BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3450
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96S21|RB40C_HUMAN Ras-related protein Rab-40C OS=Homo sapiens GN=RAB40C PE=1 SV=1
Length = 281
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 191/308 (62%), Gaps = 81/308 (26%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYLLKFLLVGDSDVGK EIL L DG++ESP+ Y + + YKT
Sbjct: 9 KSYDYLLKFLLVGDSDVGKGEILESLQ----------DGAAESPY-----AYSNGIDYKT 53
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TTILLDG+RVKL+LWDTSGQGRFCTI RSYSRGAQGILLVYDITN+WSFDGIDRW+KE++
Sbjct: 54 TTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEID 113
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
EHAPGVP++LVGNRLHLAF R V T +A YA KN M FFEVSPLC+FN+
Sbjct: 114 EHAPGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNV---------- 163
Query: 235 ALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCF 294
ESFTELSR L R+GME++WR N+
Sbjct: 164 -----------------------IESFTELSRIVLMRHGMEKIWRPNR------------ 188
Query: 295 AGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354
V SLQ+LCCRAIV+ T V+ I++LPLP IKSHLKS++M
Sbjct: 189 ---------------------VFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSM 227
Query: 355 TSYTTMTM 362
+ M
Sbjct: 228 ANGMNAVM 235
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 121/241 (50%), Gaps = 61/241 (25%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSD 70
K YDYLLKFLLVGDSDVGK EIL E+ A + Y Y
Sbjct: 9 KSYDYLLKFLLVGDSDVGKGEIL------------ESLQDGAAESPYAY----------S 46
Query: 71 VGKQEILSGLYLESRFPRFWL-DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLW 129
G + + L+ R + L D S + FC+ Y G + L ++
Sbjct: 47 NGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYS------------RGAQGILLVY 94
Query: 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189
D + + F I R W+KE++EHAPGVP++LVGNRL
Sbjct: 95 DITNRWSFDGIDR--------------------------WIKEIDEHAPGVPRILVGNRL 128
Query: 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNK 249
HLAF R V T +A YA KN M FFEVSPLC+FN+ ESFTELSR L R+GME++WR N+
Sbjct: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPNR 188
Query: 250 V 250
V
Sbjct: 189 V 189
>sp|Q8VHQ4|RB40C_MOUSE Ras-related protein Rab-40C OS=Mus musculus GN=Rab40c PE=2 SV=1
Length = 281
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 191/308 (62%), Gaps = 81/308 (26%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYLLKFLLVGDSDVGK EIL L DG++ESP+ Y + + YKT
Sbjct: 9 KSYDYLLKFLLVGDSDVGKGEILESLQ----------DGAAESPY-----AYSNGIDYKT 53
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TTILLDG+RVKL+LWDTSGQGRFCTI RSYSRGAQGILLVYDITN+WSFDGIDRW+KE++
Sbjct: 54 TTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEID 113
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
EHAPGVP++LVGNRLHLAF R V T +A YA KN M FFEVSPLC+FN+
Sbjct: 114 EHAPGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNV---------- 163
Query: 235 ALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCF 294
ESFTELSR L R+GME++WR N+
Sbjct: 164 -----------------------IESFTELSRIVLMRHGMEKIWRPNR------------ 188
Query: 295 AGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354
V SLQ+LCCRAIV+ T V+ I++LPLP IKSHLKS++M
Sbjct: 189 ---------------------VFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSM 227
Query: 355 TSYTTMTM 362
+ M
Sbjct: 228 ANGMNAVM 235
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 121/241 (50%), Gaps = 61/241 (25%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSD 70
K YDYLLKFLLVGDSDVGK EIL E+ A + Y Y
Sbjct: 9 KSYDYLLKFLLVGDSDVGKGEIL------------ESLQDGAAESPYAY----------S 46
Query: 71 VGKQEILSGLYLESRFPRFWL-DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLW 129
G + + L+ R + L D S + FC+ Y G + L ++
Sbjct: 47 NGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYS------------RGAQGILLVY 94
Query: 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189
D + + F I R W+KE++EHAPGVP++LVGNRL
Sbjct: 95 DITNRWSFDGIDR--------------------------WIKEIDEHAPGVPRILVGNRL 128
Query: 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNK 249
HLAF R V T +A YA KN M FFEVSPLC+FN+ ESFTELSR L R+GME++WR N+
Sbjct: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPNR 188
Query: 250 V 250
V
Sbjct: 189 V 189
>sp|Q12829|RB40B_HUMAN Ras-related protein Rab-40B OS=Homo sapiens GN=RAB40B PE=2 SV=1
Length = 278
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 201/332 (60%), Gaps = 92/332 (27%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ YD+LLKFLLVGDSDVGK EIL+ L DG++ESP+ +G + YKT
Sbjct: 9 RAYDFLLKFLLVGDSDVGKGEILASLQ----------DGAAESPYGHPAG-----IDYKT 53
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TTILLDG+RVKLQLWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSFDGIDRW+KE++
Sbjct: 54 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEID 113
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
EHAPGVPK+LVGNRLHLAF R V T +A+ YA + + FFEVSPLC+FNI ES
Sbjct: 114 EHAPGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITES------- 166
Query: 235 ALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCF 294
FTEL+R L R+GM+RLWR +K
Sbjct: 167 --------------------------FTELARIVLLRHGMDRLWRPSK------------ 188
Query: 295 AGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354
V+SLQ+LCCRA+V+ T V+ +++LPLP ++SHLKS++M
Sbjct: 189 ---------------------VLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSM 227
Query: 355 T-----------SYTTMTMTTSARQHTKKLRF 375
SY+ T +T R +K++
Sbjct: 228 ANGLNARMMHGGSYSLTTSSTHKRSSLRKVKL 259
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 122/241 (50%), Gaps = 61/241 (25%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSD 70
+ YD+LLKFLLVGDSDVGK EIL+ + A + Y +
Sbjct: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDG------------AAESPYGH----------P 46
Query: 71 VGKQEILSGLYLESRFPRFWL-DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLW 129
G + + L+ R + L D S + FC+ Y G + + ++
Sbjct: 47 AGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYS------------RGAQGVILVY 94
Query: 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189
D + + F D ++W +KE++EHAPGVPK+LVGNRL
Sbjct: 95 DIANRWSF------------------DGIDRW--------IKEIDEHAPGVPKILVGNRL 128
Query: 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNK 249
HLAF R V T +A+ YA + + FFEVSPLC+FNI ESFTEL+R L R+GM+RLWR +K
Sbjct: 129 HLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLWRPSK 188
Query: 250 V 250
V
Sbjct: 189 V 189
>sp|Q8VHP8|RB40B_MOUSE Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1
Length = 278
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/302 (50%), Positives = 190/302 (62%), Gaps = 81/302 (26%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ YD+LLKFLLVGDSDVGK EIL+ L DG++ESP+ +G + +KT
Sbjct: 9 RAYDFLLKFLLVGDSDVGKGEILASLQ----------DGAAESPYGHPAG-----IDHKT 53
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TTILLDG+RVKLQLWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSFDGI+RW+KE++
Sbjct: 54 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEID 113
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
EHAPGVPK+LVGNRLHLAF R V T +A+ YA + + FFEVSPLC+FNI ES
Sbjct: 114 EHAPGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITES------- 166
Query: 235 ALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCF 294
FTEL+R L R+GM+RLWR +K
Sbjct: 167 --------------------------FTELARIVLLRHGMDRLWRPSK------------ 188
Query: 295 AGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354
V+SLQELCCRA+V+ T + +++LPLP ++SHLKS++M
Sbjct: 189 ---------------------VLSLQELCCRAVVSCTPGHLVDKLPLPVALRSHLKSFSM 227
Query: 355 TS 356
S
Sbjct: 228 AS 229
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 136/241 (56%), Gaps = 61/241 (25%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSD 70
+ YD+LLKFLLVGDSDVGK EIL+ + A + Y +
Sbjct: 9 RAYDFLLKFLLVGDSDVGKGEILASLQDG------------AAESPYGH----------P 46
Query: 71 VGKQEILSGLYLESRFPRFWL-DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLW 129
G + + L+ R + L D S + FC+
Sbjct: 47 AGIDHKTTTILLDGRRVKLQLWDTSGQGRFCT---------------------------- 78
Query: 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189
I RSYSRGAQG++LVYDI N+WSFDGI+RW+KE++EHAPGVPK+LVGNRL
Sbjct: 79 ----------IFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEHAPGVPKILVGNRL 128
Query: 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNK 249
HLAF R V T +A+ YA + + FFEVSPLC+FNI ESFTEL+R L R+GM+RLWR +K
Sbjct: 129 HLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLWRPSK 188
Query: 250 V 250
V
Sbjct: 189 V 189
>sp|Q8WXH6|RB40A_HUMAN Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2
Length = 277
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 183/304 (60%), Gaps = 81/304 (26%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ + YD+LLKFLLVGD DVGK EIL L DG++ESP+ G +
Sbjct: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQ----------DGAAESPYSHLGG-----ID 50
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
YKTTTILLDG+RVKL+LWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSF+G+DRW+K
Sbjct: 51 YKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIK 110
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++EEHAPGVPK+LVGNRLHLAF R V +A+ YA + + FFEVSPLC+FNI
Sbjct: 111 KIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI------- 163
Query: 232 SRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQ 291
ESFTEL+R L R+ M L R +K
Sbjct: 164 --------------------------IESFTELARIVLLRHRMNWLGRPSK--------- 188
Query: 292 YCFAGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKS 351
V+SLQ+LCCR IV+ T V+ +++LPLP+ ++SHLKS
Sbjct: 189 ------------------------VLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKS 224
Query: 352 YAMT 355
++M
Sbjct: 225 FSMA 228
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 143/243 (58%), Gaps = 59/243 (24%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67
+ + YD+LLKFLLVGD DVGK EIL E+ A + Y +L G
Sbjct: 6 SPDQAYDFLLKFLLVGDRDVGKSEIL------------ESLQDGAAESPYSHL------G 47
Query: 68 DSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQ 127
D IL LDG +RVKL+
Sbjct: 48 GIDYKTTTIL-------------LDG----------------------------QRVKLK 66
Query: 128 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGN 187
LWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSF+G+DRW+K++EEHAPGVPK+LVGN
Sbjct: 67 LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVPKILVGN 126
Query: 188 RLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRS 247
RLHLAF R V +A+ YA + + FFEVSPLC+FNI ESFTEL+R L R+ M L R
Sbjct: 127 RLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRMNWLGRP 186
Query: 248 NKV 250
+KV
Sbjct: 187 SKV 189
>sp|P0C0E4|RB40L_HUMAN Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=1
SV=1
Length = 278
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 192/335 (57%), Gaps = 92/335 (27%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ + YD+LLKFLLVGD DVGK EIL L DG++ESP+ G +
Sbjct: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQ----------DGTAESPYSHLGG-----ID 50
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
YKTTTILLDG+RVKL+LWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSF+G+DRW+K
Sbjct: 51 YKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIK 110
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++EEHAPGVPK+LVGNRLHLAF R V +A+ YA + + FFEVSPLC+FNI
Sbjct: 111 KIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI------- 163
Query: 232 SRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQ 291
ESFTEL+R L R+ + L R +K
Sbjct: 164 --------------------------IESFTELARIVLLRHRLNWLGRPSK--------- 188
Query: 292 YCFAGLVRPSVDVNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKS 351
V+SLQ+LCCR IV+ T V+ +++LPLP ++SHLKS
Sbjct: 189 ------------------------VLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKS 224
Query: 352 YAMT-----------SYTTMTMTTSARQHTKKLRF 375
++M SY+ T +T R K++
Sbjct: 225 FSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKI 259
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 144/243 (59%), Gaps = 59/243 (24%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67
+ + YD+LLKFLLVGD DVGK EIL + + TA + Y +L G
Sbjct: 6 SPDQAYDFLLKFLLVGDRDVGKSEILESLQ-DGTA-----------ESPYSHL------G 47
Query: 68 DSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQ 127
D IL LDG +RVKL+
Sbjct: 48 GIDYKTTTIL-------------LDG----------------------------QRVKLK 66
Query: 128 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGN 187
LWDTSGQGRFCTI RSYSRGAQG++LVYDI N+WSF+G+DRW+K++EEHAPGVPK+LVGN
Sbjct: 67 LWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVPKILVGN 126
Query: 188 RLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRS 247
RLHLAF R V +A+ YA + + FFEVSPLC+FNI ESFTEL+R L R+ + L R
Sbjct: 127 RLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRLNWLGRP 186
Query: 248 NKV 250
+KV
Sbjct: 187 SKV 189
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 118/196 (60%), Gaps = 16/196 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD+L K LL+GDS VGK ++ RF D + S + S G + +K
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLI---------IRFAEDNFN-STYISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ SF+ I W+K ++
Sbjct: 48 RTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+A GV ++L+GN+ + R V +AE A ++++ FFE S N+ E+F+ L+R
Sbjct: 108 ENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLAR 167
Query: 234 RALQRNGMERLWRSNK 249
L + G R S+K
Sbjct: 168 DILLKTGGRRSGNSSK 183
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL---------FRFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL---------FRFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLAR 167
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RFSEDAFN-STFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVL 25
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 110/185 (59%), Gaps = 17/185 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
YDYL+K LL+GDS VGK +L RF DGS + F + G + +K
Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLL------RFS----DGSFTTSFITTIG-----IDFKIR 55
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF+ I W++ +E+
Sbjct: 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ 115
Query: 176 HA-PGVPKVLVGNRLHL-AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
HA V K+LVGN+ + R V T + + A + + FFE S + N+ E F ++R
Sbjct: 116 HASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
Query: 234 RALQR 238
QR
Sbjct: 176 DIKQR 180
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 12 QYDYLLKFLLVGDSDVGKQEIL 33
YDYL+K LL+GDS VGK +L
Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLL 32
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL 25
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 115/190 (60%), Gaps = 16/190 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD+L K LL+GDS VGK ++ RF D + S + S G + +K
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLI---------IRFAED-NFNSTYISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ SF+ I W+K ++
Sbjct: 48 RTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+A GV ++L+GN+ + R V +AE A ++++ FFE S N+ E+F+ L+R
Sbjct: 108 ENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLAR 167
Query: 234 RALQRNGMER 243
L + G R
Sbjct: 168 DILLKTGGRR 177
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 109/185 (58%), Gaps = 17/185 (9%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
YDYL+K LL+GDS VGK +L RF DGS + F + G + +K
Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLL------RFS----DGSFTTSFITTIG-----IDFKIR 55
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF+ I W++ +E+
Sbjct: 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ 115
Query: 176 HA-PGVPKVLVGNRLHL-AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
HA V K+LVGN+ + R V T + + A + + FFE S + N+ E F + R
Sbjct: 116 HASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGR 175
Query: 234 RALQR 238
QR
Sbjct: 176 DIKQR 180
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 12 QYDYLLKFLLVGDSDVGKQEIL 33
YDYL+K LL+GDS VGK +L
Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLL 32
>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1
Length = 200
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDFK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLA 167
Query: 233 RRALQRNGMERLWRSN 248
LQ+ ++ R N
Sbjct: 168 EDILQKTPVKEPDREN 183
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 119/196 (60%), Gaps = 16/196 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD+L K LL+GDS VGK ++ RF D + + + S G + ++
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLI---------IRFAEDNFNNT-YISTIG-----IDFRI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ SF+ I W+K ++
Sbjct: 48 RTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+A GV ++L+GN+ + R V +A+ A ++ + FFE S N+ E+F+ L+R
Sbjct: 108 ENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR 167
Query: 234 RALQRNGMERLWRSNK 249
L ++G RL +NK
Sbjct: 168 DILLKSGGRRLKNNNK 183
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL 25
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL 25
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL 25
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL K LL+GDS VGK +L
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL 25
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 17/184 (9%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL+K LL+GDS VGK +L RF DGS + F + G + +K T
Sbjct: 12 YDYLIKLLLIGDSGVGKSCLLL------RFS----DGSFTTSFITTIG-----IDFKIRT 56
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF+ I W++ +E+H
Sbjct: 57 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH 116
Query: 177 A-PGVPKVLVGNRLHL-AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
A V K+LVGN+ + R V + + A + M FFE S + N+ E F +++
Sbjct: 117 ASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKD 176
Query: 235 ALQR 238
QR
Sbjct: 177 IKQR 180
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 13 YDYLLKFLLVGDSDVGKQEIL 33
YDYL+K LL+GDS VGK +L
Sbjct: 12 YDYLIKLLLIGDSGVGKSCLL 32
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLL---------FRFSEDAFN-TTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ LDGK++KLQ+WDT+GQ RF TI +Y RGA GI+ VYDITN+ SFD I W++ +E
Sbjct: 48 RTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIE 107
Query: 175 EHAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V ++++GN+ + R V+ E AI + F E S N+ E+F L+R
Sbjct: 108 EHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLAR 167
Query: 234 RALQR 238
+ +
Sbjct: 168 DIMTK 172
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 11 KQYDYLLKFLLVGDSDVGK 29
K YDYL K LL+GDS VGK
Sbjct: 3 KTYDYLFKLLLIGDSGVGK 21
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 104/176 (59%), Gaps = 16/176 (9%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+ +YDYL K +L+GDS VGK +L RF R + S+S + +
Sbjct: 4 EDEYDYLFKTVLIGDSGVGKSNLLM------RFTRNEFNIESKSTIG---------VEFA 48
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T I+LD K++K Q+WDT+GQ R+ I +Y RGA G L+VYDIT + SFD + RWLKE+
Sbjct: 49 TRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKEL 108
Query: 174 EEHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
EHA + +LVGN+ L R V+T EA+ +A +N ++F E S + N+ E+F
Sbjct: 109 REHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAF 164
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK L+ RF D + + F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKT---CALF------RFSEDAFN-ATFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SF+ I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIE 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA P V K+++GN+ R V+ + E A + F E S + NI +F L+R
Sbjct: 108 EHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLAR 167
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 11 KQYDYLLKFLLVGDSDVGK 29
K YDYL K LL+GDS VGK
Sbjct: 3 KTYDYLFKLLLIGDSGVGK 21
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 117/196 (59%), Gaps = 16/196 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD+L K LL+GDS VGK ++ RF D + + + S G + +K
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLI---------IRFAEDNFNNT-YISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GK++KLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ SF+ I W+K ++
Sbjct: 48 RTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+A GV ++L+GN+ + R V +A+ A ++ + FFE S N+ E+F+ L+R
Sbjct: 108 ENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR 167
Query: 234 RALQRNGMERLWRSNK 249
L ++G R NK
Sbjct: 168 DILLKSGGRRSGNGNK 183
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 16/190 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YD+L K LL+GDS VGK ++ RF D + + + S G + +K
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLI---------IRFAEDNFNNT-YISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++GKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ SF+ I W+K ++
Sbjct: 48 RTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+A GV ++L+GN+ + R V +A+ A ++ + FFE S N+ E+F L+R
Sbjct: 108 ENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLAR 167
Query: 234 RALQRNGMER 243
L ++G R
Sbjct: 168 DILLKSGGRR 177
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 112/181 (61%), Gaps = 17/181 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K+YDYL K +++GDS GK +L RF + SES + S G + +K
Sbjct: 2 KEYDYLFKIIVIGDSGTGKSSLL---------LRFADNTYSES-YMSTIG-----VDFKI 46
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEV 173
T+ +D +KLQ+WDT+GQ RF TI +Y RGA GI+ VYD+TNK SFD I + WL+++
Sbjct: 47 KTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDI 106
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+++A V K+L+GN++ LA +R V+ EA+ A +N M + E S D N+ ++FT ++
Sbjct: 107 DKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIA 166
Query: 233 R 233
+
Sbjct: 167 K 167
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDFK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
Query: 233 RRALQR 238
L++
Sbjct: 168 EDILRK 173
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDFK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
Query: 233 RRALQR 238
L++
Sbjct: 168 EDILRK 173
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDFK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
Query: 233 RRALQR 238
L++
Sbjct: 168 EDILRK 173
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + +K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDFK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLA 167
Query: 233 RRALQR 238
L++
Sbjct: 168 EDILRK 173
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+K YD L K LL+GDS VGK +L RF D + + F S G + K
Sbjct: 3 KKTYDLLFKLLLIGDSGVGKTCVLF------RFS----DDAFNTTFISTIG-----IDLK 47
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ L GK++KLQ+WDT+GQ RF TI SY RGA GI+LVYDITN SF+ I +WL+ +
Sbjct: 48 IKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNI 107
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+EHA V ++L+GN+ + R V + E A ++ + FFE S + NI ++F L+
Sbjct: 108 DEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
Query: 233 RRALQR 238
L++
Sbjct: 168 EDILRK 173
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 16/180 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K LL+G+S VGK +L RF D + + + S G + +K
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLL------RFS----DDTYTNDYISTIG-----VDFKIK 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 49 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108
Query: 176 HAPG-VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R+
Sbjct: 109 YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 17/181 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K+YDYL K +++GDS GK +L RF + SES + S G + +K
Sbjct: 2 KEYDYLFKIIVIGDSGTGKSSLL---------LRFADNTYSES-YMSTIG-----VDFKI 46
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEV 173
T+ +D +KLQ+WDT+GQ RF TI +Y RGA GI+ VYD+TNK SFD I + WL+++
Sbjct: 47 KTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDI 106
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+++A V K+L+GN++ L +R V EA+ A +N M + E S D N+ ++FT ++
Sbjct: 107 DKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIA 166
Query: 233 R 233
+
Sbjct: 167 K 167
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL+K LL+GDS VGK +L RF D + S F + G + +K
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLL---------LRFSEDSFTPS-FITTIG-----IDFKI 48
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILL+YD+T+K SFD + W VE
Sbjct: 49 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVE 108
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+HA V K+L+GN+ R V+ + + A + + F E S + N+ E+F L+R
Sbjct: 109 QHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAR 168
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEIL 33
K YDYL+K LL+GDS VGK +L
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLL 26
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
++DYL K LL+GDS VGK S F + D S + S G + +K
Sbjct: 4 EFDYLFKLLLIGDSSVGK----------SCFLLRFADDSYVDSYISTIG-----VDFKIR 48
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
T+ ++GK VKLQ+WDT+GQ RF TI SY RGA GI++VYDIT+ SF+ + +WL E++
Sbjct: 49 TVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDR 108
Query: 176 HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+A V K+LVGN+ LA NR V T A+ YA + + F E S N+ E+F +S
Sbjct: 109 YANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMS 166
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 16/193 (8%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY 106
T P YDYL+K LL+GDS VGK +L RF D + S F + G
Sbjct: 2 TSPATNKSAAYDYLIKLLLIGDSGVGKSCLL---------LRFSEDSFTPS-FITTIG-- 49
Query: 107 DDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI 166
+ +K TI L+GKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF I
Sbjct: 50 ---IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNI 106
Query: 167 DRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
W++ +E+HA V K+L+GN+ +A + V + + A + + F E S N+
Sbjct: 107 RNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVE 166
Query: 226 ESFTELSRRALQR 238
E+F L++ +R
Sbjct: 167 EAFISLAKDIKKR 179
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 3 TKPVVATQKQYDYLLKFLLVGDSDVGKQEIL 33
T P YDYL+K LL+GDS VGK +L
Sbjct: 2 TSPATNKSAAYDYLIKLLLIGDSGVGKSCLL 32
>sp|P35289|RAB15_RAT Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1
Length = 212
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 118/214 (55%), Gaps = 20/214 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
KQYD L + LL+GDS VGK +L RF D S S G + +K
Sbjct: 3 KQYDVLFRLLLIGDSGVGKTCLLC------RFT----DNEFHSSHISTIG-----VDFKM 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI +DG +V++Q+WDT+GQ R+ TI + Y R AQGI LVYDI+++ S+ I +W+ +V+
Sbjct: 48 KTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVD 107
Query: 175 EHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+AP GV K+L+GN+ R V + + A + M F+E S + NI+ESFT L+
Sbjct: 108 EYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTE 167
Query: 234 RALQRNGME----RLWRSNKVGRKPLINFESFTE 263
LQ + E R SN++ L E TE
Sbjct: 168 LVLQAHRKELDGLRTCASNELALAELEEDEGKTE 201
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2
SV=4
Length = 218
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE
Sbjct: 112 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 171
Query: 231 LSRRALQRNGMER 243
+ R Q+ +R
Sbjct: 172 IYRIVSQKQIADR 184
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 47
>sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4
Length = 218
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE
Sbjct: 112 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 171
Query: 231 LSRRALQRNGMER 243
+ R Q+ +R
Sbjct: 172 IYRIVSQKQIADR 184
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 47
>sp|Q3MHP2|RB11B_BOVIN Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
Length = 218
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE
Sbjct: 112 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 171
Query: 231 LSRRALQRNGMER 243
+ R Q+ +R
Sbjct: 172 IYRIVSQKQIADR 184
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 47
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
Length = 218
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE
Sbjct: 112 HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 171
Query: 231 LSRRALQRNGMER 243
+ R Q+ +R
Sbjct: 172 IYRIVSQKQIADR 184
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 47
>sp|P22129|RB11B_DIPOM Ras-related protein Rab-11B OS=Diplobatis ommata PE=2 SV=1
Length = 218
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT 115
+YDYL K +L+GDS VGK +LS RF R + S+S + + T
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFNLESKSTIG---------VEFATR 51
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +
Sbjct: 52 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 111
Query: 176 HAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF----TE 230
HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F TE
Sbjct: 112 HADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 171
Query: 231 LSRRALQRNGMER 243
+ R Q+ +R
Sbjct: 172 IYRIVSQKQISDR 184
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQ 54
+YDYL K +L+GDS VGK +LS + + +E+K + +
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLS--RFTRNEFNLESKSTIGVE 47
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 112/196 (57%), Gaps = 18/196 (9%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
M P A + YDYL+K LL+GDS VGK +L RF D + + F + G
Sbjct: 1 MAVAPARA-RSDYDYLIKLLLIGDSGVGKSCLLL------RFS----DDTFTTSFITTIG 49
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ +K T+ LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF+
Sbjct: 50 -----IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
Query: 165 GIDRWLKEVEEHA-PGVPKVLVGNRLHL-AFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222
I W+K +E+HA V K+LVGN+ + R V T + + A + + FFE S +
Sbjct: 105 NIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNL 164
Query: 223 NIRESFTELSRRALQR 238
N+ F +++ QR
Sbjct: 165 NVENVFMSIAKDIKQR 180
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGKQEIL 33
M P A + YDYL+K LL+GDS VGK +L
Sbjct: 1 MAVAPARA-RSDYDYLIKLLLIGDSGVGKSCLL 32
>sp|P59190|RAB15_HUMAN Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1
Length = 212
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 16/189 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
KQYD L + LL+GDS VGK +L RF D S S G + +K
Sbjct: 3 KQYDVLFRLLLIGDSGVGKTCLLC------RFT----DNEFHSSHISTIG-----VDFKM 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI +DG +V++Q+WDT+GQ R+ TI + Y R AQGI LVYDI+++ S+ I +W+ +V+
Sbjct: 48 KTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVD 107
Query: 175 EHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
E+AP GV K+L+GN+ R V + + A + M F+E S + NI+ESFT L+
Sbjct: 108 EYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTE 167
Query: 234 RALQRNGME 242
LQ + E
Sbjct: 168 LVLQAHRKE 176
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
M P A + YDYL+K LL+GDS VGK S L L RF D + + F + G
Sbjct: 1 MAVAPARA-RSDYDYLIKLLLIGDSGVGK----SCLLL--RFS----DDTFTTSFITTIG 49
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ +K T+ LDGKR+KLQ+WDT+GQ RF TI +Y RGA GILLVYD+T++ SF+
Sbjct: 50 -----IDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
Query: 165 GIDRWLKEVEEHA-PGVPKVLVGNRLHL-AFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222
I W+K +E+HA V K+LVGN+ + R V T + + A + + FFE S +
Sbjct: 105 NIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQ 164
Query: 223 NIRESFTELSRRALQR 238
N+ + F +++ QR
Sbjct: 165 NVEQVFLSIAKDIKQR 180
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGKQEIL 33
M P A + YDYL+K LL+GDS VGK +L
Sbjct: 1 MAVAPARA-RSDYDYLIKLLLIGDSGVGKSCLL 32
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,146,805
Number of Sequences: 539616
Number of extensions: 6472891
Number of successful extensions: 19927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 17599
Number of HSP's gapped (non-prelim): 1540
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)