RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3448
         (154 letters)



>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
           rossmann fold, short chain dehydrogenase/REDU family,
           reductase; 2.30A {Mycobacterium tuberculosis}
          Length = 478

 Score = 61.1 bits (148), Expect = 7e-12
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 38  GVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFL 97
               +    Q A  + +PV  V  ++       A S+      Y+ ++     +  +E++
Sbjct: 313 YEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYV 372

Query: 98  QHNIKHGHHWPTIRAVWYYSFW 119
              I+ G+    IR +  ++ W
Sbjct: 373 DWLIEAGYP---IRRIDDFAEW 391


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 36/107 (33%)

Query: 15  REPVRGWIDNVYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSN 74
           R+       N + PV           H+      A ++++  D+V N+V   ++    + 
Sbjct: 412 RKLK---FSNRFLPV-------ASPFHS-HLLVPA-SDLINKDLVKNNV---SF---NAK 453

Query: 75  QQQIPIYN---------YVSSV---------QKPVTWNEFLQHNIKH 103
             QIP+Y+            S+         + PV W    Q    H
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500



 Score = 31.6 bits (71), Expect = 0.10
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 22/99 (22%)

Query: 7   HILVVSTY-REPVRGWID--NVYGPVGLMVGIGTGVLHTYQYDQDAVTEMV----PVDMV 59
            +L +S   +E V+ +++  N + P G  V I    L       +    +V    P  + 
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LV------NGAKNLVVSGPPQSLY 387

Query: 60  -VNSVIATAWYTAKSNQQQIPIYNYVSSVQKPVTWNEFL 97
            +N  +  A   +  +Q +IP      S +K    N FL
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIP-----FSERKLKFSNRFL 421


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 8.7
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 34/129 (26%)

Query: 25  VYGPVGLMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQ----IPI 80
           + G    ++G G   +         V   +        +    W   K+          +
Sbjct: 155 IDG----VLGSGKTWVALDVCLSYKVQCKMD-----FKIF---WLNLKNCNSPETVLEML 202

Query: 81  YNYVSSVQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFL--FLNFLLHTIP 138
              +  +    T       NIK   H                 R++    + N LL    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----------LRRLLKSKPYENCLL---- 248

Query: 139 GLILDGVAS 147
             +L  V +
Sbjct: 249 --VLLNVQN 255


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,468,294
Number of extensions: 135582
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)