.9 Score=30.25 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred cCEEEeecCCCCcccHHHHHHHHHhcCccCCCCccceeeeeeeecCHHHHHHHHHHHH---HHHHHHHHH
Q psy3448 78 IPIYNYVSSVQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLLH---TIPGLILDG 144 (154)
Q Consensus 78 ~~VY~~~ss~~np~t~~~~~~~~~~~~~~~P~~~~~w~p~~~~t~~~~~~~~~~~~~h---~lPA~i~D~ 144 (154)
..|--..-.-.+|..++|+......+.+.+||+---=-..+.+|+.-..-++|.|++- ++||.++..
T Consensus 69 TeV~~~~v~l~dPWDfeeVY~~l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQIc~FLL~Esr~lPa~LlQt 138 (183)
T PF06956_consen 69 TEVRLHEVELADPWDFEEVYAALHDFARGYPFDPENEDYLVHITTGTHVAQICWFLLTESRYLPARLLQT 138 (183)
T ss_pred CEEEEEEeccCCCccHHHHHHHHHHHHhhCCCCCCCCceEEEecCCcHHHHHHHHHHHHhccccHHHhcc
Confidence 3455445566799999999999999999999964333455777887778889888764 788887643
No 27
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=77.14 E-value=14 Score=29.73 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHh
Q psy3448 56 VDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIK 102 (154)
Q Consensus 56 vD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~ 102 (154)
+|.++.++..+. . + .+...+||++++ .++||.|+.+...+
T Consensus 193 ~d~~~~~~~~~~-~---~-~~~~giyni~~~--~~~s~~e~~~~i~~ 232 (299)
T PRK09987 193 ADCTAHAIRVAL-N---K-PEVAGLYHLVAS--GTTTWHDYAALVFE 232 (299)
T ss_pred HHHHHHHHHHhh-c---c-CCCCCeEEeeCC--CCccHHHHHHHHHH
Confidence 666665555443 1 1 112359999887 57999999988755
No 28
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=76.93 E-value=9.3 Score=33.08 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=45.7
Q ss_pred cCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 37 TGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 37 ~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
.|---.++++.+..-|+|=||=++++++.++ + + +...+||++++ +++|+.|+.+.+.+...
T Consensus 315 ~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~-~---~--~~~giyNIgs~--~~~Si~ela~~I~~~~g 375 (436)
T PLN02166 315 RKQPMTVYGDGKQTRSFQYVSDLVDGLVALM-E---G--EHVGPFNLGNP--GEFTMLELAEVVKETID 375 (436)
T ss_pred cCCCcEEeCCCCeEEeeEEHHHHHHHHHHHH-h---c--CCCceEEeCCC--CcEeHHHHHHHHHHHhC
Confidence 3433356788888889999999999987765 2 1 12359999887 57999999999988764
No 29
>KOG1430|consensus
Probab=75.65 E-value=40 Score=28.85 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=51.3
Q ss_pred hhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhh-hccCCCcCEEEeecCCCCccc-HHHHHHHHHh
Q psy3448 29 VGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTA-KSNQQQIPIYNYVSSVQKPVT-WNEFLQHNIK 102 (154)
Q Consensus 29 ~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~-~~~~~~~~VY~~~ss~~np~t-~~~~~~~~~~ 102 (154)
..+.-..-+|......++.+..-|.+.++=|+-+-+.|+.... ....-...+|+++.. +|+. |..+......
T Consensus 193 ~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~--~p~~~~~~~~~l~~~ 266 (361)
T KOG1430|consen 193 PKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDD--TPVRFFDFLSPLVKA 266 (361)
T ss_pred HHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCC--CcchhhHHHHHHHHh
Confidence 4566777889989999999999999999998888777766544 222235679999877 4554 4444433333
No 30
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=74.43 E-value=10 Score=31.70 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=56.4
Q ss_pred ccccceEEcccCCCccceeccCC-chhhhhhhhcc-CceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVY-GPVGLMVGIGT-GVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIY 81 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~-G~~gl~~~~g~-G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY 81 (154)
.+||+.|.+..+ .|-++-. -+..++....+ +.--.++++.+..-|+|=||=++.+++.+.-. . ...+|
T Consensus 191 ilR~~~vyGp~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~---~---~~~~~ 260 (370)
T PLN02695 191 IGRFHNIYGPFG----TWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKS---D---FREPV 260 (370)
T ss_pred EEEECCccCCCC----CccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhc---c---CCCce
Confidence 568888777432 2321111 12233332222 22335678888889999999999987765421 1 22589
Q ss_pred EeecCCCCcccHHHHHHHHHhcCc
Q psy3448 82 NYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 82 ~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
|++++ +++++.|+.+.+.+...
T Consensus 261 nv~~~--~~~s~~el~~~i~~~~g 282 (370)
T PLN02695 261 NIGSD--EMVSMNEMAEIALSFEN 282 (370)
T ss_pred EecCC--CceeHHHHHHHHHHHhC
Confidence 99876 57999999999977543
No 31
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=72.15 E-value=20 Score=32.54 Aligned_cols=100 Identities=5% Similarity=-0.093 Sum_probs=60.0
Q ss_pred ccccceEEcccCCCccceeccCCchh-hhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPV-GLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~-gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
.+||+.|.+..+.+....-....+.. .++.....|---.+.++.+..-|+|=||=++++++.++-.... ...-.+||
T Consensus 487 ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~--~~~g~iyn 564 (660)
T PRK08125 487 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDN--RCDGQIIN 564 (660)
T ss_pred EEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhcccc--ccCCeEEE
Confidence 57899888765433221100011111 2222233343334567888888999999999998877632110 01235999
Q ss_pred eecCCCCcccHHHHHHHHHhcCcc
Q psy3448 83 YVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 83 ~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
++++. +++++.|+.+.+.+...+
T Consensus 565 i~~~~-~~~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 565 IGNPD-NEASIRELAEMLLASFEK 587 (660)
T ss_pred cCCCC-CceeHHHHHHHHHHHhcc
Confidence 98763 368999999999887653
No 32
>PLN02214 cinnamoyl-CoA reductase
Probab=71.61 E-value=26 Score=28.81 Aligned_cols=85 Identities=15% Similarity=0.003 Sum_probs=52.5
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+....|. ..+....++....|-... ++ +..-|+|=||=|+++++.++-+ .. .-..||+
T Consensus 185 ~lRp~~vyGp~~~~~------~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~V~Dva~a~~~al~~-~~----~~g~yn~ 250 (342)
T PLN02214 185 VLNPVLVLGPPLQPT------INASLYHVLKYLTGSAKT-YA--NLTQAYVDVRDVALAHVLVYEA-PS----ASGRYLL 250 (342)
T ss_pred EEeCCceECCCCCCC------CCchHHHHHHHHcCCccc-CC--CCCcCeeEHHHHHHHHHHHHhC-cc----cCCcEEE
Confidence 689999988654432 111111222223333222 22 3456999999999998887632 11 1247998
Q ss_pred ecCCCCcccHHHHHHHHHhcCc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~ 105 (154)
++. +.++.|+.+.+.+...
T Consensus 251 ~~~---~~~~~el~~~i~~~~~ 269 (342)
T PLN02214 251 AES---ARHRGEVVEILAKLFP 269 (342)
T ss_pred ecC---CCCHHHHHHHHHHHCC
Confidence 763 5799999999998764
No 33
>PLN00198 anthocyanidin reductase; Provisional
Probab=71.23 E-value=26 Score=28.44 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=33.7
Q ss_pred ccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 50 VTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 50 ~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
..|+|-||=++++++.++-.. . ....|+ +++ .++++.++.+...+...
T Consensus 237 ~~~~i~V~D~a~a~~~~~~~~-~----~~~~~~-~~~--~~~s~~el~~~i~~~~~ 284 (338)
T PLN00198 237 SISITHVEDVCRAHIFLAEKE-S----ASGRYI-CCA--ANTSVPELAKFLIKRYP 284 (338)
T ss_pred CcceeEHHHHHHHHHHHhhCc-C----cCCcEE-Eec--CCCCHHHHHHHHHHHCC
Confidence 359999999999988776321 1 123575 444 36899999999987553
No 34
>PLN02240 UDP-glucose 4-epimerase
Probab=71.07 E-value=11 Score=30.77 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=41.8
Q ss_pred CCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 46 DQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 46 ~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
+.+..-|+|=||=++++++.++.....+....-.+||++++ .++|+.|+.+...+...
T Consensus 233 ~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~--~~~s~~el~~~i~~~~g 290 (352)
T PLN02240 233 DGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTG--KGTSVLEMVAAFEKASG 290 (352)
T ss_pred CCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCC--CcEeHHHHHHHHHHHhC
Confidence 45667788989999999887775432211112369999887 57999999999987654
No 35
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=68.76 E-value=3.9 Score=33.11 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=38.9
Q ss_pred ecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCccCC
Q psy3448 44 QYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHHWP 108 (154)
Q Consensus 44 ~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~~P 108 (154)
....+....-+.++-++.+++..+-+..... ....|||++++ .++++.|+.+...+.+...+
T Consensus 174 ~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~~-~~~Giyh~~~~--~~~S~~e~~~~i~~~~~~~~ 235 (286)
T PF04321_consen 174 KLFDDQYRSPTYVDDLARVILELIEKNLSGA-SPWGIYHLSGP--ERVSRYEFAEAIAKILGLDP 235 (286)
T ss_dssp EEESSCEE--EEHHHHHHHHHHHHHHHHH-G-GG-EEEE---B--S-EEHHHHHHHHHHHHTHCT
T ss_pred EeeCCceeCCEEHHHHHHHHHHHHHhccccc-ccceeEEEecC--cccCHHHHHHHHHHHhCCCC
Confidence 3344666788999999999888885544311 13469999887 56999999998887655433
No 36
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=68.41 E-value=37 Score=26.71 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=59.7
Q ss_pred ccccceEEcccCCCc-cceeccCCchhhhhhhhccCc-eeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEE
Q psy3448 4 SGLHILVVSTYREPV-RGWIDNVYGPVGLMVGIGTGV-LHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIY 81 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~-pGWiDn~~G~~gl~~~~g~G~-lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY 81 (154)
.+||+.|.+.-+.+. ++| -...++.-..+|. ...+.++.+..-|++=||=++.+++.++-... .. +|
T Consensus 166 ilR~~~vyGp~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-----~~-~~ 234 (314)
T COG0451 166 ILRPFNVYGPGDKPDLSSG-----VVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD-----GG-VF 234 (314)
T ss_pred EEeeeeeeCCCCCCCCCcC-----cHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCC-----Cc-EE
Confidence 578887777665554 221 1222343344455 46677777777777778888888777762111 22 99
Q ss_pred EeecCCCCcccHHHHHHHHHhcCccC
Q psy3448 82 NYVSSVQKPVTWNEFLQHNIKHGHHW 107 (154)
Q Consensus 82 ~~~ss~~np~t~~~~~~~~~~~~~~~ 107 (154)
|+++.. .+.+.+|+.+...+.....
T Consensus 235 ni~~~~-~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 235 NIGSGT-AEITVRELAEAVAEAVGSK 259 (314)
T ss_pred EeCCCC-CcEEHHHHHHHHHHHhCCC
Confidence 998875 4789999999998765543
No 37
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=67.94 E-value=34 Score=27.51 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=52.8
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
++||+.|.+....|..+ . ...++..+..|.- .++ +...|+|=||=++++++.++-.. ....+||+
T Consensus 187 ~lrp~~v~Gp~~~~~~~----~--~~~~~~~~~~g~~--~~~--~~~~~~v~v~Dva~a~~~al~~~-----~~~~~yni 251 (322)
T PLN02986 187 VLNPGFICGPLLQPTLN----F--SVELIVDFINGKN--LFN--NRFYRFVDVRDVALAHIKALETP-----SANGRYII 251 (322)
T ss_pred EEcccceeCCCCCCCCC----c--cHHHHHHHHcCCC--CCC--CcCcceeEHHHHHHHHHHHhcCc-----ccCCcEEE
Confidence 58999998876655311 1 1223333333321 122 33458888999999988776321 11237998
Q ss_pred ecCCCCcccHHHHHHHHHhcCcc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
++ .++|+.|+.+.+.+.+.+
T Consensus 252 -~~--~~~s~~e~~~~i~~~~~~ 271 (322)
T PLN02986 252 -DG--PIMSVNDIIDILRELFPD 271 (322)
T ss_pred -ec--CCCCHHHHHHHHHHHCCC
Confidence 44 369999999999887653
No 38
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=66.56 E-value=19 Score=29.43 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=44.9
Q ss_pred eeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 41 HTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 41 r~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
..++++.+..-|+|=||=++++++.++-+ . ...+||++|+ .++|+.|+.+.+.+...
T Consensus 214 ~~~~g~g~~~rd~i~V~D~a~a~~~~~~~-~-----~~~~yni~~g--~~~s~~e~~~~i~~~~g 270 (343)
T TIGR01472 214 KLYLGNLDAKRDWGHAKDYVEAMWLMLQQ-D-----KPDDYVIATG--ETHSVREFVEVSFEYIG 270 (343)
T ss_pred ceeeCCCccccCceeHHHHHHHHHHHHhc-C-----CCccEEecCC--CceeHHHHHHHHHHHcC
Confidence 35668889999999999999998877621 1 1258999887 57999999999887654
No 39
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.64 E-value=52 Score=26.26 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=51.2
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+..++|..+ ...+.+.....|.- ..++...|+|=||=|+++++.+.-.. +....||+
T Consensus 186 ~lRp~~v~Gp~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~~~~ 250 (322)
T PLN02662 186 TINPAMVIGPLLQPTLN------TSAEAILNLINGAQ----TFPNASYRWVDVRDVANAHIQAFEIP-----SASGRYCL 250 (322)
T ss_pred EEeCCcccCCCCCCCCC------chHHHHHHHhcCCc----cCCCCCcCeEEHHHHHHHHHHHhcCc-----CcCCcEEE
Confidence 57888887765544311 11122222222321 12345679999999999988776321 11236887
Q ss_pred ecCCCCcccHHHHHHHHHhcCcc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
+ + .++++.|+.+.+.+....
T Consensus 251 ~-g--~~~s~~e~~~~i~~~~~~ 270 (322)
T PLN02662 251 V-E--RVVHYSEVVKILHELYPT 270 (322)
T ss_pred e-C--CCCCHHHHHHHHHHHCCC
Confidence 5 3 469999999999886543
No 40
>KOG1502|consensus
Probab=61.82 E-value=63 Score=27.28 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=84.9
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
++-|+.|.+-.-.| +++...-.++..-+|....... ....+|=||=|+++-|.+--+ ++.-.-|.|
T Consensus 188 ~inP~lV~GP~l~~------~l~~s~~~~l~~i~G~~~~~~n---~~~~~VdVrDVA~AHv~a~E~-----~~a~GRyic 253 (327)
T KOG1502|consen 188 TINPGLVFGPGLQP------SLNSSLNALLKLIKGLAETYPN---FWLAFVDVRDVALAHVLALEK-----PSAKGRYIC 253 (327)
T ss_pred EecCCceECCCccc------ccchhHHHHHHHHhcccccCCC---CceeeEeHHHHHHHHHHHHcC-----cccCceEEE
Confidence 35577777755555 5677677777777786554433 333388899999998877522 123368999
Q ss_pred ecCCCCcccHHHHHHHHHhcCccCCCCccc---eeeee--eeecCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGHHWPTIRAV---WYYSF--WPTKSRIMFLFLNFLLHTIPGLILDGVASMF 149 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~~~P~~~~~---w~p~~--~~t~~~~~~~~~~~~~h~lPA~i~D~~~~l~ 149 (154)
++... +++|+.+...+.+..++....- +.+.. .-..+..+.++.++.++-+.-.+.|.+-.+.
T Consensus 254 ~~~~~---~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~ 321 (327)
T KOG1502|consen 254 VGEVV---SIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLR 321 (327)
T ss_pred ecCcc---cHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhcccceecChHHHHHHHHHHHH
Confidence 88753 4999999999988877643221 11111 1245666777776667777788888876554
No 41
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=61.68 E-value=41 Score=27.02 Aligned_cols=84 Identities=14% Similarity=-0.049 Sum_probs=51.2
Q ss_pred ccccceEEcccCCCccceeccCCchhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEe
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNY 83 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~ 83 (154)
.+||+.|.+..+.|..+ ....++.....|-. ... ...-|++-||=++++++.+.-... ...+||+
T Consensus 188 ilR~~~vyGp~~~~~~~------~~~~~i~~~~~~~~--~~~--~~~r~~i~v~Dva~a~~~~l~~~~-----~~~~~ni 252 (325)
T PLN02989 188 VLNPGLVTGPILQPTLN------FSVAVIVELMKGKN--PFN--TTHHRFVDVRDVALAHVKALETPS-----ANGRYII 252 (325)
T ss_pred EEcCCceeCCCCCCCCC------chHHHHHHHHcCCC--CCC--CcCcCeeEHHHHHHHHHHHhcCcc-----cCceEEE
Confidence 58999998876655321 11223332222211 111 123478889999999887753211 1248998
Q ss_pred ecCCCCcccHHHHHHHHHhcCc
Q psy3448 84 VSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 84 ~ss~~np~t~~~~~~~~~~~~~ 105 (154)
++. ++|+.|+.+...+.+.
T Consensus 253 -~~~--~~s~~ei~~~i~~~~~ 271 (325)
T PLN02989 253 -DGP--VVTIKDIENVLREFFP 271 (325)
T ss_pred -ecC--CCCHHHHHHHHHHHCC
Confidence 443 6999999999998764
No 42
>PLN02572 UDP-sulfoquinovose synthase
Probab=55.28 E-value=41 Score=29.07 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred hhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhc
Q psy3448 33 VGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKH 103 (154)
Q Consensus 33 ~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~ 103 (154)
.....|.--.++++.+..-|+|=||=|+++++.++-.... .++..+||+++ .++++.|+.+.+.+.
T Consensus 291 ~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~--~g~~~i~Nigs---~~~si~el~~~i~~~ 356 (442)
T PLN02572 291 VQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAK--PGEFRVFNQFT---EQFSVNELAKLVTKA 356 (442)
T ss_pred HHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhh--cCceeEEEeCC---CceeHHHHHHHHHHH
Confidence 3334454334668888888999999999999887632111 11235899865 259999999999886
No 43
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=54.68 E-value=37 Score=25.49 Aligned_cols=72 Identities=17% Similarity=0.011 Sum_probs=47.7
Q ss_pred ccccceEEcccCCCccceeccCCchh-hhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEE
Q psy3448 4 SGLHILVVSTYREPVRGWIDNVYGPV-GLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYN 82 (154)
Q Consensus 4 ~~RPSIV~~a~~EP~pGWiDn~~G~~-gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~ 82 (154)
++||+.|.+.. +-.++..+.. .++...-+|.--.++++.+...|++-||=++.+++.++-+.. -.-.+||
T Consensus 164 ~~R~~~vyG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~yN 234 (236)
T PF01370_consen 164 ILRPPNVYGPG-----NPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPK----AAGGIYN 234 (236)
T ss_dssp EEEESEEESTT-----SSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSC----TTTEEEE
T ss_pred ccccccccccc-----ccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCC----CCCCEEE
Confidence 57899888865 1111222222 344445566656778899999999999999999888873322 1345898
Q ss_pred ee
Q psy3448 83 YV 84 (154)
Q Consensus 83 ~~ 84 (154)
++
T Consensus 235 ig 236 (236)
T PF01370_consen 235 IG 236 (236)
T ss_dssp ES
T ss_pred eC
Confidence 74
No 44
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=53.91 E-value=41 Score=27.30 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=44.0
Q ss_pred eeeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 41 HTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 41 r~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
..+.++.+..-|++=||=++++++.++-. . ...+||++|+ +++++.|+.+.+.+...
T Consensus 220 ~~~~g~g~~~rd~i~v~D~a~a~~~~~~~---~---~~~~yni~~g--~~~s~~e~~~~i~~~~g 276 (340)
T PLN02653 220 KLFLGNLDASRDWGFAGDYVEAMWLMLQQ---E---KPDDYVVATE--ESHTVEEFLEEAFGYVG 276 (340)
T ss_pred ceEeCCCcceecceeHHHHHHHHHHHHhc---C---CCCcEEecCC--CceeHHHHHHHHHHHcC
Confidence 34558888889999999999998877632 1 1258999887 57999999998877654
No 45
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=53.78 E-value=32 Score=27.76 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=40.5
Q ss_pred CCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 46 DQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 46 ~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
+.+...|+|=||=++++++.++-..... ..-.+||++++ .++|+.|+.+.+.+...
T Consensus 226 ~g~~~~~~v~v~D~a~~~~~~~~~~~~~--~~~~~~ni~~~--~~~s~~e~~~~i~~~~g 281 (338)
T PRK10675 226 DGTGVRDYIHVMDLADGHVAAMEKLANK--PGVHIYNLGAG--VGSSVLDVVNAFSKACG 281 (338)
T ss_pred CCcEEEeeEEHHHHHHHHHHHHHhhhcc--CCCceEEecCC--CceeHHHHHHHHHHHhC
Confidence 4456679999999999888776321111 12359999877 57999999999987654
No 46
>CHL00194 ycf39 Ycf39; Provisional
Probab=50.03 E-value=54 Score=26.49 Aligned_cols=56 Identities=5% Similarity=0.037 Sum_probs=40.2
Q ss_pred cCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 45 YDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 45 ~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
...+...+.|-+|=+++++..+.-.- . ..-.+||+++. .++|+.|+.+...+...+
T Consensus 168 ~~~~~~~~~i~v~Dva~~~~~~l~~~-~---~~~~~~ni~g~--~~~s~~el~~~~~~~~g~ 223 (317)
T CHL00194 168 TNESTPISYIDTQDAAKFCLKSLSLP-E---TKNKTFPLVGP--KSWNSSEIISLCEQLSGQ 223 (317)
T ss_pred cCCCCccCccCHHHHHHHHHHHhcCc-c---ccCcEEEecCC--CccCHHHHHHHHHHHhCC
Confidence 34556678888888888887665221 1 12369999887 579999999999886644
No 47
>PRK05865 hypothetical protein; Provisional
Probab=49.87 E-value=43 Score=31.92 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=37.7
Q ss_pred cCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHh
Q psy3448 45 YDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIK 102 (154)
Q Consensus 45 ~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~ 102 (154)
++.+...|+|=||=++++++.+.-... ..-.+||++++ +++|+.|+.+...+
T Consensus 149 G~~~~~~dfIhVdDVA~Ai~~aL~~~~----~~ggvyNIgsg--~~~Si~EIae~l~~ 200 (854)
T PRK05865 149 GYADRVVQVVHSDDAQRLLVRALLDTV----IDSGPVNLAAP--GELTFRRIAAALGR 200 (854)
T ss_pred CCCCceEeeeeHHHHHHHHHHHHhCCC----cCCCeEEEECC--CcccHHHHHHHHhh
Confidence 445556689999999999877752111 12358999887 56899999998775
No 48
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=48.19 E-value=67 Score=27.46 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=68.1
Q ss_pred hhccCceeeeecCCCCccccchHHHHHHH--HHHHhhhhhh-----c----cCCCcCEEEeecCCCCcccHHHHHHHHHh
Q psy3448 34 GIGTGVLHTYQYDQDAVTEMVPVDMVVNS--VIATAWYTAK-----S----NQQQIPIYNYVSSVQKPVTWNEFLQHNIK 102 (154)
Q Consensus 34 ~~g~G~lr~~~~~~~~~~D~VPvD~vvn~--li~aa~~~~~-----~----~~~~~~VY~~~ss~~np~t~~~~~~~~~~ 102 (154)
..|+|-.|.--..|+..+..- -|+|++- +|--|-..+- + -+.+..|-..--...||..+.|++....+
T Consensus 16 yag~g~qrw~kwrps~~lcqq-e~lvi~rlellhdarsr~lfe~l~~dia~vspetev~~vei~lrnpwdfeevy~~lhd 94 (531)
T COG4650 16 YAGRGSQRWSKWRPSLCLCQQ-ESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELRNPWDFEEVYACLHD 94 (531)
T ss_pred hcccchhhhhhcCCceeeccC-cchhHHHHHHHhhhhhhhHHHHHHHhhhhcCCcceeEEEEEEecCcccHHHHHHHHHH
Confidence 456777666555555444322 3666665 2322211110 0 01234466555667899999999999999
Q ss_pred cCccCCCCccceeeeeeeecCHHHHHHHHHHH---HHHHHHHHH
Q psy3448 103 HGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLL---HTIPGLILD 143 (154)
Q Consensus 103 ~~~~~P~~~~~w~p~~~~t~~~~~~~~~~~~~---h~lPA~i~D 143 (154)
+.+.++|+---=-.-..+|+....-++|.|++ .+|||-++.
T Consensus 95 far~y~f~~e~edylihittgthvaqicwfllaearylparl~q 138 (531)
T COG4650 95 FARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQ 138 (531)
T ss_pred HhhcCCCCCcccceEEEEecCccHHHHHHHHHHHhhhccHhHhc
Confidence 99999985433344467777777888888876 478887654
No 49
>PLN02650 dihydroflavonol-4-reductase
Probab=46.96 E-value=1.2e+02 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 51 TEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 51 ~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
-|+|=||=++++++.++-. . ....+|+ +++ .++++.|+.+.+.+...
T Consensus 226 r~~v~V~Dva~a~~~~l~~-~----~~~~~~i-~~~--~~~s~~el~~~i~~~~~ 272 (351)
T PLN02650 226 GQFVHLDDLCNAHIFLFEH-P----AAEGRYI-CSS--HDATIHDLAKMLREKYP 272 (351)
T ss_pred cceeeHHHHHHHHHHHhcC-c----CcCceEE-ecC--CCcCHHHHHHHHHHhCc
Confidence 5999999999998877632 1 1123685 454 45899999999987653
No 50
>PLN02583 cinnamoyl-CoA reductase
Probab=38.94 E-value=1.4e+02 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCccCCCC
Q psy3448 51 TEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHHWPTI 110 (154)
Q Consensus 51 ~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~~P~~ 110 (154)
.++|=||=|+.+.+.+.-.. . .-..|.|++.. ...+.++.+...+.+-..|..
T Consensus 217 ~~~v~V~Dva~a~~~al~~~-~----~~~r~~~~~~~--~~~~~~~~~~~~~~~p~~~~~ 269 (297)
T PLN02583 217 LVTVDVNFLVDAHIRAFEDV-S----SYGRYLCFNHI--VNTEEDAVKLAQMLSPLIPSP 269 (297)
T ss_pred cceEEHHHHHHHHHHHhcCc-c----cCCcEEEecCC--CccHHHHHHHHHHhCCCCCCC
Confidence 45788999999988887321 1 12368887653 346788999999887776654
No 51
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=31.75 E-value=1.6e+02 Score=24.84 Aligned_cols=65 Identities=8% Similarity=-0.125 Sum_probs=38.5
Q ss_pred cCceeeeecCCCCc-cccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 37 TGVLHTYQYDQDAV-TEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 37 ~G~lr~~~~~~~~~-~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
.|..-.+.+|.+.. .+.|=+|=++.+++.++-+.. ..-.+||+++. ..++|+.|+.+.+.+...+
T Consensus 233 ~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~----~~~~~~~Iggp-~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 233 DGGPYVMFGDGKLCACKPISEADLASFIADCVLDES----KINKVLPIGGP-GKALTPLEQGEMLFRILGK 298 (390)
T ss_pred cCCceEEecCCcccccCceeHHHHHHHHHHHHhCcc----ccCCEEEcCCC-CcccCHHHHHHHHHHHhCC
Confidence 34434456776643 344545445555555542211 12369999753 2478999999999887654
No 52
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=29.26 E-value=23 Score=20.78 Aligned_cols=8 Identities=38% Similarity=1.240 Sum_probs=6.6
Q ss_pred CCCcccee
Q psy3448 15 REPVRGWI 22 (154)
Q Consensus 15 ~EP~pGWi 22 (154)
..|+|+|+
T Consensus 34 ~~~~P~WL 41 (41)
T PF14475_consen 34 GRPFPGWL 41 (41)
T ss_pred CCCCCCcC
Confidence 57999995
No 53
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=27.69 E-value=3e+02 Score=21.60 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=35.4
Q ss_pred CccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 49 AVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 49 ~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
...|+|-||=++++++.+.-. . ..-.+||++ + .++++.|+.+...+...+
T Consensus 200 ~~~~~i~v~D~a~a~~~~~~~-~----~~~~~~~~~-~--~~~s~~e~~~~i~~~~g~ 249 (328)
T TIGR03466 200 TGLNLVHVDDVAEGHLLALER-G----RIGERYILG-G--ENLTLKQILDKLAEITGR 249 (328)
T ss_pred CCcceEEHHHHHHHHHHHHhC-C----CCCceEEec-C--CCcCHHHHHHHHHHHhCC
Confidence 345889999999998777632 1 123478874 3 469999999998876543
No 54
>PLN02778 3,5-epimerase/4-reductase
Probab=26.23 E-value=1.6e+02 Score=23.65 Aligned_cols=45 Identities=29% Similarity=0.307 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 53 MVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 53 ~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
++=+|=++++++.+. .+. ...+||++|+ .++++.|+.+...+...
T Consensus 194 ~~yv~D~v~al~~~l----~~~--~~g~yNigs~--~~iS~~el~~~i~~~~~ 238 (298)
T PLN02778 194 MTILDELLPISIEMA----KRN--LTGIYNFTNP--GVVSHNEILEMYRDYID 238 (298)
T ss_pred CEEHHHHHHHHHHHH----hCC--CCCeEEeCCC--CcccHHHHHHHHHHHhC
Confidence 333444556666554 111 1259999777 48999999998877665
No 55
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.95 E-value=76 Score=26.48 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=23.8
Q ss_pred chhhhhhhhccCceeeeecCCCCccccchHHHHHHHHHHHhhhhhh
Q psy3448 27 GPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAK 72 (154)
Q Consensus 27 G~~gl~~~~g~G~lr~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~ 72 (154)
|.+|++. .+.| ..+|-||+|+++-++=.+.++..+
T Consensus 150 GQTGimi-a~~G----------v~iDav~~DFvaGavE~~v~~~~~ 184 (301)
T PF07755_consen 150 GQTGIMI-AGYG----------VPIDAVPSDFVAGAVEALVPEAAE 184 (301)
T ss_dssp SHHHHHC-HSEC------------GGGSBGGGHHHHHHHHHHHHCC
T ss_pred CCceEEE-ecCC----------eeccchhhhhHHHHHHHHHHhhCc
Confidence 5566665 5554 467899999999887666666653
No 56
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=24.58 E-value=1.4e+02 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCc
Q psy3448 51 TEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGH 105 (154)
Q Consensus 51 ~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~ 105 (154)
-|+|=||=++++++.+.-. .. .-.+|++ ++ .+.++.|+.+...+...
T Consensus 246 ~dfi~v~Dva~a~~~~l~~-~~----~~~~~~~-~~--~~~s~~el~~~i~~~~~ 292 (353)
T PLN02896 246 IALVHIEDICDAHIFLMEQ-TK----AEGRYIC-CV--DSYDMSELINHLSKEYP 292 (353)
T ss_pred eeEEeHHHHHHHHHHHHhC-CC----cCccEEe-cC--CCCCHHHHHHHHHHhCC
Confidence 4889999999998887632 11 1136865 44 47999999999988664
No 57
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=23.07 E-value=27 Score=25.68 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.1
Q ss_pred ccceeccCCchhhhhhhh
Q psy3448 18 VRGWIDNVYGPVGLMVGI 35 (154)
Q Consensus 18 ~pGWiDn~~G~~gl~~~~ 35 (154)
+||++|-++|..|+..|+
T Consensus 2 lp~fidyfngiygfatgi 19 (177)
T PF12495_consen 2 LPSFIDYFNGIYGFATGI 19 (177)
T ss_pred CchHHHHhcchhHHHhhH
Confidence 699999999998876654
No 58
>PF11352 DUF3155: Protein of unknown function (DUF3155); InterPro: IPR021498 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.66 E-value=48 Score=22.36 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.5
Q ss_pred CcCEEEeecCCCCcccHHH
Q psy3448 77 QIPIYNYVSSVQKPVTWNE 95 (154)
Q Consensus 77 ~~~VY~~~ss~~np~t~~~ 95 (154)
.+|.||+.|+.++|+|-..
T Consensus 20 ~vP~~~ie~ge~KpVTAAR 38 (90)
T PF11352_consen 20 HVPQFNIESGEDKPVTAAR 38 (90)
T ss_pred hCCcceeccCCCCccHHHH
Confidence 5789999999999998743
No 59
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=21.56 E-value=2.9e+02 Score=21.55 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=39.5
Q ss_pred ecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCcc
Q psy3448 44 QYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHH 106 (154)
Q Consensus 44 ~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~ 106 (154)
...++...+.|-++=++.++..+.-... ..-.+|+++.+ .++|+.|+.+...+...+
T Consensus 159 ~~~g~~~~~~v~~~Dva~~~~~~l~~~~----~~~~~~~l~g~--~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 159 SATGDGKIPFVSADDIARVAYRALTDKV----APNTDYVVLGP--ELLTYDDVAEILSRVLGR 215 (285)
T ss_pred ecCCCCccCcccHHHHHHHHHHHhcCCC----cCCCeEEeeCC--ccCCHHHHHHHHHHHhCC
Confidence 3456777888888888887666542211 12358998775 579999999998876543
No 60
>KOG0747|consensus
Probab=21.17 E-value=1.1e+02 Score=25.68 Aligned_cols=78 Identities=10% Similarity=-0.090 Sum_probs=50.3
Q ss_pred eeecCCCCccccchHHHHHHHHHHHhhhhhhccCCCcCEEEeecCCCCcccHHHHHHHHHhcCccCCCCccceeeeeeee
Q psy3448 42 TYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPT 121 (154)
Q Consensus 42 ~~~~~~~~~~D~VPvD~vvn~li~aa~~~~~~~~~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~~P~~~~~w~p~~~~t 121 (154)
.++++....-..+=|+=|++++-+++-+ ++ .-.|||+.+. -+++.-++.+.+.+++.+.-. +.--.|...+.
T Consensus 212 ~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~----~geIYNIgtd--~e~~~~~l~k~i~eli~~~~~-~~~~~p~~~~v 283 (331)
T KOG0747|consen 212 PIHGDGLQTRSYLYVEDVSEAFKAVLEK-GE----LGEIYNIGTD--DEMRVIDLAKDICELFEKRLP-NIDTEPFIFFV 283 (331)
T ss_pred ceecCcccceeeEeHHHHHHHHHHHHhc-CC----ccceeeccCc--chhhHHHHHHHHHHHHHHhcc-CCCCCCcceec
Confidence 4555665666666678888888887754 32 2469999887 578998998888887665322 33335555555
Q ss_pred cCHHHH
Q psy3448 122 KSRIMF 127 (154)
Q Consensus 122 ~~~~~~ 127 (154)
.++...
T Consensus 284 ~dRp~n 289 (331)
T KOG0747|consen 284 EDRPYN 289 (331)
T ss_pred CCCCcc
Confidence 544433
No 61
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.76 E-value=2.6e+02 Score=25.27 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhhhccC---------------------------CCcCEEEeecCCCCcccHHHHHHHHHhcCccCC
Q psy3448 56 VDMVVNSVIATAWYTAKSNQ---------------------------QQIPIYNYVSSVQKPVTWNEFLQHNIKHGHHWP 108 (154)
Q Consensus 56 vD~vvn~li~aa~~~~~~~~---------------------------~~~~VY~~~ss~~np~t~~~~~~~~~~~~~~~P 108 (154)
.++|-|..=+.+|+...++- +.+.++.-.++...|++|+|..+.+.+.+++.-
T Consensus 19 ~~~c~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~RL~~Pm~R~~G~g~~~~ISWDEAl~~IA~kL~~~~ 98 (574)
T cd02767 19 FEFCENGAKALAWETTPKRVTPEFFALHSVSELRTWSDYELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRALD 98 (574)
T ss_pred chhhhhHHHHHHHHhccCccCCcccccCCHHHhcCCChhhccCCCccCCCEEecCCCCCEEEecHHHHHHHHHHHHhhhC
Confidence 48999999999998766530 123355444666789999999999988877753
Q ss_pred CCccceeeee
Q psy3448 109 TIRAVWYYSF 118 (154)
Q Consensus 109 ~~~~~w~p~~ 118 (154)
.++..++-+.
T Consensus 99 ~~~~~~y~sg 108 (574)
T cd02767 99 PDRAAFYTSG 108 (574)
T ss_pred CCcEEEEecC
Confidence 3555554433
Done!