RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3448
         (154 letters)



>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 231

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 31  LMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKP 90
           L V  G G  H        V ++V  D+  + +     +   +  QQ+      +     
Sbjct: 20  LDVATGGG--HVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77

Query: 91  VTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLLHTIPGL 140
                 +       HH+P   +    ++   K     L ++         
Sbjct: 78  TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF 127


>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 91

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 5/24 (20%), Positives = 7/24 (29%)

Query: 92  TWNEFLQHNIKHGHHWPTIRAVWY 115
           T  E  +H       W T     +
Sbjct: 6   TREEVGRHRSPEERVWVTHGTDVF 29


>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 134

 Score = 24.2 bits (52), Expect = 5.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 2  NFSGLHILVV 11
          NF+GL +LV+
Sbjct: 4  NFTGLKVLVM 13


>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 234

 Score = 24.5 bits (52), Expect = 5.8
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 31  LMVGIGTGVLHTYQYDQDAVTEMVPVDMVVNSVIATAWYTAKSNQQQIPIYNYVSSVQKP 90
           L +G G G  HT       V E + VD     V   + +  +   + +      +     
Sbjct: 21  LDIGAGAG--HTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78

Query: 91  VTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMFLFLNFLLHTIPGL 140
              +  +       HH+  +R          K    FL ++      P L
Sbjct: 79  PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 128


>d1tdqb_ d.169.1.1 (B:) Aggrecan core protein {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 126

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 5/41 (12%), Positives = 11/41 (26%)

Query: 87  VQKPVTWNEFLQHNIKHGHHWPTIRAVWYYSFWPTKSRIMF 127
                TW +  +   +   H  +I       F    ++   
Sbjct: 18  FPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQ 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,357
Number of extensions: 26590
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 12
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)