BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3450
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 113/198 (57%), Gaps = 18/198 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF + + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF------RFS----EDAFNSTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Query: 234 RALQRNGMERLWRSNKVG 251
+ M++ W++ G
Sbjct: 168 DIKAK--MDKNWKATAAG 183
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 103/177 (58%), Gaps = 16/177 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
DYL K LL+GDS VGK +L RF D + S F S G + +K TI
Sbjct: 4 DYLFKLLLIGDSGVGKTCVL---------FRFSEDAFN-STFISTIG-----IDFKIRTI 48
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +EEHA
Sbjct: 49 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108
Query: 178 PG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 109 SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 14 DYLLKFLLVGDSDVGKQEIL 33
DYL K LL+GDS VGK +L
Sbjct: 4 DYLFKLLLIGDSGVGKTCVL 23
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 16/180 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+G+S VGK +L RF D + + + S G + +K
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLL------RFS----DDTYTNDYISTIG-----VDFKIK 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 49 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108
Query: 176 HAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R+
Sbjct: 109 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 16/180 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+G+S VGK +L RF D + + + S G + +K
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLL------RFS----DDTYTNDYISTIG-----VDFKIK 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 49 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108
Query: 176 HAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R+
Sbjct: 109 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 16/180 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+G+S VGK +L RF D + + + S G + +K
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLL------RFS----DDTYTNDYISTIG-----VDFKIK 61
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 62 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 121
Query: 176 HAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R+
Sbjct: 122 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 181
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 20/192 (10%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL K +L+GDS VGK +LS RF R + S+S + + T +
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATRS 46
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +H
Sbjct: 47 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 106
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TEL 231
A + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE+
Sbjct: 107 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
Query: 232 SRRALQRNGMER 243
R Q+ +R
Sbjct: 167 YRIVSQKQIADR 178
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 41
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 16/192 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 49
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ S+ + +WL+E++
Sbjct: 50 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDR 109
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ ++F ++
Sbjct: 110 YASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAE 169
Query: 235 ALQRNGMERLWR 246
+R G+E L++
Sbjct: 170 IKKRMGLEVLFQ 181
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
+ +P + +YDYL K LL+GDS VGK +L RF D +ES + S G
Sbjct: 18 FQGRPXSSXNPEYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG 67
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ +K TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+
Sbjct: 68 -----VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122
Query: 165 GIDRWLKEVEEHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
+ +WL+E++ +A V K+LVGN+ L + V A+ +A + F E S N
Sbjct: 123 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
Query: 224 IRESFTELSRRALQRNG 240
+ +SF + +R G
Sbjct: 183 VEQSFXTXAAEIKKRXG 199
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 12 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 56
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 57 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ +SF ++
Sbjct: 117 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176
Query: 235 ALQRNG 240
+R G
Sbjct: 177 IKKRMG 182
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 16/184 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D ++S + S G + +K
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTDS-YISTIG-----VDFKIR 49
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI L+ K VKLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SFD + +W++E++
Sbjct: 50 TISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDR 109
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L R VT+ E A + + F E S +N+ ++F ++
Sbjct: 110 YAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGE 169
Query: 235 ALQR 238
+R
Sbjct: 170 IKKR 173
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 12 QYDYLLKFLLVGDSDVGKQEIL 33
+YDYL K LL+GDS VGK +L
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLL 26
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 69
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 70 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 129
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ +F
Sbjct: 130 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 65
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 65
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 66 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 125
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ +SF ++
Sbjct: 126 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 185
Query: 235 ALQRNG 240
+R G
Sbjct: 186 IKKRMG 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 20/182 (10%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL K +L+GDS VGK +LS RF R + S+S + + T +
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATRS 61
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +H
Sbjct: 62 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 121
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TEL 231
A + +LVGN+ L R V T EA +A KN ++F E S L N+ +F TE+
Sbjct: 122 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
Query: 232 SR 233
R
Sbjct: 182 YR 183
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 56
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 16/184 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 12 EYDYLFKLLLIGDSGVGKNCLL---------LRFADDTYTES-YISTIG-----VDFKIR 56
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 57 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ +SF ++
Sbjct: 117 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 176
Query: 235 ALQR 238
+R
Sbjct: 177 IKKR 180
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 16/184 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 46
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 47 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 106
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ +SF ++
Sbjct: 107 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 166
Query: 235 ALQR 238
+R
Sbjct: 167 IKKR 170
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 20/183 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+G R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 49 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 108
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ +F TE
Sbjct: 109 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 168
Query: 231 LSR 233
+ R
Sbjct: 169 IYR 171
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 44
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 16/186 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 49
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ S+ + +WL+E++
Sbjct: 50 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDR 109
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ ++F ++
Sbjct: 110 YASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAE 169
Query: 235 ALQRNG 240
+R G
Sbjct: 170 IKKRMG 175
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 16/174 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 69
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+G R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 70 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 129
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ +F
Sbjct: 130 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 65
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 16/174 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 45
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+G R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 46 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 105
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
HA + LVGN+ L R V T EA +A KN ++F E S L N+ +F
Sbjct: 106 HADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 16/174 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+G R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
HA + LVGN+ L R V T EA +A KN ++F E S L N+ +F
Sbjct: 112 HADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 107/186 (57%), Gaps = 16/186 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 49 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 108
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVG + L + V A+ +A + F E S N+ +SF ++
Sbjct: 109 YASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 168
Query: 235 ALQRNG 240
+R G
Sbjct: 169 IKKRMG 174
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 106/184 (57%), Gaps = 16/184 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YD L K LL+GDS VGK +L RF D +ES + S G + +K
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIR 46
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++
Sbjct: 47 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 106
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L + V A+ +A + F E S N+ +SF ++
Sbjct: 107 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE 166
Query: 235 ALQR 238
+R
Sbjct: 167 IKKR 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 16/184 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
YD L K +L+GDS VGK +LS RF + + S+S + + T
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLS------RFTKNEFNMDSKSTIG---------VEFATR 53
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ ++GKR+K Q+WDT+GQ R+ I +Y RGA G L+VYDI+ S++ + WL E+ E
Sbjct: 54 TLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V L+GN+ LA R V T E++ +A +NQ+ F E S L N+ ++F EL
Sbjct: 114 NADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173
Query: 235 ALQR 238
Q+
Sbjct: 174 IYQK 177
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
YD L K +L+GDS VGK +LS + + M++K + +
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLS--RFTKNEFNMDSKSTIGVE 49
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 101/177 (57%), Gaps = 17/177 (9%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL K +L+GDS VGK +LS RF R + S+S + + T +
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLS------RFTRDEFNLESKSTIG---------VEFATKS 48
Query: 117 ILL-DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
I L + K +K Q+WDT+GQ R+ I +Y RGA G LLVYDIT K SF+ I++WLKE+ +
Sbjct: 49 IQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD 108
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+A + +LVGN+ L R + +A YA K ++AF E S L N+ +F +L
Sbjct: 109 NADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
YDYL K +L+GDS VGK +LS RF + S+S + + T
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLS------RFTTDEFNIESKSTIG---------VEFATR 50
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI ++ K++K Q+WDT+G R+ I +Y RGA G L+VYDI+ S++ + WL E+ E
Sbjct: 51 TIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE 110
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+A V L+GN+ LA R V T EA+ +A++NQM F E S L N+ ++F EL
Sbjct: 111 NADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
YDYL K +L+GDS VGK +LS + + + +E+K + +
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTD--EFNIESKSTIGVE 46
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 17/180 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD ++K LL+GDS VGK +L ++E +F F + G + +K
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLV-RFVEDKF---------NPSFITTIG-----IDFKI 59
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GK+VKLQLWDT+GQ RF TI +Y RGA GI+LVYD+T++ +F I +W K V
Sbjct: 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN 119
Query: 175 EHAPGVPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA + +LVGN+ + R VT + E A + + F E S D N+ E F L++
Sbjct: 120 EHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YD ++K LL+GDS VGK +L
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLL 37
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 18/188 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ YD+L K L++GDS VGK +L RF D + + + G + +K
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLL------RFA----DNTFSGSYITTIG-----VDFKI 48
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++G++VKLQ+WDT+GQ RF TI +Y RG G+++VYD+T+ SF + RWL E+
Sbjct: 49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN 108
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF---TEL 231
++ V ++LVGN+ + V T +A +A + + FE S + N+ E F TEL
Sbjct: 109 QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168
Query: 232 SRRALQRN 239
RA + N
Sbjct: 169 VLRAKKDN 176
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
+ YD+L K L++GDS VGK +L
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLL 26
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 16/178 (8%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K LL+GDS VGK +L RF D +ES + S G + +K TI LDG
Sbjct: 1 KLLLIGDSGVGKSCLL---------LRFADDTYTES-YISTIG-----VDFKIRTIELDG 45
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-GV 180
K +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++ +A V
Sbjct: 46 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 105
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238
K+LVGN+ L + V A+ +A + F E S N+ +SF ++ +R
Sbjct: 106 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 163
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD+L KFL++G++ GK +L ++E +F +S G + + +
Sbjct: 7 YDFLFKFLVIGNAGTGKSCLLH-QFIEKKFK-------DDSNHTIG-------VEFGSKI 51
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + WL +
Sbjct: 52 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 111
Query: 177 AP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
A + +L GN+ L +R VT EA +A +N++ F E S L N+ E+F + +R+
Sbjct: 112 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
Query: 236 LQR 238
L +
Sbjct: 172 LNK 174
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
M T P Y Y+ K++++GD VGK +L + E +F ++ P G
Sbjct: 20 MATAPY-----NYSYIFKYIIIGDMGVGKSCLLH-QFTEKKF-------MADCPHTIG-- 64
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ + T I + G+++KLQ+WDT+GQGRF + RSY RGA G L+VYDIT + +++
Sbjct: 65 -----VEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYN 119
Query: 165 GIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
+ WL + P +L+GN+ L R VT EA+ +A +N + F E S N
Sbjct: 120 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179
Query: 224 IRESFTELSRRALQ 237
+ ++F E +++ Q
Sbjct: 180 VEDAFLEAAKKIYQ 193
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 105/183 (57%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD+L KFL++G++ GK +L ++E +F D S+ + + + +
Sbjct: 8 YDFLFKFLVIGNAGTGKSCLLHQ-FIEKKFK----DDSNHTI----------GVEFGSKI 52
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + WL +
Sbjct: 53 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 112
Query: 177 AP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
A + +L GN+ L +R VT EA +A +N++ F E S L ++ E+F + +R+
Sbjct: 113 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
Query: 236 LQR 238
L +
Sbjct: 173 LNK 175
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 101/177 (57%), Gaps = 17/177 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D ++K LL+GDS VGK +L ++E +F F + G + +K T+
Sbjct: 1 DSIMKILLIGDSGVGKSCLLV-RFVEDKF---------NPSFITTIG-----IDFKIKTV 45
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++GK+VKLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ +F I +W K V EHA
Sbjct: 46 DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 105
Query: 178 PGVPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ +LVGN+ + R VT + E A + + F E S D N+ E F L++
Sbjct: 106 NDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 19/186 (10%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD K +LVGDS VGK +L RF DG+ F +G+ + ++
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLV------RFK----DGA----FLAGTFISTVGIDFRNKV 52
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ +DG +VKLQ+WDT+GQ RF ++ +Y R A +LL+YD+TNK SFD I WL E+ E+
Sbjct: 53 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY 112
Query: 177 AP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFT----EL 231
A V +L+GN++ A R V + E A + + F E S N+ +FT EL
Sbjct: 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
Query: 232 SRRALQ 237
RR+++
Sbjct: 173 KRRSMK 178
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 100/175 (57%), Gaps = 17/175 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
++K LL+GDS VGK +L ++E +F F + G + +K T+ +
Sbjct: 7 IMKILLIGDSGVGKSCLLV-RFVEDKF---------NPSFITTIG-----IDFKIKTVDI 51
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPG 179
+GK+VKLQLWDT+GQ RF TI +Y RGA GI+LVYD+T++ +F I +W K V EHA
Sbjct: 52 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 111
Query: 180 VPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ +LVGN+ + R VT + E A + + F E S D N+ E F L++
Sbjct: 112 EAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 16/182 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
Y Y+ K++++GD VGK +L + E +F ++ P G + + T
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLH-QFTEKKF-------MADCPHTIG-------VEFGTRI 56
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + G+++KLQ+WDT+GQ RF + RSY RGA G L+VYDIT + +++ + WL +
Sbjct: 57 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL 116
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
P +L+GN+ L R VT EA+ +A +N + F E S N+ ++F E +++
Sbjct: 117 TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
Query: 236 LQ 237
Q
Sbjct: 177 YQ 178
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D+L KFL++G + GK +L ++E++F + +S G + + + +
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLH-QFIENKFKQ-------DSNHTIG-------VEFGSRVV 67
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
+ GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + WL + A
Sbjct: 68 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA 127
Query: 178 -PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRAL 236
P + +L GN+ L R VT EA +A +N++ F E S L N+ E+F + +R L
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Query: 237 QR 238
+
Sbjct: 188 NK 189
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 104/183 (56%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD+L KFL++G++ GK +L ++E +F D S+ + + + +
Sbjct: 5 YDFLFKFLVIGNAGTGKSCLLHQ-FIEKKFK----DDSNHTI----------GVEFGSKI 49
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + GK VKLQ+WDT+G RF ++ RSY RGA G LLVYDIT++ +++ + WL +
Sbjct: 50 INVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 109
Query: 177 AP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
A + +L GN+ L +R VT EA +A +N++ F E S L ++ E+F + +R+
Sbjct: 110 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
Query: 236 LQR 238
L +
Sbjct: 170 LNK 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D + K LL+GDS VGK +L ++E +F F + G + +K T+
Sbjct: 1 DSIXKILLIGDSGVGKSCLLV-RFVEDKF---------NPSFITTIG-----IDFKIKTV 45
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++GK+VKLQLWDT+GQ RF TI +Y RGA GI+LVYD+T++ +F I +W K V EHA
Sbjct: 46 DINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHA 105
Query: 178 PGVPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ +LVGN+ R VT + E A + + F E S D N+ E F L++
Sbjct: 106 NDEAQLLLVGNKSDXE-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D + K LL+GDS VGK +L ++E +F F + G + +K T+
Sbjct: 1 DSIXKILLIGDSGVGKSCLLV-RFVEDKF---------NPSFITTIG-----IDFKIKTV 45
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++GK+VKLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ +F I +W K V EHA
Sbjct: 46 DINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHA 105
Query: 178 PGVPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ +LVGN+ R VT + E A + + F E S D N+ E F L++
Sbjct: 106 NDEAQLLLVGNKSDXE-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ Y+++ K +L+G+S VGK +LS RF R S + + + T
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLS------RFTRNEFSHDSRTTIG---------VEFST 49
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T++L VK Q+WDT+G R+ I +Y RGA G LLV+D+T ++ ++RWLKE+
Sbjct: 50 RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 109
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
+HA + +LVGN+ L+ R V T EA M+A N + F E S L N+ +F
Sbjct: 110 DHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+ Y+++ K +L+G+S VGK +LS +
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRF 30
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ Y+++ K +L+G+S VGK +LS RF R S + + + T
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLS------RFTRNEFSHDSRTTIG---------VEFST 64
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T++L VK Q+WDT+G R+ I +Y RGA G LLV+D+T ++ ++RWLKE+
Sbjct: 65 RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 124
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
+HA + +LVGN+ L+ R V T EA M+A N + F E S L N+ +F
Sbjct: 125 DHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+ Y+++ K +L+G+S VGK +LS +
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRF 45
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
Q +DY+ K L++G+S VGK L + D + F S G + +K
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFR----------YADDTFTPAFVSTVG-----IDFK 61
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+ + W ++
Sbjct: 62 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+ ++ +LVGN+ + R V T + ++ A + FFE S + ++R++F L
Sbjct: 122 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 QKQYDYLLKFLLVGDSDVGKQEILSGY 36
Q +DY+ K L++G+S VGK L Y
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFRY 43
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 16/186 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ + YD+L K +L+G++ VGK L + + FP P + D M+
Sbjct: 18 GSMEDYDFLFKIVLIGNAGVGKT-CLVRRFTQGLFP----------PGQGATIGVDFMIK 66
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
T+ ++G++VKLQ+WDT+GQ RF +I +SY R A ++L YDIT + SF + WL+
Sbjct: 67 ----TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLR 122
Query: 172 EVEEHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
E+E++A V VLVGN++ LA R V+ + AE ++ M + E S N+ + F +
Sbjct: 123 EIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182
Query: 231 LSRRAL 236
L+ R +
Sbjct: 183 LACRLI 188
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 17/183 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D+ L+ +++G VGK ++ RF ++ FC K + +K T+
Sbjct: 24 DFKLQVIIIGSRGVGKTSLME---------RF-----TDDTFCEAC-KSTVGVDFKIKTV 68
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
L GK+++LQ+WDT+GQ RF +I +Y R A+GI+LVYDIT K +FD + +W+K ++++A
Sbjct: 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA 128
Query: 178 PGVPK-VLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSRRA 235
+ +LVGN+L +R +T ++ E +A + M F E S +FN+ E F +L
Sbjct: 129 SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 236 LQR 238
L++
Sbjct: 189 LKK 191
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
Y YL K++++GD+ VGK S L L+ RF G + +
Sbjct: 7 YAYLFKYIIIGDTGVGK----SCLLLQFTDKRF----QPVHDLTIG-------VEFGARM 51
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I +DGK++KLQ+WDT+GQ F +I RSY RGA G LLVYDIT + +F+ + WL++ +H
Sbjct: 52 ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH 111
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
+ + +L+GN+ L R V E E +A ++ + F E S N+ E+F ++
Sbjct: 112 SNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
Query: 236 LQR 238
++
Sbjct: 172 YEK 174
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+DY+ K L++G+S VGK L + D S F S G + +K
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFR----------YADDSFTPAFVSTVG-----IDFKVK 45
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI + KR+KLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+ + W +++
Sbjct: 46 TIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 105
Query: 176 HAPGVPKV-LVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ +V LVGN+ + R V++ A FFE S + N++++F L
Sbjct: 106 YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGY 36
+DY+ K L++G+S VGK L Y
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRY 25
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S+VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESEVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESKVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 8 FKLVLLGESAVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 52
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 53 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 112
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESAVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESRVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 25/192 (13%)
Query: 55 KQYDYLLKFLLVGDSDVGK----QEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+QYD+L K +LVGD+ VGK Q +G + E + +D
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVD------------------ 65
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T+ + GKRVKLQ+WDT+GQ RF TI +SY R A G +L YDIT + SF + W+
Sbjct: 66 -FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWI 124
Query: 171 KEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESF 228
++V ++A + ++L+GN+ L+ R V+ EA+ A + + E S N+ E+F
Sbjct: 125 EDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
Query: 229 TELSRRALQRNG 240
++ + R+G
Sbjct: 185 LRVATELIMRHG 196
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYK 37
+QYD+L K +LVGD+ VGK ++ +K
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFK 50
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESPVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 8 FKLVLLGESAVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 52
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 53 DTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 112
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKK 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 6 FKLVLLGESAVGK----SSLVL--RFVKGQFHEYQESTIQA---------AFLTQTVCLD 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN +F W+KE++ A P
Sbjct: 51 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 110
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 7 FKLVLLGESLVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 4 FKLVLLGESAVGK----SSLVL--RFVKGQFHEYQESTIGA---------AFLTQTVCLD 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN +F W+KE++ A P
Sbjct: 49 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 108
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 109 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 163
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 20/178 (11%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTT 116
YL K++++GD+ VGK S L L+ RF P +D + +
Sbjct: 20 YLFKYIIIGDTGVGK----SCLLLQFTDKRF-------QPV------HDLTIGVEFGARM 62
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ +DGK++KLQ+WDT+GQ F +I RSY RGA G LLVYDIT + +F+ + WL++ +H
Sbjct: 63 VNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH 122
Query: 177 -APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + +L+GN+ L R V E E +A ++ + F E S N+ E+F ++
Sbjct: 123 SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK L++G+S VGK +L RF D + + + G + +K TI +D
Sbjct: 16 LKILIIGESGVGKSSLLL------RFT----DDTFDPELAATIG-----VDFKVKTISVD 60
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-- 178
G + KL +WDT+GQ RF T+ SY RGAQG++LVYD+T + +F +D WL E+E +
Sbjct: 61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP-LCDFNIRESFTELSRRALQ 237
+ LVGN++ NR V E +A K+ F E S CD ++ +F EL + +Q
Sbjct: 121 DIVNXLVGNKIDKE-NREVDRNEGLKFARKHSXLFIEASAKTCD-GVQCAFEELVEKIIQ 178
Query: 238 RNGMERLWRSNKVGRKP 254
G LW S P
Sbjct: 179 TPG---LWESENQNSGP 192
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 6 FKLVLLGESAVGK----SSLVL--RFVKGQFHEFQESTIGA---------AFLTQTVCLD 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+G R+ ++ Y RGAQ ++VYDITN+ SF W+KE++ A P
Sbjct: 51 DTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 110
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 111 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 165
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
DY+ K LL+G+S VGK L + D S F S G + +K T+
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFR----------YADDSFTPAFVSTVG-----IDFKVKTV 64
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
KR+KLQ+WDT+GQ R+ TI +Y RGA G LL+YDI N+ SF + W +++ ++
Sbjct: 65 YRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
Query: 178 -PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+LVGN+ L R V + A FFE S + N+++ F L
Sbjct: 125 WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T ++ LD
Sbjct: 9 FKLVLLGESAVGK----SSLVL--RFVKGQFHEYQESTIGA---------AFLTQSVCLD 53
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ +F W+KE++ A P
Sbjct: 54 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 113
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V EA+ YA N + F E S N+ + F ++++
Sbjct: 114 IVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK 168
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 99.8 bits (247), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/130 (45%), Positives = 82/130 (63%), Gaps = 16/130 (12%)
Query: 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK 122
LL+GDS VGK +L RF D +ES + S G + +K TI LDGK
Sbjct: 1 LLLIGDSGVGKSCLLL---------RFADDTYTES-YISTIG-----VDFKIRTIELDGK 45
Query: 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-GVP 181
+KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+E++ +A V
Sbjct: 46 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 105
Query: 182 KVLVGNRLHL 191
K+LVGN+ L
Sbjct: 106 KLLVGNKCDL 115
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +L+G+S VGK S L L RF + ES + A+ T T+ LD
Sbjct: 6 FKLVLLGESAVGK----SSLVL--RFVKGQFHEYQESTIGA---------AFLTQTVCLD 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PG 179
VK ++WDT+G R+ ++ Y RGAQ ++VYDITN +F W+KE++ A P
Sbjct: 51 DTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 110
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L GN+ LA R V +EA+ YA N + F E S N+ E F ++++
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
+DY K L++G+S VGK L + D S F S G + +K T
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFR----------YADDSFTPAFVSTVG-----IDFKVKT 49
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + KR+KLQ+WDT+G R+ TI +Y RGA G +L YDITN+ SF+ + W +++ +
Sbjct: 50 IYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTY 109
Query: 177 APGVPKV-LVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+ +V LVGN+ R V++ A FFE S + N++++F L
Sbjct: 110 SWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 16/174 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K +L+GD GK ++ +++ +F F ES + A+ + T+ ++
Sbjct: 14 KLVLLGDVGAGKSSLVL-RFVKDQFVEF-----QESTIGA---------AFFSQTLAVND 58
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGV 180
VK ++WDT+GQ R+ ++ Y RGA ++V+D+TN+ SF+ +W++E++ P +
Sbjct: 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM 118
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
L GN+ L R VT +A+ YA +N + F E S N++E F E++RR
Sbjct: 119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 18/161 (11%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+ K +++GDS+VGK L+ + RFP +E+ + ++ + +
Sbjct: 20 IFKIIVIGDSNVGKT-CLTYRFCAGRFP-----DRTEATIG---------VDFRERAVDI 64
Query: 120 DGKRVKLQLWDTSGQGRF-CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-- 176
DG+R+K+QLWDT+GQ RF ++++ Y R ++ VYD+TN SF + W++E ++H
Sbjct: 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 124
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
A +P++LVGN+ L V T A+ +A + M FE S
Sbjct: 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS 165
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK--YDDML 110
+ YDYL+KFL +GDS VGK +L + DG S F + G + +
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQ----------YTDGKFNSKFITTVGIDFREKRV 53
Query: 111 AYKTTT---ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
Y+ + G+R+ LQLWDT+G RF ++ ++ R A G LL++D+TN+ SF +
Sbjct: 54 VYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR 113
Query: 168 RWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
W+ +++ HA P + VL GN+ L R V EA A K + +FE S N
Sbjct: 114 NWISQLQMHAYSENPDI--VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171
Query: 224 IRESFTELSRRALQRNGMER 243
I + L ++R MER
Sbjct: 172 ISHAIEMLLDLIMKR--MER 189
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 9 TQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ YDYL+KFL +GDS VGK +L Y
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQY 31
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+ K +++GDS+VGK L+ + RFP +E+ + ++ + +
Sbjct: 29 IFKIIVIGDSNVGKT-CLTYRFCAGRFP-----DRTEATI---------GVDFRERAVDI 73
Query: 120 DGKRVKLQLWDTSGQGRF-CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-- 176
DG+R+K+QLWDT+GQ RF ++++ Y R ++ VYD TN SF + W++E ++H
Sbjct: 74 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL 133
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
A +P++LVGN+ L V T A+ +A + FE S
Sbjct: 134 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETS 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 26/194 (13%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
LLK +++GDS VGK +++ Y+ +F S +Y + + T +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQ-YVNKKF----------------SNQYKATIGADFLTKEV 50
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++D + V +Q+WDT+GQ RF ++ ++ RGA +LV+D+T +F +D W E A
Sbjct: 51 MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
Query: 178 -----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFNIRESFTEL 231
P V++GN++ L NR V T+ A+ + KN + +FE S N+ ++F +
Sbjct: 111 SPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
Query: 232 SRRALQRNGMERLW 245
+R AL++ L+
Sbjct: 170 ARNALKQETEVELY 183
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 26/187 (13%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
LLK +++GDS VGK +++ Y+ +F S +Y + + T +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQ-YVNKKF----------------SNQYKATIGADFLTKEV 50
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++D + V +Q+WDT+GQ RF ++ ++ RGA +LV+D+T +F +D W E A
Sbjct: 51 MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
Query: 178 -----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFNIRESFTEL 231
P V++GN++ L NR V T+ A+ + KN + +FE S N+ ++F +
Sbjct: 111 SPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
Query: 232 SRRALQR 238
+R AL++
Sbjct: 170 ARNALKQ 176
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 3 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ V+LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 48 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSD 107
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
V +LVGN+ LA R +T E E A + + F E S +N+++ F ++ L+
Sbjct: 108 VIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK L+GD+ VGK I+ +S P +P S + T T+
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNI-------NPTIGAS--------FMTKTVQYQ 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+ K +WDT+GQ RF + Y RG+ ++VYDIT + +F + W++E+ +H P
Sbjct: 51 NELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-- 108
Query: 181 PKVLV---GNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P ++V GN+ L R V R+A+ YA F E S NI E F E+SRR
Sbjct: 109 PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 165
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 26/194 (13%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
LLK +++GDS VGK +++ Y+ +F S +Y + + T +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQ-YVNKKF----------------SNQYKATIGADFLTKEV 50
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++D + V +Q+WDT+GQ RF ++ ++ RGA +LV+D+T +F +D W E A
Sbjct: 51 MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
Query: 178 -----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFNIRESFTEL 231
P V++GN++ NR V T+ A+ + KN + +FE S N+ ++F +
Sbjct: 111 SPRDPENFPFVVLGNKIDFE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
Query: 232 SRRALQRNGMERLW 245
+R AL++ L+
Sbjct: 170 ARNALKQETEVELY 183
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 15 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 59
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ V+LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
V +LVGN+ L+ R V+T E E A + + F E S +N+++ F
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 7 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ ++LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 52 DRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
V +LVGN+ LA R V+ E E A + + F E S +N+++ F ++
Sbjct: 112 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 2 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 46
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ V+LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 47 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD 106
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
V +LVGN+ LA R V+ E E A + + F E S +N+++ F
Sbjct: 107 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 26/194 (13%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
LLK +++GDS VGK +++ Y+ +F S +Y + + T +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQ-YVNKKF----------------SNQYKATIGADFLTKEV 50
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++D + V +Q+WDT+G RF ++ ++ RGA +LV+D+T +F +D W E A
Sbjct: 51 MVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
Query: 178 -----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFNIRESFTEL 231
P V++GN++ L NR V T+ A+ + KN + +FE S N+ ++F +
Sbjct: 111 SPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
Query: 232 SRRALQRNGMERLW 245
+R AL++ L+
Sbjct: 170 ARNALKQETEVELY 183
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRF-PRFWLDGSSESPFCSGSGKYDDMLA 111
T YDYL+K L +GDS VGK L Y +++F P+F + F YD A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLY-RYTDNKFNPKFIT--TVGIDFREKRVVYDTQGA 60
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ +V LQLWDT+G RF ++ ++ R A G LL++D+T++ SF + W+
Sbjct: 61 DGASGKAF---KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 117
Query: 172 EVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227
+++ +A P + VL+GN+ L R V R+A A K + +FE S N+ +S
Sbjct: 118 QLQANAYCENPDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
Query: 228 FTELSRRALQRNGMERLWRSNKV 250
L ++R ME+ +V
Sbjct: 176 VETLLDLIMKR--MEKCVEKTQV 196
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK L+GD+ VGK I+ +S P +P S + T T+
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNI-------NPTIGAS--------FMTKTVQYQ 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+ K +WDT+G RF + Y RG+ ++VYDIT + +F + W++E+ +H P
Sbjct: 52 NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-- 109
Query: 181 PKVLV---GNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P ++V GN+ L R V R+A+ YA F E S NI E F E+SRR
Sbjct: 110 PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 166
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRF-PRFWLDGSSESPFCSGSGKYDDMLA 111
T YDYL+K L +GDS VGK L Y +++F P+F + F YD A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLY-RYTDNKFNPKFIT--TVGIDFREKRVVYDTQGA 60
Query: 112 YKTTTILLDGK--RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
+ GK +V LQLWDT+G RF ++ ++ R A G LL++D+T++ SF + W
Sbjct: 61 DGAS-----GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 115
Query: 170 LKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
+ +++ +A P + VL+GN+ L R V R+A A K + +FE S N+
Sbjct: 116 MSQLQANAYCENPDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
Query: 226 ESFTELSRRALQRNGMERLWRSNKV 250
+S L ++R ME+ +V
Sbjct: 174 KSVETLLDLIMKR--MEKCVEKTQV 196
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K + +G+ VGK I++ RF D + +S + + + T+ LD
Sbjct: 3 KLVFLGEQAVGKTSIIT------RFXYDTFDNNYQSTIG---------IDFLSKTLYLDE 47
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV-EEHAPGV 180
V+LQLWDT+GQ RF ++I SY R + ++VYDITN+ SF+ +W++++ E V
Sbjct: 48 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDV 107
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
LVGN+ L R VT E A + F E S NI+ F + + +
Sbjct: 108 IIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASK 161
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 31/186 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT---- 116
+K ++VG+ VGK ++ +C G D YK T
Sbjct: 6 IKMVVVGNGAVGKSSMIQ-------------------RYCKGIFTKD----YKKTIGVDF 42
Query: 117 ----ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
I ++ + V+L LWDT+GQ F I ++Y RGAQ +LV+ T++ SF+ I W ++
Sbjct: 43 LERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK 102
Query: 173 VEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
V +P LV N++ L + + EAE A + ++ F+ S D N+ E F L+
Sbjct: 103 VVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
Query: 233 RRALQR 238
+ LQ+
Sbjct: 163 EKHLQK 168
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 14 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 58
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ ++LQLWDT+G RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD 118
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239
V +LVGN+ LA R V+ E E A + + F E S +N+++ F R A
Sbjct: 119 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF---RRVAAALP 175
Query: 240 GME 242
GME
Sbjct: 176 GME 178
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 35/198 (17%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRF-PRF----WLDG-------SSESPFCSGSG 104
YDYL+K L +GDS VGK L Y +++F P+F +D +++ P S SG
Sbjct: 22 YDYLIKLLALGDSGVGKTTFLY-RYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS-SG 79
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
K A+K V LQLWDT+GQ RF ++ ++ R A G LL++D+T++ SF
Sbjct: 80 K-----AFK----------VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 124
Query: 165 GIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220
+ W+ +++ +A P + VL+GN+ L R V R+A A K + +FE S
Sbjct: 125 NVRNWMSQLQANAYCENPDI--VLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182
Query: 221 DFNIRESFTELSRRALQR 238
N+ ++ L ++R
Sbjct: 183 GQNVEKAVETLLDLIMKR 200
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 7 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ V+LQLWDT+G RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 52 DRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD 111
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239
V +LVGN+ LA R V+ E E A + + F E S +N+++ F R A
Sbjct: 112 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF---RRVAAALP 168
Query: 240 GME 242
GME
Sbjct: 169 GME 171
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK L+GD+ VGK I+ RF + D + SP S + T T+
Sbjct: 24 LKVCLLGDTGVGKSSIVC------RFVQDHFD-HNISPTIGAS--------FMTKTVPCG 68
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-G 179
+ K +WDT+GQ RF ++ Y RG+ ++VYDIT + SF + +W+KE++EH P
Sbjct: 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN 128
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + GN+ L+ R V ++A+ YA E S NI E F +SR+
Sbjct: 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K + +G+ VGK +++ RF D S ++ + + G + + + T+ L+
Sbjct: 17 FKLVFLGEQSVGKTSLIT---------RFMYD-SFDNTYQATIG-----IDFLSKTMYLE 61
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-EHAPG 179
+ V+LQLWDT+G RF ++I SY R + ++VYDITN SF +W+ +V E
Sbjct: 62 DRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD 121
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239
V +LVGN+ LA R V+ E E A + + F E S +N+++ F R A
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF---RRVAAALP 178
Query: 240 GME 242
GME
Sbjct: 179 GME 181
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGL----YLESRFPRFWLDGSSESPFCSGSGKYD 107
++QK Y K +L GD+ VGK L L + E+ +D
Sbjct: 24 SSQKAY----KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--------------- 64
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
++ T+++DG+R LQLWDT+GQ RF +I +SY R A G+LL+YD+T + SF I
Sbjct: 65 ----FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120
Query: 168 RWLKEVEEHA-PGVPKVLVGNRLHL------AFNRTVTTREAEMYAIKNQMAFFEVSPLC 220
W+ +E+ A VP +LVGN+ + + V E A+ F E S
Sbjct: 121 EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180
Query: 221 DFNIRESFTELSRRALQRN 239
NI E+ L+R +R
Sbjct: 181 GSNIVEAVLHLAREVKKRT 199
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRF-PRFWLDGSSESPFCSGSGKYDDMLA 111
T YDYL+K L +GDS VGK L Y +++F P+F + F YD A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLY-RYTDNKFNPKFIT--TVGIDFREKRVVYDTQGA 60
Query: 112 YKTTTILLDGK--RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
+ GK +V LQLWDT+G RF ++ ++ R A G LL +D+T++ SF + W
Sbjct: 61 DGAS-----GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNW 115
Query: 170 LKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
+++ +A P + VL+GN+ L R V R+A A K + +FE S N+
Sbjct: 116 XSQLQANAYCENPDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
Query: 226 ESFTEL 231
+S L
Sbjct: 174 KSVETL 179
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRF-PRFWLDGSSESPFCSGSGKYDDMLA 111
T YDYL+K L +GDS VGK L Y +++F P+F + F YD A
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLY-RYTDNKFNPKFIT--TVGIDFREKRVVYDTQGA 60
Query: 112 YKTTTILLDGK--RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
+ GK +V LQLWDT+G RF ++ ++ R A G LL +D+T++ SF + W
Sbjct: 61 DGAS-----GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNW 115
Query: 170 LKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
+++ +A P + VL+GN+ L R V R+A A K + +FE S N+
Sbjct: 116 XSQLQANAYCENPDI--VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
Query: 226 ESFTEL 231
+S L
Sbjct: 174 KSVETL 179
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 27/190 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
+LK +++GDS VGK ++ Y+ ++ S +Y + + T +
Sbjct: 8 ILKVIILGDSGVGKTSLMH-RYVNDKY----------------SQQYKATIGADFLTKEV 50
Query: 118 LLDGKRVK-LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+DG +V +Q+WDT+GQ RF ++ ++ RGA +LVYD+TN SF+ I W E H
Sbjct: 51 TVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVH 110
Query: 177 A-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN--QMAFFEVSPLCDFNIRESFT 229
A P V++GN++ ++ + + ++ K+ + F S N+ +F
Sbjct: 111 ANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170
Query: 230 ELSRRALQRN 239
E++R ALQ+N
Sbjct: 171 EIARSALQQN 180
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL 118
Y K +L+G+ VGK ++ Y E++F + S + T +
Sbjct: 5 YSFKVVLLGEGCVGKTSLVL-RYCENKFNDKHITTLGAS--------------FLTKKLN 49
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-A 177
+ GKRV L +WDT+GQ RF + Y R + G +LVYDIT++ SF + W+KE+ +
Sbjct: 50 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
+ +VGN++ L R V+ +EAE YA + S + I E F +L +R ++
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL 118
Y K +L+G+ VGK ++ Y E++F + S + T +
Sbjct: 19 YSFKVVLLGEGCVGKTSLVL-RYCENKFNDKHITTLQAS--------------FLTKKLN 63
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-A 177
+ GKRV L +WDT+GQ RF + Y R + G +LVYDIT++ SF + W+KE+ +
Sbjct: 64 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 123
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
+ +VGN++ L R V+ +EAE YA + S + I E F +L +R ++
Sbjct: 124 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL 118
Y K +L+G+ VGK ++ Y E++F + S + T +
Sbjct: 5 YSFKVVLLGEGCVGKTSLVL-RYCENKFNDKHITTLQAS--------------FLTKKLN 49
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-A 177
+ GKRV L +WDT+GQ RF + Y R + G +LVYDIT++ SF + W+KE+ +
Sbjct: 50 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
+ +VGN++ L R V+ +EAE YA + S + I E F +L +R ++
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
LLK +L+GD VGK +++ Y+ ++F S++ G + + + +
Sbjct: 7 LLKVILLGDGGVGKSSLMN-RYVTNKF-------DSQAFHTIG-------VEFLNRDLEV 51
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
DG+ V LQ+WDT+GQ RF ++ + RGA LL + + ++ SF+ + W KE +A
Sbjct: 52 DGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADV 111
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSR 233
P V++GN++ +R VTT EA+ + ++N + E S D N+ +F E R
Sbjct: 112 KDPEHFPFVVLGNKVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVR 170
Query: 234 RAL 236
+ L
Sbjct: 171 QVL 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 61 LKFLLVGDSDVGKQEIL----SGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
+K +L+G++ VGK I+ S + E++ P A+ T
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-------------------AFLTQR 44
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ ++ VK ++WDT+GQ RF ++ Y R AQ L+VYD+T SF W+KE+ E
Sbjct: 45 VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 104
Query: 177 AP-GVPKVLVGNR---LHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
A + LVGN+ L R V E E A + + FFE S N+ + F
Sbjct: 105 ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K +L+GD VGK +++ Y+ ++F ++ G + + + +
Sbjct: 7 LFKVILLGDGGVGKSSLMN-RYVTNKF---------DTQLFHTIG-----VEFLNKDLEV 51
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
DG V +Q+WDT+GQ RF ++ + RG+ LL + + + SF + W KE +A
Sbjct: 52 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 111
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSR 233
P V++GN++ ++ R V+T EA+ + N +FE S N+ +F E R
Sbjct: 112 KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170
Query: 234 RAL 236
R L
Sbjct: 171 RVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K +L+GD VGK +++ Y+ ++F ++ G + + + +
Sbjct: 9 LFKVILLGDGGVGKSSLMN-RYVTNKF---------DTQLFHTIG-----VEFLNKDLEV 53
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
DG V +Q+WDT+GQ RF ++ + RG+ LL + + + SF + W KE +A
Sbjct: 54 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 113
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSR 233
P V++GN++ ++ R V+T EA+ + N +FE S N+ +F E R
Sbjct: 114 KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 172
Query: 234 RAL 236
R L
Sbjct: 173 RVL 175
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K +L+GD VGK +++ Y+ ++F +S G + + + +
Sbjct: 11 LFKIILLGDGGVGKSSLMN-RYVTNKF---------DSQLFHTIG-----VEFLNKDLEV 55
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
DG V +Q+WDT+GQ RF ++ + RG+ LL + + + SF + W KE +A
Sbjct: 56 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 115
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSR 233
P V++GN+ + R V+T EA+ + N +FE S N+ +F E R
Sbjct: 116 KEPESFPFVILGNKTDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVR 174
Query: 234 RAL 236
R L
Sbjct: 175 RIL 177
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 106 YDDMLAYKTTTIL-LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
YD + T I +DG +L + DT+GQ F + Y R G LLV+ I ++ SF+
Sbjct: 38 YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFN 97
Query: 165 GIDRWLKEV--EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222
+ + ++ + P VLVGN+ L R V EA + + +A+FE S
Sbjct: 98 EVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157
Query: 223 NIRESFTELSR 233
N+ E+F +L R
Sbjct: 158 NVDEAFEQLVR 168
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+K + VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 6 FIKCVTVGDGAVGKTCMLIS-YTGNTFPTDYV-----------PTVFDNFSA----NVVV 49
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAP 178
DG V L LWDT+GQ + + RGA LL + + +K S++ I +WL E++ +AP
Sbjct: 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP 109
Query: 179 GVPKVLVGNRLHLAFNR----------TVTTREA-EMYAIKNQMAFFEVSPLCDFNIRES 227
G+P VLVG +L L ++ ++TT + E+ + + + E S N++
Sbjct: 110 GIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAV 169
Query: 228 FTELSRRALQ 237
F R AL+
Sbjct: 170 FDTAIRVALR 179
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T ++D + +L + DT+GQ F + Y R +G LLV+ +T++ SF+ I ++ +++
Sbjct: 43 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
Query: 174 --EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+ P +L+GN+ L R VT E + A + ++ + E S N+ ++F EL
Sbjct: 103 LRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162
Query: 232 SR 233
R
Sbjct: 163 VR 164
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
A Q + K +LVGD GK + F + L G SE + + G L
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGESEKKYVATLGVEVHPLV 56
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W +
Sbjct: 57 FHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHR 111
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ +P VL GN++ + +R V + + KN + ++++S ++N + F L
Sbjct: 112 DLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWL 169
Query: 232 SRRALQRNGME 242
+R+ + +E
Sbjct: 170 ARKLIGDPNLE 180
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+K + VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 8 FIKCVTVGDGAVGKTCLLIS-YTSNTFPTDYV-----------PTVFDNFSA----NVVV 51
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAP 178
+G V L LWDT+GQ + + RGA +L + + +K S++ + +W+ E++ +AP
Sbjct: 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111
Query: 179 GVPKVLVGNRLHLAFNR-----------TVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227
GVP VLVG +L L ++ T + E+ + A+ E S N++
Sbjct: 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
Query: 228 FTELSRRALQ 237
F R LQ
Sbjct: 172 FDAAIRVVLQ 181
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+K + VGD VGK +L Y ++FP ++ +D+ A + +
Sbjct: 9 FIKCVTVGDGAVGKTCMLI-CYTSNKFPTDYI-----------PTVFDNFSA----NVAV 52
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAP 178
DG+ V L LWDT+GQ + + RGA +L + + +K S++ + +W+ E+ AP
Sbjct: 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112
Query: 179 GVPKVLVGNRLHL---------AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFT 229
VP VLVG +L L N +T+ E+ A+ E S N++ F
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 230 ELSRRALQRNGMERLWRSNKVGRK 253
+ LQ + + R K R+
Sbjct: 173 TAIKVVLQPPRRKEVPRRRKNHRR 196
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+K + VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 6 FIKCVTVGDGAVGKTCMLIS-YTSNTFPTDYV-----------PTVFDNFSA----NVVV 49
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAP 178
DG V L LWDT+GQ + + RGA +L + + +K S++ + +W+ E+ +AP
Sbjct: 50 DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 109
Query: 179 GVPKVLVGNRLHLAFNR----------TVTTREA-EMYAIKNQMAFFEVSPLCDFNIRES 227
GVP +LVG +L L ++ +TT + E+ + + E S N++
Sbjct: 110 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAV 169
Query: 228 FTELSRRALQ 237
F + LQ
Sbjct: 170 FDAAIKVVLQ 179
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E KY L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEK-------KYVPTL 43
Query: 111 AYKTTTILLDGKR--VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR 168
+ ++ R +K +WDT+GQ +F + Y AQ ++++D+T++ ++ +
Sbjct: 44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN 103
Query: 169 WLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
W +++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
Query: 229 TELSRRALQRNGME 242
L+R+ + +E
Sbjct: 162 LWLARKLIGDPNLE 175
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGNR LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPLV 56
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ T +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W +
Sbjct: 57 FHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHR 111
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ +P VL GN++ + +R V + + KN + ++++S ++N + F L
Sbjct: 112 DLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWL 169
Query: 232 SRRALQRNGME 242
+R+ + +E
Sbjct: 170 ARKLIGDPNLE 180
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E KY L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEK-------KYVPTL 43
Query: 111 AYKTTTILLDGKR--VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR 168
+ ++ R +K +WDT+GQ +F + Y AQ ++++D+T++ ++ +
Sbjct: 44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN 103
Query: 169 WLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
W +++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF 161
Query: 229 TELSRRALQRNGME 242
L+R+ + +E
Sbjct: 162 LWLARKLIGDPNLE 175
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ +F + Y AQ ++ +D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK + F + L G E + + G L + T +
Sbjct: 4 FKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----N 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W +++ +
Sbjct: 49 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI 108
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNG 240
P VL GN++ + +R V + + KN + ++++S ++N + F L+R+ +
Sbjct: 109 PIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 166
Query: 241 ME 242
+E
Sbjct: 167 LE 168
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 235 ALQ 237
Q
Sbjct: 168 IRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 235 ALQ 237
Q
Sbjct: 168 IRQ 170
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 50 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 110 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 168
Query: 235 ALQ 237
Q
Sbjct: 169 IRQ 171
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW---LKEVEEHAPGV 180
V LQ+WD GQ ++ Y GAQG+LLVYDITN SF+ ++ W +K+V E +
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 181 PKV-LVGNRLHLAFNRTV 197
P V LVGN++ L RT+
Sbjct: 116 PLVALVGNKIDLEHMRTI 133
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 51 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 111 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 169
Query: 235 ALQ 237
Q
Sbjct: 170 IRQ 172
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+GQ ++ + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 FRQ 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 52
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+G +F + Y AQ ++++D+T++ ++ + W
Sbjct: 53 VFHTNR-----GPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 107
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 108 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 165
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 166 LARKLIGDPNLE 177
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + VP VLVGN+ L +RTV T++A+ A + F E S + ++F L R
Sbjct: 105 KDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+A Q + K +LVGD GK + F + L G E + + G L
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPL 50
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ T +K +WDT+G +F + Y AQ ++++D+T++ ++ + W
Sbjct: 51 VFHTNR-----GPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 105
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ +P VL GN++ + +R V + + KN + ++++S ++N + F
Sbjct: 106 RDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 163
Query: 231 LSRRALQRNGME 242
L+R+ + +E
Sbjct: 164 LARKLIGDPNLE 175
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF I+ + ++++
Sbjct: 62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ L RTV T++A A + F E S + ++F L R
Sbjct: 122 KDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180
Query: 235 ALQ 237
Q
Sbjct: 181 IRQ 183
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G+ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K +LVGD GK +L ++ + FP S +P + + +
Sbjct: 35 VKVVLVGDGGCGKTSLLM-VFADGAFPE------SYTP---------TVFERYMVNLQVK 78
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
GK V L +WDT+GQ + + + A +LL +D+T+ SFD I +RW EV
Sbjct: 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK 138
Query: 180 VPKVLVGNRLHLAFNRTVTT-------------REAEMYAIKNQMAFFEVSPLCDFNIRE 226
VP ++VG + L ++++ R EM +A+ E S N+
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198
Query: 227 SFTELSRRALQRNG 240
F E + AL G
Sbjct: 199 VFQEAAEVALSSRG 212
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + VP VLVGN+ L +RTV T++A+ A + F E S + ++F L R
Sbjct: 105 KDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + VP VLVGN+ L +RTV T++A+ A + F E S + ++F L R
Sbjct: 105 KDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + VP VLVGN+ L +RTV T++A+ A + F E S + ++F L R
Sbjct: 105 KDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+GQ + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+ Q + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+ Q + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 18 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 61
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
DG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++ +
Sbjct: 62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 121
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181
Query: 238 R 238
R
Sbjct: 182 R 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 6 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 49
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
DG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++ +
Sbjct: 50 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 109
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 110 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169
Query: 238 R 238
R
Sbjct: 170 R 170
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + FP ++ E+ I +DG
Sbjct: 27 KLVVVGDGACGKTCLLI-VFSKDEFPEVYVPTVFEN---------------YVADIEVDG 70
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + + + S + I ++W+ EV+ P V
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNV 130
Query: 181 PKVLVGNRLHLAFNRTVTTREAEM------------YAIKNQM-AFFEVSPLCDFNIRES 227
P +LV N+ L + V T A M A++ Q + E S +RE
Sbjct: 131 PIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190
Query: 228 FTELSRRALQR 238
F +R ALQ+
Sbjct: 191 FETATRAALQK 201
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 14 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 57
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
DG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++ +
Sbjct: 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 117
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177
Query: 238 R 238
R
Sbjct: 178 R 178
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 4 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 47
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
DG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++ +
Sbjct: 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
Query: 238 R 238
R
Sbjct: 168 R 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRS-YSRGAQGILLVYDITNKWSFDGI---DRWLKEVE 174
+D + V +++ DT+GQ TI R + R +G +LVYDIT++ SF+ + L E++
Sbjct: 71 IDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK 128
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC-DFNIRESFTELSR 233
+ V +LVGN+ L +R V+T E E A + AF+E S + NI E F EL R
Sbjct: 129 K-PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 187
Query: 234 RALQR 238
+R
Sbjct: 188 EVRRR 192
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK + F + L G E + + G L + T
Sbjct: 7 FKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR---- 52
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+K +WDT+G +F + Y AQ ++++D+T++ ++ + W +++ +
Sbjct: 53 -GPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI 111
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNG 240
P VL GN++ + +R V + + KN + ++++S ++N + F L+R+ +
Sbjct: 112 PIVLCGNKVDIK-DRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 169
Query: 241 ME 242
+E
Sbjct: 170 LE 171
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 49 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 235 ALQ 237
Q
Sbjct: 168 IRQ 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K L+GD VGK ++ + LDG E + + G + + T + G
Sbjct: 13 KICLIGDGGVGKTTYINRV----------LDGRFEKNYNATVG----AVNHPVTFLDDQG 58
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPG-V 180
+K +WDT+GQ + + Y GA G +L +D+T++ + + RW+KE +
Sbjct: 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA 118
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-MAFFEVSPLCDFNIRESFTELSR 233
P V+ N++ + NR +++ M +K + +FE+S N F L+R
Sbjct: 119 PIVVCANKIDIK-NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 62 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ + VP VLVGN+ L +RTV T++A+ A + F E S + ++F L R
Sbjct: 122 KDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 179
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 112
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 113 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 172
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 173 FEMATRAALQ 182
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 111 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 170
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 171 FEMATRAALQ 180
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE-- 174
+++DG+ L + DT+G + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 44 VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ + VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 235 ALQ 237
Q
Sbjct: 163 IRQ 165
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 8 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 51
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 52 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 111
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 112 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 171
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 172 FEMATRAALQ 181
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 11 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 54
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 55 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 114
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 115 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 174
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 175 FEMATRAALQ 184
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 112
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 113 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 172
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 173 FEMATRAALQ 182
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDVACGKTCLLI-VFSKDQFPAVYVPTVFEN---------------YVADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGNRLHLAFNRTVTTRE-----------AEMYAIKNQMAFF---EVSPLCDFNIRE 226
P +LVGN+ L N T RE AE + N++ F E S +RE
Sbjct: 111 PIILVGNKKDLR-NDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 227 SFTELSRRALQ 237
F +R ALQ
Sbjct: 170 VFEMATRAALQ 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEH 176
+D + L + DT+GQ F + Y R G L+VY +T+K SF+ +DR+ + + +
Sbjct: 56 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 115
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS----PLCDFNIRESFTELS 232
P +LV N++ L R VT + + A K + + E S PL N+ ++F +L
Sbjct: 116 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL---NVDKTFHDLV 172
Query: 233 R 233
R
Sbjct: 173 R 173
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEH 176
+D + L + DT+GQ F + Y R G L+VY +T+K SF+ +DR+ + + +
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS----PLCDFNIRESFTELS 232
P +LV N++ L R VT + + A K + + E S PL N+ ++F +L
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL---NVDKTFHDLV 177
Query: 233 RRALQR 238
R Q+
Sbjct: 178 RVIRQQ 183
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 10 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 53
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 54 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 113
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 114 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 174 FEMATRAALQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEH 176
+D + L + DT+GQ F + Y R G L+VY +T+K SF+ +DR+ + + +
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS----PLCDFNIRESFTELS 232
P +LV N++ L R VT + + A K + + E S PL N+ ++F +L
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL---NVDKTFHDLV 177
Query: 233 RRALQR 238
R Q+
Sbjct: 178 RVIRQQ 183
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 9 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 112
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 113 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 172
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 173 FEMATRAALQ 182
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEH 176
+D + L + DT+GQ F + Y R G L+VY +T+K SF+ +DR+ + + +
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS----PLCDFNIRESFTELS 232
P +LV N++ L R VT + + A K + + E S PL N+ ++F +L
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL---NVDKTFHDLV 177
Query: 233 R 233
R
Sbjct: 178 R 178
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK + F + L G E + + G L++ T +
Sbjct: 5 FKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYIATIGVEVHPLSFYT-----N 49
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+K +WDT+G +F + Y AQ ++++D+T++ ++ + W +++ +
Sbjct: 50 FGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI 109
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P VL GN++ + R V + + KN + ++++S ++N + F L+R+
Sbjct: 110 PIVLCGNKVDVK-ERKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARK 161
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK + F + L G E + + G L++ T +
Sbjct: 6 FKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYIATIGVEVHPLSFYT-----N 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+K +WDT+G +F + Y AQ ++++D+T++ ++ + W +++ +
Sbjct: 51 FGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI 110
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P VL GN++ + R V + + KN + ++++S ++N + F L+R+
Sbjct: 111 PIVLCGNKVDVK-ERKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARK 162
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 8 KLVIVGDVACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YVADIEVDG 51
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 52 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 111
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 112 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 171
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 172 FEMATRAALQ 181
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 27 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YIADIEVDG 70
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 130
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + R E + N+++ F E S +RE
Sbjct: 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190
Query: 228 FTELSRRALQ 237
F +R LQ
Sbjct: 191 FEMATRAGLQ 200
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L ++ + +FP ++ E+ I +DG
Sbjct: 27 KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFEN---------------YIADIEVDG 70
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNV 130
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + R E + N+++ F E S +RE
Sbjct: 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190
Query: 228 FTELSRRALQ 237
F +R LQ
Sbjct: 191 FEMATRAGLQ 200
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK + F + L G E + + G L++ T +
Sbjct: 13 FKLVLVGDGGTGK----------TTFVKRHLTGEFEKKYIATIGVEVHPLSFYT-----N 57
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+K +WDT+G +F + Y AQ ++++D+T++ ++ + W +++ +
Sbjct: 58 FGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI 117
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P VL GN++ + R V + + KN + ++++S ++N + F L+R+
Sbjct: 118 PIVLCGNKVDVK-ERKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARK 169
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 111 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 170
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 171 FEMATRAALQ 180
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 111 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 170
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 171 FEMATRAALQ 180
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 111 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 170
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 171 FEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 5 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 48
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 49 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 108
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 109 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 168
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 169 FEMATRAALQ 178
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK 182
+K +WDT+GQ R+ +I+ Y RGA ++V+DI+N + D W+ +++ + +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII- 150
Query: 183 VLVGNRLHLAFNR-TVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+LV N++ N+ V E + YA N + F + S NI+ F L+
Sbjct: 151 ILVANKIDK--NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 7 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YIADIEVDG 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + R E + N+++ F E S +RE
Sbjct: 111 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 170
Query: 228 FTELSRRALQ 237
F +R LQ
Sbjct: 171 FEMATRAGLQ 180
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 3 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 46
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE---VEEH 176
DG+ V++ + DT+G + I +Y R +G LLV+ IT SF + ++ V+
Sbjct: 47 DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE 106
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+P ++VGN+ L R V EA A + + + E S N+ + F +L R
Sbjct: 107 EDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 7 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 50
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE---VEEH 176
DG+ V++ + DT+G + I +Y R +G LLV+ IT SF + ++ V+
Sbjct: 51 DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE 110
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+P ++VGN+ L R V EA A + + + E S N+ + F +L R
Sbjct: 111 EDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--E 174
+ +D ++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 46 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 105
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSR 233
+ VP +LVGN+ L R V + + A + N AF E S N+ E F +L R
Sbjct: 106 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 165
Query: 234 R 234
+
Sbjct: 166 Q 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK S L L+ + F D P + S + ++L
Sbjct: 6 LHKVIMVGSGGVGK----SALTLQFMYDEFVEDYE---PTKADSYR---------KKVVL 49
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
DG+ V++ + DT+G + I +Y R +G L V+ IT SF + +++ +
Sbjct: 50 DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 109
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 110 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169
Query: 238 R 238
R
Sbjct: 170 R 170
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--E 174
+ +D ++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSR 233
+ VP +LVGN+ L R V + + A + N AF E S N+ E F +L R
Sbjct: 104 KDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 163
Query: 234 R 234
+
Sbjct: 164 Q 164
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIR-SYSRGAQGILLVYDITNKWSFDG---IDRWLKE 172
I D LQ+ DT+G +F + R S S+G +LV+ +T+K S + I + + +
Sbjct: 49 ISCDKSVCTLQITDTTGSHQFPAMQRLSISKG-HAFILVFSVTSKQSLEELGPIYKLIVQ 107
Query: 173 VEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
++ +P +LVGN+ R V TREA+ A + + AF E S ++N++E F EL
Sbjct: 108 IKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
Query: 233 RRALQRN 239
+RN
Sbjct: 167 TLETRRN 173
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIR-SYSRGAQGILLVYDITNKWSFDG---IDRWLKE 172
I D LQ+ DT+G +F + R S S+G +LVY IT++ S + I + E
Sbjct: 44 ISCDKSICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSITSRQSLEELKPIYEQICE 102
Query: 173 VEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ +P +LVGN+ + +R V + EAE A + AF E S + N++E F EL
Sbjct: 103 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 5 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 48
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+GQ + + IL+ + I + S + I ++W EV+ P V
Sbjct: 49 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 108
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 109 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 168
Query: 228 FTELSRRAL 236
F +R AL
Sbjct: 169 FEMATRAAL 177
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGI-LLVYDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 6 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 49
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGI-LLVYDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 50 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 108
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 109 NTPIILVGTKLDL 121
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGI-LLVYDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 11 IKCVVVGDGAVGKNCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 54
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 55 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 113
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 114 NTPIILVGTKLDL 126
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 32/192 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAE-------------MYAIKNQMAFFEVSPLCDFNIR 225
P +LVG +L L ++ + E M + + E S L ++
Sbjct: 107 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Query: 226 ESFTELSRRALQ 237
F E R L+
Sbjct: 167 TVFDEAIRAVLK 178
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 23 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 66
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 67 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 125
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 126 NTPIILVGTKLDL 138
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 8 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGI-LLVYDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 52 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 110
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 111 NTPIILVGTKLDL 123
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K +LVGD VGK ++ Y + +P ++ + +D+ A + +D
Sbjct: 21 VKCVLVGDGAVGKTSLVVS-YTTNGYPTEYIPTA-----------FDNFSA----VVSVD 64
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
G+ V+LQL DT+GQ F + LL + + + SF + ++W+ E+ H P
Sbjct: 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK 124
Query: 180 VPKVLVGNRLHL------------AFNRTVTTREAEMYAIKNQMA-FFEVSPLCDFNIRE 226
P +LVG + L + V A++ A + + A + E S L N++E
Sbjct: 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184
Query: 227 SF 228
F
Sbjct: 185 VF 186
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 31 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 74
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 75 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 134 NTPIILVGTKLDL 146
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ I +DG
Sbjct: 10 KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFEN---------------YVADIEVDG 53
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
K+V+L LWDT+G + + IL+ + I + S + I ++W EV+ P V
Sbjct: 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 113
Query: 181 PKVLVGN----------RLHLAFNRTVTTREAEMYAIKNQMAFF---EVSPLCDFNIRES 227
P +LVGN R LA + + E + N++ F E S +RE
Sbjct: 114 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173
Query: 228 FTELSRRALQ 237
F +R ALQ
Sbjct: 174 FEMATRAALQ 183
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHLAFNRTVTTR 200
P +LVG +L L ++ R
Sbjct: 107 HTPILLVGTKLDLRDDKDTIER 128
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 5 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 49 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 179 GVPKVLVGNRLHLAFNRTVTTR 200
P +LVG +L L ++ R
Sbjct: 108 HTPILLVGTKLDLRDDKDTIER 129
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 5 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 49 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 179 GVPKVLVGNRLHLAFNRTVTTR 200
P +LVG +L L ++ R
Sbjct: 108 HTPILLVGTKLDLRDDKDTIER 129
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGD GK +L + + +FP ++ E+ + +DG
Sbjct: 12 KLVIVGDGACGKTCLLI-VNSKGQFPEVYVPTVFEN---------------YVADVEVDG 55
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
+RV+L LWDT+GQ + + + +L+ + I S + + ++W+ EV GV
Sbjct: 56 RRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGV 115
Query: 181 PKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRES 227
P +LVG ++ L + + VT++E + A + ++E S + +RE
Sbjct: 116 PIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREV 175
Query: 228 FTELSRRAL 236
F +R +L
Sbjct: 176 FEAATRASL 184
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 35/141 (24%)
Query: 61 LKFLLVGDSDVGKQEIL--------SGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAY 112
+K ++VGD VGK +L SG Y+ + F +
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY----------------------- 50
Query: 113 KTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWL 170
+ +++DGK V L LWDT+GQ + +R S + L+ + + + SF+ + +W
Sbjct: 51 -SANVMVDGKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWY 108
Query: 171 KEVEEHAPGVPKVLVGNRLHL 191
EV H P P +LVG +L L
Sbjct: 109 PEVRHHCPNTPIILVGTKLDL 129
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
K V L LWDT+GQ + +R S + L+ + + + S++ + +W EV H P
Sbjct: 48 SKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 106
Query: 179 GVPKVLVGNRLHLAFNRTVTT--REAEMYAIK-----------NQMAFFEVSPLCDFNIR 225
P +LVG +L L ++ +E ++ I + + + E S L ++
Sbjct: 107 STPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 166
Query: 226 ESFTELSRRAL 236
F E R L
Sbjct: 167 TVFDEAIRAVL 177
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+G + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+G + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 48 GKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 107 NTPIILVGTKLDL 119
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--E 174
+ +D ++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSR 233
+ VP +LVGN+ L R V + + A + AF E S N+ E F +L R
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
Query: 234 R 234
+
Sbjct: 164 Q 164
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 36/151 (23%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 6 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 49
Query: 121 GKRVKLQLWDTSGQGRF---------CTIIRSY-----SRG-----AQGILLVYDITNKW 161
GK V L LWDT+GQ + T+ +Y SRG A L+ + + +
Sbjct: 50 GKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPA 109
Query: 162 SFDGI-DRWLKEVEEHAPGVPKVLVGNRLHL 191
SF+ + +W EV H P P +LVG +L L
Sbjct: 110 SFENVRAKWYPEVRHHCPNTPIILVGTKLDL 140
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--E 174
+ +D ++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 44 VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV 103
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSR 233
+ VP +LVGN+ L R V + + A + AF E S N+ E F +L R
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
Query: 234 R 234
+
Sbjct: 164 Q 164
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+LK ++VGD VGK +L Y FP ++ + + ++ +
Sbjct: 18 MLKCVVVGDGAVGKTCLLMS-YANDAFPEEYVP---------------TVFDHYAVSVTV 61
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHA 177
GK+ L L+DT+GQ + +R S + L+ + + N SF + + W+ E++E+A
Sbjct: 62 GGKQYLLGLYDTAGQEDY-DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 120
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEM 204
P VP +L+G ++ L + R +M
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDM 147
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + P ++ +D+ A +++D
Sbjct: 31 IKCVVVGDGAVGKTCLLIS-YTTNALPGEYI-----------PTVFDNYSA----NVMVD 74
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+GQ + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 75 GKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 134 NTPIILVGTKLDL 146
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 7 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+G + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 51 GKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 109
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 110 NTPIILVGTKLDL 122
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 10 IKCVVVGDVAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 53
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
K V L LWDT+GQ + +R S + L+ + + + S++ + +W EV H P
Sbjct: 54 SKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 112
Query: 179 GVPKVLVGNRLHLAFNRTVTT--REAEMYAIK-----------NQMAFFEVSPLCDFNIR 225
P +LVG +L L ++ +E ++ I + + + E S L ++
Sbjct: 113 STPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 172
Query: 226 ESFTELSRRAL 236
F E R L
Sbjct: 173 TVFDEAIRAVL 183
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGDS GK +L ++ + FP ++ E+ T + +D
Sbjct: 25 KIVVVGDSQCGKTALLH-VFAKDCFPENYVPTVFEN---------------YTASFEIDT 68
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
+R++L LWDTSG + + + +L+ +DI+ + D + +W E++E P
Sbjct: 69 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT 128
Query: 181 PKVLVGNRLHL 191
+LVG + L
Sbjct: 129 KMLLVGCKSDL 139
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 31 IKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 74
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
GK V L LWDT+G + +R S + L+ + + + SF+ + +W EV H P
Sbjct: 75 GKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 179 GVPKVLVGNRLHL 191
P +LVG +L L
Sbjct: 134 NTPIILVGTKLDL 146
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ +D+ A +++D
Sbjct: 11 IKCVVVGDVAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMVD 54
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
K V L LWDT+GQ + +R S + L+ + + + S++ + +W EV H P
Sbjct: 55 SKPVNLGLWDTAGQEDY-DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 113
Query: 179 GVPKVLVGNRLHLAFNRTVTT--REAEMYAIK-----------NQMAFFEVSPLCDFNIR 225
P +LVG +L L ++ +E ++ I + + + E S L ++
Sbjct: 114 STPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 173
Query: 226 ESFTELSRRAL 236
F E R L
Sbjct: 174 TVFDEAIRAVL 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGDS GK +L ++ + FP ++ E+ T + +D
Sbjct: 9 KIVVVGDSQCGKTALLH-VFAKDCFPENYVPTVFEN---------------YTASFEIDT 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
+R++L LWDTSG + + + +L+ +DI+ + D + +W E++E P
Sbjct: 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT 112
Query: 181 PKVLVGNRLHL 191
+LVG + L
Sbjct: 113 KMLLVGCKSDL 123
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L+K ++VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 155 LIKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMV 198
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHA 177
DGK V L LWDT+G + +R S + L+ + + + SF + +W EV H
Sbjct: 199 DGKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 178 PGVPKVLVGNRLHL 191
P P +LVG +L L
Sbjct: 258 PNTPIILVGTKLDL 271
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VGDS GK +L ++ + FP ++ E+ T + +D
Sbjct: 30 KIVVVGDSQCGKTALLH-VFAKDCFPENYVPTVFEN---------------YTASFEIDT 73
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGV 180
+R++L LWDTSG + + + +L+ +DI+ + D + +W E++E P
Sbjct: 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT 133
Query: 181 PKVLVGNRLHL 191
+LVG + L
Sbjct: 134 KMLLVGCKSDL 144
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L+K ++VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 155 LIKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMV 198
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHA 177
DGK V L LWDT+G + +R S + L+ + + + SF + +W EV H
Sbjct: 199 DGKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 178 PGVPKVLVGNRLHL 191
P P +LVG +L L
Sbjct: 258 PNTPIILVGTKLDL 271
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L+K ++VGD VGK +L Y + FP ++ +D+ A +++
Sbjct: 155 LIKCVVVGDGAVGKTCLLIS-YTTNAFPGEYI-----------PTVFDNYSA----NVMV 198
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHA 177
DGK V L LWDT+G + +R S + L+ + + + SF + +W EV H
Sbjct: 199 DGKPVNLGLWDTAGLEDY-DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 178 PGVPKVLVGNRLHL 191
P P +LVG +L L
Sbjct: 258 PNTPIILVGTKLDL 271
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
Q Q D + K +LVG+S VGK L+G + L G S + Y+
Sbjct: 17 QGQKDGIFKVMLVGESGVGKS-TLAGTF-------GGLQGDSAHEPENPEDTYE------ 62
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYS-RGAQGILLVYDITNKWSFDGIDRWLKE 172
I++D + V L ++D QG +R + + L+V+ +T++ SF + L
Sbjct: 63 -RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 121
Query: 173 VEEHAP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+ P +P +LVGN+ LA +R V+ E A E S N RE F
Sbjct: 122 LRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181
Query: 231 LSRRALQRNG 240
R+ R G
Sbjct: 182 AVRQIRLRRG 191
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T I ++G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I ++
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 174 EEHAPGV--PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
+ V P +LVGN+ L R ++ E + A AF E S
Sbjct: 104 LDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T I ++G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I ++
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 174 EEHAPGV--PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
+ V P +LVGN+ L R ++ E + A AF E S
Sbjct: 104 LDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T I ++G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I ++
Sbjct: 42 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 101
Query: 174 EEHAPGV--PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218
+ V P +LVGN+ L R ++ E + A AF E S
Sbjct: 102 LDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 148
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T I ++G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I ++
Sbjct: 39 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 98
Query: 174 EEHAPGV--PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218
+ V P +LVGN+ L R ++ E + A AF E S
Sbjct: 99 LDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 145
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 96 ESPFCSGSGKYDDMLAYKTTTILLDGK-RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV 154
E F G YD + + I+ GK L L DT+GQ + + S+ G G +LV
Sbjct: 46 EGEFSEG---YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102
Query: 155 YDITNKWSFDGIDRWLKEVEE-HAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212
Y +T+ SF I+ +++ E H VP VLVGN+ L+ R V E + A
Sbjct: 103 YSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT 162
Query: 213 FFEVS 217
F E S
Sbjct: 163 FMESS 167
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PAVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 11 IKCVVVGDGAVGKNCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 54
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 55 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
Query: 179 GVPKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVSPLCDFNIR 225
P +LVG ++ L + + +T AE A + + E S L ++
Sbjct: 114 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 173
Query: 226 ESFTELSRRALQRNGMERLWRS 247
F E AL+ ++ RS
Sbjct: 174 NVFDEAILAALEPPEPKKSRRS 195
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVSPLCDFNIR 225
P +LVG ++ L + + +T AE A + + E S L ++
Sbjct: 107 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Query: 226 ESFTELSRRALQRNGMERLWRS 247
F E AL+ ++ RS
Sbjct: 167 NVFDEAILAALEPPEPKKSRRS 188
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 6 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 49
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 50 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 109 KTPFLLVGTQIDL 121
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 5 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 49 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 107
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 108 KTPFLLVGTQIDL 120
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 14 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 57
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 58 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 116
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 117 KTPFLLVGTQIDL 129
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDVAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 7 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 51 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 110 KTPFLLVGTQIDL 122
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 11 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYVPTV-----------FDNY----AVTVMIG 54
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 55 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 114 KTPFLLVGTQIDL 126
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 6 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 49
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 50 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 109 KTPFLLVGTQIDL 121
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 7 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 50
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 51 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 110 KTPFLLVGTQIDL 122
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 8 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 52 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 110
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 111 KTPFLLVGTQIDL 123
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+ +
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVXIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLRDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 99 FCSGS--GKYDDMLA-YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVY 155
F +G+ KYD + + I +D L++ DT+G +F ++ Y + QG +LVY
Sbjct: 23 FVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY 82
Query: 156 DITNKWSFDGIDRWLKEV--EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213
+ N+ SF I ++ + VP +LVGN++ L R V++ E A + F
Sbjct: 83 SLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPF 142
Query: 214 FEVSPLCDFNIRESFTELSRR 234
E S + E F E+ R+
Sbjct: 143 METSAKSKTMVDELFAEIVRQ 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 37/212 (17%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQ---EILSGLYLESRFPRFWLDGSSESPFCS 101
M T V++++ Y + +L+G+ VGK I +G++ D
Sbjct: 23 MSTDSVISSESGNTYY-RVVLIGEQGVGKSTLANIFAGVH----------DSMDSDCEVL 71
Query: 102 GSGKYDDMLAYKTTTILLDGKR---VKLQLWDTSGQGRF----CTIIRSYSRGAQGILLV 154
G Y+ T+++DG+ + L +W+ G+ + C + L+V
Sbjct: 72 GEDTYE-------RTLMVDGESATIILLDMWENKGENEWLHDHCMQV------GDAYLIV 118
Query: 155 YDITNKWSFDGIDRWLKEVEE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212
Y IT++ SF+ ++ +P +LVGN+ L R V+ E A+
Sbjct: 119 YSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK 178
Query: 213 FFEVSPLCDFNIRESFTELSRRA-LQRNGMER 243
F E S N++E F + R+ L+R+ E+
Sbjct: 179 FIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++ P ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKLPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+GQ + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK ++VGD VGK +L + + P ++ E+ + ++ YK +L
Sbjct: 24 LKIVVVGDGAVGKTCLLLA-FSKGEIPTAYVPTVFEN--------FSHVMKYKNEEFIL- 73
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPG 179
LWDT+GQ + + + +LL + + N+ SFD I +W E++ +
Sbjct: 74 ------HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 127
Query: 180 VPKVLVGNRLHLAFNRT--VTTREAEMYAIK-NQMAFFEVSPLCDFNIRESF 228
VLVG ++ L + + VT +E + K +A+ E S + + E F
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+G + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 48 GEPYTLGLFDTAGLEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 107 KTPFLLVGTQIDL 119
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP ++ +D+ T+++
Sbjct: 8 IKCVVVGDGAVGKTCLLIS-YTTNKFPSEYV-----------PTVFDNY----AVTVMIG 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLV-YDITNKWSFDGI-DRWLKEVEEHAP 178
G+ L L+DT+G + +R S + LV + + + SF+ + ++W+ E+ H P
Sbjct: 52 GEPYTLGLFDTAGLEDY-DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 110
Query: 179 GVPKVLVGNRLHL 191
P +LVG ++ L
Sbjct: 111 KTPFLLVGTQIDL 123
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 48 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD 107
+PVVA K +LVGD GK +L L + +P ++ E+
Sbjct: 6 QPVVAR-------CKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFEN---------- 47
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD-GI 166
T + + +RV+L LWDTSG + + + +LL +DI+ + D +
Sbjct: 48 -----YTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 102
Query: 167 DRWLKEVEEHAPGVPKVLVGNRLHL 191
+W E+ ++ P +L+G + L
Sbjct: 103 KKWRTEILDYCPSTRVLLIGCKTDL 127
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK ++VGD VGK +L + + P ++ E+ + ++ YK +L
Sbjct: 23 LKIVVVGDGAVGKTCLLLA-FSKGEIPTAYVPTVFEN--------FSHVMKYKNEEFIL- 72
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPG 179
LWDT+GQ + + + +LL + + N+ SFD I +W E++ +
Sbjct: 73 ------HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 126
Query: 180 VPKVLVGNRLHLAFNRT--VTTREAEMYAIK-NQMAFFEVSPLCDFNIRESF 228
VLVG ++ L + + VT +E + K +A+ E S + + E F
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 48 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD 107
+PVVA K +LVGD GK +L L + +P ++ E+
Sbjct: 22 QPVVAR-------CKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFEN---------- 63
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD-GI 166
T + + +RV+L LWDTSG + + + +LL +DI+ + D +
Sbjct: 64 -----YTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 118
Query: 167 DRWLKEVEEHAPGVPKVLVGNRLHL 191
+W E+ ++ P +L+G + L
Sbjct: 119 KKWRTEILDYCPSTRVLLIGCKTDL 143
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 48 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD 107
+PVVA K +LVGD GK +L L + +P ++ E+
Sbjct: 5 QPVVAR-------CKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFEN---------- 46
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD-GI 166
T + + +RV+L LWDTSG + + + +LL +DI+ + D +
Sbjct: 47 -----YTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 101
Query: 167 DRWLKEVEEHAPGVPKVLVGNRLHL 191
+W E+ ++ P +L+G + L
Sbjct: 102 KKWRTEILDYCPSTRVLLIGCKTDL 126
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 62 KFLLVGDSDVGKQ---EILSGLYLESRFPRFWLDGSSESPFCSGSGKYDD--MLAYKTTT 116
+ +L+G+ VGK I +G++ D G Y+ M+ ++ T
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVH----------DSMDSDXEVLGEDTYERTLMVDGESAT 57
Query: 117 ILLDGKRVKLQLWDTSGQGRF----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
I+L L +W+ G+ + C + L+VY IT++ SF+ +
Sbjct: 58 IIL------LDMWENKGENEWLHDHCMQV------GDAYLIVYSITDRASFEKASELRIQ 105
Query: 173 VEE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+ +P +LVGN+ L R V+ E A+ F E S N++E F
Sbjct: 106 LRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEG 165
Query: 231 LSRRA-LQRNGMER 243
+ R+ L+R+ E+
Sbjct: 166 IVRQVRLRRDSKEK 179
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 62 KFLLVGDSDVGKQ---EILSGLYLESRFPRFWLDGSSESPFCSGSGKYDD--MLAYKTTT 116
+ +L+G+ VGK I +G++ D G Y+ M+ ++ T
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVH----------DSMDSDXEVLGEDTYERTLMVDGESAT 57
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE- 175
I+L L +W+ G+ + + L+VY IT++ SF+ ++
Sbjct: 58 IIL------LDMWENKGENEWLH--DHXMQVGDAYLIVYSITDRASFEKASELRIQLRRA 109
Query: 176 -HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+P +LVGN+ L R V+ E A+ F E S N++E F + R+
Sbjct: 110 RQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQ 169
Query: 235 A-LQRNGMER 243
L+R+ E+
Sbjct: 170 VRLRRDSKEK 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D + K +L+G+S VGK L+G + L G + + Y+ I
Sbjct: 10 DGVFKVMLLGESGVGKS-TLAGTF-------GGLQGDNAHEMENSEDTYE-------RRI 54
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYS-RGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
++D + V L ++D QG ++ + + L+V+ +T++ SF + L +
Sbjct: 55 MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG 114
Query: 177 AP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P +P +LVGN+ LA +R V+ E A E S N RE F R+
Sbjct: 115 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 174
Query: 235 ALQRNG 240
R G
Sbjct: 175 IRLRRG 180
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K +VG++ VGK ++S S+ +F D + SG + TT+
Sbjct: 22 KVAVVGEATVGKSALIS--MFTSKGSKFLKDYA----MTSGVEVVVAPVTIPDTTV---- 71
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP 181
V+L L DT+G + I Y G +LV+D+++ SF+ W + ++ P
Sbjct: 72 -SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE 130
Query: 182 K----VLVGNRLHLAFNR-TVTTREAEMYAIKNQMAFFEVS 217
+ VLV N+ L R V A+ +A N + FF+VS
Sbjct: 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVS 171
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+ K +LVG+S VGK L+G + L G + Y+ I++
Sbjct: 2 VFKVMLVGESGVGKS-TLAGTF-------GGLQGDHAHEMENSEDTYE-------RRIMV 46
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYS-RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP 178
D + V L ++D QG ++ + + L+V+ +T++ SF + L + P
Sbjct: 47 DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 106
Query: 179 --GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
+P +LVGN+ LA +R V+ E A E S N RE F
Sbjct: 107 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 116 TILLDGKR---VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
T+++DG+ + L +W+ G+ + + + L+VY IT++ SF+ +
Sbjct: 48 TLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQ 105
Query: 173 VEE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+ +P +LVGN+ L R V+ E A+ F E S N++E F
Sbjct: 106 LRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG 165
Query: 231 LSRRALQR 238
+ R+ R
Sbjct: 166 IVRQVRLR 173
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 119 LDGKRVKLQLWDTSG--QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+D + V L++ DT+ R C Y A L+VY + ++ SFD +L+ + H
Sbjct: 64 VDHQPVHLRVMDTADLDTPRNC---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120
Query: 177 AP----GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDF-NIRESFTEL 231
A +P +L+GN+L +A R VT E A + FFEVS DF +++ F E
Sbjct: 121 AKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180
Query: 232 SRRA 235
R A
Sbjct: 181 VREA 184
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 34/193 (17%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK-YDDMLAYKTTTIL 118
+ K LL+G VGK S R + G + P +G YD +I+
Sbjct: 7 VYKVLLLGAPGVGK----------SALARIF-GGVEDGPEAEAAGHTYD-------RSIV 48
Query: 119 LDGKRVKLQLWDTSGQ--GRF----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
+DG+ L ++D Q GR+ C + ++VY +T+K SF+ +
Sbjct: 49 VDGEEASLMVYDIWEQDGGRWLPGHCMAM------GDAYVIVYSVTDKGSFEKASELRVQ 102
Query: 173 VEE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+ VP +LVGN+ L +R V+ E A+ F E S N++ F
Sbjct: 103 LRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 231 LSRRA-LQRNGME 242
+ R+ L+R+ E
Sbjct: 163 VVRQIRLRRDSKE 175
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+ K LL+G VGK S R + G + P +G D +I++
Sbjct: 2 VYKVLLLGAPGVGK----------SALARIF-GGVEDGPEAEAAGHTYD------RSIVV 44
Query: 120 DGKRVKLQLWDTSGQ--GRF----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
DG+ L ++D Q GR+ C + ++VY +T+K SF+ ++
Sbjct: 45 DGEEASLMVYDIWEQDGGRWLPGHCMAM------GDAYVIVYSVTDKGSFEKASELRVQL 98
Query: 174 EE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
VP +LVGN+ L +R V+ E A+ F E S N++ F +
Sbjct: 99 RRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158
Query: 232 SRR 234
R+
Sbjct: 159 VRQ 161
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSR-----GAQGILLVYDITNKWSFDGIDRWL 170
T+ +DG+ L + DT + + +S+S+ G ++VY I ++ SF+
Sbjct: 44 TLTVDGEDTTLVVVDTWEAEK---LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELR 100
Query: 171 KEVE--EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
++ A VP +LVGN+ LA R V+ E A+ F E S N+ E F
Sbjct: 101 IQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 33/184 (17%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK-YDDMLAYKTTTIL 118
+ K LL+G VGK S R + G + P +G YD +I+
Sbjct: 7 VYKVLLLGAPGVGK----------SALARIF-GGVEDGPEAEAAGHTYD-------RSIV 48
Query: 119 LDGKRVKLQLWDTSGQ--GRF----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
+DG+ L ++D Q GR+ C + ++VY +T+K SF+ +
Sbjct: 49 VDGEEASLMVYDIWEQDGGRWLPGHCMAM------GDAYVIVYSVTDKGSFEKASELRVQ 102
Query: 173 VEE--HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+ VP +LVGN+ L +R V+ E A+ F E S N++ F
Sbjct: 103 LRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 231 LSRR 234
+ R+
Sbjct: 163 VVRQ 166
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPGVP 181
V ++LWD GQ RF ++ Y RG I+ + D ++ + L + + G+P
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 182 KVLVGNRLHL--AFNRTVTTREAEMYAIKNQ 210
+++GN+ L A + + + AI+++
Sbjct: 127 VLVLGNKRDLPGALDEKELIEKMNLSAIQDR 157
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD GQ + + R Y G QG++ V D ++ D ID +E+
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 413
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPGVP 181
V ++LWD GQ RF ++ Y RG I+ + D ++ + L + + G+P
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 182 KVLVGNRLHL--AFNRTVTTREAEMYAIKNQ 210
+++GN+ L A + + + AI+++
Sbjct: 136 VLVLGNKRDLPGALDEKELIEKMNLSAIQDR 166
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPGVP 181
V +++WD GQ RF ++ Y RG I+ + D ++ + L + + G+P
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 182 KVLVGNRLHL--AFNRTVTTREAEMYAIKNQ 210
+++GN+ L A + + + AI+++
Sbjct: 127 VLVLGNKRDLPNALDEKQLIEKMNLSAIQDR 157
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD GQ + + R Y G QG++ V D ++ D ID +E+
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 91
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
K VK +WD GQ + + R Y G QG++ V D ++ D
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 96
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD GQ + + R Y G QG++ V D ++ D ID +E+
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 91
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD GQ + + R Y G QG++ V D ++ D ID +E+
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 104
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD GQ + + R Y G QG++ V D ++ D ID +E+
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 91
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 50 VVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM 109
++ KQ + L+ L++G + GK IL E D + SP
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGE--------DVDTISP----------T 49
Query: 110 LAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
L + T L+ + KL +WD GQ + R+Y G++ V D ++ R
Sbjct: 50 LGFNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 170 LKE--VEEHAPGVPKVLVGNRLHL--AFNRTVTTREAEMYAIKNQ 210
L+ VEE G ++ N+ L A + E+ +I++
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSH 152
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 50 VVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM 109
++ KQ + L+ L++G + GK IL E D + SP
Sbjct: 6 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGE--------DIDTISP----------T 47
Query: 110 LAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
L + T L+ + KL +WD GQ + R+Y G++ V D ++ R
Sbjct: 48 LGFNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 170 LKE--VEEHAPGVPKVLVGNRLHL 191
L+ VEE G ++ N+ L
Sbjct: 106 LQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 50 VVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM 109
++ KQ + L+ L++G + GK IL E D + SP
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGE--------DVDTISP----------T 49
Query: 110 LAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW 169
L + T L+ + KL +WD GQ + R+Y G++ V D ++ R
Sbjct: 50 LGFNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 170 LKE--VEEHAPGVPKVLVGNRLHL 191
L+ VEE G ++ N+ L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDL 131
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ +K +++ L ++VG+S +GK +++ L+L +P + G++E K + +
Sbjct: 31 SVKKGFEFTL--MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE--------KIERTVQ 80
Query: 112 YKTTTILLDGKRVKLQLW--DTSGQG 135
+ +T+ ++ + VKL+L DT G G
Sbjct: 81 IEASTVEIEERGVKLRLTVVDTPGYG 106
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ R ++ R Y R +G++ V D ++
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ R ++ R Y R +G++ V D ++
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ R ++ R Y R +G++ V D ++
Sbjct: 42 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K +++ L ++VG+S +GK +++ L+L +P + G++E K + + +
Sbjct: 1 KKGFEFTL--MVVGESGLGKSTLINSLFLTDLYPERIIPGAAE--------KIERTVQIE 50
Query: 114 TTTILLDGKRVKLQLW--DTSGQG 135
+T+ ++ + VKL+L DT G G
Sbjct: 51 ASTVEIEERGVKLRLTVVDTPGYG 74
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ +K +++ L +VG+S +GK +++ L+L +P + G++E K + +
Sbjct: 31 SVKKGFEFTLX--VVGESGLGKSTLINSLFLTDLYPERVIPGAAE--------KIERTVQ 80
Query: 112 YKTTTILLDGKRVKLQLW--DTSGQG 135
+ +T+ ++ + VKL+L DT G G
Sbjct: 81 IEASTVEIEERGVKLRLTVVDTPGYG 106
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ +K +++ L +VG+S +GK +++ L+L +P + G++E K + +
Sbjct: 12 SVKKGFEFTLX--VVGESGLGKSTLINSLFLTDLYPERVISGAAE--------KIERTVQ 61
Query: 112 YKTTTILLDGKRVKLQLW--DTSGQG 135
+ +T+ ++ + VKL+L DT G G
Sbjct: 62 IEASTVEIEERGVKLRLTVVDTPGYG 87
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
K VK +WD G + + R Y G QG++ V D ++ D
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRID 86
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
K VK +WD G + + R Y G QG++ V D ++ D ID +E+
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELH 94
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
K VK +WD G + + R Y G QG++ V D ++ D
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN-KWSFDGIDRWLKEVEEHAPGVPKVL 184
L +WD +G+ F + + L VYD++ + D WL ++ A P +L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 185 VGNRLHLA 192
VG L ++
Sbjct: 118 VGTHLDVS 125
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE--VEEH 176
L+ + KL +WD GQ + R+Y G++ V D ++ R L+ VEE
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEER 116
Query: 177 APGVPKVLVGNRLHL--AFNRTVTTREAEMYAIKNQ 210
G ++ N+ L A + E+ +I++
Sbjct: 117 LAGATLLIFANKQDLPGALSXNAIQEALELDSIRSH 152
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN-KWSFDGIDRWLKEVEEHAPGVPKVL 184
L +WD +G+ F + + L VYD++ + D WL ++ A P +L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 185 VGNRLHLA 192
VG L ++
Sbjct: 116 VGTHLDVS 123
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 62 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 100
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 58 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 96
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP 181
K + +WD GQ + + R Y + QG++ V D ++ + V+E A +
Sbjct: 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVQESADELQ 120
Query: 182 KVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
K+L + L R+A + N+ P+ + + L R
Sbjct: 121 KMLQEDEL----------RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRT 164
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP 181
K + +WD GQ R + + Y + QG++ V D ++ + ++E A +
Sbjct: 59 KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDR----------ERIQEVADELQ 108
Query: 182 KVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
K+L+ + L A V A + N MA E++
Sbjct: 109 KMLLVDELRDA----VLLLFANKQDLPNAMAISEMT 140
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+L+ L++G + GK IL E D + SP L + T L
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGE--------DVDTISP----------TLGFNIKT--L 40
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE--VEEHA 177
+ + KL +WD G + R+Y G++ V D ++ R L+ VEE
Sbjct: 41 EHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 100
Query: 178 PGVPKVLVGNRLHL 191
G ++ N+ L
Sbjct: 101 AGATLLIFANKQDL 114
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + Q I+ V D ++
Sbjct: 59 KNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
Length = 187
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 317 ISLQELCCRAIVARTTVYAINQLPLPNLIKSHLK 350
SLQ +C I TT I+ LP+P+ +K +LK
Sbjct: 137 FSLQHICRTVICNCTTYDGIDALPIPSSMKLYLK 170
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
+ +WD GQ R ++ R Y +G++ V D ++
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDR 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,852,941
Number of Sequences: 62578
Number of extensions: 473749
Number of successful extensions: 1889
Number of sequences better than 100.0: 332
Number of HSP's better than 100.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 467
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)