RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy345
(462 letters)
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 251 bits (643), Expect = 3e-81
Identities = 90/220 (40%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 120 KSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLP 179
++V++ +A G V + + RL+ + H +
Sbjct: 21 RAVSVRLAGEG--ATVA---------ACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQ 69
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFL 239
DVS + ++ FSRPP+V+V+CAGIT+D + L ++E D+ +V VNLKGTFL
Sbjct: 70 ADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFL 129
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
V+QA + LV GSIINI SIVG++GN+GQ+NYAA+KAGV T++ A E+ GIR
Sbjct: 130 VTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIR 189
Query: 300 CNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
CN +LPGFI TPMT VP KV + T +IP+ G PE V
Sbjct: 190 CNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDV 229
Score = 247 bits (632), Expect = 1e-79
Identities = 82/164 (50%), Positives = 109/164 (66%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
H + DVS + ++ FSRPP+V+V+CAGIT+D + L ++E D+ +V VN
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVN 123
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
LKGTFLV+QA + LV GSIINI SIVG++GN+GQ+NYAA+KAGV T++ A E+
Sbjct: 124 LKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAAREL 183
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
GIRCN +LPGFI TPM VP KV + T +IP+ G PE
Sbjct: 184 GRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPE 227
Score = 204 bits (521), Expect = 5e-63
Identities = 68/124 (54%), Positives = 87/124 (70%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + LV GSIINI SIVG++GN+GQ+NYAA+KAGV T++ A E+ GIRCN
Sbjct: 133 AAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNS 192
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+LPGFI TPMT VP KV + T +IP G PE++ +V+ FLAS+ S YITGT ++VT
Sbjct: 193 VLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVT 252
Query: 458 GGLA 461
GGL
Sbjct: 253 GGLF 256
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 222 bits (568), Expect = 3e-70
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ D+S+ ++ + I+ ++LVN A I + + ++++ DVNL
Sbjct: 55 RAIAADISDPGSVKALFAEIQALTGGI-DILVNNASIVPFVAWDDVDLDHWRKIIDVNLT 113
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GTF+V++A ++ +G +I+I S G + Y A K GV FT+++A E+
Sbjct: 114 GTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGK 173
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETF-TRLIPLKRFGKPEAV 339
+ I N + PG IE+ + P F L +K G+PE +
Sbjct: 174 YNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHI 218
Score = 219 bits (560), Expect = 5e-69
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ D+S+ ++ + I+ ++LVN A I + + ++++ DVNL
Sbjct: 55 RAIAADISDPGSVKALFAEIQALTGGI-DILVNNASIVPFVAWDDVDLDHWRKIIDVNLT 113
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF+V++A ++ +G +I+I S G + Y A K GV FT+++A E+
Sbjct: 114 GTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGK 173
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETF-TRLIPLKRFGKPE 170
+ I N + PG IE+ + + P F L +K G+PE
Sbjct: 174 YNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPE 216
Score = 185 bits (473), Expect = 4e-56
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++ +G +I+I S G + Y A K GV FT+++A E+ + I N
Sbjct: 121 AGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANA 180
Query: 398 ILPGFIETPMTTCVPDKVKETF-TRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+ PG IE+ P F L K G+PE I +V+ FLASD + +ITG + V
Sbjct: 181 VTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNV 240
Query: 457 TGGLA 461
G+
Sbjct: 241 DAGMV 245
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 219 bits (561), Expect = 3e-69
Identities = 82/164 (50%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ DV N + + T + F R ++LVN AGITRD LK++EKD+ V + NLK
Sbjct: 58 VVAKGDVKNPEDVENMVKTAMDAFGRI-DILVNNAGITRDTLMLKMSEKDWDDVLNTNLK 116
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+L ++AV K +++ KS G IINI SI G +GN GQ+NYAA+KAG+ FTKS+A E A
Sbjct: 117 SAYLCTKAVSKIMLKQKS-GKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAA 175
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
GI CN + PG I+T MT +PDKVKE + IPLKRFG PE V
Sbjct: 176 KGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEV 219
Score = 215 bits (549), Expect = 2e-67
Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 2/162 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ DV N + + + F R ++LVN AGITRD LK++EKD+ V + NLK
Sbjct: 58 VVAKGDVKNPEDVENMVKTAMDAFGRI-DILVNNAGITRDTLMLKMSEKDWDDVLNTNLK 116
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+L ++AV K +++ KS G IINI SI G +GN GQ+NYAA+KAG+ FTKS+A E A
Sbjct: 117 SAYLCTKAVSKIMLKQKS-GKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAA 175
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
GI CN + PG I+T M +PDKVKE + IPLKRFG PE
Sbjct: 176 KGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPE 217
Score = 184 bits (471), Expect = 7e-56
Identities = 71/124 (57%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV K +++ KS G IINI SI G +GN GQ+NYAA+KAG+ FTKS+A E A GI CN
Sbjct: 124 AVSKIMLKQKS-GKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNA 182
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+ PG I+T MT +PDKVKE + IP KRFG PEE+ V+ FLASD S+YITG +I +
Sbjct: 183 VAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINID 242
Query: 458 GGLA 461
GGL
Sbjct: 243 GGLV 246
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 220 bits (564), Expect = 3e-69
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
DVS IS ++ I + ++LVN AGITRDN FL++ +++ V NL
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNV-DILVNNAGITRDNLFLRMKNDEWEDVLRTNLN 154
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F ++Q + K ++ + G IINI SIVG GN+GQ+NY+++KAGV FTKS+A E+A+
Sbjct: 155 SLFYITQPISKRMINNRY-GRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELAS 213
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N I PGFI + MT + +++K+ IP R G PE V
Sbjct: 214 RNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEV 257
Score = 216 bits (552), Expect = 2e-67
Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
DVS IS ++ I + ++LVN AGITRDN FL++ +++ V NL
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNV-DILVNNAGITRDNLFLRMKNDEWEDVLRTNLN 154
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F ++Q + K ++ + G IINI SIVG GN+GQ+NY+++KAGV FTKS+A E+A+
Sbjct: 155 SLFYITQPISKRMINNRY-GRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELAS 213
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N I PGFI + M + +++K+ IP R G PE
Sbjct: 214 RNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPE 255
Score = 187 bits (476), Expect = 4e-56
Identities = 55/113 (48%), Positives = 76/113 (67%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI SIVG GN+GQ+NY+++KAGV FTKS+A E+A+ I N I PGFI + MT
Sbjct: 172 YGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT 231
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +++K+ IP R G PEE+ + CFL+SD+S YI G + + GGL+
Sbjct: 232 DKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGLS 284
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 218 bits (558), Expect = 8e-69
Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ DVS + + M T + + +V+VN AGITRD +++ + + +V D+NL
Sbjct: 54 ITFGGDVSKEADVEAMMKTAIDAWGTI-DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLT 112
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G FL +QA K +++ + G IINI S+VG +GN+GQ+NYAA KAGV F+K+ A E A+
Sbjct: 113 GVFLCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGAS 171
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I NV+ PGFI + MT + + +++ IPL R G+PE V
Sbjct: 172 RNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENV 215
Score = 214 bits (547), Expect = 4e-67
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ DVS + + M + + +V+VN AGITRD +++ + + +V D+NL
Sbjct: 54 ITFGGDVSKEADVEAMMKTAIDAWGTI-DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLT 112
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G FL +QA K +++ + G IINI S+VG +GN+GQ+NYAA KAGV F+K+ A E A+
Sbjct: 113 GVFLCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGAS 171
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I NV+ PGFI + M + + +++ IPL R G+PE
Sbjct: 172 RNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPE 213
Score = 178 bits (455), Expect = 1e-53
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI S+VG +GN+GQ+NYAA KAGV F+K+ A E A+ I NV+ PGFI + MT
Sbjct: 130 KGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMT 189
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLA-SDRSSYITGTLIKVTGGLA 461
+ + +++ IP R G+PE + ++ FLA S +SYITG + GG+A
Sbjct: 190 AKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 218 bits (557), Expect = 1e-68
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 3/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ MDV++ +++ + R + +V+ AGITRDN+ K+ +D++ V VNL G+
Sbjct: 54 VVMDVADPASVERGFAEALAHLGRL-DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGS 112
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
FLV++A + + E GSI+ S V +GN+GQ+NYAA+ AGV T+++A+E+ +G
Sbjct: 113 FLVAKAASEAMREKNP-GSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRWG 170
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
IR N + PGFIET MT VP+KV+E PL R GKP V
Sbjct: 171 IRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEV 212
Score = 214 bits (548), Expect = 3e-67
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ MDV++ +++ + R + +V+ AGITRDN+ K+ +D++ V VNL G+
Sbjct: 54 VVMDVADPASVERGFAEALAHLGRL-DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGS 112
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
FLV++A + + E GSI+ S V +GN+GQ+NYAA+ AGV T+++A+E+ +G
Sbjct: 113 FLVAKAASEAMREKNP-GSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRWG 170
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
IR N + PGFIET M VP+KV+E PL R GKP
Sbjct: 171 IRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPL 210
Score = 182 bits (464), Expect = 7e-55
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + + E GSI+ S V +GN+GQ+NYAA+ AGV T+++A+E+ +GIR N
Sbjct: 118 AASEAMREKNP-GSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNT 175
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+ PGFIET MT VP+KV+E P R GKP E+ FL SD SS+ITG ++ V
Sbjct: 176 LAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVD 235
Query: 458 GGLA 461
GG
Sbjct: 236 GGRT 239
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 218 bits (557), Expect = 1e-68
Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 168 KPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ 227
+ GS L ++ + + E + LVN AGITRD +++ ++D++
Sbjct: 47 RRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGL-DTLVNNAGITRDTLLVRMKDEDWE 105
Query: 228 QVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 287
V + NL F ++ K +++ + G I+NI S+VG +GN GQ+NY A+KAG+ FT+
Sbjct: 106 AVLEANLSAVFRTTREAVKLMMKARF-GRIVNITSVVGILGNPGQANYVASKAGLIGFTR 164
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+VA E A GI N + PGFIET MT +P +VKE + + IP RFG+PE V
Sbjct: 165 AVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPEEV 216
Score = 213 bits (545), Expect = 8e-67
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
GS L ++ + + E + LVN AGITRD +++ ++D++ V
Sbjct: 50 GSPLVAVLGANLLEAEAATALVHQAAEVLGGL-DTLVNNAGITRDTLLVRMKDEDWEAVL 108
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
+ NL F ++ K +++ + G I+NI S+VG +GN GQ+NY A+KAG+ FT++VA
Sbjct: 109 EANLSAVFRTTREAVKLMMKARF-GRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVA 167
Query: 124 MEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
E A GI N + PGFIET M +P +VKE + + IP RFG+PE
Sbjct: 168 KEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPE 214
Score = 183 bits (468), Expect = 2e-55
Identities = 58/113 (51%), Positives = 78/113 (69%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+NI S+VG +GN GQ+NY A+KAG+ FT++VA E A GI N + PGFIET MT
Sbjct: 131 FGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMT 190
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+P +VKE + + IP RFG+PEE+ E + FL S+++ YITG + V GGL
Sbjct: 191 ERLPQEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGLT 243
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 218 bits (557), Expect = 1e-68
Identities = 61/162 (37%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ DV+N ++ + + F + ++LVN AG+T+DN +++ E+++ V + NLKG
Sbjct: 59 VRADVANAEDVTNMVKQTVDVFGQV-DILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGV 117
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
FL ++AV + ++ + G I+NI S+VG GN GQ+NY A KAGV TK+ A E+A+
Sbjct: 118 FLCTKAVSRFMMRQRH-GRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRN 176
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N I PGFI T MT + + +K +LIP +FG+ + +
Sbjct: 177 ITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDI 218
Score = 213 bits (545), Expect = 7e-67
Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ DV+N ++ + + F + ++LVN AG+T+DN +++ E+++ V + NLKG
Sbjct: 59 VRADVANAEDVTNMVKQTVDVFGQV-DILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGV 117
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
FL ++AV + ++ + G I+NI S+VG GN GQ+NY A KAGV TK+ A E+A+
Sbjct: 118 FLCTKAVSRFMMRQRH-GRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRN 176
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N I PGFI T M + + +K +LIP +FG+ +
Sbjct: 177 ITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQ 216
Score = 183 bits (467), Expect = 3e-55
Identities = 52/113 (46%), Positives = 70/113 (61%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+NI S+VG GN GQ+NY A KAGV TK+ A E+A+ I N I PGFI T MT
Sbjct: 133 HGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMT 192
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ + +K +LIP +FG+ ++I + F ASD+S YITG + V GG+
Sbjct: 193 DVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMV 245
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 218 bits (557), Expect = 2e-68
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+V + + A +K + +VLVN AGITRD F K+T +D+Q V D NL
Sbjct: 68 SEGNVGDWDSTKQAFDKVKAEVGEI-DVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSL 126
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F V++ V +VE G IINI S+ GQ G GQ+NY+ KAG+ FT S+A E+AT G
Sbjct: 127 FNVTKQVIDGMVERGW-GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKG 185
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ N + PG+I T M ++ V E IP++R G P+ +
Sbjct: 186 VTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEI 227
Score = 214 bits (548), Expect = 4e-67
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+V + + A +K + +VLVN AGITRD F K+T +D+Q V D NL
Sbjct: 68 SEGNVGDWDSTKQAFDKVKAEVGEI-DVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSL 126
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F V++ V +VE G IINI S+ GQ G GQ+NY+ KAG+ FT S+A E+AT G
Sbjct: 127 FNVTKQVIDGMVERGW-GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKG 185
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ N + PG+I T M+ ++ V E IP++R G P+
Sbjct: 186 VTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPD 225
Score = 181 bits (463), Expect = 1e-54
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
V +VE G IINI S+ GQ G GQ+NY+ KAG+ FT S+A E+AT G+ N
Sbjct: 132 QVIDGMVERGW-GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNT 190
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+ PG+I T M + V E IP +R G P+EIG ++ +LAS+ S + TG +
Sbjct: 191 VSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLN 250
Query: 458 GGLA 461
GGL
Sbjct: 251 GGLH 254
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 217 bits (556), Expect = 2e-68
Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ +V++ + + + +F +VLVN AGITRDN +++ E+++ V D NLKG
Sbjct: 59 IQANVADADEVKAMIKEVVSQFGSL-DVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F Q +++ +S G+IIN+ S+VG +GN GQ+NY ATKAGV TKS A E+A+ G
Sbjct: 118 FNCIQKATPQMLRQRS-GAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRG 176
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N + PGFI + MT ++ D++KE IPL RFG+ +
Sbjct: 177 ITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDI 218
Score = 213 bits (544), Expect = 1e-66
Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ +V++ + + + +F +VLVN AGITRDN +++ E+++ V D NLKG
Sbjct: 59 IQANVADADEVKAMIKEVVSQFGSL-DVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F Q +++ +S G+IIN+ S+VG +GN GQ+NY ATKAGV TKS A E+A+ G
Sbjct: 118 FNCIQKATPQMLRQRS-GAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRG 176
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N + PGFI + M ++ D++KE IPL RFG+
Sbjct: 177 ITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDT 216
Score = 183 bits (467), Expect = 3e-55
Identities = 57/113 (50%), Positives = 75/113 (66%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
SG+IIN+ S+VG +GN GQ+NY ATKAGV TKS A E+A+ GI N + PGFI + MT
Sbjct: 133 SGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMT 192
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ D++KE IP RFG+ +I + FLASD++ YITG I V GG+
Sbjct: 193 DALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMY 245
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 218 bits (557), Expect = 2e-68
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 175 HLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 234
+++ DVS+ + + E+F R + + + AG+ L + +++V VNL
Sbjct: 54 AIAVVADVSDPKAVEAVFAEALEEFGRL-HGVAHFAGVAHSALSWNLPLEAWEKVLRVNL 112
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
G+FLV++ + L E GS++ GS+ G +G G ++YAA K GV +++A+E+A
Sbjct: 113 TGSFLVARKAGEVLEE---GGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALELA 168
Query: 295 TFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
G+R NV+LPG I+TPMT +P E PL R G+PE V
Sbjct: 169 RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEV 213
Score = 215 bits (550), Expect = 2e-67
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
+++ DVS+ + + E+F R + + + AG+ L + +++V VNL
Sbjct: 54 AIAVVADVSDPKAVEAVFAEALEEFGRL-HGVAHFAGVAHSALSWNLPLEAWEKVLRVNL 112
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
G+FLV++ + L E GS++ GS+ G +G G ++YAA K GV +++A+E+A
Sbjct: 113 TGSFLVARKAGEVLEE---GGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALELA 168
Query: 128 TFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
G+R NV+LPG I+TPM +P E PL R G+PE
Sbjct: 169 RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPE 211
Score = 184 bits (470), Expect = 1e-55
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
GS++ GS+ G +G G ++YAA K GV +++A+E+A G+R NV+LPG I+TPMT
Sbjct: 129 GGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT 187
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+P E P R G+PEE+ + FL S+ S+YITG + V GG +
Sbjct: 188 AGLPPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 240
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 217 bits (555), Expect = 4e-68
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
G ++ DV++T + ++ EK R +VLVN AG+ + +T++++ +V
Sbjct: 70 LGLGRVEAVVCDVTSTEAVDALITQTVEKAGRL-DVLVNNAGLGGQTPVVDMTDEEWDRV 128
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
+V L ++A + G I+N S++G QS+YAA KAGV A T+
Sbjct: 129 LNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCS 188
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPEAV 339
A+E FG+R N + P ++ + R +P V
Sbjct: 189 AIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEV 239
Score = 215 bits (549), Expect = 3e-67
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
G ++ DV++T + ++ EK R +VLVN AG+ + +T++++ +V
Sbjct: 71 GLGRVEAVVCDVTSTEAVDALITQTVEKAGRL-DVLVNNAGLGGQTPVVDMTDEEWDRVL 129
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
+V L ++A + G I+N S++G QS+YAA KAGV A T+ A
Sbjct: 130 NVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSA 189
Query: 124 MEMATFGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
+E FG+R N + P + ++ + R +P
Sbjct: 190 IEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPW 237
Score = 188 bits (480), Expect = 6e-57
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + G I+N S++G QS+YAA KAGV A T+ A+E FG+R N
Sbjct: 142 AALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINA 201
Query: 398 ILPGFIETPMTTCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+ P ++ + F R +P E+ I FLASD SSY+TG ++ V
Sbjct: 202 VSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSV 261
Query: 457 TGGLA 461
+ A
Sbjct: 262 SSQRA 266
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 216 bits (554), Expect = 4e-68
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L++ DVS + + F R ++LVN AGI F +LT + +++ F++N+
Sbjct: 57 LTVKCDVSQPGDVEAFGKQVISTFGRC-DILVNNAGIYPLIPFDELTFEQWKKTFEINVD 115
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
FL+++A + G IIN+ S + ++Y +TKA FT+++A ++
Sbjct: 116 SGFLMAKAFVPGMKRNGW-GRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGK 174
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLI--PLKRFGKPE 337
GI N I P + T T + + + R P
Sbjct: 175 DGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPL 218
Score = 214 bits (548), Expect = 3e-67
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L++ DVS + + F R ++LVN AGI F +LT + +++ F++N+
Sbjct: 57 LTVKCDVSQPGDVEAFGKQVISTFGRC-DILVNNAGIYPLIPFDELTFEQWKKTFEINVD 115
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
FL+++A + G IIN+ S + ++Y +TKA FT+++A ++
Sbjct: 116 SGFLMAKAFVPGMKRNGW-GRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGK 174
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLI--PLKRFGKPE 170
GI N I P + T + + + R P
Sbjct: 175 DGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPL 218
Score = 179 bits (456), Expect = 1e-53
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + G IIN+ S + ++Y +TKA FT+++A ++ GI N
Sbjct: 123 AFVPGMKRNGW-GRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 181
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLI--PFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
I P + T T + R P ++ FLASD +S+ITG +
Sbjct: 182 IAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLA 241
Query: 456 VTGGLA 461
V GG+
Sbjct: 242 VDGGMV 247
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 218 bits (557), Expect = 5e-68
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
G+ + + +DVS+ + + A T+ + F +V+ AGI + +T + +V
Sbjct: 88 LGAGNVIGVRLDVSDPGSCADAARTVVDAFGAL-DVVCANAGIFPEARLDTMTPEQLSEV 146
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKS 288
DVN+KGT QA L + G +I SI G + G G S+Y A+KA F ++
Sbjct: 147 LDVNVKGTVYTVQACLAPLTASGR-GRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRT 205
Query: 289 VAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A+E+A G+ N ILPG I T + ++ R IP+ G P +
Sbjct: 206 AAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPVDI 256
Score = 214 bits (546), Expect = 2e-66
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
G+ + + +DVS+ + + A + + F +V+ AGI + +T + +V
Sbjct: 89 GAGNVIGVRLDVSDPGSCADAARTVVDAFGAL-DVVCANAGIFPEARLDTMTPEQLSEVL 147
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSV 122
DVN+KGT QA L + G +I SI G + G G S+Y A+KA F ++
Sbjct: 148 DVNVKGTVYTVQACLAPLTASGR-GRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTA 206
Query: 123 AMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
A+E+A G+ N ILPG I T + + ++ R IP+ G P
Sbjct: 207 AIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPV 254
Score = 182 bits (464), Expect = 3e-54
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
A L + G +I SI G + G G S+Y A+KA F ++ A+E+A G+ N
Sbjct: 160 ACLAPLTASGR-GRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVN 218
Query: 397 VILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
ILPG I T + ++ R IP G P +IG + FLA+D + YITG I V
Sbjct: 219 AILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVV 278
Query: 457 TGGLA 461
GG
Sbjct: 279 DGGQV 283
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 217 bits (554), Expect = 6e-68
Identities = 61/162 (37%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
++V++ + + + + ++F NVLVN AGIT+D +++ + ++ V D NLK
Sbjct: 82 AVLNVNDATAVDALVESTLKEFGAL-NVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAV 140
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F +S+AV + +++ + G I+NI S+VG GN GQ NYAA KAGV T+++A E+ + G
Sbjct: 141 FRLSRAVLRPMMKARG-GRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRG 199
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N + PGFI+T MT +P + + IPL R G PE +
Sbjct: 200 ITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPEDI 241
Score = 212 bits (542), Expect = 4e-66
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
++V++ + + + + ++F NVLVN AGIT+D +++ + ++ V D NLK
Sbjct: 82 AVLNVNDATAVDALVESTLKEFGAL-NVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAV 140
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F +S+AV + +++ + G I+NI S+VG GN GQ NYAA KAGV T+++A E+ + G
Sbjct: 141 FRLSRAVLRPMMKARG-GRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRG 199
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N + PGFI+T M +P + + IPL R G PE
Sbjct: 200 ITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPE 239
Score = 183 bits (466), Expect = 8e-55
Identities = 52/113 (46%), Positives = 70/113 (61%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+NI S+VG GN GQ NYAA KAGV T+++A E+ + GI N + PGFI+T MT
Sbjct: 156 GGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMT 215
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+P + + IP R G PE+I + FLAS ++ YITGT + V GG+
Sbjct: 216 KGLPQEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMF 268
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 215 bits (551), Expect = 1e-67
Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ M++ + +I+ A I ++LVN AGITRD FL+++ D+++V VNL GT
Sbjct: 62 VEMNLLSEESINKAFEEIYNLVDGI-DILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGT 120
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
FLV+Q +++++ + G I+NI S+VG GN+GQ NY+ TKAG+ FTKS+A E+A
Sbjct: 121 FLVTQNSLRKMIKQRW-GRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRN 179
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ N + PGFIET MT + +++K+ + IPL RFG PE V
Sbjct: 180 VLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEV 221
Score = 210 bits (538), Expect = 8e-66
Identities = 67/160 (41%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ M++ + +I+ A I ++LVN AGITRD FL+++ D+++V VNL GT
Sbjct: 62 VEMNLLSEESINKAFEEIYNLVDGI-DILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGT 120
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
FLV+Q +++++ + G I+NI S+VG GN+GQ NY+ TKAG+ FTKS+A E+A
Sbjct: 121 FLVTQNSLRKMIKQRW-GRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRN 179
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ N + PGFIET M + +++K+ + IPL RFG PE
Sbjct: 180 VLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPE 219
Score = 181 bits (461), Expect = 2e-54
Identities = 55/112 (49%), Positives = 76/112 (67%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+NI S+VG GN+GQ NY+ TKAG+ FTKS+A E+A + N + PGFIET MT
Sbjct: 136 WGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT 195
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+ +++K+ + IP RFG PEE+ V+ FL S+ +SYITG +I V GG+
Sbjct: 196 AVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGM 247
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 215 bits (549), Expect = 2e-67
Identities = 65/162 (40%), Positives = 104/162 (64%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ ++V+N +I + I ++F ++LVN AGITRDN +++ E+++ + + NL
Sbjct: 60 MALNVTNPESIEAVLKAITDEFGGV-DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSI 118
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F +S+AV + +++ + G IIN+GS+VG MGN GQ+NYAA KAGV FTKS+A E+A+ G
Sbjct: 119 FRLSKAVLRGMMKKRQ-GRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRG 177
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ N + PGFIET MT ++ D+ + +P R G P +
Sbjct: 178 VTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREI 219
Score = 210 bits (537), Expect = 1e-65
Identities = 65/160 (40%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ ++V+N +I + AI ++F ++LVN AGITRDN +++ E+++ + + NL
Sbjct: 60 MALNVTNPESIEAVLKAITDEFGGV-DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSI 118
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F +S+AV + +++ + G IIN+GS+VG MGN GQ+NYAA KAGV FTKS+A E+A+ G
Sbjct: 119 FRLSKAVLRGMMKKRQ-GRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRG 177
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ N + PGFIET M ++ D+ + +P R G P
Sbjct: 178 VTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPR 217
Score = 181 bits (461), Expect = 2e-54
Identities = 56/113 (49%), Positives = 73/113 (64%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IIN+GS+VG MGN GQ+NYAA KAGV FTKS+A E+A+ G+ N + PGFIET MT
Sbjct: 134 QGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT 193
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ D+ + +P R G P EI + FLAS ++YITG + V GG+
Sbjct: 194 KALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 215 bits (549), Expect = 3e-67
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 3/171 (1%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
GS + + DVS+ + E+F +V+ AG+ D +T + +
Sbjct: 57 LGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGI-DVVCANAGVFPDAPLATMTPEQLNGI 115
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKS 288
F VN+ GTF QA L+ + S G ++ SI G + G G S+Y ATKA F ++
Sbjct: 116 FAVNVNGTFYAVQACLDALIASGS-GRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRT 174
Query: 289 VAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A+E+A I N I+PG I T ++ + R IP G PE +
Sbjct: 175 AAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPEDI 225
Score = 211 bits (539), Expect = 9e-66
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
GS + + DVS+ + E+F +V+ AG+ D +T + +F
Sbjct: 58 GSGKVIGVQTDVSDRAQCDALAGRAVEEFGGI-DVVCANAGVFPDAPLATMTPEQLNGIF 116
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSV 122
VN+ GTF QA L+ + S G ++ SI G + G G S+Y ATKA F ++
Sbjct: 117 AVNVNGTFYAVQACLDALIASGS-GRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTA 175
Query: 123 AMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
A+E+A I N I+PG I T + ++ + R IP G PE
Sbjct: 176 AIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPE 223
Score = 180 bits (460), Expect = 5e-54
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
A L+ + S G ++ SI G + G G S+Y ATKA F ++ A+E+A I N
Sbjct: 129 ACLDALIASGS-GRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVN 187
Query: 397 VILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
I+PG I T ++ + R IP G PE+IG + FLA+ + YITG I V
Sbjct: 188 AIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAV 247
Query: 457 TGGLA 461
GG
Sbjct: 248 DGGQV 252
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 213 bits (546), Expect = 5e-67
Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
L +++S+ +I + IK + ++LVN AGITRDN ++++E ++Q V + NL
Sbjct: 59 LVLNISDIESIQNFFAEIKAENLAI-DILVNNAGITRDNLMMRMSEDEWQSVINTNLSSI 117
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F +S+ + +++ + G II+IGS+VG GN GQ+NY A KAGV F+KS+A E+A+
Sbjct: 118 FRMSKECVRGMMKKRW-GRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRN 176
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I NV+ PGFI T MT + D+ K IP + G+P+ +
Sbjct: 177 ITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKDI 218
Score = 209 bits (534), Expect = 3e-65
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
L +++S+ +I + IK + ++LVN AGITRDN ++++E ++Q V + NL
Sbjct: 59 LVLNISDIESIQNFFAEIKAENLAI-DILVNNAGITRDNLMMRMSEDEWQSVINTNLSSI 117
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F +S+ + +++ + G II+IGS+VG GN GQ+NY A KAGV F+KS+A E+A+
Sbjct: 118 FRMSKECVRGMMKKRW-GRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRN 176
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I NV+ PGFI T M + D+ K IP + G+P+
Sbjct: 177 ITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPK 216
Score = 180 bits (459), Expect = 4e-54
Identities = 53/113 (46%), Positives = 72/113 (63%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G II+IGS+VG GN GQ+NY A KAGV F+KS+A E+A+ I NV+ PGFI T MT
Sbjct: 133 WGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMT 192
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ D+ K IP + G+P++I + FLAS+ + YITG + V GG+
Sbjct: 193 DKLTDEQKSFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGMY 245
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 213 bits (546), Expect = 5e-67
Identities = 56/170 (32%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
+ +DV+++ + A + ++E P VLV+ AG++ D + +++TE+ F++V
Sbjct: 50 GAPKGLFGVEVDVTDSDAVDRAFTAVEEHQG-PVEVLVSNAGLSADAFLMRMTEEKFEKV 108
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
+ NL G F V+Q + + K G +I IGS+ G G Q+NYAA+KAGV +S+
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSI 167
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A E++ + NV+ PG+I+T MT ++ +++++ + IP KR G P V
Sbjct: 168 ARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEV 217
Score = 208 bits (533), Expect = 5e-65
Identities = 55/162 (33%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +DV+++ + A +A++E P VLV+ AG++ D + +++TE+ F++V + NL
Sbjct: 56 FGVEVDVTDSDAVDRAFTAVEEHQG-PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLT 114
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G F V+Q + + K G +I IGS+ G G Q+NYAA+KAGV +S+A E++
Sbjct: 115 GAFRVAQRASRSMQRNKF-GRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSK 173
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ NV+ PG+I+T M ++ +++++ + IP KR G P
Sbjct: 174 ANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPA 215
Score = 179 bits (456), Expect = 1e-53
Identities = 47/113 (41%), Positives = 73/113 (64%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G +I IGS+ G G Q+NYAA+KAGV +S+A E++ + NV+ PG+I+T MT
Sbjct: 132 FGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMT 191
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +++++ + IP KR G P E+ V+ FLAS+ +SYI+G +I V GG+
Sbjct: 192 RALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMG 244
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 214 bits (547), Expect = 6e-67
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
+V + I I E F R +V VN A ++L E + ++N K
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRL-DVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+Q K + + G I++I S+ + +KA +EA T+ +A+E++ I
Sbjct: 121 AQEAAKLMEKNGG-GHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIV 179
Query: 301 NVILPGFIETPMTTSVP--DKVKETFTRLIPLKRFGKPE 337
N + G I+T P + + E + P R + +
Sbjct: 180 NAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIK 218
Score = 211 bits (540), Expect = 7e-66
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 4/159 (2%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
+V + I I E F R +V VN A ++L E + ++N K
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRL-DVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+Q K + + G I++I S+ + +KA +EA T+ +A+E++ I
Sbjct: 121 AQEAAKLMEKNGG-GHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIV 179
Query: 134 NVILPGFIETPMITSVP--DKVKETFTRLIPLKRFGKPE 170
N + G I+T + P + + E + P R + +
Sbjct: 180 NAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIK 218
Score = 181 bits (463), Expect = 1e-54
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
K + + G I++I S+ + +KA +EA T+ +A+E++ I N
Sbjct: 123 EAAKLMEKNGG-GHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNA 181
Query: 398 ILPGFIETPMTTCVP--DKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ G I+T P + + E + P R + +++ + + FL S ++ I G I
Sbjct: 182 VSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTII 241
Query: 456 VTGGLA 461
V GG +
Sbjct: 242 VDGGRS 247
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 213 bits (545), Expect = 7e-67
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
MDV++ + ++ + + R + LVN AGI R +L+++D+QQ F VN+ G
Sbjct: 51 EVMDVADAAQVAQVCQRLLAETERL-DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGA 109
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F + Q + + G+I+ + S +G S Y A+KA +++ SV +E+A G
Sbjct: 110 FNLFQQTMNQFRRQRG-GAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSG 168
Query: 298 IRCNVILPGFIETPMTTSVPDK----------VKETFTRLIPLKRFGKPEAV 339
+RCNV+ PG +T M ++ E F IPL + +P+ +
Sbjct: 169 VRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI 220
Score = 210 bits (538), Expect = 9e-66
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
MDV++ + ++ + + R + LVN AGI R +L+++D+QQ F VN+ G
Sbjct: 51 EVMDVADAAQVAQVCQRLLAETERL-DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGA 109
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F + Q + + G+I+ + S +G S Y A+KA +++ SV +E+A G
Sbjct: 110 FNLFQQTMNQFRRQRG-GAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSG 168
Query: 131 IRCNVILPGFIETPMITSVPDK----------VKETFTRLIPLKRFGKPE 170
+RCNV+ PG +T M ++ E F IPL + +P+
Sbjct: 169 VRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQ 218
Score = 178 bits (455), Expect = 2e-53
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ + G+I+ + S +G S Y A+KA +++ SV +E+A G+RCNV
Sbjct: 115 QTMNQFRRQRG-GAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNV 173
Query: 398 ILPGFIETPMTTCVPDK----------VKETFTRLIPFKRFGKPEEIGEVICFLASDRSS 447
+ PG +T M + E F IP + +P+EI I FLASD +S
Sbjct: 174 VSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLAS 233
Query: 448 YITGTLIKVTGGLA 461
+IT I V GG
Sbjct: 234 HITLQDIVVDGGST 247
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 213 bits (546), Expect = 8e-67
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
++S+ +I + + ++LVN AGITRD F+++ ++D+ V VNL
Sbjct: 78 FSANLSDRKSIKQLAEVAEREMEGI-DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAA 136
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+++ + ++ + G IINI SIVG +GN GQ+NY A KAG+ F+K++A E+A+
Sbjct: 137 STLTRELIHSMMRRRY-GRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRN 195
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N I PGFI++ MT + +K KE +IP+KR G E +
Sbjct: 196 ITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEI 237
Score = 209 bits (535), Expect = 4e-65
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
++S+ +I + + ++LVN AGITRD F+++ ++D+ V VNL
Sbjct: 78 FSANLSDRKSIKQLAEVAEREMEGI-DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAA 136
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+++ + ++ + G IINI SIVG +GN GQ+NY A KAG+ F+K++A E+A+
Sbjct: 137 STLTRELIHSMMRRRY-GRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRN 195
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N I PGFI++ M + +K KE +IP+KR G E
Sbjct: 196 ITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGE 235
Score = 180 bits (460), Expect = 5e-54
Identities = 54/113 (47%), Positives = 74/113 (65%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI SIVG +GN GQ+NY A KAG+ F+K++A E+A+ I N I PGFI++ MT
Sbjct: 152 YGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMT 211
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +K KE +IP KR G EEI +LASD ++Y+TG + + GG+A
Sbjct: 212 DKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMA 264
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 213 bits (546), Expect = 9e-67
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+DV++ + + F + +VL+N AGITRD F+K+T+ D+ V +L
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKV-DVLINNAGITRDATFMKMTKGDWDAVMRTDLDAM 138
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F V++ +VE + G I+NIGS+ G G GQ+NYA+ KAG+ FTK++A+E A G
Sbjct: 139 FNVTKQFIAGMVERRF-GRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRG 197
Query: 298 IRCNVILPGFIETPMTTSVPDKVKET-FTRLIPLKRFGKPEAV 339
I N + PG++ T M +VP V E IP+ R G+P+ V
Sbjct: 198 ITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEV 240
Score = 210 bits (536), Expect = 3e-65
Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+DV++ + + F + +VL+N AGITRD F+K+T+ D+ V +L
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKV-DVLINNAGITRDATFMKMTKGDWDAVMRTDLDAM 138
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F V++ +VE + G I+NIGS+ G G GQ+NYA+ KAG+ FTK++A+E A G
Sbjct: 139 FNVTKQFIAGMVERRF-GRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRG 197
Query: 131 IRCNVILPGFIETPMITSVPDKVKET-FTRLIPLKRFGKPE 170
I N + PG++ T M+ +VP V E IP+ R G+P+
Sbjct: 198 ITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPD 238
Score = 178 bits (453), Expect = 6e-53
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+VE + G I+NIGS+ G G GQ+NYA+ KAG+ FTK++A+E A GI N
Sbjct: 144 QFIAGMVERRF-GRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNT 202
Query: 398 ILPGFIETPMTTCVPDKVKET-FTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+ PG++ T M VP V E IP R G+P+E+ +I FL SD + ++TG + +
Sbjct: 203 VSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAI 262
Query: 457 TGGLA 461
GG+
Sbjct: 263 NGGMH 267
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 213 bits (545), Expect = 1e-66
Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
E L++ D+++T + A I+E P VL+ AG+T+D ++++E+DF V
Sbjct: 56 EPPEGFLAVKCDITDTEQVEQAYKEIEETHG-PVEVLIANAGVTKDQLLMRMSEEDFTSV 114
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
+ NL GTF V + + ++ K G ++ I S+VG +G+ GQ+NYAA+KAG+ F +S+
Sbjct: 115 VETNLTGTFRVVKRANRAMLRAKK-GRVVLISSVVGLLGSAGQANYAASKAGLVGFARSL 173
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A E+ + I NV+ PGF++T MT + D+ + +PL R+ +PE +
Sbjct: 174 ARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRYARPEEI 223
Score = 208 bits (533), Expect = 6e-65
Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L++ D+++T + A I+E P VL+ AG+T+D ++++E+DF V + NL
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHG-PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLT 120
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF V + + ++ K G ++ I S+VG +G+ GQ+NYAA+KAG+ F +S+A E+ +
Sbjct: 121 GTFRVVKRANRAMLRAKK-GRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGS 179
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I NV+ PGF++T M + D+ + +PL R+ +PE
Sbjct: 180 RNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRYARPE 221
Score = 179 bits (456), Expect = 1e-53
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G ++ I S+VG +G+ GQ+NYAA+KAG+ F +S+A E+ + I NV+ PGF++T MT
Sbjct: 138 KGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMT 197
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ D+ + +P R+ +PEEI + FLASD +SYITG +I V GGL
Sbjct: 198 KVLTDEQRANIVSQVPLGRYARPEEIAATVRFLASDDASYITGAVIPVDGGLG 250
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 211 bits (541), Expect = 4e-66
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV+ S + + + ++F + +V++N AG+ +++ D+ +V D NL G FL
Sbjct: 65 DVTVESDVINLVQSAIKEFGKL-DVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLG 123
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
S+ K VE G++IN+ S+ ++ +YAA+K G++ T+++A+E A GIR
Sbjct: 124 SREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRV 183
Query: 301 NVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPEAV 339
N I PG I TP+ + + +IP+ G+PE +
Sbjct: 184 NNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEI 224
Score = 209 bits (534), Expect = 4e-65
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV+ S + + + ++F + +V++N AG+ +++ D+ +V D NL G FL
Sbjct: 65 DVTVESDVINLVQSAIKEFGKL-DVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLG 123
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
S+ K VE G++IN+ S+ ++ +YAA+K G++ T+++A+E A GIR
Sbjct: 124 SREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRV 183
Query: 134 NVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
N I PG I TP+ + + +IP+ G+PE
Sbjct: 184 NNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPE 222
Score = 184 bits (470), Expect = 2e-55
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
K VE G++IN+ S+ ++ +YAA+K G++ T+++A+E A GIR N
Sbjct: 126 EAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNN 185
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
I PG I TP+ + + +IP G+PEEI V +LAS +SY+TG +
Sbjct: 186 IGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLF 245
Query: 456 VTGGLA 461
GG+
Sbjct: 246 ADGGMT 251
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 211 bits (540), Expect = 8e-66
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAG--ITRDNWFLKLTEKDFQQVFDVN 233
+ DV+ + + F + + L+N AG + + E ++ ++ N
Sbjct: 60 QFVQADVTKKEDLHKIVEEAMSHFGKI-DFLINNAGPYVFERKKLVDYEEDEWNEMIQGN 118
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIG--SIVGQMGNMGQSNYAATKAGVEAFTKSVAM 291
L F + + V + + G IIN G G + +S +AA K G+ + TK+VA
Sbjct: 119 LTAVFHLLKLVVPVMRKQNF-GRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAY 177
Query: 292 EMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
E A +GI N++ PG I M + + ++ P+ R G E +
Sbjct: 178 EEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDI 225
Score = 207 bits (530), Expect = 2e-64
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 6/166 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAG--ITRDNWFLKLTEKDFQQVFDVN 66
+ DV+ + + F + + L+N AG + + E ++ ++ N
Sbjct: 60 QFVQADVTKKEDLHKIVEEAMSHFGKI-DFLINNAGPYVFERKKLVDYEEDEWNEMIQGN 118
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIG--SIVGQMGNMGQSNYAATKAGVEAFTKSVAM 124
L F + + V + + G IIN G G + +S +AA K G+ + TK+VA
Sbjct: 119 LTAVFHLLKLVVPVMRKQNF-GRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAY 177
Query: 125 EMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
E A +GI N++ PG I M + + ++ P+ R G E
Sbjct: 178 EEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGE 223
Score = 185 bits (471), Expect = 9e-56
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 338 AVCKELVETKSSGSIINIG--SIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
V + + G IIN G G + +S +AA K G+ + TK+VA E A +GI
Sbjct: 128 LVVPVMRKQNF-GRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITA 186
Query: 396 NVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
N++ PG I M + ++ P R G E+I I FL D S ITGT+I+
Sbjct: 187 NMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIE 246
Query: 456 VTGGLA 461
VTG +
Sbjct: 247 VTGAVD 252
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 211 bits (539), Expect = 9e-66
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ +DV+ +++ AM + ++L AG++ + +T++++ FDVN +
Sbjct: 61 FAVEVDVTKRASVDAAMQKAIDALGGF-DLLCANAGVSTMRPAVDITDEEWDFNFDVNAR 119
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G FL +Q C+ + + + G I+N S+ ++G ++Y+A+K V +T+++A EMA
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP 179
Query: 296 FGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPEAV 339
IR N + PGF++T M P+ V+ + L PL R +PE V
Sbjct: 180 KNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDV 234
Score = 208 bits (533), Expect = 6e-65
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ +DV+ +++ AM + ++L AG++ + +T++++ FDVN +
Sbjct: 61 FAVEVDVTKRASVDAAMQKAIDALGGF-DLLCANAGVSTMRPAVDITDEEWDFNFDVNAR 119
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G FL +Q C+ + + + G I+N S+ ++G ++Y+A+K V +T+++A EMA
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP 179
Query: 129 FGIRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
IR N + PGF++T M P+ V+ + L PL R +PE
Sbjct: 180 KNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPE 232
Score = 175 bits (445), Expect = 6e-52
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
C+ + + + G I+N S+ ++G ++Y+A+K V +T+++A EMA IR N
Sbjct: 127 IACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNC 186
Query: 398 ILPGFIETPMTTCV-----------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRS 446
+ PGF++T M P+ V+ + L P R +PE++ +V+ FLASD +
Sbjct: 187 VCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAA 246
Query: 447 SYITGTLIKVTGGLA 461
++TG I VTGG+
Sbjct: 247 RFMTGQGINVTGGVR 261
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 210 bits (537), Expect = 2e-65
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DVSNT ++ + I + L+ AG++ +LT +DF V+DVN+ G F
Sbjct: 72 DVSNTDIVTKTIQQIDADLGPI-SGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 130
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQM-------GNMGQSNYAATKAGVEAFTKSVAMEM 293
+AV K ++ + GSI+ S+ Q+ G++ Q Y ++KA K +A E
Sbjct: 131 CRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEW 190
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
A+ GIR N + PG++ T T + K+++ IPL RF +PE
Sbjct: 191 ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPE 234
Score = 207 bits (528), Expect = 4e-64
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 8/164 (4%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DVSNT ++ + I + L+ AG++ +LT +DF V+DVN+ G F
Sbjct: 72 DVSNTDIVTKTIQQIDADLGPI-SGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 130
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQM-------GNMGQSNYAATKAGVEAFTKSVAMEM 126
+AV K ++ + GSI+ S+ Q+ G++ Q Y ++KA K +A E
Sbjct: 131 CRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEW 190
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
A+ GIR N + PG++ T + K+++ IPL RF +PE
Sbjct: 191 ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPE 234
Score = 177 bits (452), Expect = 6e-53
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQM-------GNMGQSNYAATKAGVEAFTKSVAMEMAT 390
AV K ++ + GSI+ S+ Q+ G++ Q Y ++KA K +A E A+
Sbjct: 133 AVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWAS 192
Query: 391 FGIRCNVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYIT 450
GIR N + PG++ T T + K+++ IP RF +PEE+ L SD ++Y+T
Sbjct: 193 AGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMT 252
Query: 451 GTLIKVTGGLA 461
G + GG
Sbjct: 253 GGEYFIDGGQL 263
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 210 bits (536), Expect = 2e-65
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ L +V++ + ++F + VLVN AG + DF+ F +NL
Sbjct: 64 IGLECNVTDEQHREAVIKAALDQFGKI-TVLVNNAGGGGPK-PFDMPMSDFEWAFKLNLF 121
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F +SQ + + G+I+NI S+ G+ N+ ++Y ++KA V T+++A ++
Sbjct: 122 SLFRLSQLAAPHMQKAGG-GAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGP 180
Query: 296 FGIRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPE 337
GIR N I PG I+T +V +++ + PL R G+ +
Sbjct: 181 MGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQ 223
Score = 207 bits (530), Expect = 2e-64
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ L +V++ + A ++F + VLVN AG + DF+ F +NL
Sbjct: 64 IGLECNVTDEQHREAVIKAALDQFGKI-TVLVNNAGGGGPK-PFDMPMSDFEWAFKLNLF 121
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F +SQ + + G+I+NI S+ G+ N+ ++Y ++KA V T+++A ++
Sbjct: 122 SLFRLSQLAAPHMQKAGG-GAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGP 180
Query: 129 FGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
GIR N I PG I+T + +V +++ + PL R G+ +
Sbjct: 181 MGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQ 223
Score = 177 bits (452), Expect = 6e-53
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ + G+I+NI S+ G+ N+ ++Y ++KA V T+++A ++ GIR N
Sbjct: 129 LAAPHMQKAGG-GAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNA 187
Query: 398 ILPGFIETPMTTCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
I PG I+T V +++ + P R G+ ++I FL S +++I+G ++ V
Sbjct: 188 IAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTV 247
Query: 457 TGGL 460
+GG
Sbjct: 248 SGGG 251
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 210 bits (537), Expect = 2e-65
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 8/170 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGIT---RDNWFLKLTEKDFQQVFDV 232
+ L D+++ S+ + + +F R + LVN AGI RD+ FL L ++F + V
Sbjct: 82 IFLRADLADLSSHQATVDAVVAEFGRI-DCLVNNAGIASIVRDD-FLDLKPENFDTIVGV 139
Query: 233 NLKGTFLVSQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 290
NL+GT +QAV K ++ + + S SIINI S+ M + + +Y +KAG+ AF++ +A
Sbjct: 140 NLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLA 199
Query: 291 MEMATFGIRCNVILPGFIETPMTTSVPDKVKETF-TRLIPLKRFGKPEAV 339
+ +A GI + PG I + MT +V K + L+P++R+G+PE +
Sbjct: 200 LRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDI 249
Score = 206 bits (527), Expect = 9e-64
Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT---RDNWFLKLTEKDFQQVFDV 65
+ L D+++ S+ + A+ +F R + LVN AGI RD+ FL L ++F + V
Sbjct: 82 IFLRADLADLSSHQATVDAVVAEFGRI-DCLVNNAGIASIVRDD-FLDLKPENFDTIVGV 139
Query: 66 NLKGTFLVSQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
NL+GT +QAV K ++ + + S SIINI S+ M + + +Y +KAG+ AF++ +A
Sbjct: 140 NLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLA 199
Query: 124 MEMATFGIRCNVILPGFIETPMITSVPDKVKETF-TRLIPLKRFGKPE 170
+ +A GI + PG I + M +V K + L+P++R+G+PE
Sbjct: 200 LRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPE 247
Score = 182 bits (464), Expect = 2e-54
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 338 AVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
AV K ++ + + S SIINI S+ M + + +Y +KAG+ AF++ +A+ +A GI
Sbjct: 150 AVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAV 209
Query: 396 NVILPGFIETPMTTCVPDKVKETF-TRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+ PG I + MT V K + L+P +R+G+PE+IG ++ LA + + TG++I
Sbjct: 210 FEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVI 269
Query: 455 KVTGGLA 461
+ GGL+
Sbjct: 270 QADGGLS 276
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 210 bits (537), Expect = 3e-65
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
DV + I ++ + E++ +VLVN AG +L ++ + V + NL G
Sbjct: 76 RTCDVRSVPEIEALVAAVVERYGPV-DVLVNNAGRPGGGATAELADELWLDVVETNLTGV 134
Query: 238 FLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 296
F V++ V K + +G I+NI S G+ G + + Y+A+K GV FTK++ +E+A
Sbjct: 135 FRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELART 194
Query: 297 GIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPEAV 339
GI N + PGF+ETPM SV ++ + T +P+ R+ +P V
Sbjct: 195 GITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEV 248
Score = 207 bits (528), Expect = 6e-64
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
DV + I ++A+ E++ +VLVN AG +L ++ + V + NL G
Sbjct: 76 RTCDVRSVPEIEALVAAVVERYGPV-DVLVNNAGRPGGGATAELADELWLDVVETNLTGV 134
Query: 71 FLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 129
F V++ V K + +G I+NI S G+ G + + Y+A+K GV FTK++ +E+A
Sbjct: 135 FRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELART 194
Query: 130 GIRCNVILPGFIETPM-----------ITSVPDKVKETFTRLIPLKRFGKPE 170
GI N + PGF+ETPM ++ + T +P+ R+ +P
Sbjct: 195 GITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPS 246
Score = 176 bits (449), Expect = 2e-52
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+G I+NI S G+ G + + Y+A+K GV FTK++ +E+A GI N + PGF+ETPM
Sbjct: 152 TGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMA 211
Query: 409 -----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
++ + T +P R+ +P E+ E++ +L ++ +T + V
Sbjct: 212 ASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVC 271
Query: 458 GGLA 461
GGL
Sbjct: 272 GGLG 275
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 209 bits (534), Expect = 4e-65
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+++ +DVS+ + A+ ++ +V+VN AG+ +T + +V+++N+K
Sbjct: 54 VAVKVDVSDRDQVFAAVEQARKTLGGF-DVIVNNAGVAPSTPIESITPEIVDKVYNINVK 112
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G QA + + G IIN S G +GN + Y+++K V T++ A ++A
Sbjct: 113 GVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP 172
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKET-----------FTRLIPLKRFGKPE 337
GI N PG ++TPM + +V E F + I L R +PE
Sbjct: 173 LGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPE 225
Score = 206 bits (528), Expect = 4e-64
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+++ +DVS+ + A+ ++ +V+VN AG+ +T + +V+++N+K
Sbjct: 54 VAVKVDVSDRDQVFAAVEQARKTLGGF-DVIVNNAGVAPSTPIESITPEIVDKVYNINVK 112
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G QA + + G IIN S G +GN + Y+++K V T++ A ++A
Sbjct: 113 GVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP 172
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKET-----------FTRLIPLKRFGKPE 170
GI N PG ++TPM + +V E F + I L R +PE
Sbjct: 173 LGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPE 225
Score = 171 bits (435), Expect = 2e-50
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + + G IIN S G +GN + Y+++K V T++ A ++A GI N
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNG 179
Query: 398 ILPGFIETPMTTCVPDKVKET-----------FTRLIPFKRFGKPEEIGEVICFLASDRS 446
PG ++TPM + +V E F + I R +PE++ + +LAS S
Sbjct: 180 YCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDS 239
Query: 447 SYITGTLIKVTGGL 460
Y+TG + + GG+
Sbjct: 240 DYMTGQSLLIDGGM 253
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 209 bits (534), Expect = 4e-65
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ D+S T + E+F R + LVN AG+ F+++T++D+ VN+
Sbjct: 71 HTVAGDISKPETADRIVREGIERFGRI-DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVA 129
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAA--TKAGVEAFTKSVAMEM 293
G F ++Q E+++ SG I++I + + +G + A TK G+ A T+S+AME
Sbjct: 130 GFFHITQRAAAEMLKQG-SGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ G+R N + PG I+TPM P + T L P+ R G+ V
Sbjct: 189 SRSGVRVNAVSPGVIKTPMH---PAETHSTLAGLHPVGRMGEIRDV 231
Score = 207 bits (528), Expect = 4e-64
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ D+S T + E+F R + LVN AG+ F+++T++D+ VN+
Sbjct: 71 HTVAGDISKPETADRIVREGIERFGRI-DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVA 129
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAA--TKAGVEAFTKSVAMEM 126
G F ++Q E+++ SG I++I + + +G + A TK G+ A T+S+AME
Sbjct: 130 GFFHITQRAAAEMLKQG-SGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ G+R N + PG I+TPM P + T L P+ R G+
Sbjct: 189 SRSGVRVNAVSPGVIKTPM---HPAETHSTLAGLHPVGRMGEIR 229
Score = 164 bits (418), Expect = 7e-48
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAA--TKAGVEAFTKSVAMEMATFGIRC 395
E+++ S G I++I + + +G + A TK G+ A T+S+AME + G+R
Sbjct: 137 RAAAEMLKQGS-GHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRV 195
Query: 396 NVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
N + PG I+TPM P + T L P R G+ ++ + + +L + +ITG ++
Sbjct: 196 NAVSPGVIKTPMH---PAETHSTLAGLHPVGRMGEIRDVVDAVLYLEH--AGFITGEILH 250
Query: 456 VTGGL 460
V GG
Sbjct: 251 VDGGQ 255
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 208 bits (532), Expect = 8e-65
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ + +DV++ + +A+ EK +VLVN AGI + L++TE+D +Q++ VN+
Sbjct: 56 VFVGLDVTDKANFDSAIDEAAEKLGGF-DVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVF 114
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F QA ++ E G IIN SI G S Y+ TK V T++ A E+A
Sbjct: 115 SVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP 174
Query: 296 FGIRCNVILPGFIETPMTTSVPDKV-----------KETFTRLIPLKRFGKPEAV 339
G N PG + T M + ++ + ++ I L R PE V
Sbjct: 175 KGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDV 229
Score = 205 bits (525), Expect = 1e-63
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ + +DV++ + +A+ EK +VLVN AGI + L++TE+D +Q++ VN+
Sbjct: 56 VFVGLDVTDKANFDSAIDEAAEKLGGF-DVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVF 114
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F QA ++ E G IIN SI G S Y+ TK V T++ A E+A
Sbjct: 115 SVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP 174
Query: 129 FGIRCNVILPGFIETPMITSVPDKV-----------KETFTRLIPLKRFGKPE 170
G N PG + T M + ++ + ++ I L R PE
Sbjct: 175 KGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPE 227
Score = 170 bits (432), Expect = 4e-50
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++ E G IIN SI G S Y+ TK V T++ A E+A G N
Sbjct: 122 AASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNA 181
Query: 398 ILPGFIETPMTTCVPDKV-----------KETFTRLIPFKRFGKPEEIGEVICFLASDRS 446
PG + T M + ++ + ++ I R PE++ ++ FLAS+ S
Sbjct: 182 YAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENS 241
Query: 447 SYITGTLIKVTGGL 460
+Y+TG ++ V GG+
Sbjct: 242 NYVTGQVMLVDGGM 255
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 214 bits (547), Expect = 1e-64
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
L +DV+ + + + E ++LVN AGITRD + EK + V VNL
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAP 323
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+++ + + G +I + S+ G GN GQ+NYA TKAG+ +++A +A G
Sbjct: 324 QRLTEGLVGNGTIGEG-GRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKG 382
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N + PGFIET MT ++P +E RL L + G+P V
Sbjct: 383 ITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDV 424
Score = 210 bits (536), Expect = 5e-63
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
L +DV+ + + + E ++LVN AGITRD + EK + V VNL
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAP 323
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+++ + + G +I + S+ G GN GQ+NYA TKAG+ +++A +A G
Sbjct: 324 QRLTEGLVGNGTIGEG-GRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKG 382
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N + PGFIET M ++P +E RL L + G+P
Sbjct: 383 ITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPV 422
Score = 180 bits (460), Expect = 5e-52
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 336 PEAVCKELVET---KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 392
P+ + + LV G +I + S+ G GN GQ+NYA TKAG+ +++A +A G
Sbjct: 323 PQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKG 382
Query: 393 IRCNVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGT 452
I N + PGFIET MT +P +E RL + G+P ++ E+I + AS S+ +TG
Sbjct: 383 ITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDVAELIAYFASPASNAVTGN 442
Query: 453 LIKVTGGLA 461
I+V G
Sbjct: 443 TIRVCGQAM 451
Score = 58.5 bits (142), Expect = 2e-09
Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 32/141 (22%)
Query: 322 ETFTRLIPLKRFGKPEAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFT 381
L L F P + + L ++ +G+ + G++ + +E FT
Sbjct: 94 TEAEGLKELYTFFTP--LLRNL---APCARVVVVGTTPAEAGSVHA---QVVQRALEGFT 145
Query: 382 KSVAMEMATFGIRCNVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFL 441
+S+ E+ G +++ + + + F+
Sbjct: 146 RSLGKELRR-GATVSLV-----------------------YLSADAKPGATGLESTMRFI 181
Query: 442 ASDRSSYITGTLIKVTGGLAT 462
S +S+Y+ G + +V +T
Sbjct: 182 LSAKSAYVDGQVFRVGAADST 202
Score = 50.0 bits (120), Expect = 1e-06
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 62 VFDV-------NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAG 114
VFD LK + + + L ++ +G+ + G++ +
Sbjct: 87 VFDATGITEAEGLKELYTFFTPLLRNL---APCARVVVVGTTPAEAGSVHA---QVVQRA 140
Query: 115 VEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRF 166
+E FT+S+ E+ G +++ + K T L RF
Sbjct: 141 LEGFTRSLGKELRR-GATVSLVY-----------LSADAKPGATGLESTMRF 180
Score = 50.0 bits (120), Expect = 1e-06
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 229 VFDV-------NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAG 281
VFD LK + + + L ++ +G+ + G++ +
Sbjct: 87 VFDATGITEAEGLKELYTFFTPLLRNL---APCARVVVVGTTPAEAGSVHA---QVVQRA 140
Query: 282 VEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRF 333
+E FT+S+ E+ G +++ + K T L RF
Sbjct: 141 LEGFTRSLGKELRR-GATVSLVY-----------LSADAKPGATGLESTMRF 180
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 207 bits (529), Expect = 3e-64
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
D S M T+ F ++L+N G R L T +DF NL+
Sbjct: 68 SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 127
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+ +SQ L + G+II + SI G + S Y+ATK + +++A E A+ G
Sbjct: 128 YHLSQLAHPLLKASGC-GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDG 186
Query: 298 IRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPEAV 339
IR N + P I TP+ +V D+ K+ PL RFG+PE V
Sbjct: 187 IRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEV 229
Score = 203 bits (520), Expect = 8e-63
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
D S M + F ++L+N G R L T +DF NL+
Sbjct: 68 SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 127
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+ +SQ L + G+II + SI G + S Y+ATK + +++A E A+ G
Sbjct: 128 YHLSQLAHPLLKASGC-GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDG 186
Query: 131 IRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
IR N + P I TP+ +V D+ K+ PL RFG+PE
Sbjct: 187 IRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPE 227
Score = 169 bits (431), Expect = 9e-50
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
L + G+II + SI G + S Y+ATK + +++A E A+ GIR N
Sbjct: 133 LAHPLLKASGC-GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANA 191
Query: 398 ILPGFIETPMTTCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+ P I TP+ V D+ K+ P RFG+PEE+ ++ FL +SYITG I V
Sbjct: 192 VAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICV 251
Query: 457 TGGLA 461
GGL
Sbjct: 252 DGGLT 256
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 207 bits (530), Expect = 3e-64
Identities = 61/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
DV++T + A++ E+F P +LVN AG L + + V D NL
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFG-PIGILVNSAGRNGGGETADLDDALWADVLDTNLT 134
Query: 236 GTFLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
G F V++ V + ++ G I+NI S G+ G M + Y A+K GV FTKSV E+A
Sbjct: 135 GVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELA 194
Query: 295 TFGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPEAV 339
GI N + PG++ETPM V +V E F IPL R+ PE V
Sbjct: 195 KTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEV 250
Score = 205 bits (523), Expect = 4e-63
Identities = 61/174 (35%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
DV++T + A++A E+F P +LVN AG L + + V D NL
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFG-PIGILVNSAGRNGGGETADLDDALWADVLDTNLT 134
Query: 69 GTFLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
G F V++ V + ++ G I+NI S G+ G M + Y A+K GV FTKSV E+A
Sbjct: 135 GVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELA 194
Query: 128 TFGIRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
GI N + PG++ETPM V +V E F IPL R+ PE
Sbjct: 195 KTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPE 248
Score = 174 bits (443), Expect = 2e-51
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+NI S G+ G M + Y A+K GV FTKSV E+A GI N + PG++ETPM
Sbjct: 154 WGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMA 213
Query: 409 -----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+V E F IP R+ PEE+ ++ +L +D ++ IT + V
Sbjct: 214 ERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVC 273
Query: 458 GGLA 461
GGL
Sbjct: 274 GGLG 277
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 207 bits (529), Expect = 4e-64
Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ DVS S + + + E++ R +VLVN AGITRD L++ D+Q V D+NL
Sbjct: 81 FAVKADVSQESEVEALFAAVIERWGRL-DVLVNNAGITRDTLLLRMKRDDWQSVLDLNLG 139
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G FL S+A K +++ +S G IINI S+VG+MGN GQ+NY+A KAGV TK+VA E+A+
Sbjct: 140 GVFLCSRAAAKIMLKQRS-GRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELAS 198
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
GI N + PGFI T MT+ + E +IPL R+G+ V
Sbjct: 199 RGITVNAVAPGFIATDMTSELAA---EKLLEVIPLGRYGEAAEV 239
Score = 202 bits (517), Expect = 2e-62
Identities = 72/162 (44%), Positives = 102/162 (62%), Gaps = 5/162 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ DVS S + +A+ E++ R +VLVN AGITRD L++ D+Q V D+NL
Sbjct: 81 FAVKADVSQESEVEALFAAVIERWGRL-DVLVNNAGITRDTLLLRMKRDDWQSVLDLNLG 139
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G FL S+A K +++ +S G IINI S+VG+MGN GQ+NY+A KAGV TK+VA E+A+
Sbjct: 140 GVFLCSRAAAKIMLKQRS-GRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELAS 198
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
GI N + PGFI T M + + E +IPL R+G+
Sbjct: 199 RGITVNAVAPGFIATDMTSELAA---EKLLEVIPLGRYGEAA 237
Score = 167 bits (426), Expect = 4e-49
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
SG IINI S+VG+MGN GQ+NY+A KAGV TK+VA E+A+ GI N + PGFI T MT
Sbjct: 157 SGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT 216
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDR-SSYITGTLIKVTGGLA 461
+ + E +IP R+G+ E+ V+ FLA+D ++YITG +I + GGL
Sbjct: 217 SELAA---EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLV 267
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 205 bits (525), Expect = 8e-64
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 5/166 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L++ MDV NT I + I EKF R ++L+N A L+ + V ++ L
Sbjct: 58 LTVQMDVRNTDDIQKMIEQIDEKFGRI-DILINNAAGNFICPAEDLSVNGWNSVINIVLN 116
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GTF SQA+ K +E G+IIN+ + G + AA KAGV A TK++A+E
Sbjct: 117 GTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGR 176
Query: 296 -FGIRCNVILPGFIETPMTTS---VPDKVKETFTRLIPLKRFGKPE 337
+GIR N I PG IE + +++ + + +PL R G PE
Sbjct: 177 KYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPE 222
Score = 203 bits (519), Expect = 7e-63
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 5/166 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L++ MDV NT I + I EKF R ++L+N A L+ + V ++ L
Sbjct: 58 LTVQMDVRNTDDIQKMIEQIDEKFGRI-DILINNAAGNFICPAEDLSVNGWNSVINIVLN 116
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF SQA+ K +E G+IIN+ + G + AA KAGV A TK++A+E
Sbjct: 117 GTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGR 176
Query: 129 -FGIRCNVILPGFIETPMITS---VPDKVKETFTRLIPLKRFGKPE 170
+GIR N I PG IE + +++ + + +PL R G PE
Sbjct: 177 KYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPE 222
Score = 170 bits (434), Expect = 2e-50
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT-FGIRCN 396
A+ K +E G+IIN+ + G + AA KAGV A TK++A+E +GIR N
Sbjct: 124 AIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVN 183
Query: 397 VILPGFIETPMTT---CVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
I PG IE + +++ + + +P R G PEEI + +L SD ++YI GT
Sbjct: 184 AIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTC 243
Query: 454 IKVTGGL 460
+ + GG
Sbjct: 244 MTMDGGQ 250
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 205 bits (524), Expect = 1e-63
Identities = 63/162 (38%), Positives = 99/162 (61%), Gaps = 6/162 (3%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+++N S + K S ++LV AGIT D +++ ++DF +V D+NLK
Sbjct: 65 EVCNLANKEECSNLI----SKTSNL-DILVCNAGITSDTLAIRMKDQDFDKVIDINLKAN 119
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F++++ K++++ + G IINI SIVG GN GQ+NY A+KAG+ TKS++ E+AT G
Sbjct: 120 FILNREAIKKMIQKRY-GRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRG 178
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N + PGFI++ MT + +K +E + IPL +G PE V
Sbjct: 179 ITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDV 220
Score = 200 bits (512), Expect = 6e-62
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+++N S + K S ++LV AGIT D +++ ++DF +V D+NLK
Sbjct: 65 EVCNLANKEECS----NLISKTSNL-DILVCNAGITSDTLAIRMKDQDFDKVIDINLKAN 119
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F++++ K++++ + G IINI SIVG GN GQ+NY A+KAG+ TKS++ E+AT G
Sbjct: 120 FILNREAIKKMIQKRY-GRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRG 178
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I N + PGFI++ M + +K +E + IPL +G PE
Sbjct: 179 ITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPE 218
Score = 179 bits (456), Expect = 1e-53
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI SIVG GN GQ+NY A+KAG+ TKS++ E+AT GI N + PGFI++ MT
Sbjct: 135 YGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMT 194
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +K +E + IP +G PE++ + FLAS+ +SYITG + V GG+
Sbjct: 195 DKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGML 247
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 205 bits (524), Expect = 1e-63
Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ D+++ +S K + ++LVN AG + DF++ +++N+
Sbjct: 63 FACRCDITSEQELSALADFAISKLGKV-DILVNNAGGGGPK-PFDMPMADFRRAYELNVF 120
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F +SQ V E+ + G I+ I S+ + N+ ++YA++KA +++A ++
Sbjct: 121 SFFHLSQLVAPEMEKNGG-GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGE 179
Query: 296 FGIRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPE 337
IR N I PG I T SV ++++ + P++R G+P+
Sbjct: 180 KNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQ 222
Score = 203 bits (518), Expect = 9e-63
Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ D+++ +S K + ++LVN AG + DF++ +++N+
Sbjct: 63 FACRCDITSEQELSALADFAISKLGKV-DILVNNAGGGGPK-PFDMPMADFRRAYELNVF 120
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F +SQ V E+ + G I+ I S+ + N+ ++YA++KA +++A ++
Sbjct: 121 SFFHLSQLVAPEMEKNGG-GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGE 179
Query: 129 FGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
IR N I PG I T + SV ++++ + P++R G+P+
Sbjct: 180 KNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQ 222
Score = 177 bits (452), Expect = 6e-53
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
V E+ + G I+ I S+ + N+ ++YA++KA +++A ++ IR N
Sbjct: 128 LVAPEMEKNGG-GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNG 186
Query: 398 ILPGFIETPMTTCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
I PG I T V ++++ + P +R G+P++I FL S +S+++G ++ V
Sbjct: 187 IAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTV 246
Query: 457 TGGL 460
+GG
Sbjct: 247 SGGG 250
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 204 bits (522), Expect = 3e-63
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 7/172 (4%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDV 232
D++ + + KF +VL+N AG + ++ + + V D
Sbjct: 58 DAAFFAADLATSEACQQLVDEFVAKFGGI-DVLINNAGGLVGRKPLPEIDDTFYDAVMDA 116
Query: 233 NLKGTFLVSQAVCKELVE----TKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTK 287
N++ + ++ L + + ++I+ GSI G G G Y A KA + K
Sbjct: 117 NIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHK 176
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ G+R N++ PG ++T V++ + IP+ RFG E +
Sbjct: 177 NWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEEM 228
Score = 202 bits (516), Expect = 2e-62
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 7/170 (4%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDV 65
D++ + + KF +VL+N AG + ++ + + V D
Sbjct: 58 DAAFFAADLATSEACQQLVDEFVAKFGGI-DVLINNAGGLVGRKPLPEIDDTFYDAVMDA 116
Query: 66 NLKGTFLVSQAVCKELVE----TKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTK 120
N++ + ++ L + + ++I+ GSI G G G Y A KA + K
Sbjct: 117 NIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHK 176
Query: 121 SVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ G+R N++ PG ++T V++ + IP+ RFG E
Sbjct: 177 NWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAE 226
Score = 175 bits (445), Expect = 6e-52
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 341 KELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVIL 399
+ + ++I+ GSI G G G Y A KA + K+ G+R N++
Sbjct: 134 AAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVS 193
Query: 400 PGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDR-SSYITGTLIKVTG 458
PG ++T V++ + IP RFG EE+ F AS S YITG ++ + G
Sbjct: 194 PGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDING 253
Query: 459 GLA 461
G
Sbjct: 254 GQY 256
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 204 bits (521), Expect = 4e-63
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ MDV+ +I A++ E ++LVN A + +++T + ++++F +N+
Sbjct: 57 YAVQMDVTRQDSIDAAIAATVEHAGGL-DILVNNAALFDLAPIVEITRESYEKLFAINVA 115
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GT QA ++++ G IIN+ S G+ G + Y ATKA V + T+S +++
Sbjct: 116 GTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIK 175
Query: 296 FGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPE 337
I N I PG ++ V + K +P R G E
Sbjct: 176 HRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAE 228
Score = 202 bits (516), Expect = 2e-62
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ MDV+ +I A++A E ++LVN A + +++T + ++++F +N+
Sbjct: 57 YAVQMDVTRQDSIDAAIAATVEHAGGL-DILVNNAALFDLAPIVEITRESYEKLFAINVA 115
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GT QA ++++ G IIN+ S G+ G + Y ATKA V + T+S +++
Sbjct: 116 GTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIK 175
Query: 129 FGIRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
I N I PG ++ V + K +P R G E
Sbjct: 176 HRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAE 228
Score = 171 bits (436), Expect = 1e-50
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++++ G IIN+ S G+ G + Y ATKA V + T+S +++ I N
Sbjct: 123 AAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNA 182
Query: 398 ILPGFIETPMTTCV-----------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRS 446
I PG ++ V + K +PF R G E++ + FLAS S
Sbjct: 183 IAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAES 242
Query: 447 SYITGTLIKVTGGL 460
YI V GG
Sbjct: 243 DYIVSQTYNVDGGN 256
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 203 bits (520), Expect = 4e-63
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
DV++ T+ + EK R +VLVN A L ++F + V LK
Sbjct: 52 FHGDVADPLTLKKFVEYAMEKLQRI-DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAP 110
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+ +S+ EL+ K+ G IINI S YA+ K G+ A T ++AM +
Sbjct: 111 YELSRLCRDELI--KNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-D 167
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
+ N I PG+I + IP + G P+
Sbjct: 168 VLVNCIAPGWINVTEQQEFTQEDCAA----IPAGKVGTPK 203
Score = 200 bits (512), Expect = 7e-62
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
DV++ T+ + EK R +VLVN A L ++F + V LK
Sbjct: 52 FHGDVADPLTLKKFVEYAMEKLQRI-DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAP 110
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+ +S+ EL+ K+ G IINI S YA+ K G+ A T ++AM +
Sbjct: 111 YELSRLCRDELI--KNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-D 167
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+ N I PG+I + + IP + G P+
Sbjct: 168 VLVNCIAPGWINVTE----QQEFTQEDCAAIPAGKVGTPK 203
Score = 161 bits (409), Expect = 1e-46
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
K+ G IINI S YA+ K G+ A T ++AM + + N I PG+I
Sbjct: 123 KNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVT 181
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ + IP + G P++I ++ FL +ITG I V GG++
Sbjct: 182 EQ----QEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGGMS 230
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 203 bits (520), Expect = 6e-63
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%)
Query: 169 PEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQ 228
G + L LP D+ + + R +++VN AG+ + T+ D+
Sbjct: 62 VAGIAADLHLPGDLREAAYADGLPGAVAAGLGRL-DIVVNNAGVISRGRITETTDADWSL 120
Query: 229 VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 288
VN++ F + +A + G+I+N+ S G G + Y TKA + + T+
Sbjct: 121 SLGVNVEAPFRICRAAIPLMAAAGG-GAIVNVASCWGLRPGPGHALYCLTKAALASLTQC 179
Query: 289 VAMEMATFGIRCNVILPGFIETPMTTSV-------PDKVKETFTRLIPLKRFGKPE 337
+ M+ A GIR N + P + TPM + PD+ R +PL R +PE
Sbjct: 180 MGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPE 235
Score = 201 bits (513), Expect = 7e-62
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
L LP D+ + A+ R +++VN AG+ + T+ D+ VN+
Sbjct: 68 DLHLPGDLREAAYADGLPGAVAAGLGRL-DIVVNNAGVISRGRITETTDADWSLSLGVNV 126
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
+ F + +A + G+I+N+ S G G + Y TKA + + T+ + M+ A
Sbjct: 127 EAPFRICRAAIPLMAAAGG-GAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHA 185
Query: 128 TFGIRCNVILPGFIETPMITSV-------PDKVKETFTRLIPLKRFGKPE 170
GIR N + P + TPM+ + PD+ R +PL R +PE
Sbjct: 186 PQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPE 235
Score = 174 bits (444), Expect = 1e-51
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A + G+I+N+ S G G + Y TKA + + T+ + M+ A GIR N
Sbjct: 135 AAIPLMAAAGG-GAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINA 193
Query: 398 ILPGFIETPMTTCV-------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYIT 450
+ P + TPM PD+ R +P R +PE+I +V+ FLASD + Y+
Sbjct: 194 VCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLC 253
Query: 451 GTLIKVTGGLA 461
G+L++V GG A
Sbjct: 254 GSLVEVNGGKA 264
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 202 bits (517), Expect = 2e-62
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+D+ + + R +VLVN A I L + ++++V +VNL
Sbjct: 54 FQVDLEDERERVRFVEEAAYALGRV-DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAP 112
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+S +E+ + G+I+N+ S+ G + Y A+K G+ T+S+A+++A
Sbjct: 113 MHLSALAAREMRKVGG-GAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLR 171
Query: 298 IRCNVILPGFIETPMTTSV------PDKVKETFTRLIPLKRFGKPE 337
IR N + PG I T P++ + + L L+R GKPE
Sbjct: 172 IRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPE 217
Score = 201 bits (513), Expect = 5e-62
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+D+ + + R +VLVN A I L + ++++V +VNL
Sbjct: 54 FQVDLEDERERVRFVEEAAYALGRV-DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAP 112
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+S +E+ + G+I+N+ S+ G + Y A+K G+ T+S+A+++A
Sbjct: 113 MHLSALAAREMRKVGG-GAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLR 171
Query: 131 IRCNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
IR N + PG I T + P++ + + L L+R GKPE
Sbjct: 172 IRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPE 217
Score = 175 bits (447), Expect = 3e-52
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+E+ + G+I+N+ S+ G + Y A+K G+ T+S+A+++A IR N
Sbjct: 118 LAAREMRKVGG-GAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNA 176
Query: 398 ILPGFIETPMTTCV------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITG 451
+ PG I T P++ + + L +R GKPEE+ E + FLAS+++S+ITG
Sbjct: 177 VAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITG 236
Query: 452 TLIKVTGGL 460
++ V GG+
Sbjct: 237 AILPVDGGM 245
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 202 bits (516), Expect = 2e-62
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLKGTFL 239
+ + + + + + +VLV+ + K +D++ + F
Sbjct: 52 KPMSEQEPAELIEAVTSAYGQV-DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 110
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
+ AV ++ + KS G II I S S Y + +AG +++ E+ + I
Sbjct: 111 LVNAVASQMKKRKS-GHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIP 169
Query: 300 CNVILPGFIETPMT--------TSVPDKVKETFTRLIPLKRFGKPEAV 339
I P ++ + + + ++ L+R G + +
Sbjct: 170 VFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKEL 217
Score = 199 bits (509), Expect = 2e-61
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLKGTFL 72
+ + + A+ + + +VLV+ + K +D++ + F
Sbjct: 52 KPMSEQEPAELIEAVTSAYGQV-DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 110
Query: 73 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
+ AV ++ + KS G II I S S Y + +AG +++ E+ + I
Sbjct: 111 LVNAVASQMKKRKS-GHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIP 169
Query: 133 CNVILPGFIETPM--------ITSVPDKVKETFTRLIPLKRFGKPE 170
I P ++ + + ++ L+R G +
Sbjct: 170 VFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQK 215
Score = 174 bits (443), Expect = 1e-51
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV ++ + KS G II I S S Y + +AG +++ E+ + I
Sbjct: 114 AVASQMKKRKS-GHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFA 172
Query: 398 ILPGFIETPMT--------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYI 449
I P ++ + + + ++ +R G +E+GE++ FLAS Y+
Sbjct: 173 IGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYL 232
Query: 450 TGTLIKVTGGLA 461
TG + + GG
Sbjct: 233 TGQVFWLAGGFP 244
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 201 bits (515), Expect = 4e-62
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 3/164 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ +D++ + E F +VLVN AGI+ + + F VNL+
Sbjct: 73 HTVAIDLAEPDAPAELARRAAEAFGGL-DVLVNNAGISHPQPVVDTDPQLFDATIAVNLR 131
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
L++ AV K +V G+II + S Y +KAG+ TK +A E+
Sbjct: 132 APALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGP 191
Query: 296 FGIRCNVILPGFIETPMTTSV--PDKVKETFTRLIPLKRFGKPE 337
GIR N + P + T M V + IPL RF P
Sbjct: 192 HGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPH 235
Score = 199 bits (509), Expect = 3e-61
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 3/164 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ +D++ + E F +VLVN AGI+ + + F VNL+
Sbjct: 73 HTVAIDLAEPDAPAELARRAAEAFGGL-DVLVNNAGISHPQPVVDTDPQLFDATIAVNLR 131
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
L++ AV K +V G+II + S Y +KAG+ TK +A E+
Sbjct: 132 APALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGP 191
Query: 129 FGIRCNVILPGFIETPMITSV--PDKVKETFTRLIPLKRFGKPE 170
GIR N + P + T M V + IPL RF P
Sbjct: 192 HGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPH 235
Score = 166 bits (424), Expect = 8e-49
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV K +V G+II + S Y +KAG+ TK +A E+ GIR N
Sbjct: 139 AVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRANS 198
Query: 398 ILPGFIETPMTTCV--PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ P + T M V + IP RF P E+ + + +LASD +S I G I
Sbjct: 199 VCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGVDIP 258
Query: 456 VTGGLA 461
V GG
Sbjct: 259 VDGGYT 264
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 200 bits (511), Expect = 1e-61
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI---TRDNWFLKLTEKDFQQVF 230
T +S+ +DVS+ + +F + LVN A I + ++ L + + +++
Sbjct: 59 TAISVAVDVSDPESAKAMADRTLAEFGGI-DYLVNNAAIFGGMKLDFLLTIDPEYYKKFM 117
Query: 231 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 290
VNL G ++AV K++ + G+I+N S + + Y K G+ T+ ++
Sbjct: 118 SVNLDGALWCTRAVYKKMTKRGG-GAIVNQSSTAAWLY---SNYYGLAKVGINGLTQQLS 173
Query: 291 MEMATFGIRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPEAV 339
E+ IR N I PG I+T + P ++ + + +PL R G P+ +
Sbjct: 174 RELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDL 223
Score = 198 bits (505), Expect = 9e-61
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI---TRDNWFLKLTEKDFQQVF 63
T +S+ +DVS+ + +F + LVN A I + ++ L + + +++
Sbjct: 59 TAISVAVDVSDPESAKAMADRTLAEFGGI-DYLVNNAAIFGGMKLDFLLTIDPEYYKKFM 117
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
VNL G ++AV K++ + G+I+N S + + Y K G+ T+ ++
Sbjct: 118 SVNLDGALWCTRAVYKKMTKRGG-GAIVNQSSTAAWLY---SNYYGLAKVGINGLTQQLS 173
Query: 124 MEMATFGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
E+ IR N I PG I+T + P ++ + + +PL R G P+
Sbjct: 174 RELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPD 221
Score = 172 bits (439), Expect = 4e-51
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV K++ + G+I+N S + + Y K G+ T+ ++ E+ IR N
Sbjct: 130 AVYKKMTKRGG-GAIVNQSSTAAWLY---SNYYGLAKVGINGLTQQLSRELGGRNIRINA 185
Query: 398 ILPGFIETPMT-TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
I PG I+T T P ++ + + +P R G P+++ + FL SD +S+ITG + V
Sbjct: 186 IAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNV 245
Query: 457 TGGL 460
GG
Sbjct: 246 DGGQ 249
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 199 bits (509), Expect = 1e-61
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 10/165 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKL---TEKDFQQVFDVNLKGT 237
+ + + +V+ I R L L +E D +Q+F+
Sbjct: 52 IALAEQKPERLVDATLQHGEAI-DTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFP 110
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
L+ Q+ L S+I I S VG+ Y +A A +S A ++ G
Sbjct: 111 ILLLQSAIAPLRAAGG-ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDG 169
Query: 298 IRCNVILPGFIETPMTTSVPD-----KVKETFTRLIPLKRFGKPE 337
I I P F P D +++E R +PL R G+P+
Sbjct: 170 ILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPD 214
Score = 198 bits (505), Expect = 7e-61
Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKL---TEKDFQQVFDVNLKGT 70
+ A + + +V+ I R L L +E D +Q+F+
Sbjct: 52 IALAEQKPERLVDATLQHGEAI-DTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFP 110
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
L+ Q+ L S+I I S VG+ Y +A A +S A ++ G
Sbjct: 111 ILLLQSAIAPLRAAGG-ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDG 169
Query: 131 IRCNVILPGFIETPMITSVPD-----KVKETFTRLIPLKRFGKPE 170
I I P F P D +++E R +PL R G+P+
Sbjct: 170 ILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPD 214
Score = 180 bits (458), Expect = 5e-54
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ L S+I I S VG+ Y +A A +S A ++ GI
Sbjct: 116 SAIAPLRAAGG-ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYA 174
Query: 398 ILPGFIETPMTTCVPD-----KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGT 452
I P F P D +++E R +P R G+P+E+G +I FLAS R++ I G
Sbjct: 175 IGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQ 234
Query: 453 LIKVTGGL 460
TGG
Sbjct: 235 FFAFTGGY 242
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 199 bits (509), Expect = 3e-61
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 14/176 (7%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 233
+ DV + + + ++LVN AG R + F + T++ + + +
Sbjct: 60 RLFASVCDVLDALQVRAFAEACERTLGCA-SILVNNAGQGRVSTFAETTDEAWSEELQLK 118
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
+A +L +I+ + S++ +A +AGV+ +S+A E
Sbjct: 119 FFSVIHPVRAFLPQLESRAD-AAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEF 177
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKET------------FTRLIPLKRFGKPE 337
A G+R N IL G +E+ + +E + IPL R GKP
Sbjct: 178 APKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPI 233
Score = 197 bits (504), Expect = 1e-60
Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 14/176 (7%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
+ DV + + A + ++LVN AG R + F + T++ + + +
Sbjct: 60 RLFASVCDVLDALQVRAFAEACERTLGCA-SILVNNAGQGRVSTFAETTDEAWSEELQLK 118
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
+A +L +I+ + S++ +A +AGV+ +S+A E
Sbjct: 119 FFSVIHPVRAFLPQLESRAD-AAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEF 177
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKET------------FTRLIPLKRFGKPE 170
A G+R N IL G +E+ + +E + IPL R GKP
Sbjct: 178 APKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPI 233
Score = 171 bits (437), Expect = 1e-50
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A +L +I+ + S++ +A +AGV+ +S+A E A G+R N
Sbjct: 128 AFLPQLESRAD-AAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNG 186
Query: 398 ILPGFIETPMTTCVPDKVKET------------FTRLIPFKRFGKPEEIGEVICFLASDR 445
IL G +E+ + +E + IP R GKP E I FLAS
Sbjct: 187 ILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPL 246
Query: 446 SSYITGTLIKVTGGLA 461
S+Y TG+ I V+GGL+
Sbjct: 247 SAYTTGSHIDVSGGLS 262
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 199 bits (509), Expect = 4e-61
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L + DV+ + + + + ++ V AGI L + ++FQ++ D N+
Sbjct: 84 LPIRCDVTQPDQVRGMLDQMTGELGGI-DIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVT 142
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAMEM 293
G FL +QA + +V+ G+II S+ G + N+ Q S+Y +KA V TK++A+E+
Sbjct: 143 GVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL 202
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
A IR N + PG+I T + + D + IPL R G+PE
Sbjct: 203 APHQIRVNSVSPGYIRTELVEPLAD-YHALWEPKIPLGRMGRPE 245
Score = 197 bits (503), Expect = 3e-60
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L + DV+ + + + + ++ V AGI L + ++FQ++ D N+
Sbjct: 84 LPIRCDVTQPDQVRGMLDQMTGELGGI-DIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVT 142
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAMEM 126
G FL +QA + +V+ G+II S+ G + N+ Q S+Y +KA V TK++A+E+
Sbjct: 143 GVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL 202
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
A IR N + PG+I T ++ + D + IPL R G+PE
Sbjct: 203 APHQIRVNSVSPGYIRTELVEPLAD-YHALWEPKIPLGRMGRPE 245
Score = 162 bits (412), Expect = 7e-47
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAMEMATFGIRC 395
A + +V+ G+II S+ G + N+ Q S+Y +KA V TK++A+E+A IR
Sbjct: 150 AAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRV 209
Query: 396 NVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
N + PG+I T + + D + IP R G+PEE+ + +LAS SSY+TG+ I
Sbjct: 210 NSVSPGYIRTELVEPLAD-YHALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIV 268
Query: 456 VTGG 459
+ GG
Sbjct: 269 IDGG 272
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 197 bits (503), Expect = 3e-60
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 5/159 (3%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
V + + + + F + + + AG T D+ L + + + V V+L GTF
Sbjct: 81 QVDSYESCEKLVKDVVADFGQI-DAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHC 139
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEMATFGI 298
++AV E + GS++ S+ G + N Q++Y KAG +S+A E F
Sbjct: 140 AKAVGHHFKERGT-GSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-A 197
Query: 299 RCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
R N I PG+I+T ++ VP + ++ + +IP+ R G +
Sbjct: 198 RVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAK 236
Score = 194 bits (495), Expect = 3e-59
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
V + + + + F + + + AG T D+ L + + + V V+L GTF
Sbjct: 81 QVDSYESCEKLVKDVVADFGQI-DAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHC 139
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEMATFGI 131
++AV E +GS++ S+ G + N Q++Y KAG +S+A E F
Sbjct: 140 AKAVGHHFKERG-TGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-A 197
Query: 132 RCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
R N I PG+I+T + VP + ++ + +IP+ R G +
Sbjct: 198 RVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAK 236
Score = 166 bits (424), Expect = 1e-48
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
AV E + GS++ S+ G + N Q++Y KAG +S+A E F R
Sbjct: 142 AVGHHFKERGT-GSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-ARV 199
Query: 396 NVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
N I PG+I+T ++ VP + ++ + +IP R G +E+ + ASD S+Y TG +
Sbjct: 200 NSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLL 259
Query: 456 VTGG 459
+ GG
Sbjct: 260 IDGG 263
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 196 bits (502), Expect = 3e-60
Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 234
S+ MDV+NT ++ A+ ++ E+ R ++LV CAGI +T+ + + D+NL
Sbjct: 65 SSVVMDVTNTESVQNAVRSVHEQEGRV-DILVACAGICISEVKAEDMTDGQWLKQVDINL 123
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAME 292
G F QAV + ++E K G I+ IGS+ G + N Q+ Y A+KAGV + +S+A E
Sbjct: 124 NGMFRSCQAVGRIMLEQKQ-GVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAE 182
Query: 293 MATFGIRCNVILPGFIETPMTTSVPDK--VKETFTRLIPLKRFGKPE 337
A GIR N + P +IET +T +K + + + P+ R G+P+
Sbjct: 183 WAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPD 229
Score = 194 bits (496), Expect = 2e-59
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 67
S+ MDV+NT ++ A+ ++ E+ R ++LV CAGI +T+ + + D+NL
Sbjct: 65 SSVVMDVTNTESVQNAVRSVHEQEGRV-DILVACAGICISEVKAEDMTDGQWLKQVDINL 123
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAME 125
G F QAV + ++E K G I+ IGS+ G + N Q+ Y A+KAGV + +S+A E
Sbjct: 124 NGMFRSCQAVGRIMLEQKQ-GVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAE 182
Query: 126 MATFGIRCNVILPGFIETPMITSVPDK--VKETFTRLIPLKRFGKPE 170
A GIR N + P +IET + +K + + + P+ R G+P+
Sbjct: 183 WAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPD 229
Score = 167 bits (426), Expect = 4e-49
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
AV + ++E K G I+ IGS+ G + N Q+ Y A+KAGV + +S+A E A GIR
Sbjct: 132 AVGRIMLEQKQ-GVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRA 190
Query: 396 NVILPGFIETPMTTCVPDK--VKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
N + P +IET +T +K + + + P R G+P+E+ V+ FLASD +S +TG +
Sbjct: 191 NAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAI 250
Query: 454 IKVTGGL 460
+ V G
Sbjct: 251 VNVDAGF 257
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 198 bits (505), Expect = 3e-60
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 120 KSVAMEMATFGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPEGSSTHLSL 178
K++ E+ G NV+ I S +++K L + P + + +
Sbjct: 32 KAIVKELLELG--SNVV---------IASRKLERLKSAADEL---QANLPPTKQARVIPI 77
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 238
++ N ++ + + + F + N LVN G + ++ K + V + NL GTF
Sbjct: 78 QCNIRNEEEVNNLVKSTLDTFGKI-NFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136
Query: 239 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 298
+ +AV ++ GSI+NI + + G + A +AGV TKS+A+E A GI
Sbjct: 137 YMCKAVYSSWMKEHG-GSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGI 194
Query: 299 RCNVILPGFIETPMTTS----VPDKVKETFTRLIPLKRFGKPE 337
R N + PG I + E + IP KR G PE
Sbjct: 195 RINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPE 237
Score = 195 bits (498), Expect = 4e-59
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ + ++ N ++ + + + F + N LVN G + ++ K + V + NL
Sbjct: 75 IPIQCNIRNEEEVNNLVKSTLDTFGKI-NFLVNNGGGQFLSPAEHISSKGWHAVLETNLT 133
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF + +AV ++ GSI+NI + + G + A +AGV TKS+A+E A
Sbjct: 134 GTFYMCKAVYSSWMKEHG-GSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEWAC 191
Query: 129 FGIRCNVILPGFIETPM----ITSVPDKVKETFTRLIPLKRFGKPE 170
GIR N + PG I + S E + IP KR G PE
Sbjct: 192 SGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPE 237
Score = 162 bits (413), Expect = 9e-47
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV ++ GSI+NI + + G + A +AGV TKS+A+E A GIR N
Sbjct: 141 AVYSSWMKEHG-GSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINC 198
Query: 398 ILPGFIETPMTTC----VPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
+ PG I + E + IP KR G PEE+ V+CFL S +S+ITG
Sbjct: 199 VAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQS 258
Query: 454 IKVTGG 459
+ V GG
Sbjct: 259 VDVDGG 264
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 196 bits (501), Expect = 5e-60
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DVS+ + + +T +E F +VLVN AGI + + F +V VNLKGTF
Sbjct: 85 DVSDPAAVRRLFATAEEAFGGV-DVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNT 143
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+ + L + G IIN+ + + + YAA KAGVEA T ++ E+ I
Sbjct: 144 LREAAQRL---RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 301 NVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPE 337
N + PG T + D+V++ F +L PL+R G P+
Sbjct: 201 NAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQ 238
Score = 195 bits (498), Expect = 1e-59
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DVS+ + + + +E F +VLVN AGI + + F +V VNLKGTF
Sbjct: 85 DVSDPAAVRRLFATAEEAFGGV-DVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNT 143
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+ + L + G IIN+ + + + YAA KAGVEA T ++ E+ I
Sbjct: 144 LREAAQRL---RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 134 NVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
N + PG T + D+V++ F +L PL+R G P+
Sbjct: 201 NAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQ 238
Score = 167 bits (425), Expect = 7e-49
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IIN+ + + + YAA KAGVEA T ++ E+ I N + PG T +
Sbjct: 154 GGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLF 213
Query: 409 TCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
D+V++ F +L P +R G P++I + FLA +++ G +++ GG+
Sbjct: 214 LEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGGI 266
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 194 bits (496), Expect = 3e-59
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
D+ + + M T+ F N+LVN AG+ TEKD+ + N +
Sbjct: 73 EGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFE 132
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+ +SQ L +++ G++I + SI G S Y+A+K + TKS+A E A
Sbjct: 133 AAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK 191
Query: 296 FGIRCNVILPGFIETPMTTSV------PDKVKETFTRLIPLKRFGKPE 337
IR N + PG I TP+ + + + F P+ R GKP+
Sbjct: 192 DNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQ 239
Score = 191 bits (487), Expect = 6e-58
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
D+ + + M + F N+LVN AG+ TEKD+ + N +
Sbjct: 73 EGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFE 132
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+ +SQ L +++ G++I + SI G S Y+A+K + TKS+A E A
Sbjct: 133 AAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK 191
Query: 129 FGIRCNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
IR N + PG I TP++ + + + F P+ R GKP+
Sbjct: 192 DNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQ 239
Score = 158 bits (401), Expect = 3e-45
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
L +++ G++I + SI G S Y+A+K + TKS+A E A IR N
Sbjct: 140 IAYPLLKASQN-GNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNS 198
Query: 398 ILPGFIETPMTTCV------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITG 451
+ PG I TP+ + + F P R GKP+E+ +I FL +SYITG
Sbjct: 199 VAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITG 258
Query: 452 TLIKVTGGL 460
+I GG
Sbjct: 259 QIIWADGGF 267
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 192 bits (491), Expect = 9e-59
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+DV+ ++ +E+F + LVN AGI+ + + + F++V ++NL G
Sbjct: 56 QHLDVTIEEDWQRVVAYAREEFGSV-DGLVNNAGISTGMFLETESVERFRKVVEINLTGV 114
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
F+ + V + + GSI+NI S G MG S+Y A+K GV +K A+E+ T
Sbjct: 115 FIGMKTVIPAMKDAGG-GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDR 173
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFG-KPEAV 339
IR N + PG TPMT + E P+ R G +P +
Sbjct: 174 IRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEI 216
Score = 191 bits (488), Expect = 2e-58
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+DV+ ++ +E+F + LVN AGI+ + + + F++V ++NL G
Sbjct: 56 QHLDVTIEEDWQRVVAYAREEFGSV-DGLVNNAGISTGMFLETESVERFRKVVEINLTGV 114
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F+ + V + + GSI+NI S G MG S+Y A+K GV +K A+E+ T
Sbjct: 115 FIGMKTVIPAMKDAGG-GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDR 173
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFG-KPE 170
IR N + PG TPM + E P+ R G +P
Sbjct: 174 IRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPG 214
Score = 169 bits (432), Expect = 4e-50
Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
GSI+NI S G MG S+Y A+K GV +K A+E+ T IR N + PG TPMT
Sbjct: 130 GGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT 189
Query: 409 TCVPDKVKETFTRLIPFKRFG-KPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+ E P R G +P EI + L SD SSY+TG + V GG
Sbjct: 190 AETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 192 bits (490), Expect = 1e-58
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ D+S+ S M+T+ F N+LVN AGI T +D+ + +N +
Sbjct: 61 EASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFE 120
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+ +S L ++ G+++ I S+ G + ++ Y ATK ++ T+ +A E A
Sbjct: 121 AAYHLSVLAHPFLKASER-GNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAK 179
Query: 296 FGIRCNVILPGFIETPMTTSVPD-----KVKETFTRLIPLKRFGKPE 337
IR N + PG I T + + L+R G+P+
Sbjct: 180 DNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPK 226
Score = 188 bits (481), Expect = 4e-57
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ D+S+ S M+ + F N+LVN AGI T +D+ + +N +
Sbjct: 61 EASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFE 120
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+ +S L ++ G+++ I S+ G + ++ Y ATK ++ T+ +A E A
Sbjct: 121 AAYHLSVLAHPFLKASER-GNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAK 179
Query: 129 FGIRCNVILPGFIETPMITSVPD-----KVKETFTRLIPLKRFGKPE 170
IR N + PG I T ++ + L+R G+P+
Sbjct: 180 DNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPK 226
Score = 154 bits (391), Expect = 5e-44
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
L ++ G+++ I S+ G + ++ Y ATK ++ T+ +A E A IR N
Sbjct: 128 LAHPFLKASER-GNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNG 186
Query: 398 ILPGFIETPMTTCVPD-----KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGT 452
+ PG I T + + +R G+P+E+ ++ FL +SY+TG
Sbjct: 187 VGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQ 246
Query: 453 LIKVTGGL 460
+I V GGL
Sbjct: 247 IIYVDGGL 254
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 192 bits (491), Expect = 2e-58
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
DV++ I ++ I+ + ++LVN AGI R +++T F+QV D++L
Sbjct: 86 HGYVCDVTDEDGIQAMVAQIESEVGII-DILVNNAGIIRRVPMIEMTAAQFRQVIDIDLN 144
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F+VS+AV +++ K G IINI S++ ++G S YAA K G++ TK++A E
Sbjct: 145 APFIVSKAVIPSMIK-KGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGE 203
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRL--------IPLKRFGKPE 337
I+CN I PG+I TP T + + K+ P R+G+ E
Sbjct: 204 ANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAE 253
Score = 188 bits (480), Expect = 1e-56
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
DV++ I ++ I+ + ++LVN AGI R +++T F+QV D++L
Sbjct: 86 HGYVCDVTDEDGIQAMVAQIESEVGII-DILVNNAGIIRRVPMIEMTAAQFRQVIDIDLN 144
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F+VS+AV +++ K G IINI S++ ++G S YAA K G++ TK++A E
Sbjct: 145 APFIVSKAVIPSMIK-KGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGE 203
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRL--------IPLKRFGKPE 170
I+CN I PG+I TP + + K+ P R+G+ E
Sbjct: 204 ANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAE 253
Score = 154 bits (392), Expect = 9e-44
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV +++ K G IINI S++ ++G S YAA K G++ TK++A E I+CN
Sbjct: 152 AVIPSMIK-KGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNG 210
Query: 398 ILPGFIETPMTTCVPDKVKETFTRL--------IPFKRFGKPEEIGEVICFLASDRSSYI 449
I PG+I TP T + + K+ P R+G+ E++ FLASD S+++
Sbjct: 211 IGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAEDLMGPAVFLASDASNFV 270
Query: 450 TGTLIKVTGG 459
G ++ V GG
Sbjct: 271 NGHILYVDGG 280
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 191 bits (488), Expect = 3e-58
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D+SN ++ +++F + ++ +N G ++ +E +F + +N K +
Sbjct: 71 DLSNEEEVAKLFDFAEKEFGKV-DIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFF 129
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+ K + +G II I + + S YA KA VE +T++ + E+ I
Sbjct: 130 IKQAAKHMNP---NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISV 186
Query: 301 NVILPGFIETPMTTSVPDKVK-ETFTRLIPLKRFGKPE 337
N I PG ++T K + K E
Sbjct: 187 NAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIE 224
Score = 190 bits (485), Expect = 1e-57
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D+SN ++ +++F + ++ +N G ++ +E +F + +N K +
Sbjct: 71 DLSNEEEVAKLFDFAEKEFGKV-DIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFF 129
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+ K + +G II I + + S YA KA VE +T++ + E+ I
Sbjct: 130 IKQAAKHMNP---NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISV 186
Query: 134 NVILPGFIETPMITSVPDKVK-ETFTRLIPLKRFGKPE 170
N I PG ++T K + K E
Sbjct: 187 NAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIE 224
Score = 160 bits (407), Expect = 3e-46
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+G II I + + S YA KA VE +T++ + E+ I N I PG ++T
Sbjct: 140 NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFF 199
Query: 409 TCVPDKVK-ETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLAT 462
K + K E+I +I FL +D +I G I GG T
Sbjct: 200 YGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTIFANGGYTT 253
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 190 bits (486), Expect = 4e-58
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 177 SLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 236
+ +D+ + A+ ++ P ++LVN A + FL++T++ F + F+VNL+
Sbjct: 56 PVCVDLGDWEATERALGSVG-----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRA 110
Query: 237 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 296
VSQ V + L+ G+I+N+ S Q S Y +TK ++ TK +A+E+
Sbjct: 111 VIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPH 170
Query: 297 GIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
IR N + P + T M + +T IPL +F + E
Sbjct: 171 KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVE 213
Score = 188 bits (480), Expect = 3e-57
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 10 SLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 69
+ +D+ + A+ ++ P ++LVN A + FL++T++ F + F+VNL+
Sbjct: 56 PVCVDLGDWEATERALGSVG-----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRA 110
Query: 70 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 129
VSQ V + L+ G+I+N+ S Q S Y +TK ++ TK +A+E+
Sbjct: 111 VIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPH 170
Query: 130 GIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
IR N + P + T M + +T IPL +F + E
Sbjct: 171 KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVE 213
Score = 161 bits (410), Expect = 6e-47
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
V + L+ G+I+N+ S Q S Y +TK ++ TK +A+E+ IR N
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ P + T M +T IP +F + E + I FL SDRS TG+ +
Sbjct: 177 VNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLP 236
Query: 456 VTGGL 460
V GG
Sbjct: 237 VEGGF 241
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 190 bits (485), Expect = 5e-58
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D++ I+ + IK + + AGI + + ++V D+N+ +
Sbjct: 52 DLTKQQDITNVLDIIK--NVSF-DGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+ + L K SI+ GS + Y +K + TKS+A+++A + IR
Sbjct: 109 IKGLENNL---KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRV 165
Query: 301 NVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPE 337
N + PG ++T + ++ D+ ++ + PL R +P+
Sbjct: 166 NTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQ 213
Score = 189 bits (482), Expect = 2e-57
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D++ I+ + IK + + AGI + + ++V D+N+ +
Sbjct: 52 DLTKQQDITNVLDIIK--NVSF-DGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+ + L K SI+ GS + Y +K + TKS+A+++A + IR
Sbjct: 109 IKGLENNL---KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRV 165
Query: 134 NVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
N + PG ++T + ++ D+ ++ + PL R +P+
Sbjct: 166 NTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQ 213
Score = 167 bits (425), Expect = 3e-49
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
K SI+ GS + Y +K + TKS+A+++A + IR N + PG ++T
Sbjct: 117 KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTD 176
Query: 407 MT-----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ D+ ++ + P R +P+EI E++ FL SD+S ++TG LI
Sbjct: 177 LYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIP 236
Query: 456 VTGGL 460
+ GG
Sbjct: 237 IDGGY 241
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 190 bits (485), Expect = 8e-58
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+L D+++ + I+ + + ++L AG++ F +++E + + F VN K
Sbjct: 57 HALRSDIADLNEIAVLGAAAGQTLGAI-DLLHINAGVSELEPFDQVSEASYDRQFAVNTK 115
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G F Q + + + GSI+ S+ + G+ G S Y+A+KA + +F +A E+
Sbjct: 116 GAFFTVQRLTPLI---REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLP 172
Query: 296 FGIRCNVILPGFIETPM------TTSVPDKVKETFTRLIPLKRFGKPE 337
GIR N + PGFI+TP T + + K + P+KR G +
Sbjct: 173 RGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTAD 220
Score = 190 bits (484), Expect = 1e-57
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+L D+++ + I+ +A + ++L AG++ F +++E + + F VN K
Sbjct: 57 HALRSDIADLNEIAVLGAAAGQTLGAI-DLLHINAGVSELEPFDQVSEASYDRQFAVNTK 115
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G F Q + + + GSI+ S+ + G+ G S Y+A+KA + +F +A E+
Sbjct: 116 GAFFTVQRLTPLI---REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLP 172
Query: 129 FGIRCNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
GIR N + PGFI+TP + K + P+KR G +
Sbjct: 173 RGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTAD 220
Score = 164 bits (418), Expect = 4e-48
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+ GSI+ S+ + G+ G S Y+A+KA + +F +A E+ GIR N + PGFI+TP
Sbjct: 129 REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTP 188
Query: 407 M------TTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
T + K + P KR G +E+ + FLA + +++ TG + V GGL
Sbjct: 189 TKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAFE-ATFTTGAKLAVDGGL 247
Query: 461 A 461
Sbjct: 248 G 248
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 189 bits (483), Expect = 9e-58
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 177 SLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 236
+ +D+ + A+ I P ++LVN A + FL++T++ F + F VNL+
Sbjct: 56 PVCVDLGDWDATEKALGGIG-----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRS 110
Query: 237 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 296
F VSQ V ++++ GSI+N+ S+V + Y++TK + TK++AME+
Sbjct: 111 VFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPH 170
Query: 297 GIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
IR N + P + T M V + PL++F + E
Sbjct: 171 KIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVE 213
Score = 187 bits (477), Expect = 9e-57
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 10 SLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 69
+ +D+ + A+ I P ++LVN A + FL++T++ F + F VNL+
Sbjct: 56 PVCVDLGDWDATEKALGGIG-----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRS 110
Query: 70 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 129
F VSQ V ++++ GSI+N+ S+V + Y++TK + TK++AME+
Sbjct: 111 VFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPH 170
Query: 130 GIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
IR N + P + T M V + PL++F + E
Sbjct: 171 KIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVE 213
Score = 159 bits (406), Expect = 2e-46
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
V ++++ GSI+N+ S+V + Y++TK + TK++AME+ IR N
Sbjct: 117 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 176
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ P + T M V + P ++F + E++ I FL SDRS+ +G I
Sbjct: 177 VNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGIL 236
Query: 456 VTGG-LAT 462
V G LA+
Sbjct: 237 VDAGYLAS 244
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 191 bits (488), Expect = 1e-57
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ DV + + +S + + P N+++N A + +L+ ++ + D+ L
Sbjct: 79 HAIQCDVRDPDMVQNTVSELIKVAGHP-NIVINNAAGNFISPTERLSPNAWKTITDIVLN 137
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GT V+ + K+L++ + + ++I +I + G+ A+ KAGVEA +KS+A E
Sbjct: 138 GTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGK 197
Query: 296 FGIRCNVILPGFIETPMTTSV---PDKVKETFTRLIPLKRFGKPE 337
+G+R NVI PG I+T S ++ IP R G E
Sbjct: 198 YGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVE 242
Score = 189 bits (482), Expect = 8e-57
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ DV + + +S + + P N+++N A + +L+ ++ + D+ L
Sbjct: 79 HAIQCDVRDPDMVQNTVSELIKVAGHP-NIVINNAAGNFISPTERLSPNAWKTITDIVLN 137
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GT V+ + K+L++ + + ++I +I + G+ A+ KAGVEA +KS+A E
Sbjct: 138 GTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGK 197
Query: 129 FGIRCNVILPGFIETPMITSV---PDKVKETFTRLIPLKRFGKPE 170
+G+R NVI PG I+T S ++ IP R G E
Sbjct: 198 YGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVE 242
Score = 158 bits (403), Expect = 3e-45
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ K+L++ + + ++I +I + G+ A+ KAGVEA +KS+A E +G+R NV
Sbjct: 145 EIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNV 204
Query: 398 ILPGFIETPMTT---CVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
I PG I+T ++ IP R G EE+ + FL SD +S+I G +I
Sbjct: 205 IQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVI 264
Query: 455 KVTGG 459
K GG
Sbjct: 265 KFDGG 269
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 189 bits (482), Expect = 1e-57
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ LP D+ + E +VLV+ A + L+L+ +++++V ++L
Sbjct: 46 VPLPTDLEKDD-PKGLVKRALEALGGL-HVLVHAAAVNVRKPALELSYEEWRRVLYLHLD 103
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQM--GNMGQSNYAATKAGVEAFTKSVAMEM 293
FL++QA + E G ++ IGS+ G + Y K + T+++A E
Sbjct: 104 VAFLLAQAAAPHMAEAGW-GRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEW 162
Query: 294 ATFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
A GIR N++ PG++ET T + ++ E T IP+ R+ +PE
Sbjct: 163 ARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPE 208
Score = 186 bits (474), Expect = 2e-56
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ LP D+ + E +VLV+ A + L+L+ +++++V ++L
Sbjct: 46 VPLPTDLEKDD-PKGLVKRALEALGGL-HVLVHAAAVNVRKPALELSYEEWRRVLYLHLD 103
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQM--GNMGQSNYAATKAGVEAFTKSVAMEM 126
FL++QA + E G ++ IGS+ G + Y K + T+++A E
Sbjct: 104 VAFLLAQAAAPHMAEAGW-GRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEW 162
Query: 127 ATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
A GIR N++ PG++ET + ++ E T IP+ R+ +PE
Sbjct: 163 ARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPE 208
Score = 156 bits (397), Expect = 4e-45
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQM--GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
A + E G ++ IGS+ G + Y K + T+++A E A GIR
Sbjct: 111 AAAPHMAEAGW-GRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRV 169
Query: 396 NVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
N++ PG++ET T + ++ E T IP R+ +PEEI V L D + Y+TG
Sbjct: 170 NLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQA 229
Query: 454 IKVTGG 459
+ V GG
Sbjct: 230 VAVDGG 235
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 190 bits (484), Expect = 1e-57
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
G + + + DV+N + ++ I +++ +VLVN AGI ++ +++++
Sbjct: 43 PGEAKYDHIECDVTNPDQVKASIDHIFKEYGSI-SVLVNNAGIESYGKIESMSMGEWRRI 101
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
DVNL G + S+ ++ ++ SI+NI S+ + S Y +K V TKS+
Sbjct: 102 IDVNLFGYYYASKFAIPYMIRSRD-PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSI 160
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPD-----------KVKETFTRLIPLKRFGKPE 337
A++ A +RCN + P I+TP+ + K + P++R GKP+
Sbjct: 161 ALDYAP-LLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQ 218
Score = 187 bits (478), Expect = 1e-56
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV+N + ++ I +++ +VLVN AGI ++ +++++ DVNL G +
Sbjct: 54 DVTNPDQVKASIDHIFKEYGSI-SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYA 112
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
S+ ++ ++ SI+NI S+ + S Y +K V TKS+A++ A +RC
Sbjct: 113 SKFAIPYMIRSRD-PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLRC 170
Query: 134 NVILPGFIETPMITSVPD-----------KVKETFTRLIPLKRFGKPE 170
N + P I+TP++ + K + P++R GKP+
Sbjct: 171 NAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQ 218
Score = 163 bits (415), Expect = 2e-47
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
++ ++ SI+NI S+ + S Y +K V TKS+A++ A +RCN
Sbjct: 115 FAIPYMIRSRD-PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLRCNA 172
Query: 398 ILPGFIETPMTTCVPD-----------KVKETFTRLIPFKRFGKPEEIGEVICFLASDRS 446
+ P I+TP+ + K + P +R GKP+E+ + FLAS +
Sbjct: 173 VCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREA 232
Query: 447 SYITGTLIKVTGGL 460
S+ITGT + V GGL
Sbjct: 233 SFITGTCLYVDGGL 246
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 188 bits (480), Expect = 3e-57
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV+ I + R +VL N AG L EKD+ ++N++ +L+
Sbjct: 58 DVTKKKQIDQFA----NEVERL-DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
+A +++ KS G+IIN+ S+ + G + + Y+ TKA V TKSVA + GIR
Sbjct: 113 IKAFLPKMLAQKS-GNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIR 171
Query: 300 CNVILPGFIETPMTTSV------PDKVKETFTRLIPLKRFGKPE 337
CN + PG ++TP P++ + F + RF E
Sbjct: 172 CNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAE 215
Score = 187 bits (477), Expect = 8e-57
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV+ I + R +VL N AG L EKD+ ++N++ +L+
Sbjct: 58 DVTKKKQIDQFA----NEVERL-DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
+A +++ KS G+IIN+ S+ + G + + Y+ TKA V TKSVA + GIR
Sbjct: 113 IKAFLPKMLAQKS-GNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIR 171
Query: 133 CNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
CN + PG ++TP + P++ + F + RF E
Sbjct: 172 CNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAE 215
Score = 164 bits (419), Expect = 3e-48
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
A +++ KS G+IIN+ S+ + G + + Y+ TKA V TKSVA + GIRCN
Sbjct: 115 AFLPKMLAQKS-GNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCN 173
Query: 397 VILPGFIETPMT------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYIT 450
+ PG ++TP P++ + F + RF EEI + +LASD S+Y+T
Sbjct: 174 CVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVT 233
Query: 451 GTLIKVTGGL 460
G + + GG
Sbjct: 234 GNPVIIDGGW 243
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 189 bits (482), Expect = 4e-57
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ +DVS+ I + F + LV AG+ + T +DF +V +NL+
Sbjct: 78 AACRVDVSDEQQIIAMVDACVAAFGGV-DKLVANAGVVHLASLIDTTVEDFDRVIAINLR 136
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G +L ++ ++E G+I+N+ S+ GQ+ G Y +KAG+ ++ A E+ +
Sbjct: 137 GAWLCTKHAAPRMIERGG-GAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRS 195
Query: 296 FGIRCNVILPGFIETPMTTSVPDKV-------KETFTRLIPLKRFGKPE 337
GIR N +LP F++TPM + R PE
Sbjct: 196 SGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPE 244
Score = 188 bits (480), Expect = 7e-57
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 9/169 (5%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +DVS+ I + A F + LV AG+ + T +DF +V +NL+
Sbjct: 78 AACRVDVSDEQQIIAMVDACVAAFGGV-DKLVANAGVVHLASLIDTTVEDFDRVIAINLR 136
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G +L ++ ++E G+I+N+ S+ GQ+ G Y +KAG+ ++ A E+ +
Sbjct: 137 GAWLCTKHAAPRMIERGG-GAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRS 195
Query: 129 FGIRCNVILPGFIETPMITSVPDKV-------KETFTRLIPLKRFGKPE 170
GIR N +LP F++TPM + R PE
Sbjct: 196 SGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPE 244
Score = 166 bits (422), Expect = 2e-48
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G+I+N+ S+ GQ+ G Y +KAG+ ++ A E+ + GIR N +LP F++TPM
Sbjct: 154 GGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ 213
Query: 409 TCVPDKV-------KETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
R PEE+ ++ FL SD +S ITGT GG
Sbjct: 214 QTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGT 272
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 188 bits (480), Expect = 5e-57
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 234
S DV++ + + ++ F + + L N AG DF +V +N+
Sbjct: 59 RSYVCDVTSEEAVIGTVDSVVRDFGKI-DFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 117
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
G F V +AV ++++ G I+N S+ G G + Y +K + A T++ A+++A
Sbjct: 118 TGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLA 176
Query: 295 TFGIRCNVILPGFIETPMTTSV----------------PDKVKETFTRLIPLKRFGKPE 337
+ IR N I PG++ P V + +P++R+G
Sbjct: 177 PYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDIN 235
Score = 187 bits (477), Expect = 1e-56
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 19/179 (10%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 67
S DV++ + + ++ F + + L N AG DF +V +N+
Sbjct: 59 RSYVCDVTSEEAVIGTVDSVVRDFGKI-DFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 117
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
G F V +AV ++++ G I+N S+ G G + Y +K + A T++ A+++A
Sbjct: 118 TGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLA 176
Query: 128 TFGIRCNVILPGFIETPMITSV----------------PDKVKETFTRLIPLKRFGKPE 170
+ IR N I PG++ + P V + +P++R+G
Sbjct: 177 PYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDIN 235
Score = 167 bits (426), Expect = 4e-49
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV ++++ G I+N S+ G G + Y +K + A T++ A+++A + IR N
Sbjct: 126 AVSRQMITQNY-GRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNA 184
Query: 398 ILPGFIETPMTTCV----------------PDKVKETFTRLIPFKRFGKPEEIGEVICFL 441
I PG++ P V + +P +R+G EI V+ FL
Sbjct: 185 ISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFL 244
Query: 442 ASDRSSYITGTLIKVTGG 459
D SS++TG + + GG
Sbjct: 245 LGDDSSFMTGVNLPIAGG 262
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 188 bits (480), Expect = 7e-57
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ +DVS+ + + K+ R +VLVN AG + + E+ + ++ VN+K
Sbjct: 76 FGVRVDVSSAKDAESMVEKTTAKWGRV-DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVK 134
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G FL S+ V + GSIIN S ++ Y A+K + + T+++AM+ A
Sbjct: 135 GIFLCSKYVIPVMRRNGG-GSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAK 193
Query: 296 FGIRCNVILPGFIETPMTTSV------PDKVKETFTRLIPLKRFGKPE 337
GIR N + PG I++P T + P K++ F + R G E
Sbjct: 194 EGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAE 241
Score = 188 bits (479), Expect = 1e-56
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +DVS+ + + K+ R +VLVN AG + + E+ + ++ VN+K
Sbjct: 76 FGVRVDVSSAKDAESMVEKTTAKWGRV-DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVK 134
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G FL S+ V + GSIIN S ++ Y A+K + + T+++AM+ A
Sbjct: 135 GIFLCSKYVIPVMRRNGG-GSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAK 193
Query: 129 FGIRCNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
GIR N + PG I++P T + P K++ F + R G E
Sbjct: 194 EGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAE 241
Score = 165 bits (419), Expect = 6e-48
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
GSIIN S ++ Y A+K + + T+++AM+ A GIR N + PG I++P
Sbjct: 152 GGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYF 211
Query: 409 TCV------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
T + P K++ F R G EEI E + FLASDRS + TG+++ V GG
Sbjct: 212 TKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGS 269
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 188 bits (480), Expect = 7e-57
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L L MDV + A+ ++F R ++L+NCA L+ F+ V D++
Sbjct: 80 LPLSMDVRAPPAVMAAVDQALKEFGRI-DILINCAAGNFLCPAGALSFNAFKTVMDIDTS 138
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GTF VS+ + ++ G I+NI + +G G Q + + KA V+A T+ +A+E
Sbjct: 139 GTFNVSRVLYEKFFRDHG-GVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGP 197
Query: 296 FGIRCNVILPGFIETPMTTSV---PDKVKETFTRLIPLKRFGKPE 337
IR N + PG I P T PL+R G
Sbjct: 198 QNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKT 242
Score = 187 bits (478), Expect = 2e-56
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 5/165 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L L MDV + A+ ++F R ++L+NCA L+ F+ V D++
Sbjct: 80 LPLSMDVRAPPAVMAAVDQALKEFGRI-DILINCAAGNFLCPAGALSFNAFKTVMDIDTS 138
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF VS+ + ++ G I+NI + +G G Q + + KA V+A T+ +A+E
Sbjct: 139 GTFNVSRVLYEKFFRDHG-GVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGP 197
Query: 129 FGIRCNVILPGFIETPMITSV---PDKVKETFTRLIPLKRFGKPE 170
IR N + PG I P T PL+R G
Sbjct: 198 QNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKT 242
Score = 157 bits (399), Expect = 5e-45
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ ++ G I+NI + +G G Q + + KA V+A T+ +A+E IR N
Sbjct: 146 VLYEKFFRDHG-GVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNS 204
Query: 398 ILPGFIETPMTT---CVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+ PG I P T P +R G EI + +LAS +SY+TG ++
Sbjct: 205 LAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVL 264
Query: 455 KVTGG 459
GG
Sbjct: 265 VADGG 269
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 187 bits (478), Expect = 8e-57
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW---FLKLTEKDFQQVFDV 232
L + DV++ ++ A++ E+F +VLVN AGIT ++ + F +V V
Sbjct: 55 LRVRADVADEGDVNAAIAATMEQFGAI-DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAV 113
Query: 233 NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAME 292
N++G FL +AV ++ + G I+NI S+ + G+S Y +K V TKSVA++
Sbjct: 114 NVRGIFLGCRAVLPHMLLQGA-GVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVD 172
Query: 293 MATFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
A GIRCN + PG IETPMT D ++++ IP K G
Sbjct: 173 YAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAA 219
Score = 186 bits (475), Expect = 2e-56
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW---FLKLTEKDFQQVFDV 65
L + DV++ ++ A++A E+F +VLVN AGIT ++ + F +V V
Sbjct: 55 LRVRADVADEGDVNAAIAATMEQFGAI-DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAV 113
Query: 66 NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAME 125
N++G FL +AV ++ + G I+NI S+ + G+S Y +K V TKSVA++
Sbjct: 114 NVRGIFLGCRAVLPHMLLQGA-GVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVD 172
Query: 126 MATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
A GIRCN + PG IETPM D ++++ IP K G
Sbjct: 173 YAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAA 219
Score = 169 bits (430), Expect = 9e-50
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+G I+NI S+ + G+S Y +K V TKSVA++ A GIRCN + PG IETPMT
Sbjct: 134 AGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMT 193
Query: 409 TCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
D ++++ IP K G ++ + + FLA + ++Y+ G + + G
Sbjct: 194 QWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 186 bits (476), Expect = 2e-56
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLKGTFL 239
DVS + + E +SR +VL N AGI +++++ +++V VNL F
Sbjct: 64 DVSKKKDVEEFVRRTFETYSRI-DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY 122
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
S+AV +++ G I+N SI G G + Y K G+ T+S+A GIR
Sbjct: 123 SSRAVIPIMLKQGK-GVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIR 181
Query: 300 CNVILPGFIETPMTTSV----PDKVKETFTRLIPLKRFGKPE 337
+LPG ++T + ++ + R +PE
Sbjct: 182 AVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPE 223
Score = 185 bits (471), Expect = 7e-56
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLKGTFL 72
DVS + + E +SR +VL N AGI +++++ +++V VNL F
Sbjct: 64 DVSKKKDVEEFVRRTFETYSRI-DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY 122
Query: 73 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
S+AV +++ G I+N SI G G + Y K G+ T+S+A GIR
Sbjct: 123 SSRAVIPIMLKQGK-GVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIR 181
Query: 133 CNVILPGFIETPMITSV----PDKVKETFTRLIPLKRFGKPE 170
+LPG ++T + ++ + R +PE
Sbjct: 182 AVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPE 223
Score = 169 bits (431), Expect = 6e-50
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV +++ G I+N SI G G + Y K G+ T+S+A GIR
Sbjct: 126 AVIPIMLKQGK-GVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVA 184
Query: 398 ILPGFIETPMTTCV----PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
+LPG ++T + ++ + R +PE+I VI FLASD +S++ G
Sbjct: 185 VLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDA 244
Query: 454 IKVTGGL 460
+ V GGL
Sbjct: 245 VVVDGGL 251
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 186 bits (476), Expect = 2e-56
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 234
V ++ ++LV+ A + + TE+ + ++ VN+
Sbjct: 66 TGTVCHVGKAEDRERLVAMAVNLHGGV-DILVSNAAVNPFFGNIIDATEEVWDKILHVNV 124
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
K T L+++AV E+ + GS++ + S+ Y +K + TK++A+E+A
Sbjct: 125 KATVLMTKAVVPEMEKRGG-GSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELA 183
Query: 295 TFGIRCNVILPGFIETPMTTSV--PDKVKETFTRLIPLKRFGKPE 337
IR N + PG I+T + + KE + ++R G PE
Sbjct: 184 PRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPE 228
Score = 184 bits (469), Expect = 2e-55
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 5/165 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 67
V ++ ++LV+ A + + TE+ + ++ VN+
Sbjct: 66 TGTVCHVGKAEDRERLVAMAVNLHGGV-DILVSNAAVNPFFGNIIDATEEVWDKILHVNV 124
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
K T L+++AV E+ + GS++ + S+ Y +K + TK++A+E+A
Sbjct: 125 KATVLMTKAVVPEMEKRGG-GSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELA 183
Query: 128 TFGIRCNVILPGFIETPMITSV--PDKVKETFTRLIPLKRFGKPE 170
IR N + PG I+T + KE + ++R G PE
Sbjct: 184 PRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPE 228
Score = 166 bits (424), Expect = 8e-49
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV E+ + GS++ + S+ Y +K + TK++A+E+A IR N
Sbjct: 133 AVVPEMEKRGG-GSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNC 191
Query: 398 ILPGFIETPMTTCV--PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ PG I+T + + KE + +R G PE+ ++ FL S+ +SYITG +
Sbjct: 192 LAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVV 251
Query: 456 VTGGLAT 462
V GG A+
Sbjct: 252 VGGGTAS 258
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 187 bits (476), Expect = 3e-56
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDN-WFLKLTEKDFQQ 228
+ ++ DV + ++ + ++ +F+R ++LVN AG ++T + +
Sbjct: 80 RTGNIVRAVVCDVGDPDQVAALFAAVRAEFARL-DLLVNNAGSNVPPVPLEEVTFEQWNG 138
Query: 229 VFDVNLKGTFLVSQAVCKELVE-TKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 287
+ NL G FL +Q + + T G IIN GSI Q + Y ATK + TK
Sbjct: 139 IVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTK 198
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
S A++ I C I G T MT + V + + + E +
Sbjct: 199 STALDGRMHDIACGQIDIGNAATDMTARMSTGVLQA-NGEVAAEPTIPIEHI 249
Score = 184 bits (470), Expect = 3e-55
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDN-WFLKLTEKDFQQVFDVNL 67
++ DV + ++ +A++ +F+R ++LVN AG ++T + + + NL
Sbjct: 86 RAVVCDVGDPDQVAALFAAVRAEFARL-DLLVNNAGSNVPPVPLEEVTFEQWNGIVAANL 144
Query: 68 KGTFLVSQAVCKELVE-TKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
G FL +Q + + T G IIN GSI Q + Y ATK + TKS A++
Sbjct: 145 TGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDG 204
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I C I G T M + V + + + E
Sbjct: 205 RMHDIACGQIDIGNAATDMTARMSTGVLQA-NGEVAAEPTIPIE 247
Score = 153 bits (390), Expect = 1e-43
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IIN GSI Q + Y ATK + TKS A++ I C I G T MT
Sbjct: 165 GGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMT 224
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLIKVTGG 459
+ V + + + E I E + ++AS S+ + + T
Sbjct: 225 ARMSTGVLQA-NGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTVMATRM 275
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 186 bits (475), Expect = 3e-56
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D + I A+ E ++LVN AGI + T DF +V VN + F+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGL-DILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 241 SQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
++ + L + G II IGS + + G S Y+A+KA + TK +A ++ GI
Sbjct: 148 IRSASRHLGD---GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGIT 204
Query: 300 CNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
N++ PG +T M + D E I +G+P+
Sbjct: 205 VNIVHPGSTDTDMNPADGDHA-EAQRERIATGSYGEPQ 241
Score = 183 bits (468), Expect = 4e-55
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D + I A+ E ++LVN AGI + T DF +V VN + F+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGL-DILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 74 SQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
++ + L + G II IGS + + G S Y+A+KA + TK +A ++ GI
Sbjct: 148 IRSASRHLGD---GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGIT 204
Query: 133 CNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
N++ PG +T M + D E I +G+P+
Sbjct: 205 VNIVHPGSTDTDMNPADGDHA-EAQRERIATGSYGEPQ 241
Score = 162 bits (412), Expect = 6e-47
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 349 SGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G II IGS + + G S Y+A+KA + TK +A ++ GI N++ PG +T M
Sbjct: 158 GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDM 217
Query: 408 TTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
D E I +G+P++I ++ +LA + ++TG + + GG
Sbjct: 218 NPADGDHA-EAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGAN 270
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 186 bits (474), Expect = 3e-56
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDV 232
S D+S++ I+ + + R +VLVN AG+ + ++ + V
Sbjct: 79 EAESHACDLSHSDAIAAFATGVLAAHGRC-DVLVNNAGVGWFGGPLHTMKPAEWDALIAV 137
Query: 233 NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAME 292
NLK +L+ +A ++ K G IINI S+ G+ + Y A+K G+ S A E
Sbjct: 138 NLKAPYLLLRAFAPAMIAAKR-GHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEE 196
Query: 293 MATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+ +R +++ PG + T + K L +P+ +
Sbjct: 197 LRQHQVRVSLVAPGSVRTEFGVGLSAKKS-------ALGA-IEPDDI 235
Score = 182 bits (465), Expect = 8e-55
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDV 65
S D+S++ I+ + + R +VLVN AG+ + ++ + V
Sbjct: 79 EAESHACDLSHSDAIAAFATGVLAAHGRC-DVLVNNAGVGWFGGPLHTMKPAEWDALIAV 137
Query: 66 NLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAME 125
NLK +L+ +A ++ K G IINI S+ G+ + Y A+K G+ S A E
Sbjct: 138 NLKAPYLLLRAFAPAMIAAKR-GHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEE 196
Query: 126 MATFGIRCNVILPGFIETPMITSVPDKVK 154
+ +R +++ PG + T + K
Sbjct: 197 LRQHQVRVSLVAPGSVRTEFGVGLSAKKS 225
Score = 148 bits (376), Expect = 8e-42
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++ K G IINI S+ G+ + Y A+K G+ S A E+ +R ++
Sbjct: 148 AFAPAMIAAKR-GHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSL 206
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+ PG + T + K +P++I +V+ LA+ ++
Sbjct: 207 VAPGSVRTEFGVGLSAKKSA--------LGAIEPDDIADVVALLATQADQSFISEVL 255
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 185 bits (473), Expect = 5e-56
Identities = 60/157 (38%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV+ + A+ T F +VLVN AGI ++Q++ DVNL G FL
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGL-HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLG 119
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+AV K + E GSIINI SI G G + Y ATK V TKS A+E+ GIR
Sbjct: 120 IRAVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRV 178
Query: 301 NVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
N I PG ++TPMT VP+ + + L R +P
Sbjct: 179 NSIHPGLVKTPMTDWVPEDIFQ-----TALGRAAEPV 210
Score = 184 bits (470), Expect = 2e-55
Identities = 58/157 (36%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV+ + A+ F +VLVN AGI ++Q++ DVNL G FL
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGL-HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLG 119
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+AV K + E GSIINI SI G G + Y ATK V TKS A+E+ GIR
Sbjct: 120 IRAVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRV 178
Query: 134 NVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
N I PG ++TPM VP+ + + L R +P
Sbjct: 179 NSIHPGLVKTPMTDWVPEDIFQ-----TALGRAAEPV 210
Score = 162 bits (413), Expect = 3e-47
Identities = 48/112 (42%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
GSIINI SI G G + Y ATK V TKS A+E+ GIR N I PG ++TPMT
Sbjct: 132 RGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT 191
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
VP+ + + R +P E+ ++ +LASD SSY TG V GG
Sbjct: 192 DWVPEDIFQ-----TALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 238
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 185 bits (472), Expect = 6e-56
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ DV++ I A S + + ++L+N AGI ++L +++Q+V D NL
Sbjct: 61 HGVAFDVTDELAIEAAFSKLDAEGIHV-DILINNAGIQYRKPMVELELENWQKVIDTNLT 119
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
FLVS++ K ++ S G IINIGS+ Q + Y A K G++ T S+A E A
Sbjct: 120 SAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQ 179
Query: 296 FGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
F I+ N I PG+I T M T++ + + P +R+G+PE
Sbjct: 180 FNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPE 223
Score = 181 bits (462), Expect = 2e-54
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ DV++ I A S + + ++L+N AGI ++L +++Q+V D NL
Sbjct: 61 HGVAFDVTDELAIEAAFSKLDAEGIHV-DILINNAGIQYRKPMVELELENWQKVIDTNLT 119
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
FLVS++ K ++ S G IINIGS+ Q + Y A K G++ T S+A E A
Sbjct: 120 SAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQ 179
Query: 129 FGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
F I+ N I PG+I T M T++ + + P +R+G+PE
Sbjct: 180 FNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPE 223
Score = 145 bits (369), Expect = 7e-41
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ K ++ S G IINIGS+ Q + Y A K G++ T S+A E A F I+ N
Sbjct: 127 SAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNA 186
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
I PG+I T M T + + + P +R+G+PEE+ FL+S S YI G +I
Sbjct: 187 IGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQIIY 246
Query: 456 VTGG 459
V GG
Sbjct: 247 VDGG 250
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 184 bits (469), Expect = 1e-55
Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 233
+ DV++ ++ A + E + ++LVN AGI R + L+ + ++QV VN
Sbjct: 59 VAARIVADVTDAEAMTAAAAEA-EAVAPV-SILVNSAGIARLHDALETDDATWRQVMAVN 116
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAM 291
+ G F S+A + +V + G+I+N+GS+ G + N Q S+Y A+K V T+++A
Sbjct: 117 VDGMFWASRAFGRAMVARGA-GAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAA 175
Query: 292 EMATFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
E A G+R N + PG++ T MT + + ++ ET+ + P+ R G+P
Sbjct: 176 EWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPS 223
Score = 181 bits (462), Expect = 2e-54
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
+ DV++ ++ A + E + ++LVN AGI R + L+ + ++QV VN
Sbjct: 59 VAARIVADVTDAEAMTAAAAEA-EAVAPV-SILVNSAGIARLHDALETDDATWRQVMAVN 116
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAM 124
+ G F S+A + +V + G+I+N+GS+ G + N Q S+Y A+K V T+++A
Sbjct: 117 VDGMFWASRAFGRAMVARGA-GAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAA 175
Query: 125 EMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
E A G+R N + PG++ T M + + ++ ET+ + P+ R G+P
Sbjct: 176 EWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPS 223
Score = 150 bits (382), Expect = 8e-43
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQ--SNYAATKAGVEAFTKSVAMEMATFGIRC 395
A + +V + G+I+N+GS+ G + N Q S+Y A+K V T+++A E A G+R
Sbjct: 126 AFGRAMVARGA-GAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRV 184
Query: 396 NVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
N + PG++ T MT + + ++ ET+ + P R G+P EI FLAS +SY+TG +
Sbjct: 185 NALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAI 244
Query: 454 IKVTGG 459
+ V GG
Sbjct: 245 LAVDGG 250
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 184 bits (470), Expect = 2e-55
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGIT--RDNWFLKLTEKDFQQVFDVN 233
+ +D++N ++ + + F R +++ N A + D ++T + F VN
Sbjct: 60 VHHVVDLTNEVSVRALIDFTIDTFGRL-DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
+GT L+ + L+ G+I+NI S + YA TKA +E T+ VA +
Sbjct: 119 ARGTMLMCKYAIPRLISAGG-GAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177
Query: 294 ATFGIRCNVILPGFIETPMT-TSVPDKVKETFTRLIPLKRFGKPE 337
G+RCN I PG + TP +P + + F R G+P
Sbjct: 178 GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPH 222
Score = 183 bits (468), Expect = 3e-55
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT--RDNWFLKLTEKDFQQVFDVN 66
+ +D++N ++ + + F R +++ N A + D ++T + F VN
Sbjct: 60 VHHVVDLTNEVSVRALIDFTIDTFGRL-DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
+GT L+ + L+ G+I+NI S + YA TKA +E T+ VA +
Sbjct: 119 ARGTMLMCKYAIPRLISAGG-GAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177
Query: 127 ATFGIRCNVILPGFIETPMI-TSVPDKVKETFTRLIPLKRFGKPE 170
G+RCN I PG + TP + +P + + F R G+P
Sbjct: 178 GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPH 222
Score = 172 bits (438), Expect = 9e-51
Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G+I+NI S + YA TKA +E T+ VA + G+RCN I PG + TP
Sbjct: 138 GGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRL 197
Query: 409 -TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+P + + F R G+P EI E++CFLASDR+++ITG +I GL
Sbjct: 198 EVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGL 250
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 183 bits (468), Expect = 2e-55
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ D+S+ + + + I E++ + LVN AG+ R LTE+DF + NLK
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHI-DCLVNNAGVGRFGALSDLTEEDFDYTMNTNLK 119
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GTF ++QA+ + S G I I S+ S Y +K G +++ +
Sbjct: 120 GTFFLTQALFALMERQHS-GHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARK 178
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+R + PG + TPM V D+++ PE +
Sbjct: 179 CNVRITDVQPGAVYTPMWGKVDDEMQ---------ALMMMPEDI 213
Score = 179 bits (457), Expect = 7e-54
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ D+S+ + + + I E++ + LVN AG+ R LTE+DF + NLK
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHI-DCLVNNAGVGRFGALSDLTEEDFDYTMNTNLK 119
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GTF ++QA+ + S G I I S+ S Y +K G +++ +
Sbjct: 120 GTFFLTQALFALMERQHS-GHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARK 178
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+R + PG + TPM V D+++ PE
Sbjct: 179 CNVRITDVQPGAVYTPMWGKVDDEMQ---------ALMMMPE 211
Score = 140 bits (356), Expect = 4e-39
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A+ + S G I I S+ S Y +K G +++ + +R
Sbjct: 127 ALFALMERQHS-GHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITD 185
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITG-TLIKV 456
+ PG + TPM V D+++ PE+I + S + +++
Sbjct: 186 VQPGAVYTPMWGKVDDEMQ---------ALMMMPEDIAAPVVQAYLQPSRTVVEEIILRP 236
Query: 457 TGG 459
T G
Sbjct: 237 TSG 239
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 184 bits (470), Expect = 2e-55
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTE----KDFQQVFD 231
S+ DV+ +++ ++F + +VLVN AG + F + +
Sbjct: 61 NSVVADVTTEDGQDQIINSTLKQFGKI-DVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLK 119
Query: 232 VNLKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVA 290
+NL+ +++ V LV +K G I+N+ SIV G YA KA ++ +T+S A
Sbjct: 120 LNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTA 177
Query: 291 MEMATFGIRCNVILPGFIETPMTTSV---------PDKVKETFTRLIPLKRFGKPEAV 339
+++A FGIR N + PG +ET T ++ + IP+ GKPE +
Sbjct: 178 IDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHI 235
Score = 182 bits (465), Expect = 2e-54
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTE----KDFQQVFD 64
S+ DV+ +++ ++F + +VLVN AG + F + +
Sbjct: 61 NSVVADVTTEDGQDQIINSTLKQFGKI-DVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLK 119
Query: 65 VNLKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVA 123
+NL+ +++ V LV +K G I+N+ SIV G YA KA ++ +T+S A
Sbjct: 120 LNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTA 177
Query: 124 MEMATFGIRCNVILPGFIETPMITSV---------PDKVKETFTRLIPLKRFGKPE 170
+++A FGIR N + PG +ET ++ + IP+ GKPE
Sbjct: 178 IDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPE 233
Score = 159 bits (404), Expect = 1e-45
Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
V LV +K G I+N+ SIV G YA KA ++ +T+S A+++A FGIR N
Sbjct: 131 KVKPHLVASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVN 188
Query: 397 VILPGFIETPMTTCV---------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDR-S 446
+ PG +ET T + + IP GKPE I +I FLA S
Sbjct: 189 SVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLS 248
Query: 447 SYITGTLIKVTGGLA 461
YI G I GG +
Sbjct: 249 FYILGQSIVADGGTS 263
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 184 bits (469), Expect = 2e-55
Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 15/174 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDVNL 234
LS+ D+++ + ++ + + + R +V++N A + F T + + ++ +
Sbjct: 63 LSVGTDITDDAQVAHLVDETMKAYGRV-DVVINNAFRVPSMKPFANTTFEHMRDAIELTV 121
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
G + Q L E S G+++N+ S+V + Y K+ + A ++++A E+
Sbjct: 122 FGALRLIQGFTPALEE--SKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELG 179
Query: 295 TFGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPE 337
GIR N +LPG+I S + + LKR +
Sbjct: 180 EKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTED 233
Score = 183 bits (467), Expect = 5e-55
Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDVNL 67
LS+ D+++ + ++ + + + R +V++N A + F T + + ++ +
Sbjct: 63 LSVGTDITDDAQVAHLVDETMKAYGRV-DVVINNAFRVPSMKPFANTTFEHMRDAIELTV 121
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
G + Q L E S G+++N+ S+V + Y K+ + A ++++A E+
Sbjct: 122 FGALRLIQGFTPALEE--SKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELG 179
Query: 128 TFGIRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
GIR N +LPG+I + S + + LKR +
Sbjct: 180 EKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTED 233
Score = 166 bits (422), Expect = 2e-48
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+S G+++N+ S+V + Y K+ + A ++++A E+ GIR N +LPG+I
Sbjct: 137 ESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGG 196
Query: 407 MT-----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ + KR +E+ I F+ASD +S ITG +
Sbjct: 197 TLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQALD 256
Query: 456 VTGGL 460
V G
Sbjct: 257 VNCGE 261
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 184 bits (470), Expect = 3e-55
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 234
P D++N + A+ + R + +V+CAG + + ++ + +++ D+N+
Sbjct: 66 RYEPTDITNEDETARAVDAVTAWHGRL-HGVVHCAGGSENIGPITQVDSEAWRRTVDLNV 124
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
GT V + +E+V GS + I SI + Y TK+ V+ + A E+
Sbjct: 125 NGTMYVLKHAAREMVRGGG-GSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELG 183
Query: 295 TFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
+R N I PG I T + ++ + ++ + PL R G+ E
Sbjct: 184 ASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVE 228
Score = 183 bits (466), Expect = 9e-55
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 67
P D++N + A+ A+ R + +V+CAG + + ++ + +++ D+N+
Sbjct: 66 RYEPTDITNEDETARAVDAVTAWHGRL-HGVVHCAGGSENIGPITQVDSEAWRRTVDLNV 124
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
GT V + +E+V GS + I SI + Y TK+ V+ + A E+
Sbjct: 125 NGTMYVLKHAAREMVRGGG-GSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELG 183
Query: 128 TFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
+R N I PG I T ++ ++ + ++ + PL R G+ E
Sbjct: 184 ASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVE 228
Score = 166 bits (423), Expect = 2e-48
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+E+V GS + I SI + Y TK+ V+ + A E+ +R N
Sbjct: 133 HAAREMVRGGG-GSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWVRVNS 191
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
I PG I T + + + ++ + P R G+ E++ + FL SD +S++TG +I
Sbjct: 192 IRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVIN 251
Query: 456 VTGGL 460
V GG
Sbjct: 252 VDGGQ 256
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 184 bits (469), Expect = 3e-55
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV + + + ++ E+F R +V+V AG+ +LT++ + V VNL GT+
Sbjct: 85 DVRDDAALRELVADGMEQFGRL-DVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRT 143
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+A ++E + GSI+ + S G G +Y+A+K G+ A T ++A+E+ +GIR
Sbjct: 144 LRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRV 203
Query: 301 NVILPGFIETPMTTSV---------PDKVKETFTRLIPLKRFGKPEAV 339
N I P +ETPM P V + F + V
Sbjct: 204 NSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEV 251
Score = 183 bits (468), Expect = 5e-55
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV + + + ++ E+F R +V+V AG+ +LT++ + V VNL GT+
Sbjct: 85 DVRDDAALRELVADGMEQFGRL-DVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRT 143
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+A ++E + GSI+ + S G G +Y+A+K G+ A T ++A+E+ +GIR
Sbjct: 144 LRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRV 203
Query: 134 NVILPGFIETPMITSV---------PDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSN 184
N I P +ETPMI P V + F + +V++
Sbjct: 204 NSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTAD----------EVAD 253
Score = 162 bits (413), Expect = 6e-47
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++E + GSI+ + S G G +Y+A+K G+ A T ++A+E+ +GIR N
Sbjct: 146 ATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNS 205
Query: 398 ILPGFIETPMTTCV---------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSY 448
I P +ETPM P V + F +E+ +V+ +LA D S
Sbjct: 206 IHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGT 265
Query: 449 ITGTLIKVTGGL 460
+TGT I V G
Sbjct: 266 LTGTQIPVDKGA 277
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 184 bits (469), Expect = 4e-55
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 181 DVSNTSTISTA----MSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKD----------F 226
D++N++ + + +++ F R +VLVN A ++ +D
Sbjct: 82 DLTNSNVLPASCEEIINSCFRAFGRC-DVLVNNASAFYPTPLVQGDHEDNSNGKTVETQV 140
Query: 227 QQVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQSNYAATKAG 281
++ N FL++ + + T S+ SI+N+ + M S Y K
Sbjct: 141 AELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHA 200
Query: 282 VEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPEAV 339
+ T+S A+E+A +GIR N + PG P+ + ++ K+ + R +PL +R E +
Sbjct: 201 LVGLTQSAALELAPYGIRVNGVAPGVSLLPVA--MGEEEKDKWRRKVPLGRREASAEQI 257
Score = 184 bits (468), Expect = 6e-55
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 14 DVSNTSTISTA----MSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKD----------F 59
D++N++ + + +++ F R +VLVN A ++ +D
Sbjct: 82 DLTNSNVLPASCEEIINSCFRAFGRC-DVLVNNASAFYPTPLVQGDHEDNSNGKTVETQV 140
Query: 60 QQVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQSNYAATKAG 114
++ N FL++ + + T S+ SI+N+ + M S Y K
Sbjct: 141 AELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHA 200
Query: 115 VEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
+ T+S A+E+A +GIR N + PG P+ ++ ++ K+ + R +PL +R E
Sbjct: 201 LVGLTQSAALELAPYGIRVNGVAPGVSLLPV--AMGEEEKDKWRRKVPLGRREASAE 255
Score = 171 bits (435), Expect = 4e-50
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
S+ SI+N+ + M S Y K + T+S A+E+A +GIR N + PG P
Sbjct: 171 SSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLP 230
Query: 407 MTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ + ++ K+ + R +P +R E+I + + FL S + YITG++IKV GGL+
Sbjct: 231 VA--MGEEEKDKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 183 bits (466), Expect = 8e-55
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTFL 239
DV N + I+ S + +F R + LVN AGI +++ + +++ VN+ G+ L
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRL-DGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSIL 142
Query: 240 VSQAVCKELVETKSS--GSIINIGSIVGQMGNMGQ-SNYAATKAGVEAFTKSVAMEMATF 296
+ + + S G+I+N+ S+ +G+ Q +YAA+KA ++ FT +A E+A
Sbjct: 143 CAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAE 202
Query: 297 GIRCNVILPGFIETPMTTS--VPDKVKETFTRLIPLKRFGKPEAV 339
GIR N + PG IET + S +PD+ +E +P++R G PE V
Sbjct: 203 GIRVNAVRPGIIETDLHASGGLPDRARE-MAPSVPMQRAGMPEEV 246
Score = 180 bits (458), Expect = 1e-53
Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTFL 72
DV N + I+ SA+ +F R + LVN AGI +++ + +++ VN+ G+ L
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRL-DGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSIL 142
Query: 73 VSQAVCKELVETKSS--GSIINIGSIVGQMGNMGQ-SNYAATKAGVEAFTKSVAMEMATF 129
+ + + S G+I+N+ S+ +G+ Q +YAA+KA ++ FT +A E+A
Sbjct: 143 CAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAE 202
Query: 130 GIRCNVILPGFIETPMITS--VPDKVKETFTRLIPLKRFGKPE 170
GIR N + PG IET + S +PD+ +E +P++R G PE
Sbjct: 203 GIRVNAVRPGIIETDLHASGGLPDRARE-MAPSVPMQRAGMPE 244
Score = 161 bits (411), Expect = 7e-47
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Query: 350 GSIINIGSIVGQMGNMGQ-SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G+I+N+ S+ +G+ Q +YAA+KA ++ FT +A E+A GIR N + PG IET +
Sbjct: 160 GAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLH 219
Query: 409 TC--VPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
+PD+ +E +P +R G PEE+ + I +L S +SY+TG+++ V+GG
Sbjct: 220 ASGGLPDRARE-MAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 183 bits (466), Expect = 9e-55
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL--KLTEKDFQQVFDVN 233
+ ++S+ ++ +S ++ F +V V AG+T + ++ V+
Sbjct: 86 KAYKCNISDPKSVEETISQQEKDFGTI-DVFVANAGVTWTQGPEIDVDNYDSWNKIISVD 144
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMG--QSNYAATKAGVEAFTKSVAM 291
L G + S + K + GS+I SI G++ N+ Q+ Y KA KS+A+
Sbjct: 145 LNGVYYCSHNIGKIFKKNGK-GSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAI 203
Query: 292 EMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPE 337
E A F R N I PG+I+T +T +K + +L PL R G +
Sbjct: 204 EWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQ 248
Score = 180 bits (460), Expect = 7e-54
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL--KLTEKDFQQVFDVN 66
+ ++S+ ++ +S ++ F +V V AG+T + ++ V+
Sbjct: 86 KAYKCNISDPKSVEETISQQEKDFGTI-DVFVANAGVTWTQGPEIDVDNYDSWNKIISVD 144
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMG--QSNYAATKAGVEAFTKSVAM 124
L G + S + K + GS+I SI G++ N+ Q+ Y KA KS+A+
Sbjct: 145 LNGVYYCSHNIGKIFKKNGK-GSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAI 203
Query: 125 EMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
E A F R N I PG+I+T + +K + +L PL R G +
Sbjct: 204 EWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQ 248
Score = 158 bits (403), Expect = 2e-45
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 349 SGSIINIGSIVGQMGNMG--QSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
GS+I SI G++ N+ Q+ Y KA KS+A+E A F R N I PG+I+T
Sbjct: 164 KGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTD 222
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
+T +K + +L P R G +E+ +LAS+ S++ TG+ + + GG
Sbjct: 223 ITDFASKDMKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 182 bits (464), Expect = 1e-54
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNL 234
L +P DV++ ++ + EKF R +VL N AG + LT ++QV D NL
Sbjct: 77 LCVPTDVTDPDSVRALFTATVEKFGRV-DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNL 135
Query: 235 KGTFLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
G FL +Q + + + G IIN GSI + Y ATK + TKS +++
Sbjct: 136 TGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDG 195
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I C I G +TPM + V + I ++ V
Sbjct: 196 RVHDIACGQIDIGNADTPMAQKMKAGVPQADLS-IKVEPVMDVAHV 240
Score = 181 bits (461), Expect = 4e-54
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNL 67
L +P DV++ ++ +A EKF R +VL N AG + LT ++QV D NL
Sbjct: 77 LCVPTDVTDPDSVRALFTATVEKFGRV-DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNL 135
Query: 68 KGTFLVSQAVCKELVETKS-SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
G FL +Q + + + G IIN GSI + Y ATK + TKS +++
Sbjct: 136 TGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDG 195
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE---GSSTHL-SLPMDV 182
I C I G +TPM + V + I ++ + ++ SLP+D
Sbjct: 196 RVHDIACGQIDIGNADTPMAQKMKAGVPQADLS-IKVEPVMDVAHVASAVVYMASLPLDA 254
Query: 183 S-NTSTIS-TAM 192
+ TI T M
Sbjct: 255 NVQFMTIMATKM 266
Score = 146 bits (371), Expect = 4e-41
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
G IIN GSI + Y ATK + TKS +++ I C I G +TP
Sbjct: 154 PRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTP 213
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLIKVTG 458
M + V + I + + + ++AS + + I T
Sbjct: 214 MAQKMKAGVPQADLS-IKVEPVMDVAHVASAVVYMASLPLDANVQFMTIMATK 265
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 181 bits (463), Expect = 1e-54
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDVNL 234
L++ D++N + + A+S +KF + LV+ AG + ++ E + QV DVNL
Sbjct: 61 LAIKADLTNAAEVEAAISAAADKFGEI-HGLVHVAGGLIARKTIAEMDEAFWHQVLDVNL 119
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEM 293
FL ++ ++ + G+I+ S G+ G G YA +K V FT+ +A E+
Sbjct: 120 TSLFLTAKTALPKMAK---GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEV 176
Query: 294 ATFGIRCNVILPGFIETPMTTSVPD-KVKETFTRLIPLKRFGKPEAV 339
IR N + PG I T + +V+E LKR G E V
Sbjct: 177 GP-KIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDV 222
Score = 180 bits (459), Expect = 5e-54
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAG-ITRDNWFLKLTEKDFQQVFDVNL 67
L++ D++N + + A+SA +KF + LV+ AG + ++ E + QV DVNL
Sbjct: 61 LAIKADLTNAAEVEAAISAAADKFGEI-HGLVHVAGGLIARKTIAEMDEAFWHQVLDVNL 119
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEM 126
FL ++ ++ + G+I+ S G+ G G YA +K V FT+ +A E+
Sbjct: 120 TSLFLTAKTALPKMAK---GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEV 176
Query: 127 ATFGIRCNVILPGFIETPMITSVPD-KVKETFTRLIPLKRFGKPE 170
IR N + PG I T + +V+E LKR G E
Sbjct: 177 GP-KIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSE 220
Score = 163 bits (414), Expect = 3e-47
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 349 SGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G+I+ S G+ G G YA +K V FT+ +A E+ IR N + PG I T
Sbjct: 136 GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-KIRVNAVCPGMISTTF 194
Query: 408 TTCVPD-KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+V+E KR G E++ ++ FLASD ++Y+TG + GG+
Sbjct: 195 HDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVL 249
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 182 bits (465), Expect = 1e-54
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV + + + + ++ ++ ++ + AGI+ ++ + +V NL GTF
Sbjct: 79 DVKDRAALESFVAEAEDTLGGI-DIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNT 137
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
AV +++ G I+ + S++G N Q++Y ++K GV TK A ++ +GI
Sbjct: 138 IAAVAPGMIKRNY-GRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITV 196
Query: 301 NVILPGFIETPMTTSVP---------------DKVKETFTRLIPLKRFGKPEAV 339
N + PG IETPMT + D + + F KPE V
Sbjct: 197 NAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEV 250
Score = 182 bits (464), Expect = 2e-54
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV + + + + ++ ++ ++ + AGI+ ++ + +V NL GTF
Sbjct: 79 DVKDRAALESFVAEAEDTLGGI-DIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNT 137
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
AV +++ G I+ + S++G N Q++Y ++K GV TK A ++ +GI
Sbjct: 138 IAAVAPGMIKRNY-GRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITV 196
Query: 134 NVILPGFIETPMITSVP---------------DKVKETFTRLIPLKRFGKPEGSSTHLSL 178
N + PG IETPM + D + + F KPE
Sbjct: 197 NAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPE-------- 248
Query: 179 PMDVSN 184
+V+
Sbjct: 249 --EVTR 252
Score = 157 bits (399), Expect = 6e-45
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV +++ G I+ + S++G N Q++Y ++K GV TK A ++ +GI N
Sbjct: 140 AVAPGMIKRNY-GRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNA 198
Query: 398 ILPGFIETPMTTCVP---------------DKVKETFTRLIPFKRFGKPEEIGEVICFLA 442
+ PG IETPMT D + + + F KPEE+ + FL
Sbjct: 199 VAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLV 258
Query: 443 SDRSSYITGTLIKVTGGL 460
+ SS+ITGT++ + G
Sbjct: 259 DEASSHITGTVLPIDAGA 276
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 181 bits (462), Expect = 2e-54
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
D S+ + ++ F + LVN AGI + + T +++++ VNL G
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPV-STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGV 117
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT-- 295
F ++ + + SIIN+ SI G +G+ Y A+K V +KS A++ A
Sbjct: 118 FFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKD 177
Query: 296 FGIRCNVILPGFIETPMTTSVPD-KVKETFTRLIPLKRFGKPE 337
+ +R N + PG+I+TP+ +P + + P+ G+P
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPN 220
Score = 181 bits (461), Expect = 3e-54
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
D S+ + A ++ F + LVN AGI + + T +++++ VNL G
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPV-STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGV 117
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT-- 128
F ++ + + SIIN+ SI G +G+ Y A+K V +KS A++ A
Sbjct: 118 FFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKD 177
Query: 129 FGIRCNVILPGFIETPMITSVPD-KVKETFTRLIPLKRFGKPE 170
+ +R N + PG+I+TP++ +P + + P+ G+P
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPN 220
Score = 158 bits (403), Expect = 7e-46
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT--FGIRC 395
+ + SIIN+ SI G +G+ Y A+K V +KS A++ A + +R
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV 182
Query: 396 NVILPGFIETPMTTCVPD-KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
N + PG+I+TP+ +P + + P G+P +I + +LAS+ S + TG+
Sbjct: 183 NTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEF 242
Query: 455 KVTGGL 460
V GG
Sbjct: 243 VVDGGY 248
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 182 bits (463), Expect = 3e-54
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L P D++ S I+ M+ + ++F ++LVN AG+ + + ++ VNL
Sbjct: 79 LHHPADMTKPSEIADMMAMVADRFGGA-DILVNNAGVQFVEKIEDFPVEQWDRIIAVNLS 137
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+F + + + G IINI S G + + +S Y A K G+ TK+VA+E+A
Sbjct: 138 SSFHTIRGAIPPMKKKGW-GRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAE 196
Query: 296 FGIRCNVILPGFIETPMT------------TSVPDKVKETFTRLIPLKRFGKPEAV 339
G+ N I PG++ TP+ + + E + P K+F E V
Sbjct: 197 SGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQV 252
Score = 180 bits (459), Expect = 1e-53
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L P D++ S I+ M+ + ++F ++LVN AG+ + + ++ VNL
Sbjct: 79 LHHPADMTKPSEIADMMAMVADRFGGA-DILVNNAGVQFVEKIEDFPVEQWDRIIAVNLS 137
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+F + + + G IINI S G + + +S Y A K G+ TK+VA+E+A
Sbjct: 138 SSFHTIRGAIPPMKKKGW-GRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAE 196
Query: 129 FGIRCNVILPGFIETPMI------------TSVPDKVKETFTRLIPLKRFGKPE 170
G+ N I PG++ TP++ + + E + P K+F E
Sbjct: 197 SGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVE 250
Score = 158 bits (401), Expect = 3e-45
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI S G + + +S Y A K G+ TK+VA+E+A G+ N I PG++ TP+
Sbjct: 155 WGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLV 214
Query: 409 ------------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+ E + P K+F E++ + +LA D ++ ITGT + +
Sbjct: 215 EKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSM 274
Query: 457 TGG 459
GG
Sbjct: 275 DGG 277
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 181 bits (461), Expect = 3e-54
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L D+S + + + R ++LVN AGI + + + +NL
Sbjct: 58 LYDGADLSKGEAVRGLVDNAVRQMGRI-DILVNNAGIQHTALIEDFPTEKWDAILALNLS 116
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F + A + + G IINI S G + + +S Y A K GV FTK A+E A
Sbjct: 117 AVFHGTAAALPHMKKQGF-GRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAG 175
Query: 296 FGIRCNVILPGFIETPMT------------TSVPDKVKETFTRLIPLKRFGKPEAV 339
GI N I PG++ TP+ +E + P +F PE +
Sbjct: 176 QGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQL 231
Score = 179 bits (456), Expect = 1e-53
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L D+S + + + R ++LVN AGI + + + +NL
Sbjct: 58 LYDGADLSKGEAVRGLVDNAVRQMGRI-DILVNNAGIQHTALIEDFPTEKWDAILALNLS 116
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F + A + + G IINI S G + + +S Y A K GV FTK A+E A
Sbjct: 117 AVFHGTAAALPHMKKQGF-GRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAG 175
Query: 129 FGIRCNVILPGFIETPMI------------TSVPDKVKETFTRLIPLKRFGKPE 170
GI N I PG++ TP++ +E + P +F PE
Sbjct: 176 QGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPE 229
Score = 157 bits (399), Expect = 3e-45
Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI S G + + +S Y A K GV FTK A+E A GI N I PG++ TP+
Sbjct: 134 FGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLV 193
Query: 409 ------------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+E + P +F PE++G FLASD ++ ITGT + V
Sbjct: 194 EKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSV 253
Query: 457 TGG 459
GG
Sbjct: 254 DGG 256
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 180 bits (460), Expect = 3e-54
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEK----DFQQVFDVNL 234
DV+N + + A++ K++F + LVNCAG L + F + VNL
Sbjct: 59 NADVTNEADATAALAFAKQEFG-HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNL 117
Query: 235 KGTFLVSQAVCKELVETK-----SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
GTF + + + + + + G I+N SI G +GQ+ YAA+K GV A T
Sbjct: 118 IGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPA 177
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPE---AVCKELVE 345
A E+A FGIR I PG +TPM +P V++ +P R G+ E A+ K + E
Sbjct: 178 ARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICE 237
Score = 180 bits (458), Expect = 7e-54
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEK----DFQQVFDVNL 67
DV+N + + A++ K++F + LVNCAG L + F + VNL
Sbjct: 59 NADVTNEADATAALAFAKQEFG-HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNL 117
Query: 68 KGTFLVSQAVCKELVETK-----SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 122
GTF + + + + + + G I+N SI G +GQ+ YAA+K GV A T
Sbjct: 118 IGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPA 177
Query: 123 AMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
A E+A FGIR I PG +TPM+ +P V++ +P R G+ E
Sbjct: 178 ARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAE 226
Score = 146 bits (372), Expect = 3e-41
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 342 ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPG 401
E G I+N SI G +GQ+ YAA+K GV A T A E+A FGIR I PG
Sbjct: 135 EPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPG 194
Query: 402 FIETPMTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+TPM +P V++ +PF R G+ EE ++ + ++ + G +I++ G L
Sbjct: 195 IFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICE--NTMLNGEVIRLDGAL 252
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 181 bits (462), Expect = 3e-54
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ D+++ + + +R +VLVN AGI +++ +++V VNL
Sbjct: 82 EAVVADLADLEGAANVAEELAA--TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLD 139
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+++S++ ++ S G I+ I S++ G + YAA+K V T+++A E A
Sbjct: 140 AAWVLSRSFGTAMLAHGS-GRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAG 198
Query: 296 FGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
G+ N + PG++ T T ++ + T IP R+ PE
Sbjct: 199 RGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPE 242
Score = 177 bits (452), Expect = 8e-53
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 5/164 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ D+++ + + +R +VLVN AGI +++ +++V VNL
Sbjct: 82 EAVVADLADLEGAANVAEELAA--TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLD 139
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+++S++ ++ S G I+ I S++ G + YAA+K V T+++A E A
Sbjct: 140 AAWVLSRSFGTAMLAHGS-GRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAG 198
Query: 129 FGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
G+ N + PG++ T ++ + T IP R+ PE
Sbjct: 199 RGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPE 242
Score = 146 bits (370), Expect = 8e-41
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ ++ S G I+ I S++ G + YAA+K V T+++A E A G+ N
Sbjct: 147 SFGTAMLAHGS-GRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNA 205
Query: 398 ILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
+ PG++ T T + + T IP R+ PE++ FLASD +SY+ G ++
Sbjct: 206 LAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLA 265
Query: 456 VTGG-LAT 462
V GG LA+
Sbjct: 266 VDGGWLAS 273
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 181 bits (462), Expect = 3e-54
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D+S S + F + +++ +G+ L++T++ F +VF++N +G F V
Sbjct: 79 DISKPSEVVALFDKAVSHFGGL-DFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 137
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
+Q K + G II SI M G + YA +KA VE F ++ A++ G+
Sbjct: 138 AQQGLKHC---RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVT 194
Query: 300 CNVILPGFIETPMTTSV-------------PDKVKETFTRLIPLKRFGKPE 337
N I PG ++T M +K+ E + PLKR G P
Sbjct: 195 VNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPA 245
Score = 179 bits (456), Expect = 2e-53
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D+S S + F + +++ +G+ L++T++ F +VF++N +G F V
Sbjct: 79 DISKPSEVVALFDKAVSHFGGL-DFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 137
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
+Q K + G II SI M G + YA +KA VE F ++ A++ G+
Sbjct: 138 AQQGLKHC---RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVT 194
Query: 133 CNVILPGFIETPMITSV-------------PDKVKETFTRLIPLKRFGKPE 170
N I PG ++T M +K+ E + PLKR G P
Sbjct: 195 VNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPA 245
Score = 154 bits (392), Expect = 5e-44
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 349 SGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G II SI M G + YA +KA VE F ++ A++ G+ N I PG ++T M
Sbjct: 148 GGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDM 207
Query: 408 TTCV-------------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+K+ E + P KR G P +IG + L + S +I G +I
Sbjct: 208 FDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVI 267
Query: 455 KVTGG 459
K+TGG
Sbjct: 268 KLTGG 272
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 181 bits (461), Expect = 4e-54
Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ DVSN + + +KEKF + + +VN AGI R + + +F+QV +VNL
Sbjct: 74 MAFRCDVSNYEEVKKLLEAVKEKFGKL-DTVVNAAGINRRHPAEEFPLDEFRQVIEVNLF 132
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVG-QMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
GT+ V + L E + SIINIGS+ ++ S YAA+K GV + TK++A E
Sbjct: 133 GTYYVCREAFSLLRE-SDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWG 191
Query: 295 TFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
+GIR NVI PG+ T MT +V + + + IPL R G PE
Sbjct: 192 RYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPE 236
Score = 176 bits (450), Expect = 1e-52
Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ DVSN + + A+KEKF + + +VN AGI R + + +F+QV +VNL
Sbjct: 74 MAFRCDVSNYEEVKKLLEAVKEKFGKL-DTVVNAAGINRRHPAEEFPLDEFRQVIEVNLF 132
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVG-QMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
GT+ V + L E + SIINIGS+ ++ S YAA+K GV + TK++A E
Sbjct: 133 GTYYVCREAFSLLRE-SDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWG 191
Query: 128 TFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
+GIR NVI PG+ T M +V + + + IPL R G PE
Sbjct: 192 RYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPE 236
Score = 143 bits (362), Expect = 1e-39
Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 338 AVCKELVETKSSGSIINIGSIVG-QMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
L E + SIINIGS+ ++ S YAA+K GV + TK++A E +GIR N
Sbjct: 140 EAFSLLRE-SDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVN 198
Query: 397 VILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
VI PG+ T MT V + + + IP R G PE++ V FLAS+ + Y+TG +I
Sbjct: 199 VIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQII 258
Query: 455 KVTGG 459
V GG
Sbjct: 259 FVDGG 263
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 180 bits (460), Expect = 4e-54
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDV 232
L++ D+S + + A+ KF + ++LVN AGI + ++F ++ V
Sbjct: 56 AALAVAADISKEADVDAAVEAALSKFGKV-DILVNNAGIGHKPQNAELVEPEEFDRIVGV 114
Query: 233 NLKGTFLVSQAVCKELVETKS---SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
N++G +L++ + E + I+N+ S + Y ATK V + TK++
Sbjct: 115 NVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKAL 174
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSV----PDKVKETFTRLIPLKRFGKPE 337
A+E+A IR + P ETP+ T+ +++++ F IP+ R KP+
Sbjct: 175 AIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPD 226
Score = 180 bits (458), Expect = 8e-54
Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDV 65
L++ D+S + + A+ A KF + ++LVN AGI + ++F ++ V
Sbjct: 56 AALAVAADISKEADVDAAVEAALSKFGKV-DILVNNAGIGHKPQNAELVEPEEFDRIVGV 114
Query: 66 NLKGTFLVSQAVCKELVETKS---SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 122
N++G +L++ + E + I+N+ S + Y ATK V + TK++
Sbjct: 115 NVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKAL 174
Query: 123 AMEMATFGIRCNVILPGFIETPMITSV----PDKVKETFTRLIPLKRFGKPE 170
A+E+A IR + P ETP++T+ +++++ F IP+ R KP+
Sbjct: 175 AIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPD 226
Score = 162 bits (412), Expect = 4e-47
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 338 AVCKELVETKS---SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 394
+ E + I+N+ S + Y ATK V + TK++A+E+A IR
Sbjct: 125 KLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIR 184
Query: 395 CNVILPGFIETPMTTCV----PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYIT 450
+ P ETP+ T +++++ F IP R KP+++ E FL S ++S IT
Sbjct: 185 VVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMIT 244
Query: 451 GTLIKVTGGL 460
G + V GG
Sbjct: 245 GVALDVDGGR 254
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 181 bits (461), Expect = 4e-54
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 171 GSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQV 229
+ L+ DVS+ + + ++ E+F R + N AGI + N T +F +V
Sbjct: 62 PDAEVLTTVADVSDEAQVEAYVTATTERFGRI-DGFFNNAGIEGKQNPTESFTAAEFDKV 120
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
+NL+G FL + V K + E S G ++N S+ G G QS YAA K GV T++
Sbjct: 121 VSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNS 179
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSV--------PDKVKETFTRLIPLKRFGKPE 337
A+E +GIR N I PG I TPM + P K E F ++ P KR+G+
Sbjct: 180 AVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAP 235
Score = 180 bits (458), Expect = 9e-54
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQV 62
+ L+ DVS+ + + ++A E+F R + N AGI + N T +F +V
Sbjct: 62 PDAEVLTTVADVSDEAQVEAYVTATTERFGRI-DGFFNNAGIEGKQNPTESFTAAEFDKV 120
Query: 63 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 122
+NL+G FL + V K + E S G ++N S+ G G QS YAA K GV T++
Sbjct: 121 VSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNS 179
Query: 123 AMEMATFGIRCNVILPGFIETPMITSV--------PDKVKETFTRLIPLKRFGKPE 170
A+E +GIR N I PG I TPM+ + P K E F ++ P KR+G+
Sbjct: 180 AVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAP 235
Score = 167 bits (425), Expect = 8e-49
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
SG ++N S+ G G QS YAA K GV T++ A+E +GIR N I PG I TPM
Sbjct: 144 SGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMV 203
Query: 409 TCV--------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
P K E F ++ P KR+G+ EI V+ FL SD +SY+ T++ + GG
Sbjct: 204 ENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQ 263
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 182 bits (463), Expect = 5e-54
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL--KLTEKDFQQVFDVN 233
++ DV+ S ++T KF + ++LVN AG + + +Q+ F +N
Sbjct: 81 NAVVADVTEASGQDDIINTTLAKFGKI-DILVNNAGANLADGTANTDQPVELYQKTFKLN 139
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAME 292
+ ++Q + L++TK G I+N+ SIV G + G YA KA ++ +T+ A++
Sbjct: 140 FQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAID 197
Query: 293 MATFGIRCNVILPGFIETPMTTSV---------PDKVKETFTRLIPLKRFGKPEAV 339
+ G+R N + PG + T ++ + IP+ GKPE +
Sbjct: 198 LIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEI 253
Score = 180 bits (458), Expect = 2e-53
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL--KLTEKDFQQVFDVN 66
++ DV+ S ++ KF + ++LVN AG + + +Q+ F +N
Sbjct: 81 NAVVADVTEASGQDDIINTTLAKFGKI-DILVNNAGANLADGTANTDQPVELYQKTFKLN 139
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAME 125
+ ++Q + L++TK G I+N+ SIV G + G YA KA ++ +T+ A++
Sbjct: 140 FQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAID 197
Query: 126 MATFGIRCNVILPGFIETPMITSV---------PDKVKETFTRLIPLKRFGKPE 170
+ G+R N + PG + T + ++ + IP+ GKPE
Sbjct: 198 LIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPE 251
Score = 159 bits (405), Expect = 1e-45
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
+ L++TK G I+N+ SIV G + G YA KA ++ +T+ A+++ G+R N
Sbjct: 149 KTKEHLIKTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVN 206
Query: 397 VILPGFIETPMTTCV---------PDKVKETFTRLIPFKRFGKPEEIGEVICFLAS-DRS 446
+ PG + T + + IP GKPEEI +I FLA + S
Sbjct: 207 SVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLS 266
Query: 447 SYITGTLIKVTGGL 460
SYI G I GG
Sbjct: 267 SYIIGQSIVADGGS 280
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 180 bits (459), Expect = 6e-54
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ P D+S+ + I + + +F ++LVN AGI + + + ++ +NL
Sbjct: 54 VHHPADLSDVAQIEALFALAEREFGGV-DILVNNAGIQHVAPVEQFPLESWDKIIALNLS 112
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F ++ + G IINI S+ G +G+ G++ Y A K GV TK V +E AT
Sbjct: 113 AVFHGTRLALPGMRARNW-GRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETAT 171
Query: 296 FGIRCNVILPGFIETPMT-----------TSVPDKVKETFTRLIPLKRFGKPEAV 339
+ CN I PG++ TP+ + P F PE +
Sbjct: 172 SNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHL 226
Score = 178 bits (454), Expect = 3e-53
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ P D+S+ + I + + +F ++LVN AGI + + + ++ +NL
Sbjct: 54 VHHPADLSDVAQIEALFALAEREFGGV-DILVNNAGIQHVAPVEQFPLESWDKIIALNLS 112
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F ++ + G IINI S+ G +G+ G++ Y A K GV TK V +E AT
Sbjct: 113 AVFHGTRLALPGMRARNW-GRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETAT 171
Query: 129 FGIRCNVILPGFIETPMI-----------TSVPDKVKETFTRLIPLKRFGKPE 170
+ CN I PG++ TP++ + P F PE
Sbjct: 172 SNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPE 224
Score = 158 bits (403), Expect = 7e-46
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IINI S+ G +G+ G++ Y A K GV TK V +E AT + CN I PG++ TP+
Sbjct: 130 WGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLV 189
Query: 409 -----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+ P F PE +GE++ FL S+ S + G V
Sbjct: 190 QKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVD 249
Query: 458 GG 459
GG
Sbjct: 250 GG 251
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 180 bits (459), Expect = 6e-54
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 6/161 (3%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D S + I + +K + S +V+ A +F ++F V++ +L+
Sbjct: 79 DFSCETGIMAFIDLLKTQTSSL-RAVVHNASEWLAE-TPGEEADNFTRMFSVHMLAPYLI 136
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+ L ++ I++I V + G+ Y ATKAG+E+ T S A A ++
Sbjct: 137 NLHCEPLLTASEV-ADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKV 194
Query: 301 NVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCK 341
N I P + + L E + +
Sbjct: 195 NGIAPALLMFQPKDD--AAYRANALAKSALGIEPGAEVIYQ 233
Score = 177 bits (451), Expect = 8e-53
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 6/157 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D S + I + +K + S +V+ A +F ++F V++ +L+
Sbjct: 79 DFSCETGIMAFIDLLKTQTSSL-RAVVHNASEWLAE-TPGEEADNFTRMFSVHMLAPYLI 136
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+ L ++ I++I V + G+ Y ATKAG+E+ T S A A ++
Sbjct: 137 NLHCEPLLTASEV-ADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKV 194
Query: 134 NVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
N I P + + L E
Sbjct: 195 NGIAPALLMFQPKDD--AAYRANALAKSALGIEPGAE 229
Score = 152 bits (387), Expect = 2e-43
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
L ++ I++I V + G+ Y ATKAG+E+ T S A A ++ N
Sbjct: 139 HCEPLLTASEV-ADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKVNG 196
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
I P + + E I + + +L S+Y+TGT + V
Sbjct: 197 IAPALLMFQPKD--DAAYRANALAKSALGIEPGAEVIYQSLRYLLD--STYVTGTTLTVN 252
Query: 458 GG 459
GG
Sbjct: 253 GG 254
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 180 bits (460), Expect = 7e-54
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 234
++L DVS+ + A+ + KF +++V AGI L ++ + VNL
Sbjct: 80 IALEADVSDELQMRNAVRDLVLKFGHL-DIVVANAGINGVWAPIDDLKPFEWDETIAVNL 138
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAME 292
+GTFL L + G+I+ + SI G G + Y ATKA A + +A+E
Sbjct: 139 RGTFLTLHLTVPYLKQRGG-GAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALE 197
Query: 293 MATFGIRCNVILPGFIETPMTTSVPDKVKETFTRL---------IPLKRFGKPE 337
+ IR N + PG IET ++ + + +E I + G+ E
Sbjct: 198 LGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSE 251
Score = 179 bits (456), Expect = 3e-53
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 67
++L DVS+ + A+ + KF +++V AGI L ++ + VNL
Sbjct: 80 IALEADVSDELQMRNAVRDLVLKFGHL-DIVVANAGINGVWAPIDDLKPFEWDETIAVNL 138
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAME 125
+GTFL L + G+I+ + SI G G + Y ATKA A + +A+E
Sbjct: 139 RGTFLTLHLTVPYLKQRGG-GAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALE 197
Query: 126 MATFGIRCNVILPGFIETPMITSVPDKVKETFTRL---------IPLKRFGKPE 170
+ IR N + PG IET + + + +E I + G+ E
Sbjct: 198 LGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSE 251
Score = 163 bits (414), Expect = 5e-47
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
L + G+I+ + SI G G + Y ATKA A + +A+E+ IR
Sbjct: 147 LTVPYLKQRGG-GAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRV 205
Query: 396 NVILPGFIETPMTTCVPDKVKETFTRL---------IPFKRFGKPEEIGEVICFLASDRS 446
N + PG IET ++ + +E I + G+ E++ E+I FL S+R+
Sbjct: 206 NAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERA 265
Query: 447 SYITGTLIKVTGGLA 461
++TG+ + + GG
Sbjct: 266 RHVTGSPVWIDGGQG 280
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 181 bits (461), Expect = 1e-53
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV + +++ + +F ++LV+ GI+ + LT++ + + NL G +
Sbjct: 115 DVRDLASLQAVVDEALAEFGHI-DILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHA 173
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
+AV ++E GS+I + S VG G GQS+YAA+K GV+ S+A E+ IR
Sbjct: 174 CRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRV 233
Query: 134 NVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLS-----LPMDVSN 184
N + PG + T M + P + S L P DVSN
Sbjct: 234 NSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSN 289
Score = 180 bits (460), Expect = 2e-53
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV + +++ + +F ++LV+ GI+ + LT++ + + NL G +
Sbjct: 115 DVRDLASLQAVVDEALAEFGHI-DILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHA 173
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+AV ++E GS+I + S VG G GQS+YAA+K GV+ S+A E+ IR
Sbjct: 174 CRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRV 233
Query: 301 NVILPGFIETPMTTS--------------VPDKVKETFTRLIPLK-RFGKPEAV 339
N + PG + T M + + E F++L L + +PE V
Sbjct: 234 NSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDV 287
Score = 157 bits (398), Expect = 2e-44
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV ++E GS+I + S VG G GQS+YAA+K GV+ S+A E+ IR N
Sbjct: 176 AVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNS 235
Query: 398 ILPGFIETPMTTC--------------VPDKVKETFTRLIPFK-RFGKPEEIGEVICFLA 442
+ PG + T M + E F++L + +PE++ + +LA
Sbjct: 236 VNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLA 295
Query: 443 SDRSSYITGTLIKVTGGL 460
SD + YI G I V GG
Sbjct: 296 SDEARYIHGAAIPVDGGQ 313
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 179 bits (456), Expect = 2e-53
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 11/169 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D + + + R +++V AG+ + +T +DF+ V D+N+ GT+
Sbjct: 81 DTRDFDRLRKVVDDGVAALGRL-DIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNT 139
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
A ++E GSII I S G +Y A+K V ++ A E+ IR
Sbjct: 140 VMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRV 199
Query: 301 NVILPGFIETPMTTSVP----------DKVKETFTRLIPLKRFGKPEAV 339
N + PG + TPM + + +PE +
Sbjct: 200 NSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDI 248
Score = 179 bits (456), Expect = 3e-53
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D + + + R +++V AG+ + +T +DF+ V D+N+ GT+
Sbjct: 81 DTRDFDRLRKVVDDGVAALGRL-DIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNT 139
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
A ++E GSII I S G +Y A+K V ++ A E+ IR
Sbjct: 140 VMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRV 199
Query: 134 NVILPGFIETPMITSVP----------DKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVS 183
N + PG + TPM + + +PE D++
Sbjct: 200 NSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPE----------DIA 249
Query: 184 N 184
+
Sbjct: 250 D 250
Score = 158 bits (401), Expect = 3e-45
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++E GSII I S G +Y A+K V ++ A E+ IR N
Sbjct: 142 AGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNS 201
Query: 398 ILPGFIETPMTTCVP----------DKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSS 447
+ PG + TPM + + +PE+I + +C+LASD S
Sbjct: 202 VHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESR 261
Query: 448 YITGTLIKVTGGL 460
+T I V G
Sbjct: 262 KVTAAQIPVDQGS 274
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 178 bits (453), Expect = 3e-53
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 188 ISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKE 247
+ + + EK ++LV AG + +F +LT +DF++ D + +
Sbjct: 68 LRKDLDLLFEKVKEV-DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPA 126
Query: 248 LVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGF 307
+ E G I+ I S + + + F K+++ E+A +GI N + PG+
Sbjct: 127 MKEKGW-GRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGW 185
Query: 308 IETPMTTSV-PDKVKETFTRLIPLKRFGKPE 337
ET + ++ K+ IP++R KPE
Sbjct: 186 TETERVKELLSEEKKKQVESQIPMRRMAKPE 216
Score = 178 bits (453), Expect = 3e-53
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 21 ISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKE 80
+ + + EK ++LV AG + +F +LT +DF++ D + +
Sbjct: 68 LRKDLDLLFEKVKEV-DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPA 126
Query: 81 LVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGF 140
+ E G I+ I S + + + F K+++ E+A +GI N + PG+
Sbjct: 127 MKEKGW-GRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGW 185
Query: 141 IETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
ET + + ++ K+ IP++R KPE
Sbjct: 186 TETERVKELLSEEKKKQVESQIPMRRMAKPE 216
Score = 163 bits (414), Expect = 1e-47
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G I+ I S + + + F K+++ E+A +GI N + PG+ ET
Sbjct: 132 WGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERV 191
Query: 409 TCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ ++ K+ IP +R KPEEI V+ FL S+++SY+TG I V GGL+
Sbjct: 192 KELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGLS 245
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 178 bits (454), Expect = 5e-53
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 11/164 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D +N + + +K + R +VL AG ++TE+ + FD N+KG
Sbjct: 83 DSANLAELDRLYEKVKAEAGRI-DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
Q L S++ GS G G S YAA+KA + +F ++ +++ GIR
Sbjct: 142 VQKALPLLAR---GSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRI 198
Query: 301 NVILPGFIETPMTTSVPD-------KVKETFTRLIPLKRFGKPE 337
N + PG ET + + +P+ R G+ E
Sbjct: 199 NTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAE 242
Score = 178 bits (453), Expect = 7e-53
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D +N + + +K + R +VL AG ++TE+ + FD N+KG
Sbjct: 83 DSANLAELDRLYEKVKAEAGRI-DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 133
Q L S++ GS G G S YAA+KA + +F ++ +++ GIR
Sbjct: 142 VQKALPLLAR---GSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRI 198
Query: 134 NVILPGFIETPMITSVPD-------KVKETFTRLIPLKRFGKPE 170
N + PG ET + + + +P+ R G+ E
Sbjct: 199 NTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAE 242
Score = 161 bits (411), Expect = 1e-46
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
S++ GS G G S YAA+KA + +F ++ +++ GIR N + PG ET
Sbjct: 150 ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETT 209
Query: 407 MTTCVPD-------KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
+ + +P R G+ EE+ FLASD SS++TG + V GG
Sbjct: 210 GLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269
Query: 460 LA 461
A
Sbjct: 270 SA 271
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 178 bits (454), Expect = 5e-53
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 23/182 (12%)
Query: 9 LSLPMDVSNTSTISTA----MSAIKEKFSRPPNVLVNCAGITRDNWFL-----------K 53
+ D+S +S++ + F R +VLVN A L K
Sbjct: 65 VLCKGDLSLSSSLLDCCEDIIDCSFRAFGRC-DVLVNNASAYYPTPLLPGDDTNGAADAK 123
Query: 54 LTEKDFQQVFDVNLKGTFLVSQAVCKELVET----KSSGSIINIGSIVGQMGNMGQSNYA 109
+ ++F N + +A + E + S++N+ + + G Y
Sbjct: 124 PIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYT 183
Query: 110 ATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKR-FGK 168
K + T++ A+E+A IR N + PG P ++P + +E + R +PL +
Sbjct: 184 MAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP--AMPQETQEEYRRKVPLGQSEAS 241
Query: 169 PE 170
Sbjct: 242 AA 243
Score = 178 bits (454), Expect = 5e-53
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 23/182 (12%)
Query: 176 LSLPMDVSNTSTISTA----MSTIKEKFSRPPNVLVNCAGITRDNWFL-----------K 220
+ D+S +S++ + F R +VLVN A L K
Sbjct: 65 VLCKGDLSLSSSLLDCCEDIIDCSFRAFGRC-DVLVNNASAYYPTPLLPGDDTNGAADAK 123
Query: 221 LTEKDFQQVFDVNLKGTFLVSQAVCKELVET----KSSGSIINIGSIVGQMGNMGQSNYA 276
+ ++F N + +A + E + S++N+ + + G Y
Sbjct: 124 PIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYT 183
Query: 277 ATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKR-FGK 335
K + T++ A+E+A IR N + PG P +P + +E + R +PL +
Sbjct: 184 MAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPA--MPQETQEEYRRKVPLGQSEAS 241
Query: 336 PE 337
Sbjct: 242 AA 243
Score = 164 bits (418), Expect = 9e-48
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+ S++N+ + + G Y K + T++ A+E+A IR N + PG P
Sbjct: 159 SRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218
Query: 407 MTTCVPDKVKETFTRLIPFKR-FGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+P + +E + R +P + +I + I FL S + YITGT +KV GGL
Sbjct: 219 PA--MPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 178 bits (453), Expect = 5e-53
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEK------DFQQVFDV 232
P DV++ + TA++ K KF +V VNCAGI + L + DFQ+V DV
Sbjct: 64 PADVTSEKDVQTALALAKGKFG-RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDV 122
Query: 233 NLKGTFLVSQAVCK-----ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 287
NL GTF V + V E + G IIN S+ G +GQ+ Y+A+K G+ T
Sbjct: 123 NLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTL 182
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPE 337
+A ++A GIR I PG TP+ TS+P+KV +P R G P
Sbjct: 183 PIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPA 233
Score = 177 bits (450), Expect = 1e-52
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEK------DFQQVFDV 65
P DV++ + TA++ K KF +V VNCAGI + L + DFQ+V DV
Sbjct: 64 PADVTSEKDVQTALALAKGKFG-RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDV 122
Query: 66 NLKGTFLVSQAVCK-----ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 120
NL GTF V + V E + G IIN S+ G +GQ+ Y+A+K G+ T
Sbjct: 123 NLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTL 182
Query: 121 SVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
+A ++A GIR I PG TP++TS+P+KV +P R G P
Sbjct: 183 PIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPA 233
Score = 145 bits (367), Expect = 1e-40
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 342 ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPG 401
E + G IIN S+ G +GQ+ Y+A+K G+ T +A ++A GIR I PG
Sbjct: 142 EPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPG 201
Query: 402 FIETPMTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
TP+ T +P+KV +PF R G P E ++ + + ++ G +I++ G +
Sbjct: 202 LFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIE--NPFLNGEVIRLDGAI 259
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 176 bits (450), Expect = 9e-53
Identities = 35/164 (21%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ LP+D+++ + T + I +K+ ++LVN A + D + + +F+++ ++N+
Sbjct: 62 IVLPLDITDCTKADTEIKDIHQKYGAV-DILVNAAAMFMDGSLSEPVD-NFRKIMEINVI 119
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+ + + V + + K+ G I N+ S + G Y +TK + +S+ E+A
Sbjct: 120 AQYGILKTVTEIMKVQKN-GYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAP 178
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
GIR + PG++ T M K+ + +P+ +
Sbjct: 179 LGIRVTTLCPGWVNTDMAKKAGTPFKD--------EEMIQPDDL 214
Score = 173 bits (441), Expect = 2e-51
Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ LP+D+++ + T + I +K+ ++LVN A + D + + +F+++ ++N+
Sbjct: 62 IVLPLDITDCTKADTEIKDIHQKYGAV-DILVNAAAMFMDGSLSEPVD-NFRKIMEINVI 119
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+ + + V + + K+ G I N+ S + G Y +TK + +S+ E+A
Sbjct: 120 AQYGILKTVTEIMKVQKN-GYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAP 178
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTI 188
GIR + PG++ T M K+ + +P+ D+ N TI
Sbjct: 179 LGIRVTTLCPGWVNTDMAKKAGTPFKD--------EEMIQPD----------DLLN--TI 218
Query: 189 STAMSTIKEKFSRPPNVLVN 208
+ + NV +
Sbjct: 219 RCLL-------NLSENVCIK 231
Score = 130 bits (329), Expect = 3e-35
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
V + + K+ G I N+ S + G Y +TK + +S+ E+A GIR
Sbjct: 127 TVTEIMKVQKN-GYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTT 185
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLIKV 456
+ PG++ T M K+ + +P+++ I L + + I + ++
Sbjct: 186 LCPGWVNTDMAKKAGTPFKD--------EEMIQPDDLLNTIRCLLNLSENVCIKDIVFEM 237
Query: 457 TGG 459
Sbjct: 238 KKS 240
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 176 bits (449), Expect = 1e-52
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL----KLTEKDFQQVFDVNL 234
DV+ + A++ +E+ P +V+ AG+ L + F++V +VNL
Sbjct: 45 EGDVTREEDVRRAVARAQEEA--PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNL 102
Query: 235 KGTFLVSQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
GTF V + + E G I+N S+ G +GQ+ YAA+K GV A T
Sbjct: 103 LGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPA 162
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPE---AVCKELVE 345
A E+A +GIR + PG +TP+ +P+K K + +P R G+PE A+ ++E
Sbjct: 163 ARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILE 222
Score = 175 bits (446), Expect = 2e-52
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL----KLTEKDFQQVFDVNL 67
DV+ + A++ +E+ P +V+ AG+ L + F++V +VNL
Sbjct: 45 EGDVTREEDVRRAVARAQEEA--PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNL 102
Query: 68 KGTFLVSQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 122
GTF V + + E G I+N S+ G +GQ+ YAA+K GV A T
Sbjct: 103 LGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPA 162
Query: 123 AMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
A E+A +GIR + PG +TP++ +P+K K + +P R G+PE
Sbjct: 163 ARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPE 211
Score = 146 bits (370), Expect = 3e-41
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 342 ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPG 401
G I+N S+ G +GQ+ YAA+K GV A T A E+A +GIR + PG
Sbjct: 120 PPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPG 179
Query: 402 FIETPMTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+TP+ +P+K K + +PF R G+PEE ++ + + + G ++++ G L
Sbjct: 180 LFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGAL 237
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 176 bits (449), Expect = 1e-52
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 17/186 (9%)
Query: 178 LPMDVS-NTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 236
DV+ + + I ++ ++L+N AGI D+ ++ +N G
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTV-DILINGAGILDDH--------QIERTIAINFTG 110
Query: 237 TFLVSQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
+ A+ + K G I NI S+ G Y+A+KA V +FT S+A
Sbjct: 111 LVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAP 170
Query: 295 TFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPEAVCK---ELVETKSS 349
G+ I PG TP+ + V+ L+ E + + +E +
Sbjct: 171 ITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKN 230
Query: 350 GSIINI 355
G+I +
Sbjct: 231 GAIWKL 236
Score = 167 bits (425), Expect = 5e-49
Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 11 LPMDVS-NTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKG 69
DV+ + + I ++ ++L+N AGI D+ ++ +N G
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTV-DILINGAGILDDH--------QIERTIAINFTG 110
Query: 70 TFLVSQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
+ A+ + K G I NI S+ G Y+A+KA V +FT S+A
Sbjct: 111 LVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAP 170
Query: 128 TFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
G+ I PG TP++ + V+ L+ E
Sbjct: 171 ITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSE 215
Score = 139 bits (353), Expect = 1e-38
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 7/126 (5%)
Query: 338 AVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
A+ + K G I NI S+ G Y+A+KA V +FT S+A G+
Sbjct: 117 AILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTA 176
Query: 396 NVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
I PG TP+ V+ L+ E+ G+ G +
Sbjct: 177 YSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANK---NGAI 233
Query: 454 IKVTGG 459
K+ G
Sbjct: 234 WKLDLG 239
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 178 bits (454), Expect = 2e-52
Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 23/188 (12%)
Query: 172 SSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ---- 227
+ V+ + + ++ + R +VLVN A L+ E +
Sbjct: 113 PVSGADGSAPVTLFTRCAELVAACYTHWGRC-DVLVNNASSFYPTPLLRNDEDGHEPCVG 171
Query: 228 ----------QVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQ 272
+F N + + +A + T ++ SIIN+ + +G
Sbjct: 172 DREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGY 231
Query: 273 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-K 331
+ Y K +E T+S A+E+A IR N + PG + +P V E +PL +
Sbjct: 232 TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV--LVDDMPPAVWEGHRSKVPLYQ 289
Query: 332 RFGKPEAV 339
R V
Sbjct: 290 RDSSAAEV 297
Score = 176 bits (449), Expect = 1e-51
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 5 SSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ---- 60
+ V+ + + ++A + R +VLVN A L+ E +
Sbjct: 113 PVSGADGSAPVTLFTRCAELVAACYTHWGRC-DVLVNNASSFYPTPLLRNDEDGHEPCVG 171
Query: 61 ----------QVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQ 105
+F N + + +A + T ++ SIIN+ + +G
Sbjct: 172 DREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGY 231
Query: 106 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-K 164
+ Y K +E T+S A+E+A IR N + PG +P V E +PL +
Sbjct: 232 TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD--DMPPAVWEGHRSKVPLYQ 289
Query: 165 RFGKPE 170
R
Sbjct: 290 RDSSAA 295
Score = 169 bits (430), Expect = 6e-49
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
++ SIIN+ + +G + Y K +E T+S A+E+A IR N + PG
Sbjct: 211 GTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV-- 268
Query: 407 MTTCVPDKVKETFTRLIP-FKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +P V E +P ++R E+ +V+ FL S ++ YITGT +KV GG +
Sbjct: 269 LVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 176 bits (450), Expect = 2e-52
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQVFDVNLKG 236
+ DV+ + T +S +F R + +VN AG + + + F+Q+ ++NL G
Sbjct: 59 ILCDVTQEDDVKTLVSETIRRFGRL-DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG 117
Query: 237 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 296
T+ +++ L KS G++INI S+VG +G Y ATK V A TK++A++ + +
Sbjct: 118 TYTLTKLALPYLR--KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY 175
Query: 297 GIRCNVILPGFIETPMTTSV------PDKVKETFTRLIPLKRFGKPE 337
G+R N I PG I TP+ + P PL R G+P
Sbjct: 176 GVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPA 222
Score = 176 bits (449), Expect = 2e-52
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQVFDVNLKG 69
+ DV+ + T +S +F R + +VN AG + + + F+Q+ ++NL G
Sbjct: 59 ILCDVTQEDDVKTLVSETIRRFGRL-DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG 117
Query: 70 TFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF 129
T+ +++ L KS G++INI S+VG +G Y ATK V A TK++A++ + +
Sbjct: 118 TYTLTKLALPYLR--KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY 175
Query: 130 GIRCNVILPGFIETPMITSV------PDKVKETFTRLIPLKRFGKPE 170
G+R N I PG I TP+ + P PL R G+P
Sbjct: 176 GVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPA 222
Score = 156 bits (396), Expect = 1e-44
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
KS G++INI S+VG +G Y ATK V A TK++A++ + +G+R N I PG I TP
Sbjct: 131 KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTP 190
Query: 407 MTTCV------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+ + P P R G+P E+G FLAS+ +++ TG + VTGG
Sbjct: 191 LWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGA 249
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 176 bits (449), Expect = 2e-52
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV++ + + + F R ++LVN AG+ EK++++ +NL
Sbjct: 66 DVADQQQLRDTFRKVVDHFGRL-DILVNNAGVNN--------EKNWEKTLQINLVSVISG 116
Query: 241 SQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAM--EMATF 296
+ + + G IIN+ S+ G M Q Y A+K G+ FT+S A+ +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 176
Query: 297 GIRCNVILPGFIETPMTTSVPDK--------VKETFTRLIPLKRFGKPE 337
G+R N I PGF+ T + S+ + K+ +I P
Sbjct: 177 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPP 225
Score = 175 bits (445), Expect = 8e-52
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV++ + + + F R ++LVN AG+ EK++++ +NL
Sbjct: 66 DVADQQQLRDTFRKVVDHFGRL-DILVNNAGVNN--------EKNWEKTLQINLVSVISG 116
Query: 74 SQAVCKELVETKS--SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAM--EMATF 129
+ + + G IIN+ S+ G M Q Y A+K G+ FT+S A+ +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 176
Query: 130 GIRCNVILPGFIETPMITSVPDK--------VKETFTRLIPLKRFGKPE 170
G+R N I PGF+ T ++ S+ + K+ +I P
Sbjct: 177 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPP 225
Score = 155 bits (393), Expect = 3e-44
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 348 SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAM--EMATFGIRCNVILPGFIET 405
G IIN+ S+ G M Q Y A+K G+ FT+S A+ + G+R N I PGF+ T
Sbjct: 131 EGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNT 190
Query: 406 PMTTCVPDK--------VKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
+ + + K+ +I + P I + L D + + G ++K+T
Sbjct: 191 AILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDA--LNGAIMKIT 248
Query: 458 GG 459
Sbjct: 249 TS 250
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 176 bits (448), Expect = 3e-52
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 14/174 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L + +DV+ + + +++ F ++LVN AG + ++ ++ +Q +++ +
Sbjct: 60 LEVAVDVATPEGVDAVVESVRSSFGGA-DILVNNAGTGSNETIMEAADEKWQFYWELLVM 118
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+++ + + G+II+ SI + Y TKA + F+K++A E+
Sbjct: 119 AAVRLARGLVPGMRARGG-GAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIK 177
Query: 296 FGIRCNVILPGFIETPMT------------TSVPDKVKETFTRLIPLKRFGKPE 337
IR N I PG I TP ++ P+KRF PE
Sbjct: 178 DNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPE 231
Score = 176 bits (448), Expect = 3e-52
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 14/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L + +DV+ + + +++ F ++LVN AG + ++ ++ +Q +++ +
Sbjct: 60 LEVAVDVATPEGVDAVVESVRSSFGGA-DILVNNAGTGSNETIMEAADEKWQFYWELLVM 118
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+++ + + G+II+ SI + Y TKA + F+K++A E+
Sbjct: 119 AAVRLARGLVPGMRARGG-GAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIK 177
Query: 129 FGIRCNVILPGFIETPMI------------TSVPDKVKETFTRLIPLKRFGKPE 170
IR N I PG I TP ++ P+KRF PE
Sbjct: 178 DNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPE 231
Score = 160 bits (406), Expect = 4e-46
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G+II+ SI + Y TKA + F+K++A E+ IR N I PG I TP
Sbjct: 136 GGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDW 195
Query: 409 ------------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
++ P KRF PEE+ FL S+R++Y G+ V
Sbjct: 196 IKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAYFV 255
Query: 457 TGGL 460
GG+
Sbjct: 256 DGGM 259
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 176 bits (448), Expect = 3e-52
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+DV+N + A+ +K+ R ++LVN AGI + + + ++++ DVN+ G+
Sbjct: 58 FKIDVTNEEEVKEAVEKTTKKYGRI-DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGS 116
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+L+++ ++ GSIINI S+ + Y +K + T+SVA++ A
Sbjct: 117 YLMAKYTIPVMLAIGH-GSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-K 174
Query: 298 IRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPE 337
IRCN + PG I TPM ++ E + R P+ R G+PE
Sbjct: 175 IRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPE 225
Score = 175 bits (446), Expect = 5e-52
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+DV+N + A+ +K+ R ++LVN AGI + + + ++++ DVN+ G+
Sbjct: 58 FKIDVTNEEEVKEAVEKTTKKYGRI-DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGS 116
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+L+++ ++ GSIINI S+ + Y +K + T+SVA++ A
Sbjct: 117 YLMAKYTIPVMLAIGH-GSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-K 174
Query: 131 IRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
IRCN + PG I TPM+ ++ E + R P+ R G+PE
Sbjct: 175 IRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPE 225
Score = 155 bits (395), Expect = 2e-44
Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
GSIINI S+ + Y +K + T+SVA++ A IRCN + PG I TPM
Sbjct: 132 HGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMV 190
Query: 409 -----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
++ E + R P R G+PEE+ EV+ FLASDRSS+ITG + V
Sbjct: 191 IKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVD 250
Query: 458 GGL 460
GGL
Sbjct: 251 GGL 253
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 176 bits (449), Expect = 3e-52
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 172 SSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ---- 227
+ V+ + + ++ + R +VLVN A L+ E +
Sbjct: 76 PVSGADGSAPVTLFTRCAELVAACYTHWGRC-DVLVNNASSFYPTPLLRNDEDGHEPCVG 134
Query: 228 ----------QVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQ 272
+F N + + +A + T ++ SIIN+ + +G
Sbjct: 135 DREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGY 194
Query: 273 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-K 331
+ Y K +E T+S A+E+A IR N + PG + +P V E +PL +
Sbjct: 195 TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV--LVDDMPPAVWEGHRSKVPLYQ 252
Query: 332 RFGKPE 337
R
Sbjct: 253 RDSSAA 258
Score = 175 bits (445), Expect = 1e-51
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 5 SSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ---- 60
+ V+ + + ++A + R +VLVN A L+ E +
Sbjct: 76 PVSGADGSAPVTLFTRCAELVAACYTHWGRC-DVLVNNASSFYPTPLLRNDEDGHEPCVG 134
Query: 61 ----------QVFDVNLKGTFLVSQAVCKELVET-----KSSGSIINIGSIVGQMGNMGQ 105
+F N + + +A + T ++ SIIN+ + +G
Sbjct: 135 DREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGY 194
Query: 106 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-K 164
+ Y K +E T+S A+E+A IR N + PG +P V E +PL +
Sbjct: 195 TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD--DMPPAVWEGHRSKVPLYQ 252
Query: 165 RFGKPE 170
R
Sbjct: 253 RDSSAA 258
Score = 167 bits (426), Expect = 9e-49
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
++ SIIN+ + +G + Y K +E T+S A+E+A IR N + PG
Sbjct: 174 GTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV-- 231
Query: 407 MTTCVPDKVKETFTRLIP-FKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +P V E +P ++R E+ +V+ FL S ++ YITGT +KV GG +
Sbjct: 232 LVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 176 bits (448), Expect = 4e-52
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
+V I + F + +++ + +G+ +T ++F +VF +N +G F V
Sbjct: 87 NVGVVEDIVRMFEEAVKIFGKL-DIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
++ K L + G +I +GSI GQ + Y+ +K +E F + +A++MA I
Sbjct: 146 AREAYKHL---EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKIT 202
Query: 300 CNVILPGFIETPMTTSV-------------PDKVKETFTRLIPLKRFGKPE 337
NV+ PG I+T M +V + + + PL+R G P
Sbjct: 203 VNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPI 253
Score = 174 bits (444), Expect = 2e-51
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
+V I + F + +++ + +G+ +T ++F +VF +N +G F V
Sbjct: 87 NVGVVEDIVRMFEEAVKIFGKL-DIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
++ K L + G +I +GSI GQ + Y+ +K +E F + +A++MA I
Sbjct: 146 AREAYKHL---EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKIT 202
Query: 133 CNVILPGFIETPM-------------ITSVPDKVKETFTRLIPLKRFGKPE 170
NV+ PG I+T M S + + + PL+R G P
Sbjct: 203 VNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPI 253
Score = 151 bits (384), Expect = 8e-43
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 349 SGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G +I +GSI GQ + Y+ +K +E F + +A++MA I NV+ PG I+T M
Sbjct: 156 GGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDM 215
Query: 408 T-------------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+ + + P +R G P +I V+CFLAS+ ++TG +I
Sbjct: 216 YHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI 275
Query: 455 KVTGGLA 461
+ GG
Sbjct: 276 GIDGGAC 282
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 175 bits (446), Expect = 5e-52
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPN-----VLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ + + S++ + +L+N AGI + + TE+ F ++ VN K
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK 124
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F + Q L + + IINI S ++ Y+ TK + T ++A ++
Sbjct: 125 APFFIIQQALSRLRD---NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGA 181
Query: 296 FGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
GI N ILPGF++T M + +K+ T + R G+ E
Sbjct: 182 RGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVE 225
Score = 173 bits (440), Expect = 3e-51
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPN-----VLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ + + S++ + +L+N AGI + + TE+ F ++ VN K
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK 124
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F + Q L + + IINI S ++ Y+ TK + T ++A ++
Sbjct: 125 APFFIIQQALSRLRD---NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGA 181
Query: 129 FGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
GI N ILPGF++T M + +K+ T + R G+ E
Sbjct: 182 RGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVE 225
Score = 154 bits (393), Expect = 2e-44
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+ IINI S ++ Y+ TK + T ++A ++ GI N ILPGF++T M
Sbjct: 140 NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMN 199
Query: 409 TCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLA 461
+ +K+ T + F R G+ E+I + FLAS S ++TG LI V+GG
Sbjct: 200 AELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSC 254
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 174 bits (444), Expect = 1e-51
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 17/170 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D+ I F ++ V+ +G+ +TE++F +VF +N +G F V
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHL-DIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFV 134
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQ-MGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
++ + L E G I+ S + S Y+ +K V++F + + + I
Sbjct: 135 AREAYRHLTE---GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKIT 191
Query: 300 CNVILPGFIETPM------------TTSVPDKVKETFTRLIPLKRFGKPE 337
N + PG T M T+ ++ ++ PL R G P+
Sbjct: 192 VNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQ 241
Score = 173 bits (442), Expect = 2e-51
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D+ I F ++ V+ +G+ +TE++F +VF +N +G F V
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHL-DIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFV 134
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQ-MGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
++ + L E G I+ S + S Y+ +K V++F + + + I
Sbjct: 135 AREAYRHLTE---GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKIT 191
Query: 133 CNVILPGFIETPM------------ITSVPDKVKETFTRLIPLKRFGKPE 170
N + PG T M + ++ ++ PL R G P+
Sbjct: 192 VNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQ 241
Score = 152 bits (386), Expect = 3e-43
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 349 SGSIINIGSIVGQ-MGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G I+ S + S Y+ +K V++F + + + I N + PG T M
Sbjct: 145 GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDM 204
Query: 408 ------------TTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIK 455
T+ ++ ++ P R G P+++ V+ FL S ++ G ++
Sbjct: 205 FHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLT 264
Query: 456 VTGGLA 461
+ GG A
Sbjct: 265 LDGGAA 270
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 175 bits (445), Expect = 1e-51
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLK-----LTEKDFQQVFDVN 233
+V++ ++ A+ + R +V G ++ F + D+
Sbjct: 82 STNVTSEDSVLAAIEAANQLG-RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLY 140
Query: 234 LKGTFLVSQAVCKELVETK-----SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 288
L GT+ V++ V + + G+++ SI G G +GQ+ YAA KAGV T +
Sbjct: 141 LNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIA 200
Query: 289 VAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPE 337
A ++++ GIR N I PG ++TP+ SV ++ F IP KR G P+
Sbjct: 201 AARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPD 250
Score = 174 bits (443), Expect = 2e-51
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLK-----LTEKDFQQVFDVN 66
+V++ ++ A+ A + R +V G ++ F + D+
Sbjct: 82 STNVTSEDSVLAAIEAANQLG-RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLY 140
Query: 67 LKGTFLVSQAVCKELVETK-----SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 121
L GT+ V++ V + + G+++ SI G G +GQ+ YAA KAGV T +
Sbjct: 141 LNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIA 200
Query: 122 VAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
A ++++ GIR N I PG ++TP++ SV ++ F IP KR G P+
Sbjct: 201 AARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPD 250
Score = 152 bits (386), Expect = 4e-43
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 342 ELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPG 401
E E G+++ SI G G +GQ+ YAA KAGV T + A ++++ GIR N I PG
Sbjct: 159 EPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPG 218
Query: 402 FIETPMTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
++TP+ V ++ F IPF KR G P+E + FL ++ YI G ++++ G
Sbjct: 219 TMKTPIMESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTN--GYINGEVMRLDGAQ 276
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 174 bits (443), Expect = 2e-51
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++P D+S+ + + E +R ++LVN AG + +++V +N+
Sbjct: 80 QAIPADLSSEAGARRLAQALGELSARL-DILVNNAGTSWGAALESYPVSGWEKVMQLNVT 138
Query: 236 GTFLVSQAVCKELVETKS---SGSIINIGSIVGQMGNMGQS-NYAATKAGVEAFTKSVAM 291
F Q + L + S +INIGS+ G Q+ Y +KA + ++ +A
Sbjct: 139 SVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAK 198
Query: 292 EMATFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLIPLKRFGKPE 337
E+ I NVI PG + MT + + + E + IP+ R+G+PE
Sbjct: 199 ELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPE 246
Score = 171 bits (435), Expect = 3e-50
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++P D+S+ + A+ E +R ++LVN AG + +++V +N+
Sbjct: 80 QAIPADLSSEAGARRLAQALGELSARL-DILVNNAGTSWGAALESYPVSGWEKVMQLNVT 138
Query: 69 GTFLVSQAVCKELVETKS---SGSIINIGSIVGQMGNMGQS-NYAATKAGVEAFTKSVAM 124
F Q + L + S +INIGS+ G Q+ Y +KA + ++ +A
Sbjct: 139 SVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAK 198
Query: 125 EMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKRFGKPE 170
E+ I NVI PG + M + + + E + IP+ R+G+PE
Sbjct: 199 ELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPE 246
Score = 135 bits (343), Expect = 6e-37
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 349 SGSIINIGSIVGQMGNMGQS-NYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
+INIGS+ G Q+ Y +KA + ++ +A E+ I NVI PG + M
Sbjct: 160 PARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219
Query: 408 TTCVPD--KVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
T + + + E + IP R+G+PEE+ + LA +Y+TG +I + GG
Sbjct: 220 TRHIANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 174 bits (443), Expect = 2e-51
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 19/179 (10%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKD-----FQQ 228
+ + DV + A F + + L+ AGI + L +D F
Sbjct: 52 NAVGVVGDVRSLQDQKRAAERCLAAFGKI-DTLIPNAGIWDYSTALADLPEDKIDAAFDD 110
Query: 229 VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 288
+F VN+KG +A LV ++ GS++ S G N G Y ATK V +
Sbjct: 111 IFHVNVKGYIHAVKACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQ 168
Query: 289 VAMEMATFGIRCNVILPGFIETPMTTSVP----------DKVKETFTRLIPLKRFGKPE 337
+A E+A +R N + PG + T + + + ++P+ R E
Sbjct: 169 MAFELAP-HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALE 226
Score = 173 bits (440), Expect = 6e-51
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 19/179 (10%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKD-----FQQ 61
+ + DV + A F + + L+ AGI + L +D F
Sbjct: 52 NAVGVVGDVRSLQDQKRAAERCLAAFGKI-DTLIPNAGIWDYSTALADLPEDKIDAAFDD 110
Query: 62 VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 121
+F VN+KG +A LV ++ GS++ S G N G Y ATK V +
Sbjct: 111 IFHVNVKGYIHAVKACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQ 168
Query: 122 VAMEMATFGIRCNVILPGFIETPMITSVP----------DKVKETFTRLIPLKRFGKPE 170
+A E+A +R N + PG + T + + + ++P+ R E
Sbjct: 169 MAFELAP-HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALE 226
Score = 151 bits (383), Expect = 1e-42
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 14/135 (10%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A LV ++ GS++ S G N G Y ATK V + +A E+A +R N
Sbjct: 125 ACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP-HVRVNG 181
Query: 398 ILPGFIETPMTTCVP----------DKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RS 446
+ PG + T + + + ++P R EE F A+ S
Sbjct: 182 VAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDS 241
Query: 447 SYITGTLIKVTGGLA 461
TG L+ GG+
Sbjct: 242 LPATGALLNYDGGMG 256
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 173 bits (440), Expect = 7e-51
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI----TRDNWFLKLTEKDFQQVFD 231
S+ DV+ + +ST KF + ++LVN AG ++ + + + +
Sbjct: 61 NSVVADVTTDAGQDEILSTTLGKFGKL-DILVNNAGAAIPDSQSKTGTAQSIESYDATLN 119
Query: 232 VNLKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVA 290
+NL+ +++ L TK G I+NI SI G Y+ KA ++ +T++ A
Sbjct: 120 LNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTA 177
Query: 291 MEMATFGIRCNVILPGFIETPMTTSV---------PDKVKETFTRLIPLKRFGKPE 337
+++ GIR N I PG + T +++ T +P G+P+
Sbjct: 178 IDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQ 233
Score = 171 bits (435), Expect = 3e-50
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI----TRDNWFLKLTEKDFQQVFD 64
S+ DV+ + +S KF + ++LVN AG ++ + + + +
Sbjct: 61 NSVVADVTTDAGQDEILSTTLGKFGKL-DILVNNAGAAIPDSQSKTGTAQSIESYDATLN 119
Query: 65 VNLKGTFLVSQAVCKELVETKSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVA 123
+NL+ +++ L TK G I+NI SI G Y+ KA ++ +T++ A
Sbjct: 120 LNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTA 177
Query: 124 MEMATFGIRCNVILPGFIETPMITSV---------PDKVKETFTRLIPLKRFGKPE 170
+++ GIR N I PG + T +++ T +P G+P+
Sbjct: 178 IDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQ 233
Score = 153 bits (388), Expect = 2e-43
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 347 KSSGSIINIGSIV-GQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 405
+ G I+NI SI G Y+ KA ++ +T++ A+++ GIR N I PG + T
Sbjct: 138 STKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVAT 197
Query: 406 PMTTCV---------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLIK 455
+ + T +P G+P++I EVI FLA SSYI G +
Sbjct: 198 GFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLV 257
Query: 456 VTGGLA 461
V GG +
Sbjct: 258 VDGGSS 263
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 171 bits (435), Expect = 1e-50
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL----KLTEKDFQQVFDVNL 234
DV++ + +++A+ E ++VNCAG L + F+++ D+NL
Sbjct: 58 AADVTDEAAVASALDLA-ETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINL 115
Query: 235 KGTFLVSQAVCKELVETKS-------SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 287
G+F V + + + +T+ G IIN S+ G +GQ+ Y+A+K GV T
Sbjct: 116 VGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTL 175
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPL-KRFGKPE---AVCKEL 343
+A ++A+ IR I PG +TP+ S+P++ + + + +P R G P+ A+ +
Sbjct: 176 PIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPDEYGALAVHI 235
Query: 344 VE 345
+E
Sbjct: 236 IE 237
Score = 170 bits (433), Expect = 3e-50
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL----KLTEKDFQQVFDVNL 67
DV++ + +++A+ + E ++VNCAG L + F+++ D+NL
Sbjct: 58 AADVTDEAAVASAL-DLAETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINL 115
Query: 68 KGTFLVSQAVCKELVETKS-------SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 120
G+F V + + + +T+ G IIN S+ G +GQ+ Y+A+K GV T
Sbjct: 116 VGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTL 175
Query: 121 SVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPL-KRFGKPE 170
+A ++A+ IR I PG +TP++ S+P++ + + + +P R G P+
Sbjct: 176 PIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPD 226
Score = 144 bits (365), Expect = 2e-40
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 345 ETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIE 404
+ G IIN S+ G +GQ+ Y+A+K GV T +A ++A+ IR I PG +
Sbjct: 138 NAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFD 197
Query: 405 TPMTTCVPDKVKETFTRLIPF-KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
TP+ +P++ + + + +P R G P+E G + + + + G +I++ G +
Sbjct: 198 TPLLASLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIE--NPMLNGEVIRLDGAI 252
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 172 bits (438), Expect = 2e-50
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNLKGTFL 239
DV + + A+ + R ++++ A + + L ++ K ++ + DVNL G ++
Sbjct: 97 DVRDFDAMQAAVDDGVTQLGRL-DIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWI 155
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
++ ++ K GSI+ SI G G NY A+K G+ +++A+E+ IR
Sbjct: 156 TARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIR 215
Query: 300 CNVILPGFIETPMTTSVPD----------------KVKETFTRLIPLKRFGKPEAV 339
N++ P + TPM + P +V ++P+ + +P +
Sbjct: 216 VNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPI-PYVEPADI 270
Score = 171 bits (436), Expect = 4e-50
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNLKGTFL 72
DV + + A+ + R ++++ A + + L ++ K ++ + DVNL G ++
Sbjct: 97 DVRDFDAMQAAVDDGVTQLGRL-DIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWI 155
Query: 73 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
++ ++ K GSI+ SI G G NY A+K G+ +++A+E+ IR
Sbjct: 156 TARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIR 215
Query: 133 CNVILPGFIETPMITSVPD----------------KVKETFTRLIPLKRFGKPEGSSTHL 176
N++ P + TPM+ + P +V ++P+ + +P
Sbjct: 216 VNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPI-PYVEPA------ 268
Query: 177 SLPMDVSN 184
D+SN
Sbjct: 269 ----DISN 272
Score = 156 bits (397), Expect = 2e-44
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
++ K GSI+ SI G G NY A+K G+ +++A+E+ IR N+
Sbjct: 159 VAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNI 218
Query: 398 ILPGFIETPMTTCVPD----------------KVKETFTRLIPFKRFGKPEEIGEVICFL 441
+ P + TPM P +V ++P + +P +I I FL
Sbjct: 219 VCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPI-PYVEPADISNAILFL 277
Query: 442 ASDRSSYITGTLIKVTGGL 460
SD + YITG + V GG
Sbjct: 278 VSDDARYITGVSLPVDGGA 296
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 169 bits (431), Expect = 7e-50
Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 14/175 (8%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
+ D+ I ++ ++LV G R F++L +D+ + + +
Sbjct: 59 QVDIVAGDIREPGDIDRLFEKARDL--GGADILVYSTGGPRPGRFMELGVEDWDESYRLL 116
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
+ V + +++VE G ++ IGS+ + + V +++A+E+
Sbjct: 117 ARSAVWVGRRAAEQMVEKGW-GRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL 175
Query: 127 ATFGIRCNVILPGFIETPMITSV-----------PDKVKETFTRLIPLKRFGKPE 170
A G+ N +LP I T + S+ ++ ++ IP+ R GKPE
Sbjct: 176 APHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPE 230
Score = 169 bits (431), Expect = 8e-50
Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 14/175 (8%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 233
+ D+ I ++ ++LV G R F++L +D+ + + +
Sbjct: 59 QVDIVAGDIREPGDIDRLFEKARDL--GGADILVYSTGGPRPGRFMELGVEDWDESYRLL 116
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
+ V + +++VE G ++ IGS+ + + V +++A+E+
Sbjct: 117 ARSAVWVGRRAAEQMVEKGW-GRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL 175
Query: 294 ATFGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFGKPE 337
A G+ N +LP I T S+ ++ ++ IP+ R GKPE
Sbjct: 176 APHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPE 230
Score = 152 bits (386), Expect = 2e-43
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+++VE G ++ IGS+ + + V +++A+E+A G+ N
Sbjct: 126 RAAEQMVEKGW-GRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNA 184
Query: 398 ILPGFIETPMTTCV-----------PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRS 446
+LP I T + ++ ++ IP R GKPEE+ V+ FLAS+++
Sbjct: 185 VLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKA 244
Query: 447 SYITGTLIKVTGGLA 461
S+ITG +I V GG
Sbjct: 245 SFITGAVIPVDGGAH 259
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 169 bits (429), Expect = 1e-49
Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 5/165 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ +D N ++ ++ P V + G + L+ T++ F++V+++
Sbjct: 59 VARSLDARNEDEVTAFLNAADAHA--PLEVTIFNVGANVNFPILETTDRVFRKVWEMACW 116
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F+ + + ++ G I G+ G G + +A+ K G+ A +S+A E+
Sbjct: 117 AGFVSGRESARLMLAHGQ-GKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMP 175
Query: 296 FGIR-CNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I ++I+ ++T +++ L P AV
Sbjct: 176 KNIHVAHLIIDSGVDTAWVRERREQMFGK-DALANPDLLMPPAAV 219
Score = 166 bits (422), Expect = 1e-48
Identities = 28/163 (17%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ +D N ++ ++A P V + G + L+ T++ F++V+++
Sbjct: 59 VARSLDARNEDEVTAFLNAADAHA--PLEVTIFNVGANVNFPILETTDRVFRKVWEMACW 116
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F+ + + ++ G I G+ G G + +A+ K G+ A +S+A E+
Sbjct: 117 AGFVSGRESARLMLAHGQ-GKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMP 175
Query: 129 FGIR-CNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
I ++I+ ++T + +++ L P
Sbjct: 176 KNIHVAHLIIDSGVDTAWVRERREQMFGK-DALANPDLLMPPA 217
Score = 120 bits (304), Expect = 1e-31
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 3/114 (2%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR-CN 396
+ ++ G I G+ G G + +A+ K G+ A +S+A E+ I +
Sbjct: 124 ESARLMLAHGQ-GKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAH 182
Query: 397 VILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYIT 450
+I+ ++T +++ P P + L S T
Sbjct: 183 LIIDSGVDTAWVRERREQMFGKDALANP-DLLMPPAAVAGAYWQLYQQPKSAWT 235
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 167 bits (426), Expect = 3e-49
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ DVS+ + + M+ ++ + NVLVN AGI +DF ++ +N +
Sbjct: 57 VRHDVSSEADWTLVMAAVQRRLGTL-NVLVNNAGILLPGDMETGRLEDFSRLLKINTESV 115
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT-- 295
F+ Q + ++ GSIIN+ S+ + + Y+A+KA V A T++ A+
Sbjct: 116 FIGCQQGIAAMK--ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQG 173
Query: 296 FGIRCNVILPGFIETPMTTSV-----PDKVKETFTRLIPLKRFGKPE 337
+ IR N I P I TPM + ++ +L R PE
Sbjct: 174 YAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPE 220
Score = 167 bits (425), Expect = 5e-49
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ DVS+ + + M+A++ + NVLVN AGI +DF ++ +N +
Sbjct: 57 VRHDVSSEADWTLVMAAVQRRLGTL-NVLVNNAGILLPGDMETGRLEDFSRLLKINTESV 115
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT-- 128
F+ Q + ++ GSIIN+ S+ + + Y+A+KA V A T++ A+
Sbjct: 116 FIGCQQGIAAMK--ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQG 173
Query: 129 FGIRCNVILPGFIETPMITSV-----PDKVKETFTRLIPLKRFGKPE 170
+ IR N I P I TPM+ + ++ +L R PE
Sbjct: 174 YAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPE 220
Score = 150 bits (382), Expect = 8e-43
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT--FGIRCNVILPGFIE 404
++ GSIIN+ S+ + + Y+A+KA V A T++ A+ + IR N I P I
Sbjct: 128 ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIY 187
Query: 405 TPMT-----TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
TPM V ++ +L R PE I +++ FLASD SS ++G+ +
Sbjct: 188 TPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247
Query: 460 L 460
+
Sbjct: 248 I 248
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 168 bits (428), Expect = 3e-49
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQVFDVNL 234
+L DV + + + +F + N AG L+ + +++ D NL
Sbjct: 60 AALAGDVGDEALHEALVELAVRRFGGL-DTAFNNAGALGAMGEISSLSVEGWRETLDTNL 118
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEM 293
FL ++ + GS+ S VG G G + YAA+KAG+ +++A+E+
Sbjct: 119 TSAFLAAKYQVPAIAALGG-GSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVEL 177
Query: 294 ATFGIRCNVILPGFIETPMTTSV----PDKVKETFTRLIPLKRFGKPE 337
GIR N +LPG +TP + + + L LKR +PE
Sbjct: 178 GARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPE 225
Score = 167 bits (426), Expect = 7e-49
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQVFDVNL 67
+L DV + + + +F + N AG L+ + +++ D NL
Sbjct: 60 AALAGDVGDEALHEALVELAVRRFGGL-DTAFNNAGALGAMGEISSLSVEGWRETLDTNL 118
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEM 126
FL ++ + GS+ S VG G G + YAA+KAG+ +++A+E+
Sbjct: 119 TSAFLAAKYQVPAIAALGG-GSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVEL 177
Query: 127 ATFGIRCNVILPGFIETPMITSV----PDKVKETFTRLIPLKRFGKPE 170
GIR N +LPG +TP + + + L LKR +PE
Sbjct: 178 GARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPE 225
Score = 159 bits (404), Expect = 1e-45
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 349 SGSIINIGSIVGQM-GNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
GS+ S VG G G + YAA+KAG+ +++A+E+ GIR N +LPG +TP
Sbjct: 137 GGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPA 196
Query: 408 TTCV----PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+ + L KR +PEEI E +LASD +S++TG + GG
Sbjct: 197 NFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGA 253
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 165 bits (421), Expect = 9e-49
Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 12/166 (7%)
Query: 174 THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 233
+ + D+++ + A + E P ++++CAG T + ++V + N
Sbjct: 50 AVIGIVADLAHHEDVDVAFAAAVEWGGLP-ELVLHCAGTGEFGPVGVYTAEQIRRVMESN 108
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
L T LV+Q + + E G + N+ S Q+G +S Y A+K G+ F +S+ E+
Sbjct: 109 LVSTILVAQQTVRLIGE--RGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAEL 166
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+R + P I + + + F PE
Sbjct: 167 KDSPLRLVNLYPSGIRSEFWDNTDH---------VDPSGFMTPEDA 203
Score = 163 bits (414), Expect = 9e-48
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 12/164 (7%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
+ + D+++ + A +A E P ++++CAG T + ++V + N
Sbjct: 50 AVIGIVADLAHHEDVDVAFAAAVEWGGLP-ELVLHCAGTGEFGPVGVYTAEQIRRVMESN 108
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
L T LV+Q + + E G + N+ S Q+G +S Y A+K G+ F +S+ E+
Sbjct: 109 LVSTILVAQQTVRLIGE--RGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAEL 166
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+R + P I + + + F PE
Sbjct: 167 KDSPLRLVNLYPSGIRSEFWDNTDH---------VDPSGFMTPE 201
Score = 124 bits (315), Expect = 2e-33
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+ G + N+ S Q+G +S Y A+K G+ F +S+ E+ +R + P I +
Sbjct: 125 ERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSE 184
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICF-LASDRSSYITGTLIKVTGG 459
+ F PE+ + L + S ++T I G
Sbjct: 185 FWDNTDH---------VDPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRNEG 229
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 166 bits (422), Expect = 1e-48
Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 234
+ D++ S + ++ + + + LV AG+ ++ +++++D+N
Sbjct: 53 FYVVGDITEDSVLKQLVNAAVKGHGKI-DSLVANAGVLEPVQNVNEIDVNAWKKLYDINF 111
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
+ EL K++G+++ + S M Y ++KA + F ++A E
Sbjct: 112 FSIVSLVGIALPELK--KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER 169
Query: 295 TFGIRCNVILPGFIETPMTTSVPDKVK---------ETFTRLIPLKRFGKPEAV 339
++ + PG ++T M ++ + V + F L +
Sbjct: 170 --QVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVP 221
Score = 163 bits (415), Expect = 1e-47
Identities = 30/178 (16%), Positives = 73/178 (41%), Gaps = 7/178 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 67
+ D++ S + ++A + + + LV AG+ ++ +++++D+N
Sbjct: 53 FYVVGDITEDSVLKQLVNAAVKGHGKI-DSLVANAGVLEPVQNVNEIDVNAWKKLYDINF 111
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
+ EL K++G+++ + S M Y ++KA + F ++A E
Sbjct: 112 FSIVSLVGIALPELK--KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER 169
Query: 128 TFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNT 185
++ + PG ++T M ++ + V + LK F + ++ L +
Sbjct: 170 --QVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLD-SSVPATV 224
Score = 138 bits (350), Expect = 3e-38
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
K++G+++ + S M Y ++KA + F ++A E ++ + PG ++T
Sbjct: 127 KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER--QVKAIAVAPGIVDTD 184
Query: 407 MTTCVPDKVK---------ETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLIKV 456
M + + V + F L + V LA + G +
Sbjct: 185 MQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSY 244
Query: 457 TGGL 460
Sbjct: 245 NDPA 248
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 164 bits (417), Expect = 7e-48
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNL 234
L + + I + R + +++ AG+ D + + + +Q V VN+
Sbjct: 67 FILDLLTCTSENCQQLAQRIAVNYPRL-DGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNV 125
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
TF+++QA+ L+++ + GS++ S VG+ G YAA+K E + +A E
Sbjct: 126 NATFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ 184
Query: 295 TFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+R N I PG T M + ++ P +
Sbjct: 185 Q-RLRVNCINPGGTRTAMR--------ASAFPTEDPQKLKTPADI 220
Score = 161 bits (409), Expect = 1e-46
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNL 67
L + + I + R + +++ AG+ D + + + +Q V VN+
Sbjct: 67 FILDLLTCTSENCQQLAQRIAVNYPRL-DGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNV 125
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
TF+++QA+ L+++ + GS++ S VG+ G YAA+K E + +A E
Sbjct: 126 NATFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ 184
Query: 128 TFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+R N I PG T M + + ++ P
Sbjct: 185 Q-RLRVNCINPGGTRTAM--------RASAFPTEDPQKLKTPA 218
Score = 143 bits (364), Expect = 3e-40
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+GS++ S VG+ G YAA+K E + +A E +R N I PG T M
Sbjct: 144 AGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRTAMR 202
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
+ ++ P +I + +L D S TG G
Sbjct: 203 --------ASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPG 245
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 163 bits (415), Expect = 1e-47
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 234
++L ++ + + ++ +F R + L++ A I +L ++DF QV VN+
Sbjct: 69 IALNLENATAQQYRELAARVEHEFGRL-DGLLHNASIIGPRTPLEQLPDEDFMQVMHVNV 127
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM- 293
TF++++A+ L ++ SI S VG+ G Y +K E +++A E+
Sbjct: 128 NATFMLTRALLPLLKRSED-ASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELE 186
Query: 294 ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+R N I PG T M + + PL PE +
Sbjct: 187 GVTAVRANSINPGATRTGMR-------AQAYPDENPLNN-PAPEDI 224
Score = 159 bits (406), Expect = 3e-46
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNW-FLKLTEKDFQQVFDVNL 67
++L ++ + + ++ +F R + L++ A I +L ++DF QV VN+
Sbjct: 69 IALNLENATAQQYRELAARVEHEFGRL-DGLLHNASIIGPRTPLEQLPDEDFMQVMHVNV 127
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM- 126
TF++++A+ L ++ SI S VG+ G Y +K E +++A E+
Sbjct: 128 NATFMLTRALLPLLKRSED-ASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELE 186
Query: 127 ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+R N I PG T M + + PL PE
Sbjct: 187 GVTAVRANSINPGATRTGM-------RAQAYPDENPLNN-PAPE 222
Score = 137 bits (347), Expect = 9e-38
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPM 407
SI S VG+ G Y +K E +++A E+ +R N I PG T M
Sbjct: 146 DASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM 205
Query: 408 TTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
+ + P PE+I V +L S+ I G +
Sbjct: 206 R-------AQAYPDENPLNN-PAPEDIMPVYLYLMGPDSTGINGQAL 244
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 162 bits (413), Expect = 7e-47
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI-TRDNWFLKLTEKDFQQVFDVNL 67
+ LP D+S+ + + N+LVN +T + ++ F +N+
Sbjct: 100 VLLPGDLSDEQHCKDIVQETVRQLGSL-NILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
F V++A L K IIN SIV GN +Y+ATK + AFT+S++ +
Sbjct: 159 FSYFHVTKAALSHL---KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLV 215
Query: 128 TFGIRCNVILPGFIETPMITSV-PDKVKETFTRLIPLKRFGKPE 170
GIR N + PG I TP+I S +K F +P++R G+P
Sbjct: 216 QKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPY 259
Score = 162 bits (412), Expect = 1e-46
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI-TRDNWFLKLTEKDFQQVFDVNL 234
+ LP D+S+ + + N+LVN +T + ++ F +N+
Sbjct: 100 VLLPGDLSDEQHCKDIVQETVRQLGSL-NILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
F V++A L K IIN SIV GN +Y+ATK + AFT+S++ +
Sbjct: 159 FSYFHVTKAALSHL---KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLV 215
Query: 295 TFGIRCNVILPGFIETPMTTSV-PDKVKETFTRLIPLKRFGKPE 337
GIR N + PG I TP+ S +K F +P++R G+P
Sbjct: 216 QKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPY 259
Score = 151 bits (385), Expect = 1e-42
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
K IIN SIV GN +Y+ATK + AFT+S++ + GIR N + PG I TP
Sbjct: 173 KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTP 232
Query: 407 MTTCV-PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+ +K F +P +R G+P E+ +LAS SSY+TG +I V GG+
Sbjct: 233 LIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGV 287
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 161 bits (410), Expect = 1e-46
Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 37/233 (15%)
Query: 120 KSVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLP 179
K++A + G NV++ G E + V ET +K + +
Sbjct: 24 KAIATSLVAEG--ANVLINGRRE--------ENVNET------IKEIRAQYPDAILQPVV 67
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFL 239
D+ + EK+ + ++L+N GI + + ++D+ ++F+VN+
Sbjct: 68 ADLGTEQGCQDVI----EKYPKV-DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVR 122
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
++++ K+++E + G +I I S M + ++Y+ATK + ++S+A +
Sbjct: 123 LTRSYLKKMIE-RKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVT 181
Query: 300 CNVILPGFIETPMT------------TSVPDKVKETFTRL---IPLKRFGKPE 337
N I+PG T ++ + K ++R +PE
Sbjct: 182 VNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPE 234
Score = 158 bits (403), Expect = 1e-45
Identities = 33/184 (17%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Query: 2 LTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQ 61
+ + D+ + EK+ + ++L+N GI + + ++D+ +
Sbjct: 57 QYPDAILQPVVADLGTEQGCQ----DVIEKYPKV-DILINNLGIFEPVEYFDIPDEDWFK 111
Query: 62 VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 121
+F+VN+ ++++ K+++E + G +I I S M + ++Y+ATK + ++S
Sbjct: 112 LFEVNIMSGVRLTRSYLKKMIE-RKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRS 170
Query: 122 VAMEMATFGIRCNVILPGFIETPMI------------TSVPDKVKETFTRL---IPLKRF 166
+A + N I+PG T + ++ + K ++R
Sbjct: 171 LAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRL 230
Query: 167 GKPE 170
+PE
Sbjct: 231 IRPE 234
Score = 146 bits (372), Expect = 3e-41
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G +I I S M + ++Y+ATK + ++S+A + N I+PG T
Sbjct: 136 EGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGV 195
Query: 409 -----------TCVPDKVKETFTR----LIPFKRFGKPEEIGEVICFLASDRSSYITGTL 453
++ ++ F + +R +PEEI ++ FL+S SS I G+
Sbjct: 196 ETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSA 255
Query: 454 IKVTGGL 460
+++ GGL
Sbjct: 256 LRIDGGL 262
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 160 bits (408), Expect = 1e-46
Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ D+ + +K + LV+ A + RD + ++ D+N+
Sbjct: 53 IESDIVKEVLEEGGVDKLKN-LDHV-DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVP 110
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+S+ + L +SG +I I S G + G + YAA+K + + E A G
Sbjct: 111 AELSRQLLPALRA--ASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNG 168
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
IR + + PG TPM + D F I + +P+ +
Sbjct: 169 IRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYI----EPKEI 206
Score = 159 bits (404), Expect = 5e-46
Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 27/198 (13%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ D+ + +K + LV+ A + RD + ++ D+N+
Sbjct: 53 IESDIVKEVLEEGGVDKLKN-LDHV-DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVP 110
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+S+ + L +SG +I I S G + G + YAA+K + + E A G
Sbjct: 111 AELSRQLLPALRA--ASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNG 168
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTIST 190
IR + + PG TPM+ + D F I ++ P +++N I
Sbjct: 169 IRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIE--------------PKEIAN--AIRF 212
Query: 191 AMSTIKEKFSRPPNVLVN 208
+ +
Sbjct: 213 VI-------DAGETTQIT 223
Score = 114 bits (287), Expect = 2e-29
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
SG +I I S G + G + YAA+K + + E A GIR + + PG TPM
Sbjct: 125 SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPML 184
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASD-RSSYITGTLI 454
+ D F I +P+EI I F+ ++ IT +
Sbjct: 185 QGLMDSQGTNFRPEIY----IEPKEIANAIRFVIDAGETTQITNVDV 227
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 160 bits (408), Expect = 2e-46
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV + ++S A+ ++ R +++V AGI + + + V DVNL G +
Sbjct: 82 DVRDRESLSAALQAGLDELGRL-DIVVANAGIAP----MSAGDDGWHDVIDVNLTGVYHT 136
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMG----NMGQSNYAATKAGVEAFTKSVAMEMATF 296
+ LV+ + GSI+ I S G G + G Y A K GV + A +A
Sbjct: 137 IKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQ 196
Query: 297 GIRCNVILPGFIETPMTTS-----------VPDKVKETFTRLIPLKRFGKPEAV 339
IR N I P +ETPM + +P+ PE V
Sbjct: 197 MIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPV-EVLAPEDV 249
Score = 160 bits (407), Expect = 3e-46
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 31/186 (16%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV + ++S A+ A ++ R +++V AGI + + + V DVNL G +
Sbjct: 82 DVRDRESLSAALQAGLDELGRL-DIVVANAGIAP----MSAGDDGWHDVIDVNLTGVYHT 136
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMG----NMGQSNYAATKAGVEAFTKSVAMEMATF 129
+ LV+ + GSI+ I S G G + G Y A K GV + A +A
Sbjct: 137 IKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQ 196
Query: 130 GIRCNVILPGFIETPMITS-----------VPDKVKETFTRLIPLKRFGKPEGSSTHLSL 178
IR N I P +ETPMI + +P+ PE
Sbjct: 197 MIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPV-EVLAPE-------- 247
Query: 179 PMDVSN 184
DV+N
Sbjct: 248 --DVAN 251
Score = 149 bits (378), Expect = 5e-42
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 16/138 (11%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMG----NMGQSNYAATKAGVEAFTKSVAMEMATFGI 393
LV+ + GSI+ I S G G + G Y A K GV + A +A I
Sbjct: 139 VAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMI 198
Query: 394 RCNVILPGFIETPMT-----------TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLA 442
R N I P +ETPM +P PE++ + +L
Sbjct: 199 RVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLV 257
Query: 443 SDRSSYITGTLIKVTGGL 460
SD++ YITG + V G
Sbjct: 258 SDQARYITGVTLPVDAGF 275
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 159 bits (405), Expect = 4e-46
Identities = 41/192 (21%), Positives = 61/192 (31%), Gaps = 14/192 (7%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQ 228
E + S + S I + + I K + + V AG N K +
Sbjct: 56 ENPNADHSFTIKDSGEEEIKSVIEKINSKSIKV-DTFVCAAGGWSGGNASSDEFLKSVKG 114
Query: 229 VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 288
+ D+NL F + K L G + G+ G Y ATKA K
Sbjct: 115 MIDMNLYSAFASAHIGAKLL---NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKD 171
Query: 289 VAMEMATF--GIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELVET 346
+A E G ILP ++TP F PL E + + +
Sbjct: 172 LASENGGLPAGSTSLGILPVTLDTPTNRKYMS--DANFDDWTPLSEVA--EKLFEWSTNS 227
Query: 347 KSS---GSIINI 355
S GS++
Sbjct: 228 DSRPTNGSLVKF 239
Score = 158 bits (401), Expect = 1e-45
Identities = 36/163 (22%), Positives = 51/163 (31%), Gaps = 9/163 (5%)
Query: 10 SLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLK 68
S + S I + + I K + + V AG N K + + D+NL
Sbjct: 63 SFTIKDSGEEEIKSVIEKINSKSIKV-DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLY 121
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F + K L G + G+ G Y ATKA K +A E
Sbjct: 122 SAFASAHIGAKLL---NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGG 178
Query: 129 F--GIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKP 169
G ILP ++TP F PL +
Sbjct: 179 LPAGSTSLGILPVTLDTPTNRKYMS--DANFDDWTPLSEVAEK 219
Score = 132 bits (333), Expect = 7e-36
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF--GIRCNVILPGFIE 404
G + G+ G Y ATKA K +A E G ILP ++
Sbjct: 135 NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLD 194
Query: 405 TPMTTCVPDKVKETFTRLIPFKRFGKPEEIGE-VICFLASDRSSYITGTLIKVTGG 459
TP F + E+ E + + + S G+L+K
Sbjct: 195 TPTNRKYMSDA--------NFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETK 242
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 159 bits (405), Expect = 7e-46
Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 14/167 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L+L D+ + A++ + F ++LVN A L K F + VN +
Sbjct: 65 LALKCDIREEDQVRAAVAATVDTFGGI-DILVNNASAIWLRGTLDTPMKRFDLMQQVNAR 123
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEM 293
G+F+ +QA L++ + I+ + + Y K G+ T +A E
Sbjct: 124 GSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEF 182
Query: 294 ATFGIRCNVILPG-FIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
G+ N + P I T +P + +PE +
Sbjct: 183 GPQGVAINALWPRTVIATDAINMLPG---------VDAAACRRPEIM 220
Score = 158 bits (401), Expect = 3e-45
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 14/165 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L+L D+ + A++A + F ++LVN A L K F + VN +
Sbjct: 65 LALKCDIREEDQVRAAVAATVDTFGGI-DILVNNASAIWLRGTLDTPMKRFDLMQQVNAR 123
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEM 126
G+F+ +QA L++ + I+ + + Y K G+ T +A E
Sbjct: 124 GSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEF 182
Query: 127 ATFGIRCNVILPG-FIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
G+ N + P I T I +P + +PE
Sbjct: 183 GPQGVAINALWPRTVIATDAINMLPG---------VDAAACRRPE 218
Score = 122 bits (309), Expect = 4e-32
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 13/127 (10%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGN--MGQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
A L++ + I+ + + Y K G+ T +A E G+
Sbjct: 131 ACLPHLLQAPN-PHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAI 189
Query: 396 NVILPG-FIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
N + P I T +P + +PE + + + + ++ G +
Sbjct: 190 NALWPRTVIATDAINMLPG---------VDAAACRRPEIMADAAHAVLTREAAGFHGQFL 240
Query: 455 KVTGGLA 461
LA
Sbjct: 241 IDDEVLA 247
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 160 bits (407), Expect = 9e-46
Identities = 52/164 (31%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
+V++ + + T E F +VLVN AGI RD +E++F V V+LKG F
Sbjct: 94 NVADWDQAAGLIQTAVETFGGL-DVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFAT 152
Query: 241 SQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
+ G IIN S G G++GQ NY+A KAG+ T A EM
Sbjct: 153 MRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGR 212
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
+G+ N I P T MT +V E PE V
Sbjct: 213 YGVTVNAIAPS-ARTRMTETVFA---EMMATQDQDFDAMAPENV 252
Score = 155 bits (393), Expect = 1e-43
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
+V++ + + E F +VLVN AGI RD +E++F V V+LKG F
Sbjct: 94 NVADWDQAAGLIQTAVETFGGL-DVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFAT 152
Query: 74 SQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+ G IIN S G G++GQ NY+A KAG+ T A EM
Sbjct: 153 MRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGR 212
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
+G+ N I P T M +V E PE
Sbjct: 213 YGVTVNAIAPS-ARTRMTETVFA---EMMATQDQDFDAMAPE 250
Score = 127 bits (322), Expect = 1e-33
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G IIN S G G++GQ NY+A KAG+ T A EM +G+ N I P T MT
Sbjct: 171 DGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMT 229
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
V E PE + ++ +L S + +TG + +V GG
Sbjct: 230 ETVFA---EMMATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGG 277
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 156 bits (396), Expect = 8e-45
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 13/172 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTI-KEKFSRPPNVLVNCAGI-------TRDNWFLKLTEKDFQ 227
+ + D S S + + + +E+ R +VLVN A TR+ F + +
Sbjct: 57 VPVVCDSSQESEVRSLFEQVDREQQGRL-DVLVNNAYAGVQTILNTRNKAFWETPASMWD 115
Query: 228 QVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 287
+ +V L+G + S + +V G I+ I S + M Y KA +
Sbjct: 116 DINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGS-LQYMFNVPYGVGKAACDKLAA 173
Query: 288 SVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A E+ G+ C + PG ++T + KE + LK+F +
Sbjct: 174 DCAHELRRHGVSCVSLWPGIVQTELLKEHM--AKEEVLQDPVLKQFKSAFSS 223
Score = 154 bits (391), Expect = 6e-44
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAI-KEKFSRPPNVLVNCAGI-------TRDNWFLKLTEKDFQ 60
+ + D S S + + + +E+ R +VLVN A TR+ F + +
Sbjct: 57 VPVVCDSSQESEVRSLFEQVDREQQGRL-DVLVNNAYAGVQTILNTRNKAFWETPASMWD 115
Query: 61 QVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 120
+ +V L+G + S + +V G I+ I S + M Y KA +
Sbjct: 116 DINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGS-LQYMFNVPYGVGKAACDKLAA 173
Query: 121 SVAMEMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSS 173
A E+ G+ C + PG ++T ++ KE + LK+F S+
Sbjct: 174 DCAHELRRHGVSCVSLWPGIVQTELLKEHM--AKEEVLQDPVLKQFKSAFSSA 224
Score = 128 bits (324), Expect = 2e-34
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ +V G I+ I S + M Y KA + A E+ G+ C
Sbjct: 131 YGARLMVPAGQ-GLIVVISSPGS-LQYMFNVPYGVGKAACDKLAADCAHELRRHGVSCVS 188
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGK-------PEEIGEVICFLASD-RSSYI 449
+ PG ++T + KE + K+F E G+ + LA+D +
Sbjct: 189 LWPGIVQTELLKEHM--AKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSL 246
Query: 450 TGTLIKVTGGLA 461
+G ++ LA
Sbjct: 247 SGKVLPS-CDLA 257
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 156 bits (397), Expect = 1e-44
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNLKGTFL 239
DV + + A+ + E+ R +++V AGI L K +E+D+ ++ D+NL G +
Sbjct: 84 DVRDYDALKAAVDSGVEQLGRL-DIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWK 142
Query: 240 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 299
+A ++ GSII S+ G +Y A K GV ++ +E+ IR
Sbjct: 143 TVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIR 202
Query: 300 CNVILPGFIETPMTTSVPD----------------KVKETFTRLIPLKRFGKPEAV 339
N + P ++TPM + +P+ + +P +
Sbjct: 203 VNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPI-PWVEPIDI 257
Score = 156 bits (397), Expect = 1e-44
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFL-KLTEKDFQQVFDVNLKGTFL 72
DV + + A+ + E+ R +++V AGI L K +E+D+ ++ D+NL G +
Sbjct: 84 DVRDYDALKAAVDSGVEQLGRL-DIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWK 142
Query: 73 VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIR 132
+A ++ GSII S+ G +Y A K GV ++ +E+ IR
Sbjct: 143 TVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIR 202
Query: 133 CNVILPGFIETPMITSVPD----------------KVKETFTRLIPLKRFGKPEGSSTHL 176
N + P ++TPM+ + +P+ + +P
Sbjct: 203 VNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPI-PWVEPI------ 255
Query: 177 SLPMDVSN 184
D+SN
Sbjct: 256 ----DISN 259
Score = 144 bits (366), Expect = 4e-40
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A ++ GSII S+ G +Y A K GV ++ +E+ IR N
Sbjct: 146 AGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNS 205
Query: 398 ILPGFIETPMTTCVPD----------------KVKETFTRLIPFKRFGKPEEIGEVICFL 441
+ P ++TPM +P + +P +I + F
Sbjct: 206 VHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPI-PWVEPIDISNAVLFF 264
Query: 442 ASDRSSYITGTLIKVTGGL 460
ASD + YITG + + G
Sbjct: 265 ASDEARYITGVTLPIDAGS 283
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 155 bits (393), Expect = 2e-44
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+G + Q G YA +K V + ++ A G+R NV+ PG +ETP+
Sbjct: 133 AGDEARAIELAEQQGQ-THLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL 191
Query: 409 TCV---PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
P + T + P R +P E+ E I FL ++S+I G+++ V GG+
Sbjct: 192 QASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGM 246
Score = 152 bits (386), Expect = 2e-43
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 7/138 (5%)
Query: 205 VLVNCAGITR--DNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGS 262
V VN G++ D L+ V A + + G
Sbjct: 83 VAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLA-GDEARAIE 141
Query: 263 IVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSV---PDK 319
+ Q G YA +K V + ++ A G+R NV+ PG +ETP+ + P
Sbjct: 142 LAEQQGQ-THLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRY 200
Query: 320 VKETFTRLIPLKRFGKPE 337
+ T + PL R +P
Sbjct: 201 GESTRRFVAPLGRGSEPR 218
Score = 150 bits (381), Expect = 1e-42
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 7/138 (5%)
Query: 38 VLVNCAGITR--DNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGS 95
V VN G++ D L+ V A + + G
Sbjct: 83 VAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLA-GDEARAIE 141
Query: 96 IVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSV---PDK 152
+ Q G YA +K V + ++ A G+R NV+ PG +ETP++ + P
Sbjct: 142 LAEQQGQ-THLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRY 200
Query: 153 VKETFTRLIPLKRFGKPE 170
+ T + PL R +P
Sbjct: 201 GESTRRFVAPLGRGSEPR 218
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 155 bits (394), Expect = 3e-44
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 34/198 (17%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +DV + + +S ++ +F + +V+V AGI L + F FDV+
Sbjct: 74 YTAEVDVRDRAAVSRELANAVAEFGKL-DVVVANAGICPLGA--HLPVQAFADAFDVDFV 130
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-----------GQSNYAATKAGVEA 117
G A L SII GS+ G + G + Y+ K V++
Sbjct: 131 GVINTVHAALPYLTS---GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDS 187
Query: 118 FTKSVAMEMATFGIRCNVILPGFIETPMITSVP-----------DKVKETFTRLIPLKRF 166
+T +A ++A IR NVI P + T M+ S P + ++
Sbjct: 188 YTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAM 247
Query: 167 GKPEGSSTHLSLPMDVSN 184
P D+SN
Sbjct: 248 PTPYVE------ASDISN 259
Score = 151 bits (384), Expect = 8e-43
Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 32/190 (16%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ +DV + + +S ++ +F + +V+V AGI L + F FDV+
Sbjct: 74 YTAEVDVRDRAAVSRELANAVAEFGKL-DVVVANAGICPLGA--HLPVQAFADAFDVDFV 130
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-----------GQSNYAATKAGVEA 284
G A L SII GS+ G + G + Y+ K V++
Sbjct: 131 GVINTVHAALPYLTS---GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDS 187
Query: 285 FTKSVAMEMATFGIRCNVILPGFIETPMTTSVP-----------DKVKETFTRLIPLKR- 332
+T +A ++A IR NVI P + T M S P + ++
Sbjct: 188 YTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAM 247
Query: 333 ---FGKPEAV 339
+ + +
Sbjct: 248 PTPYVEASDI 257
Score = 139 bits (352), Expect = 3e-38
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 350 GSIINIGSIVGQMGNM-----------GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVI 398
SII GS+ G + G + Y+ K V+++T +A ++A IR NVI
Sbjct: 147 ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVI 206
Query: 399 LPGFIETPMTTCVP-----------DKVKETFTRLIPFKR----FGKPEEIGEVICFLAS 443
P + T M P + + + + +I +CFLAS
Sbjct: 207 HPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFLAS 266
Query: 444 DRSSYITGTLIKVTGGL 460
D S Y+TG KV G
Sbjct: 267 DESRYVTGLQFKVDAGA 283
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 153 bits (388), Expect = 2e-43
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI--TRDNWFLKLTEKDFQQVFDVNLKGTF 238
DV+ + + T K + +++ G+ T L+ +DF++V D+N+ G F
Sbjct: 72 DVTKDEDVRNLVDTTIAKHGKL-DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 239 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSN-YAATKAGVEAFTKSVAMEMATFG 297
LV++ + ++ K GSI+ SI G S+ Y ATK V T S+ E+ +G
Sbjct: 131 LVAKHAARVMIPAKK-GSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYG 189
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRL-----IPLKRFGKPE 337
IR N + P + +P+ T V L + E
Sbjct: 190 IRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAE 234
Score = 152 bits (386), Expect = 4e-43
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI--TRDNWFLKLTEKDFQQVFDVNLKGTF 71
DV+ + + K + +++ G+ T L+ +DF++V D+N+ G F
Sbjct: 72 DVTKDEDVRNLVDTTIAKHGKL-DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 72 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSN-YAATKAGVEAFTKSVAMEMATFG 130
LV++ + ++ K GSI+ SI G S+ Y ATK V T S+ E+ +G
Sbjct: 131 LVAKHAARVMIPAKK-GSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYG 189
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRL-----IPLKRFGKPE 170
IR N + P + +P++T V L + E
Sbjct: 190 IRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAE 234
Score = 141 bits (357), Expect = 7e-39
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 349 SGSIINIGSIVGQMGNMGQSN-YAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
GSI+ SI G S+ Y ATK V T S+ E+ +GIR N + P + +P+
Sbjct: 145 KGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPL 204
Query: 408 TTCVPDKVKETFTRL-----IPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
T V L + E++ + + +LA D S Y++G + + GG
Sbjct: 205 LTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 262
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 150 bits (382), Expect = 2e-42
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI-TRDNWFLKLTEKDFQQVFDVNL 234
+ LP D+S+ S + + +E ++L AG T LT + FQQ F VN+
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGL-DILALVAGKQTAIPEIKDLTSEQFQQTFAVNV 161
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
F ++Q L SII SI + +YAATKA + +++ +A ++A
Sbjct: 162 FALFWITQEAIPLL---PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA 218
Query: 295 TFGIRCNVILPGFIETPM--TTSVPDKVKETFTRLIPLKRFGKPE 337
GIR N++ PG I T + + F + P+KR G+P
Sbjct: 219 EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPA 263
Score = 149 bits (379), Expect = 6e-42
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI-TRDNWFLKLTEKDFQQVFDVNL 67
+ LP D+S+ S + + +E ++L AG T LT + FQQ F VN+
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGL-DILALVAGKQTAIPEIKDLTSEQFQQTFAVNV 161
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
F ++Q L SII SI + +YAATKA + +++ +A ++A
Sbjct: 162 FALFWITQEAIPLL---PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA 218
Query: 128 TFGIRCNVILPGFIETPMI--TSVPDKVKETFTRLIPLKRFGKPE 170
GIR N++ PG I T + F + P+KR G+P
Sbjct: 219 EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPA 263
Score = 144 bits (365), Expect = 7e-40
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
SII SI + +YAATKA + +++ +A ++A GIR N++ PG I T
Sbjct: 176 PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTA 235
Query: 407 MTTC--VPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
+ F + P KR G+P E+ V +LAS SSY+T + V GG
Sbjct: 236 LQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 149 bits (379), Expect = 2e-42
Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 14/203 (6%)
Query: 164 KRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKF---SRPPNVLVNCAGITRDNWFLK 220
+ G + + D+ + + +S ++E +L+N A D
Sbjct: 51 EELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGF 110
Query: 221 LTEKD---FQQVFDVNLKGTFLVSQAVCKELVETK-SSGSIINIGSIVGQMGNMGQSNYA 276
L D + +NL ++ ++ S +++NI S+ G Y
Sbjct: 111 LNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYC 170
Query: 277 ATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDK-----VKETFTRLIPLK 331
A KA + + +A E +R PG ++ M + ++ +L
Sbjct: 171 AGKAARDMLYQVLAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDG 228
Query: 332 RFGKPEAVCKELVETKSSGSIIN 354
++L+ + +
Sbjct: 229 ALVDCGTSAQKLLGLLQKDTFQS 251
Score = 144 bits (364), Expect = 3e-40
Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 14/174 (8%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKF---SRPPNVLVNCAGITRDNWFLKLTEKD---FQQV 62
+ D+ + + +SA++E +L+N A D L D
Sbjct: 63 VLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNY 122
Query: 63 FDVNLKGTFLVSQAVCKELVETK-SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKS 121
+ +NL ++ ++ S +++NI S+ G Y A KA + +
Sbjct: 123 WALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQV 182
Query: 122 VAMEMATFGIRCNVILPGFIETPMITSVPDK-----VKETFTRLIPLKRFGKPE 170
+A E +R PG ++ M + ++ +L
Sbjct: 183 LAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCG 234
Score = 118 bits (297), Expect = 1e-30
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 338 AVCKELVETK-SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
++ S +++NI S+ G Y A KA + + +A E +R
Sbjct: 136 GTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAEEP--SVRVL 193
Query: 397 VILPGFIETPMTTCVPDK-----VKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITG 451
PG ++ M + ++ +L + + L ++ +G
Sbjct: 194 SYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK-DTFQSG 252
Query: 452 TLIKV 456
+
Sbjct: 253 AHVDF 257
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 149 bits (379), Expect = 5e-42
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 11/166 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L + D+ + ++ A++ E+F ++ VN A ++ K F + + ++
Sbjct: 68 LPIVGDIRDGDAVAAAVAKTVEQFGGI-DICVNNASAINLGSIEEVPLKRFDLMNGIQVR 126
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMA 294
GT+ VSQ+ + + I+ + + + Y K G+ +A E+
Sbjct: 127 GTYAVSQSCIPHMKGRD-NPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELR 185
Query: 295 TFGIRCNVILPG-FIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
GI N + P + T V+ + R KPE
Sbjct: 186 DAGIASNTLWPRTTVATAA-------VQNLLGGDEAMARSRKPEVY 224
Score = 149 bits (378), Expect = 8e-42
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 11/164 (6%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L + D+ + ++ A++ E+F ++ VN A ++ K F + + ++
Sbjct: 68 LPIVGDIRDGDAVAAAVAKTVEQFGGI-DICVNNASAINLGSIEEVPLKRFDLMNGIQVR 126
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMA 127
GT+ VSQ+ + + I+ + + + Y K G+ +A E+
Sbjct: 127 GTYAVSQSCIPHMKGRD-NPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELR 185
Query: 128 TFGIRCNVILPG-FIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
GI N + P + T V+ + R KPE
Sbjct: 186 DAGIASNTLWPRTTVATAA-------VQNLLGGDEAMARSRKPE 222
Score = 112 bits (282), Expect = 2e-28
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 349 SGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPG-FIETP 406
+ I+ + + + Y K G+ +A E+ GI N + P + T
Sbjct: 144 NPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA 203
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGLAT 462
V+ R KPE + + + SSY TL+ L
Sbjct: 204 A-------VQNLLGGDEAMARSRKPEVYADAAYVVLNKPSSYTGNTLL-CEDVLLE 251
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 145 bits (368), Expect = 2e-41
Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 15/178 (8%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
+ +D++N +I + + +V+ G + +LT + L G
Sbjct: 39 VTVDITNIDSIKKMYEQV-----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
+ L + GS I+ + + ++ A V AF KS A+EM G
Sbjct: 94 INLVLLGIDSLND---KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-G 149
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELVETKSSGSIINI 355
IR N + P +E P +P + + + V +G +
Sbjct: 150 IRINTVSPNVLEESWDKLEPFFEG---FLPVPAAKVARAFE---KSVFGAQTGESYQV 201
Score = 140 bits (354), Expect = 2e-39
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ +D++N +I + + +V+ G + +LT + L G
Sbjct: 39 VTVDITNIDSIKKMYEQV-----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
+ L + GS I+ + + ++ A V AF KS A+EM G
Sbjct: 94 INLVLLGIDSLND---KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-G 149
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSS 173
IR N + P +E P +P + + S
Sbjct: 150 IRINTVSPNVLEESWDKLEPFFEG---FLPVPAAKVARAFEKS 189
Score = 97.3 bits (243), Expect = 1e-23
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 350 GSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTT 409
GS I+ + + ++ A V AF KS A+EM GIR N + P +E
Sbjct: 108 GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRINTVSPNVLEESW-- 164
Query: 410 CVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKV 456
+L PF P +V TG +V
Sbjct: 165 ----------DKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQV 201
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 149 bits (377), Expect = 2e-41
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 182 VSNTSTISTAMSTIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 238
V+N ++ +K + F R +V+VN AGI RD F +++++D+ + V+L+G+F
Sbjct: 70 VANYDSVEAGEKLVKTALDTFGRI-DVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF 128
Query: 239 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 298
V++A + + ++ G II S G GN GQ+NY+A K G+ ++ +E I
Sbjct: 129 QVTRAAWDHMKK-QNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNI 187
Query: 299 RCNVILPGFIETPMTTSVPDKVKETFTRLIP 329
CN I P + MT +V ++ L P
Sbjct: 188 HCNTIAPNAG-SRMTETVMP--EDLVEALKP 215
Score = 146 bits (371), Expect = 2e-40
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 15 VSNTSTISTAMSAIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 71
V+N ++ +K + F R +V+VN AGI RD F +++++D+ + V+L+G+F
Sbjct: 70 VANYDSVEAGEKLVKTALDTFGRI-DVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF 128
Query: 72 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 131
V++A + + ++ G II S G GN GQ+NY+A K G+ ++ +E I
Sbjct: 129 QVTRAAWDHMKK-QNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNI 187
Query: 132 RCNVILPGFIETPMITSVPDKVKETFTRLIP 162
CN I P + M +V ++ L P
Sbjct: 188 HCNTIAPNAG-SRMTETVMP--EDLVEALKP 215
Score = 107 bits (269), Expect = 3e-26
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
++ G II S G GN GQ+NY+A K G+ ++ +E I CN I P +
Sbjct: 141 QNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SR 199
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
MT V ++ L KPE + ++ +L + S G L +V G
Sbjct: 200 MTETVMP--EDLVEAL-------KPEYVAPLVLWLCHE-SCEENGGLFEVGAG 242
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 153 bits (388), Expect = 7e-41
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 182 VSNTSTISTAMSTIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 238
V++ + + ++ + F +V++N AGI RD K+TEKD++ V DV+L G F
Sbjct: 69 VADYNNVLDGDKIVETAVKNFGTV-HVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAF 127
Query: 239 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 298
V++A + + G I+N S G GN GQ+NYA+ K+ + F +++A E A + I
Sbjct: 128 AVTKAAWPYFQK-QKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNI 186
Query: 299 RCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELV-----ETKSSGSII 353
+ N I P + MT S+ P+ PE V ++ E + +G
Sbjct: 187 KANAIAP-LARSRMTESIMPP---------PMLEKLGPEKVAPLVLYLSSAENELTGQFF 236
Query: 354 NIG 356
+
Sbjct: 237 EVA 239
Score = 150 bits (381), Expect = 7e-40
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 15 VSNTSTISTAMSAIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 71
V++ + + ++ + F +V++N AGI RD K+TEKD++ V DV+L G F
Sbjct: 69 VADYNNVLDGDKIVETAVKNFGTV-HVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAF 127
Query: 72 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 131
V++A + + G I+N S G GN GQ+NYA+ K+ + F +++A E A + I
Sbjct: 128 AVTKAAWPYFQK-QKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNI 186
Query: 132 RCNVILPGFIETPMITSVPDKVKETFTRLIP 162
+ N I P + M S+ +L P
Sbjct: 187 KANAIAP-LARSRMTESIMP--PPMLEKLGP 214
Score = 148 bits (375), Expect = 4e-39
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 16/152 (10%)
Query: 188 ISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKE 247
I + +K+ ++LVN AGI RD F K++++++ V V+L GTF +S+
Sbjct: 386 IKNVI----DKYGTI-DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPY 440
Query: 248 LVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGF 307
VE K G IINI S G GN GQ+NY+++KAG+ +K++A+E A I+ N++ P
Sbjct: 441 FVE-KQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP-H 498
Query: 308 IETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
ET MT S+ + K + V
Sbjct: 499 AETAMTLSIMRE---------QDKNLYHADQV 521
Score = 144 bits (366), Expect = 6e-38
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 15 VSNTSTISTAMSAI----KEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+ ++ AI +K+ ++LVN AGI RD F K++++++ V V+L GT
Sbjct: 372 WPDQHDVAKDSEAIIKNVIDKYGTI-DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGT 430
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
F +S+ VE K G IINI S G GN GQ+NY+++KAG+ +K++A+E A
Sbjct: 431 FNLSRLAWPYFVE-KQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNN 489
Query: 131 IRCNVILPGFIETPMITSVPDK 152
I+ N++ P ET M S+ +
Sbjct: 490 IKVNIVAP-HAETAMTLSIMRE 510
Score = 113 bits (285), Expect = 3e-27
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+ G I+N S G GN GQ+NYA+ K+ + F +++A E A + I+ N I P +
Sbjct: 140 QKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAP-LARSR 198
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
MT + P PE++ ++ +L+S + +TG +V G
Sbjct: 199 MTESIMPP---------PMLEKLGPEKVAPLVLYLSSA-ENELTGQFFEVAAGF 242
Score = 111 bits (279), Expect = 2e-26
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
K G IINI S G GN GQ+NY+++KAG+ +K++A+E A I+ N++ P ET
Sbjct: 444 KQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP-HAETA 502
Query: 407 MTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
MT + + K +++ ++ +L +D +TG ++ GG
Sbjct: 503 MTLSIMRE---------QDKNLYHADQVAPLLVYLGTD-DVPVTGETFEIGGG 545
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 140 bits (356), Expect = 5e-39
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 342 ELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILP 400
L +G +IV G G YA +K + + A G+R N I P
Sbjct: 126 PLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAP 185
Query: 401 GFIETPMTTCV---PDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVT 457
G ETP+ P + + P R +P E+ VI FL S +SY+ G I +
Sbjct: 186 GATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVID 245
Query: 458 GGL 460
GG+
Sbjct: 246 GGI 248
Score = 130 bits (330), Expect = 2e-35
Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 39/190 (20%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D+S A++ + K S+ + LV CAG+ K V VN G +
Sbjct: 41 DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-------QTKVLGNVVSVNYFGATEL 93
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQM----------------------------GNMGQ 272
A L + + + I S+ G
Sbjct: 94 MDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN 152
Query: 273 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSV---PDKVKETFTRLIP 329
YA +K + + A G+R N I PG ETP+ + P + + P
Sbjct: 153 LAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPP 212
Query: 330 LKRFGKPEAV 339
+ R +P +
Sbjct: 213 MGRRAEPSEM 222
Score = 130 bits (328), Expect = 4e-35
Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 39/188 (20%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D+S A++ + K S+ + LV CAG+ K V VN G +
Sbjct: 41 DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-------QTKVLGNVVSVNYFGATEL 93
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQM----------------------------GNMGQ 105
A L + + + I S+ G
Sbjct: 94 MDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN 152
Query: 106 SNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSV---PDKVKETFTRLIP 162
YA +K + + A G+R N I PG ETP++ + P + + P
Sbjct: 153 LAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPP 212
Query: 163 LKRFGKPE 170
+ R +P
Sbjct: 213 MGRRAEPS 220
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 142 bits (359), Expect = 6e-39
Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 11/174 (6%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ DV + + +V+ + AGI ++ D++ V D++L
Sbjct: 83 HGVVCDVRHLDEMVRLADEAFRLLGGV-DVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLW 141
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G+ +A L+E + G I S G + N G Y K GV +++A E+
Sbjct: 142 GSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKP 201
Query: 296 FGIRCNVILPGFIETPMTTS----------VPDKVKETFTRLIPLKRFGKPEAV 339
GI +V+ P +ET + ++ + + F L + V
Sbjct: 202 NGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDV 255
Score = 140 bits (356), Expect = 2e-38
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 3/178 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ DV + + +V+ + AGI ++ D++ V D++L
Sbjct: 83 HGVVCDVRHLDEMVRLADEAFRLLGGV-DVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLW 141
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G+ +A L+E + G I S G + N G Y K GV +++A E+
Sbjct: 142 GSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKP 201
Query: 129 FGIRCNVILPGFIETPMI-TSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNT 185
GI +V+ P +ET ++ S + + P FG +S DV+
Sbjct: 202 NGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVS-ADDVARL 258
Score = 94.7 bits (236), Expect = 7e-22
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 337 EAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCN 396
EA L+E + G I S G + N G Y K GV +++A E+ GI +
Sbjct: 148 EAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVS 207
Query: 397 VILPGFIETPMTT----------CVPDKVKETFTRLIPFKRFGKPEEIGEVI 438
V+ P +ET + + + + F L +++ +
Sbjct: 208 VLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLT 259
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 133 bits (337), Expect = 7e-37
Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 10/148 (6%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
LP D+++ A+ E+ ++LV+ G + +++ +L
Sbjct: 47 LPADLAD----ELEAKALLEEAGPL-DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTA 101
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 130
V K K + G+ + G + YAA K +EA+ ++ E+ G
Sbjct: 102 A----FVLKHARFQKG-ARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREG 156
Query: 131 IRCNVILPGFIETPMITSVPDKVKETFT 158
+ ++ + T + + K +
Sbjct: 157 VHLVLVRLPAVATGLWAPLGGPPKGALS 184
Score = 132 bits (334), Expect = 2e-36
Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 237
LP D+++ + E+ ++LV+ G + +++ +L
Sbjct: 47 LPADLAD----ELEAKALLEEAGPL-DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTA 101
Query: 238 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFG 297
V K K + G+ + G + YAA K +EA+ ++ E+ G
Sbjct: 102 A----FVLKHARFQKG-ARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREG 156
Query: 298 IRCNVILPGFIETPMTTSVPDKVKETFT 325
+ ++ + T + + K +
Sbjct: 157 VHLVLVRLPAVATGLWAPLGGPPKGALS 184
Score = 94.9 bits (237), Expect = 8e-23
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
+ G+ + G + YAA K +EA+ ++ E+ G+ ++ + T +
Sbjct: 113 GARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW 172
Query: 409 TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDR 445
+ K + PEE +
Sbjct: 173 APLGGPPKGALS----------PEEAARKVLEGLFRE 199
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 133 bits (338), Expect = 1e-36
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF--GIRCNVILPGFIE 404
K G + G+ G G Y K V +S+A + + G +LP ++
Sbjct: 124 KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLD 183
Query: 405 TPMT-TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
TPM +P+ F + E + E + +G+LI+V
Sbjct: 184 TPMNRKSMPE---------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTT 230
Score = 129 bits (327), Expect = 4e-35
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 14/138 (10%)
Query: 205 VLVNCAG-ITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSI 263
++ AG N K K+ ++ ++ + + S K L K G + G+
Sbjct: 79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHL---KEGGLLTLAGAK 135
Query: 264 VGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF--GIRCNVILPGFIETPMTTSVPDKVK 321
G G Y K V +S+A + + G +LP ++TPM +
Sbjct: 136 AALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE-- 193
Query: 322 ETFTRLIPLKRFGKPEAV 339
+ E +
Sbjct: 194 ------ADFSSWTPLEFL 205
Score = 129 bits (327), Expect = 4e-35
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 15/164 (9%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPP-NVLVNCAG-ITRDNWFLKLTEKDFQQVFDVNLK 68
+ M S T + + + + ++ AG N K K+ ++ ++
Sbjct: 51 VKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIW 110
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
+ + S K L K G + G+ G G Y K V +S+A + +
Sbjct: 111 TSTISSHLATKHL---KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSG 167
Query: 129 F--GIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPE 170
G +LP ++TPM + + E
Sbjct: 168 MPSGAAAIAVLPVTLDTPMNRKSMPE--------ADFSSWTPLE 203
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 134 bits (339), Expect = 9e-36
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 14/167 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L +DV + IS A+ +KF ++LVN A L K + +VN +
Sbjct: 104 LPCIVDVRDEQQISAAVEKAIKKFGGI-DILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAMEM 293
GT+L S+A L ++K I+NI + Y K G+ + +A E
Sbjct: 163 GTYLASKACIPYLKKSK-VAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF 221
Query: 294 ATFGIRCNVILPG-FIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
I N + P I T + E+ R K + +
Sbjct: 222 KG-EIAVNALWPKTAIHTAAMDMLGGPGIESQCR--------KVDII 259
Score = 133 bits (337), Expect = 2e-35
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 6/154 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L +DV + IS A+ +KF ++LVN A L K + +VN +
Sbjct: 104 LPCIVDVRDEQQISAAVEKAIKKFGGI-DILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAMEM 126
GT+L S+A L ++K I+NI + Y K G+ + +A E
Sbjct: 163 GTYLASKACIPYLKKSK-VAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF 221
Query: 127 ATFGIRCNVILPG-FIETPMITSVPDKVKETFTR 159
I N + P I T + + E+ R
Sbjct: 222 KG-EIAVNALWPKTAIHTAAMDMLGGPGIESQCR 254
Score = 89.1 bits (221), Expect = 9e-20
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNM--GQSNYAATKAGVEAFTKSVAMEMATFGIRC 395
A L ++K I+NI + Y K G+ + +A E I
Sbjct: 170 ACIPYLKKSKV-AHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFKG-EIAV 227
Query: 396 NVILPG-FIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLI 454
N + P I T + E+ R K + I + + TG +
Sbjct: 228 NALWPKTAIHTAAMDMLGGPGIESQCR--------KVDIIADAAYSIFQK-PKSFTGNFV 278
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 137 bits (346), Expect = 3e-35
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 20/184 (10%)
Query: 182 VSNTSTISTAMSTIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 238
V++ +++ I+ + F R ++LVN AGI RD +K +E+D+ V DV+LKG+F
Sbjct: 80 VADYNSVIDGAKVIETAIKAFGRV-DILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSF 138
Query: 239 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 298
+QA + + ++ G II S G GN GQ NY A K G+ +VA+E A +
Sbjct: 139 KCTQAAFPYMKK-QNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNV 197
Query: 299 RCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELV-----ETKSSGSII 353
CNVI+P + MT + F L KP+ + + + +GS I
Sbjct: 198 LCNVIVP-TAASRMTEGILP--DILFNEL-------KPKLIAPVVAYLCHESCEDNGSYI 247
Query: 354 NIGS 357
+
Sbjct: 248 ESAA 251
Score = 134 bits (338), Expect = 3e-34
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 15 VSNTSTISTAMSAIK---EKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTF 71
V++ +++ I+ + F R ++LVN AGI RD +K +E+D+ V DV+LKG+F
Sbjct: 80 VADYNSVIDGAKVIETAIKAFGRV-DILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSF 138
Query: 72 LVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGI 131
+QA + + ++ G II S G GN GQ NY A K G+ +VA+E A +
Sbjct: 139 KCTQAAFPYMKK-QNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNV 197
Query: 132 RCNVILPGFIETPMITSVPDKVKETFTRLIP 162
CNVI+P + M + F L P
Sbjct: 198 LCNVIVP-TAASRMTEGILP--DILFNELKP 225
Score = 91.4 bits (227), Expect = 7e-20
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 348 SSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
+ G II S G GN GQ NY A K G+ +VA+E A + CNVI+P + M
Sbjct: 152 NYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVP-TAASRM 210
Query: 408 T-TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
T +PD + KP+ I V+ +L + G+ I+ G
Sbjct: 211 TEGILPDILFNEL----------KPKLIAPVVAYLCHESCE-DNGSYIESAAG 252
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 128 bits (325), Expect = 9e-35
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L LP DV + A++ ++E F + LVN AG+ +LT ++++ V D NL
Sbjct: 53 LPLPGDVREEGDWARAVAAMEEAFGEL-SALVNNAGVGVMKPVHELTLEEWRLVLDTNLT 111
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G FL + L+ G+I+N+GS+ G+ G + Y A+K G+ + +++
Sbjct: 112 GAFLGIRHAVPALLRRGG-GTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLRE 170
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVK 321
+R +LPG ++T + P +
Sbjct: 171 ANVRVVNVLPGSVDTGFAGNTPGQAW 196
Score = 128 bits (323), Expect = 2e-34
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L LP DV + A++A++E F + LVN AG+ +LT ++++ V D NL
Sbjct: 53 LPLPGDVREEGDWARAVAAMEEAFGEL-SALVNNAGVGVMKPVHELTLEEWRLVLDTNLT 111
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G FL + L+ G+I+N+GS+ G+ G + Y A+K G+ + +++
Sbjct: 112 GAFLGIRHAVPALLRRGG-GTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLRE 170
Query: 129 FGIRCNVILPGFIETPMITSVPDKVK 154
+R +LPG ++T + P +
Sbjct: 171 ANVRVVNVLPGSVDTGFAGNTPGQAW 196
Score = 88.4 bits (220), Expect = 3e-20
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
L+ G+I+N+GS+ G+ G + Y A+K G+ + +++ +R
Sbjct: 119 HAVPALLRRGG-GTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVN 177
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
+LPG ++T +L KPE++ + + F
Sbjct: 178 VLPGSVDTGFA----GNTPGQAWKL-------KPEDVAQAVLFALE 212
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 123 bits (312), Expect = 6e-33
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF--GIRCNVILPGFIE 404
K G + G+ Y KA V T S+A + + I+P ++
Sbjct: 120 KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD 179
Query: 405 TPMT-TCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSY-ITGTLIKVTGG 459
TPM +P+ + I E + ++ SS +G L+K+T
Sbjct: 180 TPMNRKWMPNA---------DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTE 227
Score = 123 bits (310), Expect = 9e-33
Identities = 22/167 (13%), Positives = 50/167 (29%), Gaps = 17/167 (10%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPP-NVLVNCAGI-TRDNWFLKLTEKDFQQVFDVN 66
+ + + + T + + + + AG + K K+ + +
Sbjct: 45 ILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQS 104
Query: 67 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 126
+ + + ++ L K G + G+ Y KA V T S+A +
Sbjct: 105 VWSSAIAAKLATTHL---KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKD 161
Query: 127 ATF--GIRCNVILPGFIETPMI-TSVPDKVKETFTRLIPLKRFGKPE 170
+ I+P ++TPM +P+ +
Sbjct: 162 SGLPDNSAVLTIMPVTLDTPMNRKWMPNA---------DHSSWTPLS 199
Score = 122 bits (309), Expect = 1e-32
Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 17/169 (10%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPP-NVLVNCAGI-TRDNWFLKLTEKDFQQVFDVN 233
+ + + + T + + + + AG + K K+ + +
Sbjct: 45 ILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQS 104
Query: 234 LKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEM 293
+ + + ++ L K G + G+ Y KA V T S+A +
Sbjct: 105 VWSSAIAAKLATTHL---KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKD 161
Query: 294 ATF--GIRCNVILPGFIETPMT-TSVPDKVKETFTRLIPLKRFGKPEAV 339
+ I+P ++TPM +P+ + +
Sbjct: 162 SGLPDNSAVLTIMPVTLDTPMNRKWMPNA---------DHSSWTPLSFI 201
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 122 bits (309), Expect = 4e-32
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ +D SN I ++ +K + ++LVN AG+ + + ++ F+VN+
Sbjct: 83 HTFVVDCSNREDIYSSAKKVKAEIG-DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 141
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
F ++A + + G I+ + S G + Y ++K F K++ E+A
Sbjct: 142 AHFWTTKAFLPAMTKNNH-GHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAA 200
Query: 296 F---GIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELVE 345
G++ + P F+ T +K T L P +PE V L+
Sbjct: 201 LQITGVKTTCLCPNFVNTGF-------IKNPSTSLGPT---LEPEEVVNRLMH 243
Score = 120 bits (304), Expect = 2e-31
Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +D SN I ++ +K + ++LVN AG+ + + ++ F+VN+
Sbjct: 83 HTFVVDCSNREDIYSSAKKVKAEIG-DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 141
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
F ++A + + G I+ + S G + Y ++K F K++ E+A
Sbjct: 142 AHFWTTKAFLPAMTKNNH-GHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAA 200
Query: 129 F---GIRCNVILPGFIETPMITSV 149
G++ + P F+ T I +
Sbjct: 201 LQITGVKTTCLCPNFVNTGFIKNP 224
Score = 72.3 bits (178), Expect = 2e-14
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATF---GIRCNVILPGFIET 405
G I+ + S G + Y ++K F K++ E+A G++ + P F+ T
Sbjct: 159 HGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNT 218
Query: 406 PMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVI 438
+K T L P +PEE+ +
Sbjct: 219 GF-------IKNPSTSLGP---TLEPEEVVNRL 241
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 121 bits (306), Expect = 4e-32
Identities = 30/204 (14%), Positives = 66/204 (32%), Gaps = 33/204 (16%)
Query: 5 SSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFD 64
S+ D+++ + + P+ +V+ AG + + Q + +
Sbjct: 46 SNNVGYRARDLASHQEVEQLFEQLDSI----PSTVVHSAGSGYFGLLQEQDPEQIQTLIE 101
Query: 65 VNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAM 124
NL V + + K + +++ I S Q +S Y A K V+ +SV +
Sbjct: 102 NNLSSAINVLRELVKRYKDQP--VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRL 159
Query: 125 EMATFGIRCNVILPGFIETPMITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSN 184
E+ ++ + PG + T + ++ + D +
Sbjct: 160 ELKGKPMKIIAVYPGGMATEFW----ETSGKSLDTSSFMS--------------AEDAAL 201
Query: 185 TSTISTAMSTIKEKFSRPPNVLVN 208
I A+ + N V+
Sbjct: 202 --MIHGAL-------ANIGNGYVS 216
Score = 119 bits (302), Expect = 1e-31
Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 170 EGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQV 229
S+ D+++ + + P+ +V+ AG + + Q +
Sbjct: 44 CLSNNVGYRARDLASHQEVEQLFEQLDSI----PSTVVHSAGSGYFGLLQEQDPEQIQTL 99
Query: 230 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 289
+ NL V + + K + +++ I S Q +S Y A K V+ +SV
Sbjct: 100 IENNLSSAINVLRELVKRYKDQP--VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESV 157
Query: 290 AMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLK 331
+E+ ++ + PG + T + ++ +
Sbjct: 158 RLELKGKPMKIIAVYPGGMATEFW----ETSGKSLDTSSFMS 195
Score = 84.5 bits (210), Expect = 7e-19
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ K + +++ I S Q +S Y A K V+ +SV +E+ ++
Sbjct: 113 ELVKRYKDQP--VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIA 170
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICF-LASDRSSYITGTLIKV 456
+ PG + T ET + + F E+ +I LA+ + Y++ +
Sbjct: 171 VYPGGMATEFW--------ETSGKSLDTSSFMSAEDAALMIHGALANIGNGYVSDITVNR 222
Query: 457 TGG 459
G
Sbjct: 223 EGH 225
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 121 bits (307), Expect = 9e-32
Identities = 21/145 (14%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Query: 171 GSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 230
G+++ + + + + ++ + ++L+ ++
Sbjct: 76 GAASAHYIAGTMEDMTFAEQFVAQAGKLMGGL-DMLILNHITNTSLNLFHDDIHHVRKSM 134
Query: 231 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 290
+VN +++ A L +S+GSI+ + S+ G++ + Y+A+K ++ F S+
Sbjct: 135 EVNFLSYVVLTVAALPML--KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIR 192
Query: 291 MEMAT--FGIRCNVILPGFIETPMT 313
E + + + + G I+T
Sbjct: 193 KEYSVSRVNVSITLCVLGLIDTETA 217
Score = 121 bits (305), Expect = 2e-31
Identities = 21/144 (14%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
G+++ + + + + ++ + ++L+ ++
Sbjct: 76 GAASAHYIAGTMEDMTFAEQFVAQAGKLMGGL-DMLILNHITNTSLNLFHDDIHHVRKSM 134
Query: 64 DVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
+VN +++ A L +S+GSI+ + S+ G++ + Y+A+K ++ F S+
Sbjct: 135 EVNFLSYVVLTVAALPML--KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIR 192
Query: 124 MEMAT--FGIRCNVILPGFIETPM 145
E + + + + G I+T
Sbjct: 193 KEYSVSRVNVSITLCVLGLIDTET 216
Score = 76.5 bits (189), Expect = 9e-16
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT--FGIRCNVILPGFIE 404
+S+GSI+ + S+ G++ + Y+A+K ++ F S+ E + + + + G I+
Sbjct: 154 QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 213
Query: 405 TPMT 408
T
Sbjct: 214 TETA 217
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 122 bits (309), Expect = 1e-31
Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 6/146 (4%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ + +DV++ A ++ +F ++L N AG+ + + D+ + VNL
Sbjct: 62 MGVQLDVASREGFKMAADEVEARFGPV-SILCNNAGVNLFQPIEESSYDDWDWLLGVNLH 120
Query: 69 GTFLVSQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 123
G +VE G ++N S+ + Y TK V ++S+
Sbjct: 121 GVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLH 180
Query: 124 MEMATFGIRCNVILPGFIETPMITSV 149
+ + I +V+ PG +++ + S
Sbjct: 181 YSLLKYEIGVSVLCPGLVKSYIYASD 206
Score = 122 bits (309), Expect = 1e-31
Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ + +DV++ A ++ +F ++L N AG+ + + D+ + VNL
Sbjct: 62 MGVQLDVASREGFKMAADEVEARFGPV-SILCNNAGVNLFQPIEESSYDDWDWLLGVNLH 120
Query: 236 GTFLVSQAVCKELVETKS-----SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVA 290
G +VE G ++N S+ + Y TK V ++S+
Sbjct: 121 GVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLH 180
Query: 291 MEMATFGIRCNVILPGFIETPMTTSV-----------PDKVKETFTRLIPLKRFG-KPEA 338
+ + I +V+ PG +++ + S K RL + FG +P+
Sbjct: 181 YSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDV 240
Query: 339 V 339
+
Sbjct: 241 I 241
Score = 82.5 bits (204), Expect = 1e-17
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
G ++N S+ + Y TK V ++S+ + + I +V+ PG +++ +
Sbjct: 144 GGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIY 203
Query: 409 TCV-----------PDKVKETFTRLIPFKRFG-KPEEIGEVI 438
K RL FG +P+ IG +
Sbjct: 204 ASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARV 245
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 113 bits (286), Expect = 6e-29
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ D+SN I + SAI+ + S ++ +N AG+ R + L + ++ +F+VN+
Sbjct: 86 IPYRCDLSNEEDILSMFSAIRSQHSGV-DICINNAGLARPDTLLSGSTSGWKDMFNVNVL 144
Query: 69 GTFLVSQAVCKELVETK-SSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAME 125
+ ++ + + E G IINI S+ G + Y+ATK V A T+ + E
Sbjct: 145 ALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQE 204
Query: 126 MATFG--IRCNVILPGFIETPMITSV----PDKVKETFTRLIPLKRFGKPEGSSTHLSLP 179
+ IR I PG +ET + P+K T+ ++ LK P
Sbjct: 205 LREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLK--------------P 250
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVN 208
DV+ + +ST P ++ +
Sbjct: 251 EDVAE--AVIYVLST-------PAHIQIG 270
Score = 111 bits (281), Expect = 4e-28
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+ D+SN I + S I+ + S ++ +N AG+ R + L + ++ +F+VN+
Sbjct: 86 IPYRCDLSNEEDILSMFSAIRSQHSGV-DICINNAGLARPDTLLSGSTSGWKDMFNVNVL 144
Query: 236 GTFLVSQAVCKELVETK-SSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAME 292
+ ++ + + E G IINI S+ G + Y+ATK V A T+ + E
Sbjct: 145 ALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQE 204
Query: 293 MATFG--IRCNVILPGFIETPMTTSV----PDKVKETFTRLIPLKRFGKPEAV 339
+ IR I PG +ET + P+K T+ ++ L KPE V
Sbjct: 205 LREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCL----KPEDV 253
Score = 65.7 bits (161), Expect = 3e-12
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 338 AVCKELVETK-SSGSIINIGSIVGQ--MGNMGQSNYAATKAGVEAFTKSVAMEMATFG-- 392
+ + E G IINI S+ G + Y+ATK V A T+ + E+
Sbjct: 152 EAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTH 211
Query: 393 IRCNVILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
IR I PG +ET + DK E + KPE++ E + ++ S
Sbjct: 212 IRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLS 262
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 112 bits (283), Expect = 8e-29
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 159 RLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWF 218
RL + E +DVS ++ + E+F +V+V AG+
Sbjct: 38 RLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV-DVVVANAGLGYFKRL 96
Query: 219 LKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAAT 278
+L+E++F ++ +VNL G + +A L T +++ + + Y +T
Sbjct: 97 EELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-GLALVTTSDVSAR-LIPYGGGYVST 154
Query: 279 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKE 322
K A ++ +E +R + PG ++T S P K KE
Sbjct: 155 KWAARALVRTFQIENP--DVRFFELRPGAVDTYFGGSKPGKPKE 196
Score = 111 bits (281), Expect = 2e-28
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+DVS ++ + E+F +V+V AG+ +L+E++F ++ +VNL
Sbjct: 55 FYHHLDVSKAESVEEFSKKVLERFGDV-DVVVANAGLGYFKRLEELSEEEFHEMIEVNLL 113
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G + +A L T +++ + + Y +TK A ++ +E
Sbjct: 114 GVWRTLKAFLDSLKRTG-GLALVTTSDVSAR-LIPYGGGYVSTKWAARALVRTFQIENP- 170
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKE 155
+R + PG ++T S P K KE
Sbjct: 171 -DVRFFELRPGAVDTYFGGSKPGKPKE 196
Score = 69.1 bits (170), Expect = 1e-13
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
A L T +++ + + Y +TK A ++ +E +R
Sbjct: 121 AFLDSLKRTGG-LALVTTSDVSAR-LIPYGGGYVSTKWAARALVRTFQIENP--DVRFFE 176
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
+ PG ++T P K KE K + KP+EI E + L
Sbjct: 177 LRPGAVDTYFGGSKPGKPKE--------KGYLKPDEIAEAVRCLLK 214
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 113 bits (285), Expect = 9e-29
Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
++ +DV++ I + + ++ R +VLVN AG T+ F + TE++ + +F++++
Sbjct: 54 EAISLDVTDGERIDVVAADVLARYGRV-DVLVNNAGRTQVGAFEETTERELRDLFELHVF 112
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G +++A+ ++ E S GS++NI S GQ+ G S Y+ATKA +E ++ +A E+A
Sbjct: 113 GPARLTRALLPQMRERGS-GSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAP 171
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKET 156
FGI+ ++ PG T + E
Sbjct: 172 FGIKVLIVEPGAFRTNLFGKGAAYFSEE 199
Score = 112 bits (283), Expect = 2e-28
Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
++ +DV++ I + + ++ R +VLVN AG T+ F + TE++ + +F++++
Sbjct: 54 EAISLDVTDGERIDVVAADVLARYGRV-DVLVNNAGRTQVGAFEETTERELRDLFELHVF 112
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G +++A+ ++ E S GS++NI S GQ+ G S Y+ATKA +E ++ +A E+A
Sbjct: 113 GPARLTRALLPQMRERGS-GSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAP 171
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKET 323
FGI+ ++ PG T + E
Sbjct: 172 FGIKVLIVEPGAFRTNLFGKGAAYFSEE 199
Score = 75.4 bits (186), Expect = 2e-15
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 405
SGS++NI S GQ+ G S Y+ATKA +E ++ +A E+A FGI+ ++ PG T
Sbjct: 130 SGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRT 186
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 111 bits (279), Expect = 1e-27
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 4/178 (2%)
Query: 151 DKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCA 210
D V + + + F + L +DV + ++ A+ I + R +VL++ A
Sbjct: 38 DIVGRNASNVEAIAGFARDNDVDLRT-LELDVQSQVSVDRAIDQIIGEDGRI-DVLIHNA 95
Query: 211 GITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM 270
G T + F +++D+N+ T V++A + K G +I I S G
Sbjct: 96 GHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKH-GLLIWISSSSSAGGTP 154
Query: 271 -GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRL 327
+ Y A KA ++A A E++ +GI ++I+PG + V + R
Sbjct: 155 PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQ 212
Score = 110 bits (276), Expect = 3e-27
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+L +DV + ++ A+ I + R +VL++ AG T + F +++D+N+
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRI-DVLIHNAGHMVFGPAEAFTPEQFAELYDINVL 120
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMA 127
T V++A + K G +I I S G + Y A KA ++A A E++
Sbjct: 121 STQRVNRAALPHMRRQKH-GLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELS 179
Query: 128 TFGIRCNVILPGFIETPMITSVPDKVKETFTRL 160
+GI ++I+PG + V + R
Sbjct: 180 RWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQ 212
Score = 75.2 bits (185), Expect = 4e-15
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 349 SGSIINIGSIVGQMGNM-GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 407
G +I I S G + Y A KA ++A A E++ +GI ++I+PG +
Sbjct: 138 HGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 108 bits (271), Expect = 6e-27
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L +DV++ T TA++ ++ + + +VN AG+ ++Q++FDVN+
Sbjct: 62 LCAQVDVTDKYTFDTAITRAEKIYGPA-DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVL 120
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G QAV + G+IINI SI G+ + Y TK V A +++V E+A
Sbjct: 121 GLLNGMQAVLAPMKARNC-GTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA 179
Query: 296 FGIRCNVILPGFIETPMTTSVPDK 319
+R I P ++T + + +
Sbjct: 180 SNVRVMTIAPSAVKTELLSHTTSQ 203
Score = 107 bits (270), Expect = 8e-27
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L +DV++ T TA++ ++ + + +VN AG+ ++Q++FDVN+
Sbjct: 62 LCAQVDVTDKYTFDTAITRAEKIYGPA-DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVL 120
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G QAV + G+IINI SI G+ + Y TK V A +++V E+A
Sbjct: 121 GLLNGMQAVLAPMKARNC-GTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA 179
Query: 129 FGIRCNVILPGFIETPMITSVPDK 152
+R I P ++T +++ +
Sbjct: 180 SNVRVMTIAPSAVKTELLSHTTSQ 203
Score = 69.9 bits (172), Expect = 1e-13
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV + G+IINI SI G+ + Y TK V A +++V E+A +R
Sbjct: 128 AVLAPMKARNC-GTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMT 186
Query: 398 ILPGFIETPMTTCVPDK--------VKETFTRLIPFKRFGKPEEIGEVICFLAS 443
I P ++T + + + + ++ +++ + F
Sbjct: 187 IAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLA------ADDVARAVLFAYQ 234
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 107 bits (269), Expect = 8e-27
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L +DV++ + A+++ E ++LVN AGI D+ ++ D NL
Sbjct: 59 HVLELDVADRQGVDAAVASTVEALGGL-DILVNNAGIMLLGPVEDADTTDWTRMIDTNLL 117
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G +++A L+ +S G+++ + SI G++ + Y ATK GV AF++++ E+
Sbjct: 118 GLMYMTRAALPHLL--RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTE 175
Query: 296 FGIRCNVILPGFIETPMTTSVPD-----KVKETFTRLIPLKRFGKPEAV 339
G+R VI PG +T + + ++ +++ L + + +
Sbjct: 176 RGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKL----QAQDI 220
Score = 107 bits (269), Expect = 9e-27
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L +DV++ + A+++ E ++LVN AGI D+ ++ D NL
Sbjct: 59 HVLELDVADRQGVDAAVASTVEALGGL-DILVNNAGIMLLGPVEDADTTDWTRMIDTNLL 117
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G +++A L+ +S G+++ + SI G++ + Y ATK GV AF++++ E+
Sbjct: 118 GLMYMTRAALPHLL--RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTE 175
Query: 129 FGIRCNVILPGFIETPMITSVPD-----KVKETFTRLIPLKRFGKPEGSSTHLSLPMDVS 183
G+R VI PG +T + + ++ +++ L+ D++
Sbjct: 176 RGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQ--------------AQDIA 221
Query: 184 NTSTISTAMSTIKEKFSRPPNVLVN 208
+ A+ + P + V+
Sbjct: 222 E--AVRYAV-------TAPHHATVH 237
Score = 70.2 bits (173), Expect = 6e-14
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 347 KSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 406
+S G+++ + SI G++ + Y ATK GV AF++++ E+ G+R VI PG +T
Sbjct: 132 RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTE 191
Query: 407 MTTCVPD-----KVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
+ + ++ +++ + ++I E + + +
Sbjct: 192 LRGHITHTATKEMYEQRISQIRKL----QAQDIAEAVRYAVT 229
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 105 bits (263), Expect = 1e-25
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 159 RLIPLK-RFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-N 216
+L LK + ++ +D++ I + + ++F ++LVN AG +
Sbjct: 72 KLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDI-DILVNNAGKALGSD 130
Query: 217 WFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYA 276
++ +D Q VFD N+ ++QAV S G I+N+GSI G+ S Y
Sbjct: 131 RVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNS-GDIVNLGSIAGRDAYPTGSIYC 189
Query: 277 ATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSV----PDKVKETFTRLIPLK 331
A+K V AFT S+ E+ IR +I PG +ET + ++ K + PL
Sbjct: 190 ASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLM 248
Score = 102 bits (256), Expect = 1e-24
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQV 62
++ +D++ I + + ++F ++LVN AG + ++ +D Q V
Sbjct: 85 PNAKVHVAQLDITQAEKIKPFIENLPQEFKDI-DILVNNAGKALGSDRVGQIATEDIQDV 143
Query: 63 FDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSV 122
FD N+ ++QAV S G I+N+GSI G+ S Y A+K V AFT S+
Sbjct: 144 FDTNVTALINITQAVLPIFQAKNS-GDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSL 202
Query: 123 AMEMATFGIRCNVILPGFIET 143
E+ IR +I PG +ET
Sbjct: 203 RKELINTKIRVILIAPGLVET 223
Score = 67.3 bits (165), Expect = 1e-12
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV S G I+N+GSI G+ S Y A+K V AFT S+ E+ IR +
Sbjct: 157 AVLPIFQAKNS-GDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVIL 215
Query: 398 ILPGFIETPMTTCV----PDKVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
I PG +ET + ++ K + P +++ ++I + S
Sbjct: 216 IAPGLVETEFSLVRYRGNEEQAKNVYKDTTPL----MADDVADLIVYATS 261
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 103 bits (259), Expect = 3e-25
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 2 LTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQ 60
L+ + L L +DV + + +S A+ + E+F+ L+N AG+ + D+
Sbjct: 65 LSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATL-RGLINNAGLALGTDPAQSCDLDDWD 123
Query: 61 QVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTK 120
+ D N+KG ++ + L+ + SI+N+GS+ G+ G Y TKA VE F+
Sbjct: 124 TMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSL 183
Query: 121 SVAMEMATFGIRCNVILPGFIET 143
++ ++ G+R + PG E+
Sbjct: 184 NLRCDLQGTGVRVTNLEPGLCES 206
Score = 102 bits (256), Expect = 7e-25
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 234
L L +DV + + +S A+ + E+F+ L+N AG+ + D+ + D N+
Sbjct: 72 LPLTLDVRDRAAMSAAVDNLPEEFATL-RGLINNAGLALGTDPAQSCDLDDWDTMVDTNI 130
Query: 235 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 294
KG ++ + L+ + SI+N+GS+ G+ G Y TKA VE F+ ++ ++
Sbjct: 131 KGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQ 190
Query: 295 TFGIRCNVILPGFIETPMTTSVPD----KVKETFTRLIPL 330
G+R + PG E+ + + +T+ P+
Sbjct: 191 GTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPI 230
Score = 67.6 bits (166), Expect = 7e-13
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
+ L+ + SI+N+GS+ G+ G Y TKA VE F+ ++ ++ G+R
Sbjct: 139 LLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTN 198
Query: 398 ILPGFIETPMTTCVPD----KVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
+ PG E+ + + +T+ P +PE+I E I ++ +
Sbjct: 199 LEPGLCESEFSLVRFGGDQARYDKTYAGAHPI----QPEDIAETIFWIMN 244
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 102 bits (256), Expect = 6e-25
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
L+ +DV++ +++ + + R +VLVN AG+ + + +++++ DVN+K
Sbjct: 56 LAQVLDVTDRHSVAAFAQAAVDTWGRI-DVLVNNAGVMPLSPLAAVKVDEWERMIDVNIK 114
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
G AV + +S G IINIGSI + Y ATK V A + + E
Sbjct: 115 GVLWGIGAVLPIMEAQRS-GQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQEST- 172
Query: 296 FGIRCNVILPGFIETPMTTSVPD 318
IR + PG +E+ + ++
Sbjct: 173 -NIRVTCVNPGVVESELAGTITH 194
Score = 101 bits (254), Expect = 1e-24
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 30/203 (14%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L+ +DV++ +++ A + + R +VLVN AG+ + + +++++ DVN+K
Sbjct: 56 LAQVLDVTDRHSVAAFAQAAVDTWGRI-DVLVNNAGVMPLSPLAAVKVDEWERMIDVNIK 114
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
G AV + +S G IINIGSI + Y ATK V A + + E
Sbjct: 115 GVLWGIGAVLPIMEAQRS-GQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQEST- 172
Query: 129 FGIRCNVILPGFIETPMITSVPDKVKE---TFTRLIPLKRFGKPEGSSTHLSLPMDVSNT 185
IR + PG +E+ + ++ + R I L+ P D++
Sbjct: 173 -NIRVTCVNPGVVESELAGTITHEETMAAMDTYRAIALQ--------------PADIAR- 216
Query: 186 STISTAMSTIKEKFSRPPNVLVN 208
+ + P +V
Sbjct: 217 -AVRQVI-------EAPQSVDTT 231
Score = 62.2 bits (152), Expect = 4e-11
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV + +S G IINIGSI + Y ATK V A + + E IR
Sbjct: 122 AVLPIMEAQRS-GQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQEST--NIRVTC 178
Query: 398 ILPGFIETPMTTCVPDKVKETFTRLIPFKRFG-KPEEIGEVICFLAS 443
+ PG +E+ + + + ++ +P +I + +
Sbjct: 179 VNPGVVESELAGTITHEETMAAMDT--YRAIALQPADIARAVRQVIE 223
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 101 bits (254), Expect = 1e-24
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPP-NVLVNCAGITRDNW-FLKLTEKDFQQVFDVNLK 235
L +D+ N ++ I+ NVL N AGI + + ++ N
Sbjct: 77 LEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTV 136
Query: 236 GTFLVSQAV----------CKELVETKSSGSIINIGSIVGQMGNMGQSN---YAATKAGV 282
++++A + +IIN+ SI+G + Y +K+ +
Sbjct: 137 VPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSAL 196
Query: 283 EAFTKSVAMEMATFGIRCNVILPGFIETPMT 313
A TKS+++++ I C + PG+++T M
Sbjct: 197 NAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 227
Score = 101 bits (253), Expect = 2e-24
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPP-NVLVNCAGITRDNW-FLKLTEKDFQQVFDVNLK 68
L +D+ N ++ I+ NVL N AGI + + ++ N
Sbjct: 77 LEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTV 136
Query: 69 GTFLVSQAV----------CKELVETKSSGSIINIGSIVGQMGNMGQSN---YAATKAGV 115
++++A + +IIN+ SI+G + Y +K+ +
Sbjct: 137 VPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSAL 196
Query: 116 EAFTKSVAMEMATFGIRCNVILPGFIETPM 145
A TKS+++++ I C + PG+++T M
Sbjct: 197 NAATKSLSVDLYPQRIMCVSLHPGWVKTDM 226
Score = 56.2 bits (136), Expect = 4e-09
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 327 LIPLKRFGKPEAVCKELVETKSSGSIINIGSIVGQMGNMGQSN---YAATKAGVEAFTKS 383
+PL + K + +IIN+ SI+G + Y +K+ + A TKS
Sbjct: 145 CLPLLK--KAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKS 202
Query: 384 VAMEMATFGIRCNVILPGFIETPMT 408
+++++ I C + PG+++T M
Sbjct: 203 LSVDLYPQRIMCVSLHPGWVKTDMG 227
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 101 bits (254), Expect = 3e-24
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 176 LSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 235
+L +DV ++ +++ A + E +VLV AG+ L E V DVN+
Sbjct: 60 ETLQLDVRDSKSVAAARERVTE---GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVV 116
Query: 236 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 295
GT + QA ++ S G ++ GS+ G MG Y A+K +E +S+A+ +
Sbjct: 117 GTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLP 175
Query: 296 FGIRCNVILPGFIETPMTTSVPDKVKETFTRLIP 329
FG+ ++I G + T +KV + ++
Sbjct: 176 FGVHLSLIECGPVHTAFM----EKVLGSPEEVLD 205
Score = 101 bits (253), Expect = 6e-24
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+L +DV ++ +++ A + E +VLV AG+ L E V DVN+
Sbjct: 60 ETLQLDVRDSKSVAAARERVTE---GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVV 116
Query: 69 GTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMAT 128
GT + QA ++ S G ++ GS+ G MG Y A+K +E +S+A+ +
Sbjct: 117 GTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLP 175
Query: 129 FGIRCNVILPGFIETP 144
FG+ ++I G + T
Sbjct: 176 FGVHLSLIECGPVHTA 191
Score = 74.4 bits (183), Expect = 8e-15
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 349 SGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 408
SG ++ GS+ G MG Y A+K +E +S+A+ + FG+ ++I G + T
Sbjct: 134 SGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFM 193
Query: 409 TCVPDKVKETFTRLIP 424
+KV + ++
Sbjct: 194 ----EKVLGSPEEVLD 205
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 99 bits (250), Expect = 3e-24
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNL 67
+DV N + I ++++ ++ ++LVN AG+ K + +D++ + D N
Sbjct: 49 YIAQLDVRNRAAIEEMLASLPAEWCNI-DILVNNAGLALGMEPAHKASVEDWETMIDTNN 107
Query: 68 KGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMA 127
KG +++AV +VE G IINIGS G G + Y ATKA V F+ ++ ++
Sbjct: 108 KGLVYMTRAVLPGMVERNH-GHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLH 166
Query: 128 TFGIRCNVILPGFIETPMITSV-----PDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDV 182
+R I PG + ++V K ++T+ + L P DV
Sbjct: 167 GTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALT--------------PEDV 212
Query: 183 SNTSTISTAMSTIKEKFSRPPNVLVN 208
S + + P +V +N
Sbjct: 213 SE--AVWWVS-------TLPAHVNIN 229
Score = 99.5 bits (249), Expect = 6e-24
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 159 RLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD-NW 217
RL LK E +DV N + I ++++ ++ ++LVN AG+
Sbjct: 36 RLQELKD----ELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNI-DILVNNAGLALGMEP 90
Query: 218 FLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAA 277
K + +D++ + D N KG +++AV +VE G IINIGS G G + Y A
Sbjct: 91 AHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSWPYAGGNVYGA 149
Query: 278 TKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSV-----PDKVKETFTRLIPLK 331
TKA V F+ ++ ++ +R I PG + ++V K ++T+ + L
Sbjct: 150 TKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALT 208
Score = 64.5 bits (158), Expect = 7e-12
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 338 AVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNV 397
AV +VE G IINIGS G G + Y ATKA V F+ ++ ++ +R
Sbjct: 116 AVLPGMVERNH-GHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTD 174
Query: 398 ILPGFIETPMTTCV-----PDKVKETFTRLIPFKRFGKPEEIGEVICFLAS 443
I PG + + V K ++T+ + PE++ E + ++++
Sbjct: 175 IEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVAL----TPEDVSEAVWWVST 221
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 99.7 bits (249), Expect = 4e-24
Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 19/155 (12%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPP-NVLVNCAGITRDNW-FLKLTEKDFQQVFDVNLK 235
LP+ V+ ++ T +S + E ++L+N AG+ + + DVN
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 236 GTFLVSQAV----------CKELVETKSSGSIINIGSIVGQMGNMGQSN-------YAAT 278
L++Q + + S ++I I S +G + + + Y +
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMS 175
Query: 279 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMT 313
KA + F +++A+++ + PG+++T +
Sbjct: 176 KAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210
Score = 99.3 bits (248), Expect = 7e-24
Identities = 30/163 (18%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 2 LTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPP-NVLVNCAGITRDNW-FLKLTEKDF 59
+ S H+ LP+ V+ ++ T +S + E ++L+N AG+ +
Sbjct: 48 IKDSRVHV-LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVI 106
Query: 60 QQVFDVNLKGTFLVSQAV----------CKELVETKSSGSIINIGSIVGQMGNMGQSN-- 107
+ DVN L++Q + + S ++I I S +G + + +
Sbjct: 107 AEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQ 166
Query: 108 -----YAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPM 145
Y +KA + F +++A+++ + PG+++T +
Sbjct: 167 FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
Score = 53.5 bits (129), Expect = 3e-08
Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 327 LIPLKRFGKPEAVCKELVETKSSGSIINIGSIVGQMGNMGQSN-------YAATKAGVEA 379
L+PL + + + S ++I I S +G + + + Y +KA +
Sbjct: 124 LLPLLK--NAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINM 181
Query: 380 FTKSVAMEMATFGIRCNVILPGFIETPMT 408
F +++A+++ + PG+++T +
Sbjct: 182 FGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 70.9 bits (174), Expect = 7e-14
Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 50/191 (26%)
Query: 168 KPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQ 227
+ EG S +D+ + +I +++++ +VLVN AGI +
Sbjct: 50 QAEGLSPRF-HQLDIDDLQSIRALRDFLRKEYGGL-DVLVNNAGIAFKVADPTPFHIQAE 107
Query: 228 QVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSN------------- 274
N GT V + + K G ++N+ SI+ S
Sbjct: 108 VTMKTNFFGTRDVCTELLPLI---KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITE 164
Query: 275 ----------------------------YAATKAGVEAFTKSVAMEMATF----GIRCNV 302
Y TK GV ++ A +++ I N
Sbjct: 165 EELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNA 224
Query: 303 ILPGFIETPMT 313
PG++ T M
Sbjct: 225 CCPGWVRTDMA 235
Score = 68.9 bits (169), Expect = 3e-13
Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 49/180 (27%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGT 70
+D+ + +I +++++ +VLVN AGI + N GT
Sbjct: 59 HQLDIDDLQSIRALRDFLRKEYGGL-DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGT 117
Query: 71 FLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSN----------------------- 107
V + + K G ++N+ SI+ S
Sbjct: 118 RDVCTELLPLI---KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 174
Query: 108 ------------------YAATKAGVEAFTKSVAMEMATF----GIRCNVILPGFIETPM 145
Y TK GV ++ A +++ I N PG++ T M
Sbjct: 175 VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM 234
Score = 34.3 bits (79), Expect = 0.073
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 46/117 (39%)
Query: 338 AVCKELVET-KSSGSIINIGSIVGQMGNMGQSN--------------------------- 369
VC EL+ K G ++N+ SI+ S
Sbjct: 119 DVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDT 178
Query: 370 --------------YAATKAGVEAFTKSVAMEMATF----GIRCNVILPGFIETPMT 408
Y TK GV ++ A +++ I N PG++ T M
Sbjct: 179 KKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 1e-12
Identities = 60/345 (17%), Positives = 104/345 (30%), Gaps = 97/345 (28%)
Query: 94 GSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPDKV 153
GS Q MG Y +KA + + ++ T+G S+ D V
Sbjct: 1625 GS---QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----------------SILDIV 1665
Query: 154 KETFTRLIPLKRFGKPEGSS-THLSLPMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGI 212
L FG +G M I ++ +
Sbjct: 1666 INNPVNLTIH--FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT----F 1719
Query: 213 TRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQ 272
+ L T+ F Q L+ +A ++L KS G +I + G
Sbjct: 1720 RSEKGLLSATQ--FTQP------ALTLMEKAAFEDL---KSKG-LIPADATF-----AGH 1762
Query: 273 S--NYAA--TKAGVEAFTKSVAMEMATF-GIRCNVILP----GFIETPMTTSVPDKVKET 323
S YAA + A V + +E+ + G+ V +P G M P +V +
Sbjct: 1763 SLGEYAALASLADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 324 FTRLIPLKRFGKPEAVCKELVET--KSSGSIINIGSIVGQMGNMGQSNY---------AA 372
F+ + + +VE K +G ++ IV NY A
Sbjct: 1821 FS-----------QEALQYVVERVGKRTGWLV---EIV---------NYNVENQQYVAAG 1857
Query: 373 TKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPDKVKE 417
++ T V + I + L ++ ++V+
Sbjct: 1858 DLRALDTVTN-VLNFIKLQKID-IIELQ---KSLSL----EEVEG 1893
Score = 39.3 bits (91), Expect = 0.003
Identities = 27/211 (12%), Positives = 53/211 (25%), Gaps = 91/211 (43%)
Query: 1 MLTGSSTHLSLPMDVSNTS----TISTAM-SAIKEKFSRPPNV------------LVNCA 43
LS T + A +K K P + L + A
Sbjct: 1718 TFRSEKGLLSAT---QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 44 GITRDNWFLKLTEKDFQQVFD-VNLKGTFL---------------------------VSQ 75
+ + + + + V +G + SQ
Sbjct: 1775 DV------M-----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 76 AVCKELVET--KSSGSIINIGSIVGQMGNMGQSNY---------AATKAGVEAFTKSVAM 124
+ +VE K +G ++ IV NY A ++ T V
Sbjct: 1824 EALQYVVERVGKRTGWLV---EIV---------NYNVENQQYVAAGDLRALDTVTN-VLN 1870
Query: 125 EMATFGIRCNVILPGFIETPMITSVPDKVKE 155
+ I + L ++ + ++V+
Sbjct: 1871 FIKLQKID-IIELQ---KSLSL----EEVEG 1893
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 59.2 bits (143), Expect = 6e-10
Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 78/226 (34%)
Query: 168 KPEGSSTHLSLPMDVSN-TSTISTAMSTIKEKFSRPPNVLVNCAGIT------------- 213
K + +DV++ +T+S+ IK F + ++LVN AG+
Sbjct: 57 KNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKL-DILVNNAGVAGFSVDADRFKAMI 115
Query: 214 -----------------RDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGS 256
+ T + ++ +N G V++ + L++ S
Sbjct: 116 SDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVL-IPLLQLSDSPR 174
Query: 257 IINIGSIVGQMGNMGQSN------------------------------------------ 274
I+N+ S G + +
Sbjct: 175 IVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGA 234
Query: 275 -YAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDK 319
Y +KA + A+T+ +A ++ + N + PG ++T M + +
Sbjct: 235 AYTTSKACLNAYTRVLANKIP--KFQVNCVCPGLVKTEMNYGIGNY 278
Score = 56.5 bits (136), Expect = 6e-09
Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 78/209 (37%)
Query: 11 LPMDVSN-TSTISTAMSAIKEKFSRPPNVLVNCAGIT----------------------- 46
+DV++ +T+S+ IK F + ++LVN AG+
Sbjct: 67 HQLDVTDPIATMSSLADFIKTHFGKL-DILVNNAGVAGFSVDADRFKAMISDIGEDSEEL 125
Query: 47 -------RDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQ 99
+ T + ++ +N G V++ + L++ S I+N+ S G
Sbjct: 126 VKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVL-IPLLQLSDSPRIVNVSSSTGS 184
Query: 100 MGNMGQSN-------------------------------------------YAATKAGVE 116
+ + Y +KA +
Sbjct: 185 LKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN 244
Query: 117 AFTKSVAMEMATFGIRCNVILPGFIETPM 145
A+T+ +A ++ + N + PG ++T M
Sbjct: 245 AYTRVLANKIP--KFQVNCVCPGLVKTEM 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 7e-10
Identities = 63/486 (12%), Positives = 133/486 (27%), Gaps = 175/486 (36%)
Query: 47 RDNWFLKLTEKDFQQVFDVN-----LKGTFLVSQAVCKELVETKSSGS----IINI---- 93
+D L + E F FD K S+ ++ +K + S +
Sbjct: 19 KD--ILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 94 -GSIVGQ-MGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMIT--SV 149
+V + + + + NY + ++ + +M + + + + + + + +V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNV 131
Query: 150 P-----DKVKETFTRLIPLKR--------FGKPEGSSTHLSLPMDVSNTSTISTAMS--- 193
K+++ L P K GK + + +DV + + M
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----TW---VALDVCLSYKVQCKMDFKI 184
Query: 194 ---TIKEKFSRPPNVLVN----CAGITRD---------------NWF---LK--LTEKDF 226
+K + P VL I + + L+ L K +
Sbjct: 185 FWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 227 QQ-------VFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATK 279
+ V + F +S CK L+ T+ + + S
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLS---CKILLTTRFK-QVTDFLS----------------- 282
Query: 280 AGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAV 339
A T ++++ PD+VK + + + P V
Sbjct: 283 ---AATTTHISLDH---------HSMTL--------TPDEVKSLLLKYLDCRPQDLPREV 322
Query: 340 CKELVETKSSGSIINIGSIVGQMGNMGQSNYAAT-----KAGVEAFTKSVAMEMATFGIR 394
+ + SI+ + + AT + T + +
Sbjct: 323 LT--------TNPRRL-SIIAES----IRDGLATWDNWKHVNCDKLTTIIESSLN----- 364
Query: 395 CNVILPGFIETPMTTCVPDKVKETFTRL--------IPFKRFG------KPEEIGEVICF 440
+L P + ++ F RL IP ++ V+
Sbjct: 365 ---VLE-----------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 441 LASDRS 446
L S
Sbjct: 411 LHK-YS 415
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 56.1 bits (136), Expect = 6e-09
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA K +A+++ IR N I G I T V + + P KR
Sbjct: 190 KASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQ 249
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
E+G+ +L SD SS +TG I V G
Sbjct: 250 VEVGKTAAYLLSDLSSGVTGENIHVDSG 277
Score = 42.6 bits (101), Expect = 2e-04
Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 36/203 (17%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T ++ ++ L L + +DV + + I + +
Sbjct: 63 FTYRKERSRK---ELEKL---LEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNI-DG 115
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
+ + F + + + F D+ S V E + GS
Sbjct: 116 VYHSIAFANMEDLRGRFSETSREGFLLAQDI--------SSYSLTIVAHEAKKLMPEGGS 167
Query: 257 IIN---IGS--IVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 311
I+ +G V MG KA +EA K +A+++ IR N I G I T
Sbjct: 168 IVATTYLGGEFAVQNYNVMG-----VAKASLEANVKYLALDLGPDNIRVNAISAGPIRTL 222
Query: 312 MTTSVPD--KVKETFTRLIPLKR 332
V + + PLKR
Sbjct: 223 SAKGVGGFNTILKEIEERAPLKR 245
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDF 59
+DV + + I + + + + F + + + F
Sbjct: 82 NQPEAHLYQIDVQSDEEVINGFEQIGKDVGNI-DGVYHSIAFANMEDLRGRFSETSREGF 140
Query: 60 QQVFDVNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGS--IVGQMGNMGQSNYA 109
D+ S V E + GSI+ +G V MG
Sbjct: 141 LLAQDI--------SSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMG----- 187
Query: 110 ATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
KA +EA K +A+++ IR N I G I T V + + PLKR
Sbjct: 188 VAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKR 245
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 55.7 bits (135), Expect = 6e-09
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA + +A E+ G+R N I G + T +P K+ + + P +R
Sbjct: 164 KAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQ 223
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
EE+G + FL S +S ITG ++ V G
Sbjct: 224 EEVGNLGLFLLSPLASGITGEVVYVDAG 251
Score = 37.5 bits (88), Expect = 0.006
Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 38/203 (18%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
++ ++++ L + G + L DV+ + + +KE F +
Sbjct: 39 LSYQAERLRP---EAEKLA---EALGGA--LLFRADVTQDEELDALFAGVKEAFGGL-DY 89
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
LV+ + ++ +D+ +V S AV + + G
Sbjct: 90 LVHAIAFAPREAMEGRYIDTRRQDWLLALEV--------SAYSLVAVARRAEPLLREGGG 141
Query: 257 IIN---IGS--IVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETP 311
I+ S +V + M KA +EA + +A E+ G+R N I G + T
Sbjct: 142 IVTLTYYASEKVVPKYNVMA-----IAKAALEASVRYLAYELGPKGVRVNAISAGPVRTV 196
Query: 312 MTTSVPD--KVKETFTRLIPLKR 332
S+P K+ + + PL+R
Sbjct: 197 AARSIPGFTKMYDRVAQTAPLRR 219
Score = 35.6 bits (83), Expect = 0.022
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 30/173 (17%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
L DV+ + + +KE F + LV+ + ++ +D+ +
Sbjct: 61 LLFRADVTQDEELDALFAGVKEAFGGL-DYLVHAIAFAPREAMEGRYIDTRRQDWLLALE 119
Query: 65 VNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGS--IVGQMGNMGQSNYAATKAG 114
V S AV + + G I+ S +V + M KA
Sbjct: 120 V--------SAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMA-----IAKAA 166
Query: 115 VEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
+EA + +A E+ G+R N I G + T S+P K+ + + PL+R
Sbjct: 167 LEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRR 219
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 55.7 bits (135), Expect = 7e-09
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +E+ + +A+++ IR N + G I T ++ + D + + P ++
Sbjct: 162 KAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSL 221
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
EE+G +L S SS ++G + V G
Sbjct: 222 EEVGNAGMYLLSSLSSGVSGEVHFVDAG 249
Score = 38.7 bits (91), Expect = 0.002
Identities = 32/204 (15%), Positives = 76/204 (37%), Gaps = 40/204 (19%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T + + +++ R+ P+ + S +DVS + +++K+ +
Sbjct: 37 FTYLNESLEK---RVRPI---AQELNSP--YVYELDVSKEEHFKSLYNSVKKDLGSL-DF 87
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
+V+ + L+ ++ F ++ S + L + S
Sbjct: 88 IVHSVAFAPKEALEGSLLETSKSAFNTAMEI--------SVYSLIELTNTLKPLLNNGAS 139
Query: 257 IIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
++ +GS M + MG KA +E+ + +A+++ IR N + G I T
Sbjct: 140 VLTLSYLGS-TKYMAHYNVMG-----LAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
Query: 311 PMTTSVPD--KVKETFTRLIPLKR 332
++ + D + + PL++
Sbjct: 194 LASSGIADFRMILKWNEINAPLRK 217
Score = 35.6 bits (83), Expect = 0.022
Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 32/174 (18%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
+DVS + +++K+ + +V+ + L+ ++ F +
Sbjct: 59 YVYELDVSKEEHFKSLYNSVKKDLGSL-DFIVHSVAFAPKEALEGSLLETSKSAFNTAME 117
Query: 65 VNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGSIVGQMGN---MGQSNYAATKA 113
+ S + L + S++ +GS M + MG KA
Sbjct: 118 I--------SVYSLIELTNTLKPLLNNGASVLTLSYLGS-TKYMAHYNVMG-----LAKA 163
Query: 114 GVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
+E+ + +A+++ IR N + G I T + + D + + PL++
Sbjct: 164 ALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK 217
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 55.3 bits (134), Expect = 9e-09
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA + +A+ + G+R N I G I+T + + K+ + P KR
Sbjct: 171 KAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTI 230
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
E++G FL SD +S +T ++ V G
Sbjct: 231 EQVGNAGAFLLSDLASGVTAEVMHVDSG 258
Score = 36.4 bits (85), Expect = 0.013
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 39/204 (19%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T V D+ K+ R+ GS L P DV++ + I +++K + +
Sbjct: 45 FTYVGDRFKD---RITEF---AAEFGSE--LVFPCDVADDAQIDALFASLKTHWDSL-DG 95
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
LV+ G FL ++ N + +S A+ K + S
Sbjct: 96 LVHSIGFAPREAIAGDFLDGLTRE-------NFRIAHDISAYSFPALAKAALPMLSDDAS 148
Query: 257 IIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
++ +G+ + N MG KA +EA + +A+ + G+R N I G I+T
Sbjct: 149 LLTLSYLGAERA-IPNYNTMG-----LAKAALEASVRYLAVSLGAKGVRVNAISAGPIKT 202
Query: 311 PMTTSVPD--KVKETFTRLIPLKR 332
+ + K+ + PLKR
Sbjct: 203 LAASGIKSFGKILDFVESNSPLKR 226
Score = 33.3 bits (77), Expect = 0.12
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 31/174 (17%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
L P DV++ + I +++K + + LV+ G FL ++
Sbjct: 67 LVFPCDVADDAQIDALFASLKTHWDSL-DGLVHSIGFAPREAIAGDFLDGLTRE------ 119
Query: 65 VNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGSIVGQMGN---MGQSNYAATKA 113
N + +S A+ K + S++ +G+ + N MG KA
Sbjct: 120 -NFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA-IPNYNTMG-----LAKA 172
Query: 114 GVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
+EA + +A+ + G+R N I G I+T + + K+ + PLKR
Sbjct: 173 ALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKR 226
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 55.3 bits (134), Expect = 1e-08
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA + A+ + GI+ N + G I+T + + + K+ + + P K+
Sbjct: 183 KASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDI 242
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
E+G + FL SD ++ ITG ++ V G
Sbjct: 243 MEVGNTVAFLCSDMATGITGEVVHVDAG 270
Score = 34.1 bits (79), Expect = 0.073
Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSR-----------PPNVL----VNCAGITRDNWFLKLT 222
LP DV + I + + + P + L ++C +TR+ + +
Sbjct: 80 LPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDC--VTREGFSI--- 134
Query: 223 EKDFQQVFDVNLKGTFLVS----QAVCKELVE--TKSSGSIIN---IGSIVGQMGN---M 270
+S A+ KE + S++ IG+ M + M
Sbjct: 135 --------------AHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA-MPSYNTM 179
Query: 271 GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTSVPD--KVKETFTRLI 328
G KA +EA + A+ + GI+ N + G I+T + + + K+ + +
Sbjct: 180 G-----VAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS 234
Query: 329 PLKR 332
PLK+
Sbjct: 235 PLKK 238
Score = 33.3 bits (77), Expect = 0.13
Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSR-----------PPNVL----VNCAGITRDNWFLKLT 55
LP DV + I + + + P + L ++C +TR+ + +
Sbjct: 80 LPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDC--VTREGFSI--- 134
Query: 56 EKDFQQVFDVNLKGTFLVS----QAVCKELVE--TKSSGSIIN---IGSIVGQMGN---M 103
+S A+ KE + S++ IG+ M + M
Sbjct: 135 --------------AHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA-MPSYNTM 179
Query: 104 GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLI 161
G KA +EA + A+ + GI+ N + G I+T + + + K+ + +
Sbjct: 180 G-----VAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS 234
Query: 162 PLKR 165
PLK+
Sbjct: 235 PLKK 238
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 54.9 bits (133), Expect = 1e-08
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA ++A K +A ++ IR N I G I T + D + + P +R P
Sbjct: 165 KASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTP 224
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
EE+G+ FL SD S ITG + V G
Sbjct: 225 EEVGDTAAFLFSDMSRGITGENLHVDSG 252
Score = 41.4 bits (98), Expect = 3e-04
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 38/204 (18%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T +++++ + L + + LP DV+N + I T ++IKE+ +
Sbjct: 38 FTYAGERLEK---SVHEL---AGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVI-HG 90
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
+ +C +L F ++ S AV K GS
Sbjct: 91 IAHCIAFANKEELVGEYLNTNRDGFLLAHNI--------SSYSLTAVVKAARPMMTEGGS 142
Query: 257 IIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
I+ +G + M N MG KA ++A K +A ++ IR N I G I T
Sbjct: 143 IVTLTYLGGELV-MPNYNVMG-----VAKASLDASVKYLAADLGKENIRVNSISAGPIRT 196
Query: 311 PMTTSVPD--KVKETFTRLIPLKR 332
+ D + + PL+R
Sbjct: 197 LSAKGISDFNSILKDIEERAPLRR 220
Score = 37.5 bits (88), Expect = 0.005
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 32/179 (17%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDF 59
+ + LP DV+N + I T ++IKE+ + + +C +L F
Sbjct: 57 DRNDSIILPCDVTNDAEIETCFASIKEQVGVI-HGIAHCIAFANKEELVGEYLNTNRDGF 115
Query: 60 QQVFDVNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGSIVGQMGN---MGQSNY 108
++ S AV K GSI+ +G + M N MG
Sbjct: 116 LLAHNI--------SSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV-MPNYNVMG---- 162
Query: 109 AATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
KA ++A K +A ++ IR N I G I T + D + + PL+R
Sbjct: 163 -VAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRR 220
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 55.3 bits (134), Expect = 1e-08
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +E+ + +A ++A G R N I G ++T + + E T++ PF +
Sbjct: 178 KAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITI 237
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
E++G+ FL SD + ITG ++ V G
Sbjct: 238 EDVGDTAVFLCSDWARAITGEVVHVDNG 265
Score = 38.0 bits (89), Expect = 0.004
Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T K+++ R+ + K GS L + DVS I ++E + ++
Sbjct: 52 FTYATPKLEK---RVREI---AKGFGSD--LVVKCDVSLDEDIKNLKKFLEENWGSL-DI 102
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVE--TKSSG 255
+V+ + + + F+ D+ S A+ +EL+ +G
Sbjct: 103 IVHSIAYAPKEEFKGGVIDTSREGFKIAMDI--------SVYSLIALTRELLPLMEGRNG 154
Query: 256 SIIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIE 309
+I+ G+ + + MG KA +E+ + +A ++A G R N I G ++
Sbjct: 155 AIVTLSYYGAEKV-VPHYNVMG-----IAKAALESTVRYLAYDIAKHGHRINAISAGPVK 208
Query: 310 TPMTTSVPD--KVKETFTRLIPLKR 332
T S+ + E T++ P +
Sbjct: 209 TLAAYSITGFHLLMEHTTKVNPFGK 233
Score = 35.3 bits (82), Expect = 0.034
Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
L + DVS I ++E + +++V+ + + + F+ D
Sbjct: 74 LVVKCDVSLDEDIKNLKKFLEENWGSL-DIIVHSIAYAPKEEFKGGVIDTSREGFKIAMD 132
Query: 65 VNLKGTFLVS----QAVCKELVE--TKSSGSIIN---IGSIVGQMGN---MGQSNYAATK 112
+ S A+ +EL+ +G+I+ G+ + + MG K
Sbjct: 133 I--------SVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV-VPHYNVMG-----IAK 178
Query: 113 AGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
A +E+ + +A ++A G R N I G ++T S+ + E T++ P +
Sbjct: 179 AALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGK 233
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 54.9 bits (133), Expect = 2e-08
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA K +A+++ IR N I G I+T + + D + + P +R
Sbjct: 187 KAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTI 246
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
+E+G+V + SD S +TG + G
Sbjct: 247 DEVGDVGLYFLSDLSRSVTGEVHHADSG 274
Score = 36.8 bits (86), Expect = 0.010
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 40/204 (19%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
T D +K+ R+ PL + G+ ++ DV++ ++I T+++K+ + +
Sbjct: 62 FTYQGDALKK---RVEPL---AEELGAF--VAGHCDVADAASIDAVFETLEKKWGKL-DF 112
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
LV+ G + ++ +E +F + S AV + + GS
Sbjct: 113 LVHAIGFSDKDELTGRYIDTSEANFTNTMLI--------SVYSLTAVSRRAEKLMADGGS 164
Query: 257 IIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
I+ G+ M N MG KA +EA K +A+++ IR N I G I+T
Sbjct: 165 ILTLTYYGA-EKVMPNYNVMG-----VAKAALEASVKYLAVDLGPQNIRVNAISAGPIKT 218
Query: 311 PMTTSVPD--KVKETFTRLIPLKR 332
+ + D + + PL+R
Sbjct: 219 LAASGIGDFRYILKWNEYNAPLRR 242
Score = 34.5 bits (80), Expect = 0.059
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 32/174 (18%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
++ DV++ ++I +++K+ + + LV+ G + ++ +E +F
Sbjct: 84 VAGHCDVADAASIDAVFETLEKKWGKL-DFLVHAIGFSDKDELTGRYIDTSEANFTNTML 142
Query: 65 VNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGSIVGQMGN---MGQSNYAATKA 113
+ S AV + + GSI+ G+ M N MG KA
Sbjct: 143 I--------SVYSLTAVSRRAEKLMADGGSILTLTYYGA-EKVMPNYNVMG-----VAKA 188
Query: 114 GVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
+EA K +A+++ IR N I G I+T + + D + + PL+R
Sbjct: 189 ALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRR 242
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 54.5 bits (132), Expect = 2e-08
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA + +A M G+R N I G I T + + D K+ + P +R
Sbjct: 166 KASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTI 225
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
E++G FL SD S+ I+G ++ V GG
Sbjct: 226 EDVGNSAAFLCSDLSAGISGEVVHVDGG 253
Score = 35.6 bits (83), Expect = 0.021
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 59/214 (27%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSR---- 201
T DK+K R+ GS + L DV+ ++I T + + + + +
Sbjct: 40 FTYQNDKLKG---RVEEF---AAQLGSD--IVLQCDVAEDASIDTMFAELGKVWPKFDGF 91
Query: 202 -------PPNVL----VNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCK 246
P + L VN +TR+ + + +S A+ K
Sbjct: 92 VHSIGFAPGDQLDGDYVNA--VTREGFKI-----------------AHDISSYSFVAMAK 132
Query: 247 ELVET-KSSGSIIN---IGS--IVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRC 300
+++ +G+ + MG KA +EA + +A M G+R
Sbjct: 133 ACRSMLNPGSALLTLSYLGAERAIPNYNVMG-----LAKASLEANVRYMANAMGPEGVRV 187
Query: 301 NVILPGFIETPMTTSVPD--KVKETFTRLIPLKR 332
N I G I T + + D K+ + P++R
Sbjct: 188 NAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR 221
Score = 33.3 bits (77), Expect = 0.12
Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 51/184 (27%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSR-----------PPNVL----VNCAGITRDNWFLK 53
+ L DV+ ++I T + + + + + P + L VN +TR+ + +
Sbjct: 62 IVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNA--VTREGFKI- 118
Query: 54 LTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGS--IVGQMGNM 103
+S A+ K +++ +G+ + M
Sbjct: 119 ----------------AHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 162
Query: 104 GQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLI 161
G KA +EA + +A M G+R N I G I T + + D K+ +
Sbjct: 163 G-----LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 217
Query: 162 PLKR 165
P++R
Sbjct: 218 PIRR 221
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 54.6 bits (132), Expect = 2e-08
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTTCVPD--KVKETFTRLIPFKRFGKP 431
KA +EA K +A+++ IR N I G + T ++ + D + P +R
Sbjct: 186 KAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTL 245
Query: 432 EEIGEVICFLASDRSSYITGTLIKVTGG 459
+++G +L SD TG + V G
Sbjct: 246 DDVGGAALYLLSDLGRGTTGETVHVDCG 273
Score = 36.9 bits (86), Expect = 0.011
Identities = 37/204 (18%), Positives = 78/204 (38%), Gaps = 40/204 (19%)
Query: 146 ITSVPDKVKETFTRLIPLKRFGKPEGSSTHLSLPMDVSNTSTISTAMSTIKEKFSRPPNV 205
+T + + K+ R+ PL + G L++P DVS+ ++ + E++ +
Sbjct: 61 LTYLSETFKK---RVDPL---AESLGVK--LTVPCDVSDAESVDNMFKVLAEEWGSL-DF 111
Query: 206 LVNCAGITR----DNWFLKLTEKDFQQVFDVNLKGTFLVS----QAVCKELVET-KSSGS 256
+V+ + ++ + +F + S + + + GS
Sbjct: 112 VVHAVAFSDKNELKGRYVDTSLGNFLTSMHI--------SCYSFTYIASKAEPLMTNGGS 163
Query: 257 IIN---IGSIVGQMGN---MGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
I+ G+ + + MG KA +EA K +A+++ IR N I G + T
Sbjct: 164 ILTLSYYGA-EKVVPHYNVMG-----VCKAALEASVKYLAVDLGKQQIRVNAISAGPVRT 217
Query: 311 PMTTSVPD--KVKETFTRLIPLKR 332
++ + D + PL+R
Sbjct: 218 LASSGISDFHYILTWNKYNSPLRR 241
Score = 34.2 bits (79), Expect = 0.069
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 32/174 (18%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR----DNWFLKLTEKDFQQVFD 64
L++P DVS+ ++ + E++ + +V+ + ++ + +F
Sbjct: 83 LTVPCDVSDAESVDNMFKVLAEEWGSL-DFVVHAVAFSDKNELKGRYVDTSLGNFLTSMH 141
Query: 65 VNLKGTFLVS----QAVCKELVET-KSSGSIIN---IGSIVGQMGN---MGQSNYAATKA 113
+ S + + + GSI+ G+ + + MG KA
Sbjct: 142 I--------SCYSFTYIASKAEPLMTNGGSILTLSYYGA-EKVVPHYNVMG-----VCKA 187
Query: 114 GVEAFTKSVAMEMATFGIRCNVILPGFIETPMITSVPD--KVKETFTRLIPLKR 165
+EA K +A+++ IR N I G + T + + D + PL+R
Sbjct: 188 ALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRR 241
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 54.8 bits (132), Expect = 2e-08
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 374 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMTTCVPDKVKETFTRLI--------P 424
KA +E+ T+++A E +G+R N I G +++ + + +++F P
Sbjct: 197 KAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAP 256
Query: 425 FKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
+R +++G FL S + ++G + V GL
Sbjct: 257 LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGL 292
Score = 31.7 bits (72), Expect = 0.51
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 279 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLI--------P 329
KA +E+ T+++A E +G+R N I G +++ +++ +++F P
Sbjct: 197 KAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAP 256
Query: 330 LKR 332
L+R
Sbjct: 257 LRR 259
Score = 30.9 bits (70), Expect = 0.72
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 112 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLI--------P 162
KA +E+ T+++A E +G+R N I G +++ +++ +++F P
Sbjct: 197 KAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAP 256
Query: 163 LKR 165
L+R
Sbjct: 257 LRR 259
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 54.1 bits (130), Expect = 3e-08
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 374 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMTTCVPDKVKETFTRLI--------P 424
KA +E+ +++A E +R N I G +++ + + +TF L P
Sbjct: 210 KAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAP 269
Query: 425 FKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
++ + +++G FL S + +TG + V GL
Sbjct: 270 LQKELESDDVGRAALFLLSPLARAVTGATLYVDNGL 305
Score = 31.3 bits (71), Expect = 0.63
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 279 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLI--------P 329
KA +E+ +++A E +R N I G +++ +++ +TF L P
Sbjct: 210 KAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAP 269
Query: 330 LKR 332
L++
Sbjct: 270 LQK 272
Score = 30.6 bits (69), Expect = 0.92
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 112 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMITSVPDKVKETFTRLI--------P 162
KA +E+ +++A E +R N I G +++ +++ +TF L P
Sbjct: 210 KAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAP 269
Query: 163 LKR 165
L++
Sbjct: 270 LQK 272
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 52.2 bits (126), Expect = 8e-08
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 374 KAGVEAFTKSVAMEMATFGIRCNVILPGFIETPMTT---------CVPDKVKETFTRLI- 423
K+ +E+ + VA E +G+R N++ G P+ T + ++ L
Sbjct: 165 KSALESVNRFVAREAGKYGVRSNLVAAG----PIRTLAMSAIVGGALGEEAGAQIQLLEE 220
Query: 424 ------PFKR-FGKPEEIGEVICFLASDRSSYITGTLIKVTGG 459
P + + +C L SD TG +I GG
Sbjct: 221 GWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263
Score = 41.1 bits (97), Expect = 4e-04
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 178 LPMDVSNTSTISTAMSTIKEKFSRPPNV--LVNCAGIT-----RDNWFLKLTEKDFQQVF 230
L +DV N +++ + E + +V+ G N F D +
Sbjct: 61 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGI 120
Query: 231 DVNLKGTFLVS----QAVCKELVET-KSSGSIINI---GSIVGQMGN---MGQSNYAATK 279
+ S ++ K L+ GSI+ + S M M K
Sbjct: 121 HI--------SAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--MPAYNWMT-----VAK 165
Query: 280 AGVEAFTKSVAMEMATFGIRCNVILPGFIET 310
+ +E+ + VA E +G+R N++ G I T
Sbjct: 166 SALESVNRFVAREAGKYGVRSNLVAAGPIRT 196
Score = 41.1 bits (97), Expect = 4e-04
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNV--LVNCAGIT-----RDNWFLKLTEKDFQQVF 63
L +DV N +++ + E + +V+ G N F D +
Sbjct: 61 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGI 120
Query: 64 DVNLKGTFLVS----QAVCKELVET-KSSGSIINI---GSIVGQMGN---MGQSNYAATK 112
+ S ++ K L+ GSI+ + S M M K
Sbjct: 121 HI--------SAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--MPAYNWMT-----VAK 165
Query: 113 AGVEAFTKSVAMEMATFGIRCNVILPGFIET 143
+ +E+ + VA E +G+R N++ G I T
Sbjct: 166 SALESVNRFVAREAGKYGVRSNLVAAGPIRT 196
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 51.2 bits (123), Expect = 2e-07
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 374 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIETPMTTCVPDKVKETFTRLI-------PF 425
KA +E+ T+ +A E IR N I G + + + +I P
Sbjct: 196 KAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGF-----IDTMIEYSYNNAPI 250
Query: 426 KRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
++ +E+G FL S +S ITG I V GL
Sbjct: 251 QKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285
Score = 28.5 bits (64), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 112 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIET 143
KA +E+ T+ +A E IR N I G + +
Sbjct: 196 KAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228
Score = 28.5 bits (64), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 279 KAGVEAFTKSVAMEM-ATFGIRCNVILPGFIET 310
KA +E+ T+ +A E IR N I G + +
Sbjct: 196 KAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV++ T++ +++I + P +V+ AG+ D LT + QV + G +
Sbjct: 592 DVADRETLAKVLASIPD--EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNL 649
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFT 119
+ +++ S+ G +G+ GQ NYAA + ++A
Sbjct: 650 LEL-------IDPDVALVLFSSVSGVLGSGGQGNYAAANSFLDALA 688
Score = 48.2 bits (115), Expect = 4e-06
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV++ T++ +++I + P +V+ AG+ D LT + QV + G +
Sbjct: 592 DVADRETLAKVLASIPD--EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNL 649
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFT 286
+ +++ S+ G +G+ GQ NYAA + ++A
Sbjct: 650 LEL-------IDPDVALVLFSSVSGVLGSGGQGNYAAANSFLDALA 688
Score = 36.6 bits (85), Expect = 0.019
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAFT 381
S+ G +G+ GQ NYAA + ++A
Sbjct: 664 SVSGVLGSGGQGNYAAANSFLDALA 688
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 47.2 bits (112), Expect = 1e-05
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFL- 72
+ S+ + ++ + P + N A + RD T + FQ V GT
Sbjct: 1945 NASSLDGARSLITEATQ--LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 73 --VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 118
V++ C EL + S+ GN GQ+NY + +E
Sbjct: 2003 DRVTREACPEL------DYFVIFSSVSCGRGNAGQANYGFANSAMERI 2044
Score = 46.4 bits (110), Expect = 2e-05
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFL- 239
+ S+ + ++ + P + N A + RD T + FQ V GT
Sbjct: 1945 NASSLDGARSLITEATQ--LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 240 --VSQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 285
V++ C EL + S+ GN GQ+NY + +E
Sbjct: 2003 DRVTREACPEL------DYFVIFSSVSCGRGNAGQANYGFANSAMERI 2044
Score = 32.9 bits (75), Expect = 0.25
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAF 380
S+ GN GQ+NY + +E
Sbjct: 2021 SVSCGRGNAGQANYGFANSAMERI 2044
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 38.7 bits (90), Expect = 0.002
Identities = 54/296 (18%), Positives = 94/296 (31%), Gaps = 78/296 (26%)
Query: 179 PMDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRD--NWFLKLTEKDFQQVFDVNLKG 236
++ TI + I +K+ + N+LV+ ++ L + K +
Sbjct: 91 RYNMLQNYTIEDVANLIHQKYGKI-NMLVHSLANAKEVQKDLLNTSRKGYLDALSK---- 145
Query: 237 TFLVSQ----AVCKELVET-KSSGSIIN---IGS--IVGQMGN-MGQSNYAATKAGVEAF 285
S ++CK V K SII+ S +V G M + KA +E+
Sbjct: 146 ----SSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMS-----SAKAALESD 196
Query: 286 TKSVAMEM-ATFGIRCNVILPGFIETPMTTSVPDKVKETFTRLIPLKRFGKPEAVCKELV 344
T+ +A + + IR N I G PLK
Sbjct: 197 TRVLAYHLGRNYNIRINTISAG----------------------PLK------------- 221
Query: 345 ETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAFTKSVAMEMATFGIRCNVILPGFIE 404
++++ +I + + N ++ + + + + I
Sbjct: 222 -SRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFI------ 274
Query: 405 TPMTTCVPDKVKETFTRLIPFKRFGKPEEIGEVICFLASDRSSYITGTLIKVTGGL 460
D E + P ++ +IG V FL S S ITG I V GL
Sbjct: 275 --------DYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGL 322
Score = 28.7 bits (64), Expect = 4.2
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 12 PMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD--NWFLKLTEKDFQQVFDVNLKG 69
++ TI + I +K+ + N+LV+ ++ L + K +
Sbjct: 91 RYNMLQNYTIEDVANLIHQKYGKI-NMLVHSLANAKEVQKDLLNTSRKGYLDALSK---- 145
Query: 70 TFLVSQ----AVCKELVET-KSSGSIIN---IGS--IVGQMGN-MGQSNYAATKAGVEAF 118
S ++CK V K SII+ S +V G M + KA +E+
Sbjct: 146 ----SSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPGYGGGMS-----SAKAALESD 196
Query: 119 TKSVAMEM-ATFGIRCNVILPGFIET 143
T+ +A + + IR N I G +++
Sbjct: 197 TRVLAYHLGRNYNIRINTISAGPLKS 222
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 37.8 bits (88), Expect = 0.006
Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
D+++ + ++ + + + P + +++ +V +
Sbjct: 323 DLTDAEAAARLLAGVSD--AHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHL 380
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 118
+ + + ++ S+ G GQ YAA A ++A
Sbjct: 381 DRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAAGTAFLDAL 425
Score = 37.5 bits (87), Expect = 0.008
Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
D+++ + ++ + + + P + +++ +V +
Sbjct: 323 DLTDAEAAARLLAGVSD--AHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHL 380
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 285
+ + + ++ S+ G GQ YAA A ++A
Sbjct: 381 DRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAAGTAFLDAL 425
Score = 32.1 bits (73), Expect = 0.41
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAF 380
S+ G GQ YAA A ++A
Sbjct: 402 SVAAIWGGAGQGAYAAGTAFLDAL 425
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 35.0 bits (81), Expect = 0.048
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 33/141 (23%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
++ + + + A+ + + ++ AG + +Q+ L T
Sbjct: 64 EMLDHAGLERALRGL--------DGVIFSAGYYPSRP------RRWQEEVASALGQTNPF 109
Query: 74 SQAVCKE-----LVETKSSGSIINIG--------SIVGQMGNMGQSNYAATKAGVEAFTK 120
A C + ++ S + + G+S+Y K ++
Sbjct: 110 YAA-CLQARVPRILYV-GSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDE--- 164
Query: 121 SVAMEMATFGIRCNVILPGFI 141
A E A G+ + +PG +
Sbjct: 165 -QAREQARNGLPVVIGIPGMV 184
Score = 34.2 bits (79), Expect = 0.070
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 33/141 (23%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
++ + + + A+ + + ++ AG + +Q+ L T
Sbjct: 64 EMLDHAGLERALRGL--------DGVIFSAGYYPSRP------RRWQEEVASALGQTNPF 109
Query: 241 SQAVCKE-----LVETKSSGSIINIG--------SIVGQMGNMGQSNYAATKAGVEAFTK 287
A C + ++ S + + G+S+Y K ++
Sbjct: 110 YAA-CLQARVPRILYV-GSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDE--- 164
Query: 288 SVAMEMATFGIRCNVILPGFI 308
A E A G+ + +PG +
Sbjct: 165 -QAREQARNGLPVVIGIPGMV 184
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 33.2 bits (76), Expect = 0.20
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 33 SRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIIN 92
+ PPN + + AGI D L+ + F+ V + G L+ Q + K + +
Sbjct: 333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQL----TADIKGLDAFVL 388
Query: 93 IGSIVGQMGNMGQSNYAATKAGVEAF 118
S+ G GN GQ YAA A ++A
Sbjct: 389 FSSVTGTWGNAGQGAYAAANAALDAL 414
Score = 33.2 bits (76), Expect = 0.20
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 200 SRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIIN 259
+ PPN + + AGI D L+ + F+ V + G L+ Q + K + +
Sbjct: 333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQL----TADIKGLDAFVL 388
Query: 260 IGSIVGQMGNMGQSNYAATKAGVEAF 285
S+ G GN GQ YAA A ++A
Sbjct: 389 FSSVTGTWGNAGQGAYAAANAALDAL 414
Score = 32.5 bits (74), Expect = 0.29
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAF 380
S+ G GN GQ YAA A ++A
Sbjct: 391 SVTGTWGNAGQGAYAAANAALDAL 414
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 32.4 bits (74), Expect = 0.30
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 73
DV++ ++ + I + P + + + A D LT + ++ + G +
Sbjct: 287 DVTDRESVRELLGGIGD--DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNL 344
Query: 74 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 118
EL + + S G G YA A ++
Sbjct: 345 H-----ELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGL 384
Score = 32.0 bits (73), Expect = 0.43
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 181 DVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKGTFLV 240
DV++ ++ + I + P + + + A D LT + ++ + G +
Sbjct: 287 DVTDRESVRELLGGIGD--DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNL 344
Query: 241 SQAVCKELVETKSSGSIINIGSIVGQMGNMGQSNYAATKAGVEAF 285
EL + + S G G YA A ++
Sbjct: 345 H-----ELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGL 384
Score = 31.6 bits (72), Expect = 0.55
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAF 380
S G G YA A ++
Sbjct: 361 SFASAFGAPGLGGYAPGNAYLDGL 384
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 31.9 bits (73), Expect = 0.38
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 56 EKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSI--VGQMGNMG--------- 104
EK F+Q+ N+ G + + +A I+ S +G
Sbjct: 77 EKPFEQILQGNIIGLYNLYEAARAHGQPR-----IVFASSNHTIGYYPQTERLGPDVPAR 131
Query: 105 -QSNYAATKAGVEAFTKSVAMEMATFGIRCNVIL 137
Y +K E + FG ++
Sbjct: 132 PDGLYGVSKCFGENLARMYF---DKFGQET-ALV 161
Score = 31.9 bits (73), Expect = 0.38
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 223 EKDFQQVFDVNLKGTFLVSQAVCKELVETKSSGSIINIGSI--VGQMGNMG--------- 271
EK F+Q+ N+ G + + +A I+ S +G
Sbjct: 77 EKPFEQILQGNIIGLYNLYEAARAHGQPR-----IVFASSNHTIGYYPQTERLGPDVPAR 131
Query: 272 -QSNYAATKAGVEAFTKSVAMEMATFGIRCNVIL 304
Y +K E + FG ++
Sbjct: 132 PDGLYGVSKCFGENLARMYF---DKFGQET-ALV 161
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 31.4 bits (72), Expect = 0.50
Identities = 9/70 (12%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 13 MDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 71
+++ +++ + + + P+V+V+CA R D + E +N+ +
Sbjct: 44 VNLLDSNAVHHIIHDFQ------PHVIVHCAAERRPD-----VVENQPDAASQLNVDASG 92
Query: 72 LVSQAVCKEL 81
+++ +
Sbjct: 93 NLAKE-AAAV 101
Score = 31.1 bits (71), Expect = 0.69
Identities = 9/70 (12%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 238
+++ +++ + + + P+V+V+CA R D + E +N+ +
Sbjct: 44 VNLLDSNAVHHIIHDFQ------PHVIVHCAAERRPD-----VVENQPDAASQLNVDASG 92
Query: 239 LVSQAVCKEL 248
+++ +
Sbjct: 93 NLAKE-AAAV 101
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 31.4 bits (72), Expect = 0.51
Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 13 MDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 71
+D+++ + + + P+V++N A +T D E + ++ + +N +
Sbjct: 41 LDLTDFPRLEDFIIKKR------PDVIINAAAMTDVD-----KCEIEKEKAYKINAEAVR 89
Query: 72 LVSQAVCKEL 81
+ +A K +
Sbjct: 90 HIVRA-GKVI 98
Score = 31.0 bits (71), Expect = 0.61
Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 238
+D+++ + + + P+V++N A +T D E + ++ + +N +
Sbjct: 41 LDLTDFPRLEDFIIKKR------PDVIINAAAMTDVD-----KCEIEKEKAYKINAEAVR 89
Query: 239 LVSQAVCKEL 248
+ +A K +
Sbjct: 90 HIVRA-GKVI 98
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 31.6 bits (72), Expect = 0.61
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 95 SIVGQMGNMGQSNYAATKAGVEAF 118
S G+ GQ YAA A ++A
Sbjct: 375 SGAAVWGSGGQPGYAAANAYLDAL 398
Score = 31.6 bits (72), Expect = 0.61
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 262 SIVGQMGNMGQSNYAATKAGVEAF 285
S G+ GQ YAA A ++A
Sbjct: 375 SGAAVWGSGGQPGYAAANAYLDAL 398
Score = 31.6 bits (72), Expect = 0.61
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 357 SIVGQMGNMGQSNYAATKAGVEAF 380
S G+ GQ YAA A ++A
Sbjct: 375 SGAAVWGSGGQPGYAAANAYLDAL 398
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.0 bits (71), Expect = 0.81
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 13 MDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 71
+D++N ++ + K PNV++NCA T D E+ + + +N G
Sbjct: 47 LDITNVLAVNKFFNEKK------PNVVINCAAHTAVD-----KCEEQYDLAYKINAIGPK 95
Query: 72 LVSQAVCKEL 81
++ A +
Sbjct: 96 NLAAA-AYSV 104
Score = 30.2 bits (69), Expect = 1.2
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 238
+D++N ++ + K PNV++NCA T D E+ + + +N G
Sbjct: 47 LDITNVLAVNKFFNEKK------PNVVINCAAHTAVD-----KCEEQYDLAYKINAIGPK 95
Query: 239 LVSQAVCKEL 248
++ A +
Sbjct: 96 NLAAA-AYSV 104
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 30.6 bits (70), Expect = 0.93
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 13 MDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 71
+D++N S + + I+ P+++++CA T+ D EK+ + +N G
Sbjct: 40 LDITNISQVQQVVQEIR------PHIIIHCAAYTKVD-----QAEKERDLAYVINAIGAR 88
Query: 72 LVSQAVCKEL 81
V+ A + +
Sbjct: 89 NVAVA-SQLV 97
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 180 MDVSNTSTISTAMSTIKEKFSRPPNVLVNCAGITR-DNWFLKLTEKDFQQVFDVNLKGTF 238
+D++N S + + I+ P+++++CA T+ D EK+ + +N G
Sbjct: 40 LDITNISQVQQVVQEIR------PHIIIHCAAYTKVD-----QAEKERDLAYVINAIGAR 88
Query: 239 LVSQAVCKEL 248
V+ A + +
Sbjct: 89 NVAVA-SQLV 97
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.0 bits (68), Expect = 1.4
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 56 EKDFQQVFDVNLKGTFLVSQAV----CKELVETKSSGSII----NIGSIVGQMGNMGQSN 107
E+ + + N+ G + + +A +V SS I I ++ S
Sbjct: 76 ERPWNDILQANIIGAYNLYEAARNLGKPRIVFA-SSNHTIGYYPRTTRIDTEVPRRPDSL 134
Query: 108 YAATKAGVEAFTKSVAMEMATFGIRCNVIL 137
Y +K E F I + +
Sbjct: 135 YGLSKCFGEDLASLYY---HKFDIET-LNI 160
Score = 30.0 bits (68), Expect = 1.4
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 223 EKDFQQVFDVNLKGTFLVSQAV----CKELVETKSSGSII----NIGSIVGQMGNMGQSN 274
E+ + + N+ G + + +A +V SS I I ++ S
Sbjct: 76 ERPWNDILQANIIGAYNLYEAARNLGKPRIVFA-SSNHTIGYYPRTTRIDTEVPRRPDSL 134
Query: 275 YAATKAGVEAFTKSVAMEMATFGIRCNVIL 304
Y +K E F I + +
Sbjct: 135 YGLSKCFGEDLASLYY---HKFDIET-LNI 160
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation,
S-nitrosylation, zinc, MMA, ADMA, acetylation,
metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB:
2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A*
2jai_A*
Length = 275
Score = 30.0 bits (67), Expect = 1.4
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 125 EMATFGIRCNVILPGFIETPMITSVPDKVKETFTRL-------IPLKRFGKPEGSSTHLS 177
+ A I N+ G + + + + +L + K +G T S
Sbjct: 210 DTAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSNSELEKVDGLLTXSS 269
Query: 178 LP 179
+
Sbjct: 270 VL 271
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell
cycle, DNA damage, DNA repair, DNA-binding, ligase, Met
binding, nuclear protein; 2.00A {Homo sapiens} SCOP:
d.15.1.1
Length = 78
Score = 26.9 bits (60), Expect = 4.1
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 1 MLTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPN 37
+ G TH +S + + I+E F P
Sbjct: 9 TMDGRQTHTVD--SLSRLTKVEELRRKIQELFHVEPG 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 26.2 bits (58), Expect = 7.8
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 1 MLTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPN 37
+ GS T DVS +TI + F P
Sbjct: 14 TIDGSKTCTIE--DVSRKATIEELRERVWALFDVRPE 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.376
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,714,923
Number of extensions: 404958
Number of successful extensions: 2637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 666
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)