Query psy3450
Match_columns 432
No_of_seqs 442 out of 3136
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:59:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.5E-39 9.8E-44 290.3 17.7 178 54-246 3-182 (205)
2 KOG0078|consensus 100.0 1.4E-37 3.1E-42 284.3 18.7 177 56-247 8-185 (207)
3 KOG0098|consensus 100.0 6.2E-36 1.3E-40 267.0 15.0 169 57-240 3-172 (216)
4 KOG0092|consensus 100.0 1.4E-35 2.9E-40 266.8 16.8 170 59-243 4-174 (200)
5 KOG0094|consensus 100.0 1.1E-35 2.3E-40 267.5 16.0 167 59-240 21-189 (221)
6 KOG0080|consensus 100.0 3E-35 6.6E-40 256.4 14.0 171 55-240 6-178 (209)
7 cd04121 Rab40 Rab40 subfamily. 100.0 5.5E-34 1.2E-38 264.2 21.1 170 57-241 3-172 (189)
8 KOG0079|consensus 100.0 4.2E-35 9.2E-40 252.3 11.0 170 55-239 3-172 (198)
9 KOG0093|consensus 100.0 4.9E-34 1.1E-38 245.5 13.9 174 51-239 12-186 (193)
10 KOG0087|consensus 100.0 8.4E-34 1.8E-38 258.5 15.1 175 54-243 8-183 (222)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.6E-33 2.1E-37 254.4 19.1 164 58-237 3-181 (182)
12 KOG0394|consensus 100.0 3.1E-33 6.7E-38 249.3 15.0 169 57-240 6-182 (210)
13 cd04133 Rop_like Rop subfamily 100.0 2.3E-32 4.9E-37 250.6 19.4 161 61-237 2-174 (176)
14 cd04120 Rab12 Rab12 subfamily. 100.0 3.4E-32 7.5E-37 254.7 20.3 163 61-238 1-165 (202)
15 KOG0086|consensus 100.0 3.6E-33 7.9E-38 241.5 11.7 176 54-244 3-179 (214)
16 cd04131 Rnd Rnd subfamily. Th 100.0 4.2E-32 9.1E-37 249.1 18.8 161 60-236 1-176 (178)
17 KOG0095|consensus 100.0 1.3E-32 2.8E-37 237.2 12.8 172 55-241 2-174 (213)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2E-31 4.3E-36 254.3 21.8 166 57-238 10-190 (232)
19 cd01875 RhoG RhoG subfamily. 100.0 1.4E-31 3.1E-36 248.0 19.1 163 60-238 3-179 (191)
20 KOG0091|consensus 100.0 3.2E-32 6.9E-37 238.1 13.6 172 58-244 6-181 (213)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4E-31 8.6E-36 240.9 19.4 164 60-239 2-167 (172)
22 cd04122 Rab14 Rab14 subfamily. 100.0 5.3E-31 1.2E-35 237.4 19.3 163 60-237 2-165 (166)
23 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.5E-31 1.4E-35 240.2 18.8 159 61-235 2-174 (175)
24 KOG0081|consensus 100.0 1.5E-32 3.3E-37 239.1 5.8 171 55-240 4-185 (219)
25 KOG0088|consensus 100.0 7.3E-32 1.6E-36 234.7 9.8 177 54-245 7-184 (218)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 2.3E-30 4.9E-35 233.7 19.3 165 58-237 1-166 (167)
27 cd04127 Rab27A Rab27a subfamil 100.0 2.2E-30 4.7E-35 236.1 18.9 166 58-238 2-179 (180)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3E-30 6.5E-35 240.6 19.0 165 61-240 1-172 (201)
29 cd04110 Rab35 Rab35 subfamily. 100.0 5E-30 1.1E-34 239.0 20.2 169 57-240 3-171 (199)
30 cd04136 Rap_like Rap-like subf 100.0 3.8E-30 8.2E-35 229.8 18.4 159 61-235 2-162 (163)
31 cd04117 Rab15 Rab15 subfamily. 100.0 4E-30 8.7E-35 231.2 18.2 159 61-234 1-160 (161)
32 cd01873 RhoBTB RhoBTB subfamil 100.0 5.1E-30 1.1E-34 238.8 19.2 169 60-234 2-194 (195)
33 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.8E-30 1.5E-34 229.8 19.4 163 60-237 2-165 (166)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 7.5E-30 1.6E-34 242.1 20.4 164 61-240 2-180 (222)
35 PF00071 Ras: Ras family; Int 100.0 5.2E-30 1.1E-34 229.1 17.5 160 62-236 1-161 (162)
36 cd01871 Rac1_like Rac1-like su 100.0 6.6E-30 1.4E-34 233.3 18.4 158 61-234 2-173 (174)
37 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-29 2.5E-34 228.6 19.4 162 61-237 2-164 (165)
38 cd04144 Ras2 Ras2 subfamily. 100.0 9.5E-30 2.1E-34 235.2 18.5 164 62-241 1-168 (190)
39 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-29 2.4E-34 228.0 18.3 159 61-235 2-162 (164)
40 PTZ00369 Ras-like protein; Pro 100.0 1.6E-29 3.4E-34 233.6 19.7 164 60-239 5-170 (189)
41 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-29 2.6E-34 234.4 19.0 161 62-238 2-176 (189)
42 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-29 2.8E-34 233.3 18.5 161 61-237 1-167 (182)
43 KOG0083|consensus 100.0 2.9E-31 6.2E-36 225.0 6.0 161 64-239 1-163 (192)
44 PLN03071 GTP-binding nuclear p 100.0 2.4E-29 5.2E-34 238.3 19.8 166 58-240 11-176 (219)
45 cd04119 RJL RJL (RabJ-Like) su 100.0 2.1E-29 4.6E-34 225.2 18.3 161 61-236 1-167 (168)
46 cd01866 Rab2 Rab2 subfamily. 100.0 3.3E-29 7.2E-34 226.5 19.6 166 57-237 1-167 (168)
47 cd04176 Rap2 Rap2 subgroup. T 100.0 2.4E-29 5.2E-34 225.3 18.2 159 61-235 2-162 (163)
48 cd04125 RabA_like RabA-like su 100.0 3.8E-29 8.2E-34 230.4 19.6 169 61-244 1-170 (188)
49 cd01868 Rab11_like Rab11-like. 100.0 4.7E-29 1E-33 223.9 18.8 162 59-235 2-164 (165)
50 cd04111 Rab39 Rab39 subfamily. 100.0 4.1E-29 8.9E-34 235.3 19.2 168 60-242 2-172 (211)
51 PLN03110 Rab GTPase; Provision 100.0 6.4E-29 1.4E-33 234.8 20.2 170 56-240 8-178 (216)
52 cd04109 Rab28 Rab28 subfamily. 100.0 3.8E-29 8.1E-34 236.0 18.3 163 61-238 1-168 (215)
53 cd04106 Rab23_lke Rab23-like s 100.0 4.4E-29 9.6E-34 222.9 17.5 159 61-234 1-161 (162)
54 smart00174 RHO Rho (Ras homolo 100.0 4.3E-29 9.4E-34 226.0 17.6 159 63-237 1-173 (174)
55 smart00173 RAS Ras subfamily o 100.0 7.5E-29 1.6E-33 222.1 18.4 160 61-236 1-162 (164)
56 cd04140 ARHI_like ARHI subfami 100.0 8.4E-29 1.8E-33 223.0 18.7 158 61-234 2-163 (165)
57 cd01864 Rab19 Rab19 subfamily. 100.0 7.7E-29 1.7E-33 222.9 18.4 162 58-234 1-164 (165)
58 cd00877 Ran Ran (Ras-related n 100.0 9.3E-29 2E-33 223.7 18.7 161 61-238 1-161 (166)
59 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 9E-29 1.9E-33 224.9 18.6 161 62-237 2-166 (170)
60 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-28 2.6E-33 219.1 18.7 158 61-235 2-161 (162)
61 cd04132 Rho4_like Rho4-like su 100.0 1.1E-28 2.3E-33 226.7 18.8 164 61-240 1-171 (187)
62 PLN03108 Rab family protein; P 100.0 1.6E-28 3.5E-33 231.0 20.4 169 57-240 3-172 (210)
63 KOG0097|consensus 100.0 2.8E-29 6.1E-34 214.9 13.7 174 55-243 6-180 (215)
64 cd04112 Rab26 Rab26 subfamily. 100.0 1.5E-28 3.2E-33 227.4 19.5 165 61-239 1-166 (191)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.5E-28 3.4E-33 219.6 18.9 160 60-235 2-163 (164)
66 smart00176 RAN Ran (Ras-relate 100.0 1.5E-28 3.3E-33 229.7 18.9 158 66-240 1-158 (200)
67 cd04113 Rab4 Rab4 subfamily. 100.0 1.4E-28 3E-33 220.0 17.4 159 61-234 1-160 (161)
68 cd04116 Rab9 Rab9 subfamily. 100.0 1.8E-28 4E-33 221.3 18.4 161 58-234 3-169 (170)
69 cd04103 Centaurin_gamma Centau 100.0 1.5E-28 3.3E-33 221.0 17.4 152 61-234 1-157 (158)
70 cd04124 RabL2 RabL2 subfamily. 100.0 2.5E-28 5.5E-33 219.4 18.2 160 61-238 1-160 (161)
71 cd04126 Rab20 Rab20 subfamily. 100.0 2.3E-28 5E-33 231.7 18.8 159 61-239 1-193 (220)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.7E-28 7.9E-33 220.1 18.4 161 60-235 2-168 (170)
73 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.8E-28 8.2E-33 220.6 18.0 157 61-233 1-171 (173)
74 cd04118 Rab24 Rab24 subfamily. 100.0 7.7E-28 1.7E-32 222.2 19.5 165 61-239 1-169 (193)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.7E-28 1.2E-32 216.4 17.6 161 61-235 1-163 (164)
76 cd04142 RRP22 RRP22 subfamily. 100.0 7.5E-28 1.6E-32 224.6 19.0 164 61-239 1-177 (198)
77 cd04148 RGK RGK subfamily. Th 100.0 1.6E-27 3.5E-32 226.1 21.4 197 61-274 1-200 (221)
78 smart00175 RAB Rab subfamily o 100.0 1E-27 2.2E-32 214.0 18.4 162 61-237 1-163 (164)
79 KOG0395|consensus 100.0 7.3E-28 1.6E-32 224.2 17.9 164 60-239 3-168 (196)
80 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-27 2.3E-32 216.9 18.4 159 61-235 1-173 (174)
81 cd04143 Rhes_like Rhes_like su 100.0 8.9E-28 1.9E-32 231.6 18.6 160 61-236 1-171 (247)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 2E-27 4.4E-32 214.6 18.8 160 61-236 2-164 (168)
83 cd04146 RERG_RasL11_like RERG/ 100.0 9.9E-28 2.2E-32 215.6 16.3 159 62-236 1-164 (165)
84 cd01861 Rab6 Rab6 subfamily. 100.0 1.8E-27 3.8E-32 212.3 17.8 159 61-234 1-160 (161)
85 cd01892 Miro2 Miro2 subfamily. 100.0 2E-27 4.4E-32 215.7 16.9 164 59-237 3-167 (169)
86 cd01860 Rab5_related Rab5-rela 100.0 4.7E-27 1E-31 210.0 18.7 160 61-235 2-162 (163)
87 PLN03118 Rab family protein; P 100.0 5.3E-27 1.2E-31 220.4 19.8 169 54-238 8-179 (211)
88 KOG0393|consensus 100.0 5.5E-28 1.2E-32 221.9 12.4 166 59-240 3-183 (198)
89 cd01862 Rab7 Rab7 subfamily. 99.9 9.6E-27 2.1E-31 209.6 19.1 163 61-238 1-169 (172)
90 cd01870 RhoA_like RhoA-like su 99.9 1E-26 2.2E-31 210.6 18.8 159 61-235 2-174 (175)
91 cd01863 Rab18 Rab18 subfamily. 99.9 1.5E-26 3.3E-31 206.5 18.4 158 61-234 1-160 (161)
92 cd04139 RalA_RalB RalA/RalB su 99.9 2.3E-26 5E-31 205.0 18.6 160 61-236 1-162 (164)
93 cd04123 Rab21 Rab21 subfamily. 99.9 2.3E-26 4.9E-31 204.4 18.4 160 61-235 1-161 (162)
94 cd04129 Rho2 Rho2 subfamily. 99.9 2.5E-26 5.5E-31 211.8 19.1 163 61-239 2-176 (187)
95 cd04114 Rab30 Rab30 subfamily. 99.9 4.2E-26 9E-31 205.3 19.1 163 58-235 5-168 (169)
96 cd04147 Ras_dva Ras-dva subfam 99.9 3.2E-26 7E-31 213.1 17.4 159 62-236 1-163 (198)
97 cd00157 Rho Rho (Ras homology) 99.9 1.2E-25 2.7E-30 202.1 17.6 157 61-233 1-170 (171)
98 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-25 3.6E-30 201.9 16.9 160 61-237 1-165 (166)
99 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.6E-26 5.6E-31 207.4 11.5 152 63-233 2-163 (164)
100 cd00876 Ras Ras family. The R 99.9 2.2E-25 4.7E-30 197.6 16.7 157 62-234 1-159 (160)
101 cd00154 Rab Rab family. Rab G 99.9 2.6E-25 5.5E-30 195.6 16.8 157 61-232 1-158 (159)
102 cd04137 RheB Rheb (Ras Homolog 99.9 5.6E-25 1.2E-29 200.5 18.4 163 61-239 2-166 (180)
103 cd04149 Arf6 Arf6 subfamily. 99.9 1.9E-25 4.1E-30 202.7 14.7 152 60-233 9-167 (168)
104 PTZ00132 GTP-binding nuclear p 99.9 1.6E-24 3.4E-29 204.2 21.2 168 56-240 5-172 (215)
105 KOG4252|consensus 99.9 3.8E-27 8.3E-32 209.1 3.0 181 46-241 6-186 (246)
106 cd04158 ARD1 ARD1 subfamily. 99.9 3.6E-25 7.8E-30 200.6 15.8 156 62-239 1-164 (169)
107 cd04102 RabL3 RabL3 (Rab-like3 99.9 6.4E-25 1.4E-29 205.5 17.6 147 61-222 1-176 (202)
108 PRK15494 era GTPase Era; Provi 99.9 4E-25 8.7E-30 222.5 16.9 200 58-318 50-260 (339)
109 PLN00223 ADP-ribosylation fact 99.9 6.3E-25 1.4E-29 201.9 16.0 157 59-237 16-179 (181)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.8E-25 6.1E-30 199.5 12.8 151 61-233 1-158 (159)
111 smart00177 ARF ARF-like small 99.9 4.9E-25 1.1E-29 201.1 13.9 154 60-235 13-173 (175)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.6E-24 3.5E-29 199.1 16.5 166 60-243 3-177 (183)
113 TIGR00436 era GTP-binding prot 99.9 5.2E-25 1.1E-29 215.1 13.9 197 62-317 2-207 (270)
114 cd04154 Arl2 Arl2 subfamily. 99.9 1.9E-24 4.1E-29 196.3 15.7 154 58-233 12-172 (173)
115 PTZ00133 ADP-ribosylation fact 99.9 2.3E-24 5E-29 198.2 16.0 158 60-239 17-181 (182)
116 cd04157 Arl6 Arl6 subfamily. 99.9 2E-24 4.3E-29 192.5 11.7 152 62-233 1-161 (162)
117 PTZ00099 rab6; Provisional 99.9 1.4E-23 3E-28 192.4 17.3 137 97-238 7-144 (176)
118 COG1159 Era GTPase [General fu 99.9 3.9E-24 8.4E-29 205.9 12.3 202 60-318 6-216 (298)
119 PLN00023 GTP-binding protein; 99.9 2.9E-23 6.2E-28 204.8 17.0 141 56-211 17-189 (334)
120 cd04161 Arl2l1_Arl13_like Arl2 99.9 2E-23 4.3E-28 189.0 12.8 152 62-233 1-166 (167)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.8E-23 6E-28 185.2 13.3 151 62-233 1-159 (160)
122 cd00879 Sar1 Sar1 subfamily. 99.9 6.7E-23 1.5E-27 188.6 15.7 154 59-234 18-189 (190)
123 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 9.1E-23 2E-27 185.8 16.0 152 60-233 15-173 (174)
124 cd04151 Arl1 Arl1 subfamily. 99.9 3.9E-23 8.5E-28 184.6 12.5 150 62-233 1-157 (158)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1E-22 2.3E-27 182.7 14.5 157 62-233 1-166 (167)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 8.5E-23 1.8E-27 181.9 13.5 150 62-233 1-157 (158)
127 PRK03003 GTP-binding protein D 99.9 6E-22 1.3E-26 207.9 19.5 211 59-307 210-434 (472)
128 PRK00089 era GTPase Era; Revie 99.9 2.3E-22 5E-27 198.3 14.0 199 61-317 6-214 (292)
129 cd01890 LepA LepA subfamily. 99.9 9.8E-22 2.1E-26 178.6 15.8 165 62-235 2-176 (179)
130 smart00178 SAR Sar1p-like memb 99.9 9.3E-22 2E-26 181.0 15.7 154 59-234 16-183 (184)
131 cd01897 NOG NOG1 is a nucleola 99.9 1.4E-21 3E-26 175.6 15.9 155 62-235 2-167 (168)
132 cd04159 Arl10_like Arl10-like 99.9 9.4E-22 2E-26 173.1 13.3 150 63-233 2-158 (159)
133 TIGR03594 GTPase_EngA ribosome 99.9 6.4E-21 1.4E-25 197.7 20.6 220 58-316 170-405 (429)
134 COG1100 GTPase SAR1 and relate 99.9 6.5E-21 1.4E-25 179.1 17.2 164 61-239 6-188 (219)
135 TIGR02528 EutP ethanolamine ut 99.9 1.7E-21 3.6E-26 170.8 11.6 134 62-232 2-141 (142)
136 PF00025 Arf: ADP-ribosylation 99.9 1E-20 2.2E-25 173.1 17.2 156 58-235 12-175 (175)
137 cd01898 Obg Obg subfamily. Th 99.9 7.2E-21 1.6E-25 171.1 14.9 156 62-234 2-169 (170)
138 TIGR00231 small_GTP small GTP- 99.9 2.7E-20 5.8E-25 162.6 17.3 155 61-231 2-159 (161)
139 cd04155 Arl3 Arl3 subfamily. 99.9 9.5E-21 2.1E-25 171.1 14.6 151 58-233 12-172 (173)
140 COG1160 Predicted GTPases [Gen 99.8 5.9E-20 1.3E-24 186.0 19.8 253 20-316 144-412 (444)
141 cd04171 SelB SelB subfamily. 99.8 5.7E-20 1.2E-24 163.6 15.1 157 62-233 2-163 (164)
142 cd01878 HflX HflX subfamily. 99.8 5.3E-20 1.1E-24 171.6 14.2 156 57-234 38-203 (204)
143 KOG0073|consensus 99.8 1.3E-19 2.7E-24 159.5 15.6 160 56-237 12-179 (185)
144 PRK12299 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.9E-24 181.8 17.9 160 61-237 159-329 (335)
145 KOG1707|consensus 99.8 1.2E-20 2.6E-25 194.0 9.0 247 59-350 8-265 (625)
146 PRK04213 GTP-binding protein; 99.8 6.2E-20 1.4E-24 170.6 12.3 150 58-236 7-192 (201)
147 cd01879 FeoB Ferrous iron tran 99.8 2.9E-19 6.3E-24 158.3 15.7 148 65-235 1-156 (158)
148 PRK00093 GTP-binding protein D 99.8 7.8E-19 1.7E-23 182.5 19.9 219 58-316 171-405 (435)
149 TIGR03156 GTP_HflX GTP-binding 99.8 4.6E-19 9.9E-24 179.2 15.1 154 58-234 187-350 (351)
150 cd00882 Ras_like_GTPase Ras-li 99.8 1E-18 2.3E-23 150.3 15.1 153 65-232 1-156 (157)
151 cd01891 TypA_BipA TypA (tyrosi 99.8 3.3E-19 7.1E-24 165.3 12.8 158 62-227 4-173 (194)
152 PRK09518 bifunctional cytidyla 99.8 2.3E-18 5E-23 189.1 21.3 243 20-307 415-673 (712)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.7E-19 2.1E-23 156.7 14.9 156 62-235 2-165 (168)
154 KOG1673|consensus 99.8 2.9E-19 6.2E-24 155.8 10.9 167 57-238 17-188 (205)
155 KOG0096|consensus 99.8 1.5E-19 3.3E-24 162.5 9.0 171 58-245 8-178 (216)
156 PRK12298 obgE GTPase CgtA; Rev 99.8 9.8E-19 2.1E-23 178.9 16.1 189 62-305 161-364 (390)
157 PRK15467 ethanolamine utilizat 99.8 9.2E-19 2E-23 157.5 13.9 141 62-239 3-150 (158)
158 KOG3883|consensus 99.8 2.6E-18 5.7E-23 149.5 15.3 170 59-242 8-181 (198)
159 TIGR02729 Obg_CgtA Obg family 99.8 2.8E-18 6.1E-23 172.0 16.6 157 61-235 158-328 (329)
160 cd01881 Obg_like The Obg-like 99.8 1.3E-18 2.9E-23 156.8 12.8 154 65-234 1-175 (176)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.4E-18 7.4E-23 177.6 17.2 155 57-238 200-362 (442)
162 PF08477 Miro: Miro-like prote 99.8 8.9E-19 1.9E-23 148.8 10.6 116 62-190 1-119 (119)
163 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.4E-18 1.6E-22 148.5 16.6 147 61-235 2-156 (157)
164 KOG0070|consensus 99.8 1.5E-18 3.2E-23 156.3 12.1 158 58-237 15-179 (181)
165 PRK05291 trmE tRNA modificatio 99.8 3.1E-18 6.8E-23 178.6 15.1 150 59-237 214-371 (449)
166 PRK11058 GTPase HflX; Provisio 99.8 7.6E-18 1.6E-22 174.2 17.3 158 60-238 197-364 (426)
167 cd01894 EngA1 EngA1 subfamily. 99.8 9.7E-18 2.1E-22 148.0 14.8 147 64-234 1-156 (157)
168 KOG0075|consensus 99.8 1.4E-18 3E-23 150.2 8.4 155 60-235 20-181 (186)
169 cd00881 GTP_translation_factor 99.8 7.5E-18 1.6E-22 153.5 13.0 163 62-235 1-186 (189)
170 TIGR01393 lepA GTP-binding pro 99.8 2.1E-17 4.6E-22 177.4 17.7 166 60-235 3-179 (595)
171 cd01889 SelB_euk SelB subfamil 99.7 1.1E-17 2.5E-22 154.7 13.0 165 61-236 1-186 (192)
172 PRK03003 GTP-binding protein D 99.7 2.2E-17 4.7E-22 173.5 16.4 156 59-237 37-200 (472)
173 cd01895 EngA2 EngA2 subfamily. 99.7 8.8E-17 1.9E-21 143.6 17.2 156 60-234 2-173 (174)
174 KOG4423|consensus 99.7 1.8E-19 3.9E-24 161.4 -0.6 168 57-239 22-197 (229)
175 PRK12297 obgE GTPase CgtA; Rev 99.7 2.2E-16 4.7E-21 162.7 19.5 156 62-238 160-329 (424)
176 PRK00454 engB GTP-binding prot 99.7 1.1E-16 2.3E-21 147.6 15.4 159 57-236 21-194 (196)
177 PF02421 FeoB_N: Ferrous iron 99.7 6.1E-17 1.3E-21 145.0 12.4 148 61-231 1-156 (156)
178 cd04163 Era Era subfamily. Er 99.7 2.3E-16 5E-21 139.5 15.7 156 60-234 3-167 (168)
179 PRK12296 obgE GTPase CgtA; Rev 99.7 2.6E-16 5.6E-21 164.3 17.0 161 60-239 159-343 (500)
180 TIGR03598 GTPase_YsxC ribosome 99.7 2.6E-16 5.6E-21 144.0 13.5 147 58-225 16-179 (179)
181 PRK00093 GTP-binding protein D 99.7 4E-16 8.6E-21 162.3 16.5 148 61-234 2-160 (435)
182 KOG1423|consensus 99.7 9.9E-17 2.1E-21 154.3 10.6 206 55-316 67-313 (379)
183 TIGR00487 IF-2 translation ini 99.7 6.2E-16 1.4E-20 165.5 17.4 153 59-233 86-247 (587)
184 TIGR00437 feoB ferrous iron tr 99.7 3.2E-16 7E-21 168.3 15.3 146 67-235 1-154 (591)
185 cd01888 eIF2_gamma eIF2-gamma 99.7 5.7E-16 1.2E-20 145.0 14.0 111 124-235 83-198 (203)
186 cd00880 Era_like Era (E. coli 99.7 6.8E-16 1.5E-20 134.6 13.6 152 65-234 1-162 (163)
187 PRK05433 GTP-binding protein L 99.7 8.5E-16 1.8E-20 165.3 17.1 168 59-236 6-184 (600)
188 TIGR03594 GTPase_EngA ribosome 99.7 1E-15 2.2E-20 158.8 16.6 152 62-237 1-161 (429)
189 KOG0076|consensus 99.7 1.1E-16 2.4E-21 142.3 6.5 165 60-238 17-189 (197)
190 CHL00189 infB translation init 99.7 1.5E-15 3.2E-20 165.3 16.6 158 59-235 243-409 (742)
191 KOG0071|consensus 99.7 1.4E-15 3E-20 130.7 13.0 154 60-235 17-177 (180)
192 cd01896 DRG The developmentall 99.7 3.3E-15 7.1E-20 143.0 16.6 150 62-235 2-225 (233)
193 TIGR00475 selB selenocysteine- 99.7 1.6E-15 3.4E-20 162.9 15.9 160 61-237 1-167 (581)
194 PRK09554 feoB ferrous iron tra 99.6 4.1E-15 8.9E-20 163.6 17.5 153 60-235 3-167 (772)
195 KOG0074|consensus 99.6 1E-15 2.2E-20 131.7 9.8 156 58-234 15-177 (185)
196 PRK09518 bifunctional cytidyla 99.6 3.9E-15 8.4E-20 163.7 17.0 157 57-237 272-437 (712)
197 cd04105 SR_beta Signal recogni 99.6 1.3E-15 2.8E-20 142.7 11.4 116 62-193 2-123 (203)
198 PRK12317 elongation factor 1-a 99.6 2.9E-15 6.3E-20 155.5 14.9 169 58-229 4-198 (425)
199 TIGR00483 EF-1_alpha translati 99.6 4E-15 8.7E-20 154.5 14.4 169 58-229 5-200 (426)
200 PRK05306 infB translation init 99.6 8.4E-15 1.8E-19 160.7 17.4 153 59-234 289-450 (787)
201 cd01876 YihA_EngB The YihA (En 99.6 4.1E-15 8.9E-20 131.9 12.2 150 62-234 1-169 (170)
202 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.4E-15 7.5E-20 140.2 12.2 162 62-227 1-185 (208)
203 COG0486 ThdF Predicted GTPase 99.6 1.3E-14 2.9E-19 147.6 16.5 156 58-238 215-378 (454)
204 TIGR00491 aIF-2 translation in 99.6 5.1E-15 1.1E-19 158.4 13.3 162 62-235 6-215 (590)
205 PF00009 GTP_EFTU: Elongation 99.6 6.3E-15 1.4E-19 136.0 11.9 167 59-235 2-186 (188)
206 KOG0072|consensus 99.6 1.7E-15 3.8E-20 130.7 6.3 158 58-237 16-180 (182)
207 cd04167 Snu114p Snu114p subfam 99.6 1.6E-14 3.5E-19 136.0 12.9 123 62-192 2-136 (213)
208 COG2229 Predicted GTPase [Gene 99.6 7.2E-14 1.6E-18 126.0 15.5 166 59-234 9-176 (187)
209 TIGR01394 TypA_BipA GTP-bindin 99.6 3.9E-14 8.4E-19 152.1 14.3 169 62-235 3-190 (594)
210 TIGR03680 eif2g_arch translati 99.5 4E-14 8.6E-19 146.2 12.5 112 123-235 79-195 (406)
211 PF10662 PduV-EutP: Ethanolami 99.5 8.2E-14 1.8E-18 122.5 12.5 135 62-232 3-142 (143)
212 PRK04000 translation initiatio 99.5 6.4E-14 1.4E-18 144.8 13.1 174 57-235 6-200 (411)
213 COG1160 Predicted GTPases [Gen 99.5 1.5E-13 3.3E-18 139.6 15.5 151 61-235 4-164 (444)
214 PRK10218 GTP-binding protein; 99.5 1.9E-13 4E-18 146.9 16.6 169 59-235 4-194 (607)
215 COG2262 HflX GTPases [General 99.5 3.1E-13 6.6E-18 135.6 16.3 199 22-242 145-362 (411)
216 cd01884 EF_Tu EF-Tu subfamily. 99.5 3.3E-13 7.2E-18 125.7 15.6 155 60-224 2-171 (195)
217 cd03742 SOCS_Rab40 SOCS (suppr 99.5 5.9E-15 1.3E-19 101.8 2.2 41 316-356 3-43 (43)
218 cd04168 TetM_like Tet(M)-like 99.5 4.1E-13 8.9E-18 128.9 15.8 126 62-192 1-129 (237)
219 PRK04004 translation initiatio 99.5 2.2E-13 4.7E-18 146.3 14.2 160 61-235 7-217 (586)
220 PRK10512 selenocysteinyl-tRNA- 99.5 3.4E-13 7.3E-18 145.5 15.4 158 62-235 2-165 (614)
221 cd01883 EF1_alpha Eukaryotic e 99.5 1.8E-13 3.8E-18 129.7 10.5 161 62-225 1-194 (219)
222 cd04104 p47_IIGP_like p47 (47- 99.5 8.7E-13 1.9E-17 122.9 14.4 159 60-237 1-185 (197)
223 cd01850 CDC_Septin CDC/Septin. 99.5 5.3E-13 1.1E-17 130.9 13.4 152 59-219 3-185 (276)
224 PRK12735 elongation factor Tu; 99.5 1E-12 2.2E-17 135.3 15.2 168 57-234 9-201 (396)
225 TIGR00485 EF-Tu translation el 99.4 1.2E-12 2.6E-17 134.7 15.1 155 58-222 10-179 (394)
226 cd01885 EF2 EF2 (for archaea a 99.4 1.8E-12 4E-17 123.1 13.0 139 62-203 2-150 (222)
227 PRK12736 elongation factor Tu; 99.4 2.9E-12 6.4E-17 131.8 15.1 168 58-235 10-200 (394)
228 PRK09602 translation-associate 99.4 3.4E-12 7.4E-17 131.0 15.1 71 179-267 217-288 (396)
229 KOG1489|consensus 99.4 2.2E-12 4.7E-17 125.2 12.8 152 62-233 198-364 (366)
230 cd04165 GTPBP1_like GTPBP1-lik 99.4 4.9E-12 1.1E-16 120.4 14.4 107 124-233 84-220 (224)
231 cd04169 RF3 RF3 subfamily. Pe 99.4 6E-12 1.3E-16 122.9 14.7 127 62-193 4-137 (267)
232 COG1084 Predicted GTPase [Gene 99.4 3E-12 6.4E-17 125.1 12.4 188 27-237 134-337 (346)
233 cd01899 Ygr210 Ygr210 subfamil 99.4 1.2E-11 2.5E-16 123.5 16.1 52 180-235 215-268 (318)
234 PRK05124 cysN sulfate adenylyl 99.4 4.4E-12 9.4E-17 133.3 13.1 167 58-228 25-217 (474)
235 COG1163 DRG Predicted GTPase [ 99.4 1.7E-11 3.7E-16 119.5 16.1 194 59-281 62-340 (365)
236 TIGR02034 CysN sulfate adenyly 99.4 6.7E-12 1.4E-16 129.7 13.2 162 61-226 1-187 (406)
237 COG0370 FeoB Fe2+ transport sy 99.3 8.3E-12 1.8E-16 132.3 13.4 157 60-239 3-167 (653)
238 COG0218 Predicted GTPase [Gene 99.3 3E-11 6.6E-16 111.2 15.1 157 58-236 22-197 (200)
239 PRK13351 elongation factor G; 99.3 1.1E-11 2.4E-16 136.2 14.4 130 59-193 7-139 (687)
240 CHL00071 tufA elongation facto 99.3 1.7E-11 3.7E-16 126.7 14.5 157 58-224 10-181 (409)
241 cd01886 EF-G Elongation factor 99.3 2E-11 4.4E-16 119.3 13.5 155 62-221 1-160 (270)
242 TIGR00157 ribosome small subun 99.3 7.5E-12 1.6E-16 120.7 10.2 96 135-233 24-120 (245)
243 PLN00043 elongation factor 1-a 99.3 2.5E-11 5.4E-16 126.7 14.8 159 58-226 5-203 (447)
244 PRK00741 prfC peptide chain re 99.3 3.1E-11 6.7E-16 128.2 15.1 130 58-192 8-144 (526)
245 smart00010 small_GTPase Small 99.3 5.2E-12 1.1E-16 107.2 7.5 113 61-225 1-115 (124)
246 KOG1191|consensus 99.3 1.2E-11 2.6E-16 126.2 11.1 166 58-240 266-454 (531)
247 cd04170 EF-G_bact Elongation f 99.3 9.2E-12 2E-16 121.5 9.9 166 62-235 1-172 (268)
248 PRK05506 bifunctional sulfate 99.3 2.3E-11 4.9E-16 132.4 14.0 164 59-226 23-211 (632)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.1E-11 6.7E-16 115.1 12.9 159 62-236 1-176 (232)
250 KOG0077|consensus 99.3 6.1E-12 1.3E-16 111.4 6.7 154 59-234 19-191 (193)
251 COG0536 Obg Predicted GTPase [ 99.3 4.9E-11 1.1E-15 117.1 13.4 160 63-239 162-336 (369)
252 PLN03126 Elongation factor Tu; 99.3 2.9E-11 6.3E-16 126.9 12.7 159 56-224 77-250 (478)
253 TIGR00503 prfC peptide chain r 99.2 8.4E-11 1.8E-15 124.9 14.8 130 58-192 9-145 (527)
254 PLN03127 Elongation factor Tu; 99.2 1.7E-10 3.6E-15 120.4 16.3 168 58-235 59-251 (447)
255 PRK00049 elongation factor Tu; 99.2 1.6E-10 3.5E-15 119.1 15.8 166 58-233 10-200 (396)
256 PF01926 MMR_HSR1: 50S ribosom 99.2 1.8E-10 3.9E-15 97.7 13.1 106 62-188 1-116 (116)
257 TIGR00484 EF-G translation elo 99.2 1.3E-10 2.9E-15 127.6 15.1 158 57-221 7-171 (689)
258 PRK09866 hypothetical protein; 99.2 3.6E-10 7.7E-15 119.8 17.1 109 124-233 230-350 (741)
259 COG0532 InfB Translation initi 99.2 3.3E-10 7.2E-15 117.3 14.4 154 62-237 7-171 (509)
260 KOG0462|consensus 99.2 1.7E-10 3.7E-15 118.8 12.0 170 58-235 58-234 (650)
261 PRK12739 elongation factor G; 99.2 5.2E-10 1.1E-14 123.0 16.7 131 58-193 6-139 (691)
262 COG3596 Predicted GTPase [Gene 99.2 1.6E-10 3.5E-15 110.8 10.9 163 57-236 36-222 (296)
263 PTZ00141 elongation factor 1- 99.2 3.4E-10 7.4E-15 118.2 13.7 165 58-226 5-203 (446)
264 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 2.2E-09 4.8E-14 99.7 16.7 160 61-237 1-185 (196)
265 PRK12740 elongation factor G; 99.1 5.1E-10 1.1E-14 122.7 13.6 122 66-192 1-125 (668)
266 PTZ00327 eukaryotic translatio 99.1 8.5E-10 1.9E-14 115.3 13.1 111 124-235 117-232 (460)
267 PRK13768 GTPase; Provisional 99.1 5.1E-10 1.1E-14 108.5 10.6 109 125-235 98-246 (253)
268 PF09439 SRPRB: Signal recogni 99.1 2.5E-10 5.4E-15 104.7 7.0 113 62-193 5-126 (181)
269 PRK14845 translation initiatio 99.1 1.1E-09 2.4E-14 123.2 13.2 104 126-235 528-672 (1049)
270 COG4917 EutP Ethanolamine util 99.0 5.5E-10 1.2E-14 94.8 7.2 137 62-234 3-144 (148)
271 COG0481 LepA Membrane GTPase L 99.0 1.7E-09 3.7E-14 110.0 12.0 163 61-235 10-185 (603)
272 PRK00007 elongation factor G; 99.0 3.9E-09 8.5E-14 116.1 14.7 157 58-221 8-171 (693)
273 TIGR00101 ureG urease accessor 99.0 1.7E-09 3.7E-14 101.1 9.7 103 124-236 92-196 (199)
274 KOG1145|consensus 99.0 1.3E-08 2.8E-13 105.2 16.0 152 61-235 154-315 (683)
275 KOG1490|consensus 99.0 3.2E-10 7E-15 115.8 4.4 206 13-238 120-343 (620)
276 COG5256 TEF1 Translation elong 99.0 3.8E-09 8.2E-14 106.4 11.8 162 58-227 5-202 (428)
277 TIGR00490 aEF-2 translation el 99.0 1.6E-09 3.4E-14 119.6 10.0 132 58-192 17-151 (720)
278 KOG3905|consensus 99.0 9.6E-09 2.1E-13 100.2 13.9 159 61-237 53-291 (473)
279 KOG0090|consensus 99.0 3.3E-09 7.1E-14 98.1 9.5 152 62-234 40-237 (238)
280 KOG1707|consensus 98.9 1.5E-08 3.3E-13 105.5 14.9 167 54-239 419-586 (625)
281 TIGR00073 hypB hydrogenase acc 98.9 1.4E-08 3.1E-13 95.2 12.1 101 124-234 103-205 (207)
282 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.3E-08 5E-13 98.8 13.6 166 58-240 36-248 (313)
283 PTZ00258 GTP-binding protein; 98.9 2.9E-08 6.2E-13 101.5 13.5 86 58-158 19-126 (390)
284 cd01853 Toc34_like Toc34-like 98.8 5.5E-08 1.2E-12 94.1 13.8 122 55-193 26-163 (249)
285 PF05783 DLIC: Dynein light in 98.8 5.1E-08 1.1E-12 101.9 14.2 160 61-238 26-266 (472)
286 cd01855 YqeH YqeH. YqeH is an 98.8 1.9E-08 4.2E-13 92.8 9.8 94 137-236 24-125 (190)
287 KOG1532|consensus 98.8 2E-08 4.3E-13 96.1 9.2 179 57-238 16-266 (366)
288 PRK07560 elongation factor EF- 98.8 4.5E-08 9.8E-13 108.4 13.2 132 58-192 18-152 (731)
289 cd01882 BMS1 Bms1. Bms1 is an 98.8 6.8E-08 1.5E-12 92.0 12.6 140 58-223 37-183 (225)
290 KOG0705|consensus 98.8 2.5E-08 5.5E-13 102.8 9.3 160 59-240 29-193 (749)
291 PLN00116 translation elongatio 98.7 3.7E-08 8E-13 110.5 10.2 133 57-192 16-163 (843)
292 TIGR02836 spore_IV_A stage IV 98.7 1.9E-07 4.1E-12 94.9 14.1 169 59-231 16-232 (492)
293 PTZ00416 elongation factor 2; 98.7 5E-08 1.1E-12 109.4 10.6 132 58-192 17-157 (836)
294 COG2895 CysN GTPases - Sulfate 98.7 1.5E-07 3.2E-12 93.1 11.8 164 58-225 4-192 (431)
295 PF04548 AIG1: AIG1 family; I 98.7 4.2E-07 9.1E-12 85.8 14.6 161 61-238 1-188 (212)
296 PRK09601 GTP-binding protein Y 98.7 3.2E-07 6.9E-12 92.9 14.5 83 61-158 3-107 (364)
297 PF03029 ATP_bind_1: Conserved 98.7 1.6E-08 3.6E-13 97.1 5.0 111 125-235 92-236 (238)
298 PRK09435 membrane ATPase/prote 98.7 1.1E-07 2.3E-12 95.5 10.8 104 123-236 148-260 (332)
299 COG1217 TypA Predicted membran 98.7 2.8E-07 6E-12 94.0 13.4 170 61-236 6-195 (603)
300 cd03735 SOCS_SOCS1 SOCS (suppr 98.7 1.3E-08 2.8E-13 70.7 2.3 39 316-354 3-41 (43)
301 TIGR00750 lao LAO/AO transport 98.7 2.1E-07 4.6E-12 92.4 12.0 103 123-235 126-237 (300)
302 cd03739 SOCS_SOCS5 SOCS (suppr 98.6 1.4E-08 3E-13 74.3 2.4 40 317-356 4-43 (57)
303 PRK12289 GTPase RsgA; Reviewed 98.6 1.1E-07 2.3E-12 96.4 9.6 159 139-317 81-253 (352)
304 KOG3886|consensus 98.6 3.1E-08 6.7E-13 92.7 5.0 144 61-219 5-162 (295)
305 cd01859 MJ1464 MJ1464. This f 98.6 1.2E-07 2.5E-12 84.7 8.4 94 138-236 3-96 (156)
306 cd03738 SOCS_SOCS4 SOCS (suppr 98.6 2.3E-08 4.9E-13 73.0 2.5 40 317-356 4-43 (56)
307 PRK00098 GTPase RsgA; Reviewed 98.6 1.6E-07 3.4E-12 93.3 9.3 86 144-232 77-163 (298)
308 TIGR03597 GTPase_YqeH ribosome 98.6 1.6E-07 3.4E-12 95.7 9.2 95 134-234 50-151 (360)
309 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2E-07 4.3E-12 92.1 9.6 88 142-233 73-161 (287)
310 KOG0458|consensus 98.6 6.4E-07 1.4E-11 93.6 13.1 164 56-227 173-373 (603)
311 PF05049 IIGP: Interferon-indu 98.6 5.1E-07 1.1E-11 91.6 12.1 162 58-238 33-220 (376)
312 cd00066 G-alpha G protein alph 98.6 6.3E-07 1.4E-11 89.8 12.6 126 112-239 151-314 (317)
313 cd01900 YchF YchF subfamily. 98.5 4.9E-07 1.1E-11 88.6 10.2 81 63-158 1-103 (274)
314 KOG1486|consensus 98.5 1.7E-06 3.6E-11 82.2 13.1 153 60-236 62-288 (364)
315 smart00275 G_alpha G protein a 98.5 2.2E-06 4.7E-11 86.8 14.5 127 111-239 173-337 (342)
316 KOG0461|consensus 98.5 2.1E-06 4.5E-11 84.7 13.3 165 60-239 7-196 (522)
317 PF00350 Dynamin_N: Dynamin fa 98.5 6.8E-07 1.5E-11 80.3 9.3 63 125-189 102-168 (168)
318 TIGR00993 3a0901s04IAP86 chlor 98.5 1.6E-06 3.4E-11 92.8 13.1 122 56-193 114-250 (763)
319 PRK12288 GTPase RsgA; Reviewed 98.5 8.7E-07 1.9E-11 89.7 10.6 88 145-234 118-206 (347)
320 PF00735 Septin: Septin; Inte 98.5 2.4E-06 5.2E-11 84.1 13.3 150 59-216 3-181 (281)
321 cd03740 SOCS_SOCS6 SOCS (suppr 98.5 7.8E-08 1.7E-12 66.4 2.0 38 315-352 2-39 (41)
322 smart00053 DYNc Dynamin, GTPas 98.4 2.7E-06 5.9E-11 81.7 11.9 68 124-193 125-206 (240)
323 KOG0410|consensus 98.4 5.3E-07 1.1E-11 88.3 6.2 160 55-240 173-345 (410)
324 PRK10463 hydrogenase nickel in 98.4 2.4E-06 5.2E-11 84.0 10.7 55 180-234 231-287 (290)
325 cd03717 SOCS_SOCS_like SOCS (s 98.4 1.9E-07 4.2E-12 63.9 2.1 38 315-352 2-39 (39)
326 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.1E-06 4.5E-11 76.9 8.8 90 144-235 5-94 (157)
327 smart00253 SOCS suppressors of 98.3 3.2E-07 7E-12 64.2 2.1 38 315-352 6-43 (43)
328 KOG0082|consensus 98.3 8E-06 1.7E-10 82.0 12.4 116 124-239 195-347 (354)
329 COG0012 Predicted GTPase, prob 98.3 1.4E-05 3E-10 80.4 13.9 96 61-158 3-108 (372)
330 COG5257 GCD11 Translation init 98.3 1.2E-05 2.6E-10 79.0 12.4 174 58-237 8-203 (415)
331 KOG0468|consensus 98.2 7.1E-06 1.5E-10 86.8 10.6 131 57-191 125-261 (971)
332 KOG0084|consensus 98.2 3.8E-07 8.2E-12 83.5 1.1 99 10-141 3-101 (205)
333 COG0480 FusA Translation elong 98.2 5.6E-06 1.2E-10 90.4 10.2 131 58-192 8-141 (697)
334 KOG1144|consensus 98.2 8.6E-06 1.9E-10 87.0 10.4 108 126-239 542-690 (1064)
335 COG3276 SelB Selenocysteine-sp 98.2 1.1E-05 2.5E-10 82.2 10.9 156 63-235 3-161 (447)
336 cd01849 YlqF_related_GTPase Yl 98.2 8.5E-06 1.8E-10 72.8 8.7 84 149-235 1-84 (155)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 6.6E-06 1.4E-10 72.3 7.7 76 143-223 7-84 (141)
338 COG0378 HypB Ni2+-binding GTPa 98.1 5.8E-06 1.3E-10 76.1 6.9 102 124-235 97-200 (202)
339 cd01856 YlqF YlqF. Proteins o 98.1 6.2E-06 1.3E-10 74.9 6.9 90 139-235 11-100 (171)
340 PRK13796 GTPase YqeH; Provisio 98.1 1.8E-05 4E-10 80.8 9.7 92 136-234 58-157 (365)
341 COG5019 CDC3 Septin family pro 98.0 4E-05 8.7E-10 76.7 11.2 150 58-215 21-200 (373)
342 KOG2655|consensus 98.0 7.2E-05 1.6E-09 75.3 12.5 169 55-235 16-213 (366)
343 PF03308 ArgK: ArgK protein; 98.0 1.6E-05 3.4E-10 76.6 7.3 102 124-236 122-230 (266)
344 KOG0086|consensus 97.9 1.8E-06 3.9E-11 75.9 0.0 110 12-155 5-120 (214)
345 cd03736 SOCS_SOCS2 SOCS (suppr 97.9 5.4E-06 1.2E-10 57.3 2.2 37 315-353 2-38 (41)
346 cd03741 SOCS_SOCS7 SOCS (suppr 97.9 5.9E-06 1.3E-10 59.2 2.2 40 315-354 2-41 (49)
347 COG4108 PrfC Peptide chain rel 97.9 8E-05 1.7E-09 75.9 11.1 148 61-216 13-168 (528)
348 KOG1954|consensus 97.9 6.4E-05 1.4E-09 75.1 10.0 133 56-193 54-225 (532)
349 KOG0087|consensus 97.9 5.2E-06 1.1E-10 76.9 2.2 60 11-80 9-68 (222)
350 TIGR03596 GTPase_YlqF ribosome 97.9 5.4E-05 1.2E-09 74.3 9.1 90 141-237 15-104 (276)
351 cd03734 SOCS_CIS1 SOCS (suppre 97.9 8.9E-06 1.9E-10 56.0 2.3 37 315-353 2-38 (41)
352 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 3.4E-05 7.3E-10 67.8 6.2 54 62-134 85-138 (141)
353 KOG2486|consensus 97.8 4.5E-05 9.7E-10 73.7 7.2 155 57-233 133-313 (320)
354 KOG1547|consensus 97.8 0.00027 5.8E-09 67.0 12.0 152 57-218 43-225 (336)
355 cd03746 SOCS_WSB1_SWIP1 SOCS ( 97.8 1.1E-05 2.5E-10 55.3 2.0 36 315-350 2-37 (40)
356 COG1703 ArgK Putative periplas 97.8 0.00017 3.7E-09 70.6 10.7 105 124-238 144-256 (323)
357 KOG0095|consensus 97.8 2.5E-05 5.4E-10 68.5 4.0 55 10-70 1-55 (213)
358 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00013 2.7E-09 72.2 9.2 90 141-237 18-107 (287)
359 PF07525 SOCS_box: SOCS box; 97.7 1.8E-05 3.8E-10 54.5 2.0 35 316-350 1-38 (40)
360 cd01859 MJ1464 MJ1464. This f 97.7 9.8E-05 2.1E-09 65.7 7.4 22 59-80 100-121 (156)
361 KOG0080|consensus 97.7 2.7E-05 5.8E-10 69.3 3.6 51 11-67 6-56 (209)
362 cd03587 SOCS SOCS (suppressors 97.7 1.7E-05 3.6E-10 55.0 1.8 37 315-351 1-40 (41)
363 COG1162 Predicted GTPases [Gen 97.7 0.00019 4E-09 70.7 9.4 136 140-290 72-209 (301)
364 PRK01889 GTPase RsgA; Reviewed 97.7 0.00017 3.7E-09 73.4 9.5 83 145-232 110-193 (356)
365 cd03733 SOCS_WSB_SWIP SOCS (su 97.7 2.1E-05 4.6E-10 53.7 1.9 36 315-350 2-37 (39)
366 TIGR03348 VI_IcmF type VI secr 97.7 0.00024 5.3E-09 82.8 11.4 118 62-193 113-257 (1169)
367 cd01856 YlqF YlqF. Proteins o 97.7 0.00011 2.5E-09 66.6 7.0 23 58-80 113-135 (171)
368 COG0050 TufB GTPases - transla 97.6 0.00046 1E-08 67.3 10.6 153 58-220 10-177 (394)
369 KOG3887|consensus 97.5 0.00047 1E-08 65.5 9.4 159 61-237 28-203 (347)
370 cd03745 SOCS_WSB2_SWIP2 SOCS ( 97.5 5.8E-05 1.3E-09 51.4 2.1 35 316-350 3-37 (39)
371 cd01855 YqeH YqeH. YqeH is an 97.5 0.00016 3.4E-09 66.7 5.7 22 61-82 128-149 (190)
372 cd04178 Nucleostemin_like Nucl 97.5 0.00019 4E-09 65.6 5.9 24 58-81 115-138 (172)
373 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00039 8.4E-09 68.7 8.6 23 58-80 119-141 (287)
374 KOG1487|consensus 97.4 0.0011 2.3E-08 63.7 10.5 147 61-235 60-280 (358)
375 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00026 5.5E-09 63.3 6.1 21 60-80 102-122 (157)
376 TIGR03596 GTPase_YlqF ribosome 97.4 0.00039 8.5E-09 68.3 7.9 22 59-80 117-138 (276)
377 KOG4273|consensus 97.4 0.0012 2.7E-08 62.9 10.1 154 62-235 6-221 (418)
378 COG5258 GTPBP1 GTPase [General 97.4 0.0018 3.8E-08 65.4 11.6 106 126-235 203-337 (527)
379 cd03737 SOCS_SOCS3 SOCS (suppr 97.4 7.6E-05 1.7E-09 51.7 1.4 37 315-353 2-39 (42)
380 KOG0078|consensus 97.4 0.00015 3.2E-09 67.4 3.6 51 12-68 8-58 (207)
381 KOG1143|consensus 97.4 0.0016 3.5E-08 65.3 11.0 103 125-230 250-382 (591)
382 PF00503 G-alpha: G-protein al 97.3 0.0018 3.9E-08 66.7 11.8 121 114-235 227-389 (389)
383 KOG0447|consensus 97.3 0.0046 9.9E-08 64.8 14.1 161 56-218 304-523 (980)
384 KOG0448|consensus 97.3 0.002 4.4E-08 69.1 11.7 67 125-194 207-276 (749)
385 TIGR00092 GTP-binding protein 97.2 0.00093 2E-08 68.0 8.0 84 61-159 3-109 (368)
386 KOG0081|consensus 97.2 8.2E-05 1.8E-09 66.1 -0.1 59 10-74 3-64 (219)
387 COG1618 Predicted nucleotide k 97.2 0.0086 1.9E-07 53.9 12.3 145 59-235 4-175 (179)
388 cd03112 CobW_like The function 97.1 0.0017 3.6E-08 58.4 7.8 64 123-191 86-158 (158)
389 PRK10416 signal recognition pa 97.1 0.002 4.4E-08 64.6 9.0 96 122-228 195-302 (318)
390 cd01849 YlqF_related_GTPase Yl 97.1 0.001 2.2E-08 59.3 6.2 22 59-80 99-120 (155)
391 KOG0466|consensus 97.1 0.00039 8.5E-09 67.9 3.6 107 125-237 126-242 (466)
392 PF03193 DUF258: Protein of un 97.1 0.00052 1.1E-08 62.0 3.8 22 62-83 37-58 (161)
393 TIGR00064 ftsY signal recognit 97.0 0.0048 1E-07 60.5 10.8 97 123-230 154-262 (272)
394 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0018 3.9E-08 48.0 5.8 44 147-190 13-58 (58)
395 COG1161 Predicted GTPases [Gen 97.0 0.00098 2.1E-08 67.0 5.9 21 60-80 132-152 (322)
396 KOG0092|consensus 97.0 0.0015 3.3E-08 60.0 6.5 139 15-191 4-153 (200)
397 PRK12288 GTPase RsgA; Reviewed 97.0 0.001 2.2E-08 67.6 5.9 19 63-81 208-226 (347)
398 PRK12727 flagellar biosynthesi 97.0 0.0053 1.2E-07 65.2 11.5 91 123-224 428-523 (559)
399 cd03727 SOCS_ASB8 SOCS (suppre 97.0 0.0003 6.6E-09 48.8 1.4 33 317-349 4-40 (43)
400 TIGR01425 SRP54_euk signal rec 97.0 0.003 6.5E-08 65.6 9.2 94 123-227 182-281 (429)
401 KOG0463|consensus 97.0 0.0062 1.3E-07 61.3 10.8 102 125-230 220-352 (641)
402 PRK13695 putative NTPase; Prov 97.0 0.0085 1.9E-07 54.4 10.9 79 143-235 92-172 (174)
403 KOG0467|consensus 97.0 0.0024 5.2E-08 69.2 8.1 130 56-190 5-135 (887)
404 cd03718 SOCS_SSB1_4 SOCS (supp 96.9 0.00059 1.3E-08 47.5 2.4 34 317-350 4-40 (42)
405 cd01851 GBP Guanylate-binding 96.9 0.0024 5.2E-08 60.8 7.2 90 59-160 6-104 (224)
406 COG5192 BMS1 GTP-binding prote 96.9 0.0059 1.3E-07 64.2 10.3 138 56-220 65-210 (1077)
407 TIGR00157 ribosome small subun 96.8 0.0022 4.7E-08 62.0 6.2 19 62-80 122-140 (245)
408 PRK12289 GTPase RsgA; Reviewed 96.8 0.0021 4.6E-08 65.3 6.3 19 63-81 175-193 (352)
409 KOG0394|consensus 96.8 0.00036 7.8E-09 63.6 0.5 141 14-191 7-164 (210)
410 cd03722 SOCS_ASB3 SOCS (suppre 96.8 0.00078 1.7E-08 48.8 1.9 36 315-350 2-43 (51)
411 KOG1491|consensus 96.7 0.0034 7.4E-08 62.5 6.7 86 59-159 19-126 (391)
412 PRK14974 cell division protein 96.7 0.0055 1.2E-07 61.9 8.2 96 124-230 223-324 (336)
413 PRK14722 flhF flagellar biosyn 96.7 0.015 3.2E-07 59.6 10.9 96 123-226 215-322 (374)
414 KOG0093|consensus 96.6 0.0017 3.7E-08 57.2 3.5 56 7-68 12-67 (193)
415 KOG0094|consensus 96.6 0.0018 3.8E-08 59.7 3.6 48 14-67 20-67 (221)
416 cd03730 SOCS_ASB14 SOCS (suppr 96.6 0.0013 2.9E-08 48.6 2.2 38 316-353 3-46 (57)
417 cd03725 SOCS_ASB6 SOCS (suppre 96.6 0.0014 3E-08 46.0 2.2 33 317-349 4-40 (44)
418 COG1419 FlhF Flagellar GTP-bin 96.6 0.02 4.4E-07 58.6 11.2 90 123-224 281-377 (407)
419 cd03716 SOCS_ASB_like SOCS (su 96.6 0.0014 3E-08 45.6 1.9 35 316-350 3-40 (42)
420 PRK13796 GTPase YqeH; Provisio 96.5 0.0035 7.7E-08 64.1 5.5 21 61-81 161-181 (365)
421 cd02038 FleN-like FleN is a me 96.5 0.0094 2E-07 52.2 7.4 65 124-191 45-109 (139)
422 cd03723 SOCS_ASB4_ASB18 SOCS ( 96.5 0.0016 3.4E-08 46.6 2.0 34 317-350 4-40 (48)
423 TIGR03597 GTPase_YqeH ribosome 96.5 0.0026 5.7E-08 64.9 4.4 21 61-81 155-175 (360)
424 COG1162 Predicted GTPases [Gen 96.5 0.0037 8.1E-08 61.7 5.2 19 62-80 166-184 (301)
425 cd03115 SRP The signal recogni 96.5 0.02 4.3E-07 51.8 9.4 83 123-214 82-170 (173)
426 PRK14721 flhF flagellar biosyn 96.4 0.029 6.4E-07 58.3 11.5 94 124-228 270-370 (420)
427 KOG0465|consensus 96.4 0.019 4E-07 61.2 9.9 67 122-191 102-168 (721)
428 PRK00771 signal recognition pa 96.4 0.031 6.6E-07 58.5 11.3 91 125-227 177-274 (437)
429 PRK11889 flhF flagellar biosyn 96.3 0.013 2.9E-07 60.2 8.2 92 124-226 321-418 (436)
430 PRK14723 flhF flagellar biosyn 96.3 0.03 6.6E-07 62.0 11.6 106 124-237 264-380 (767)
431 cd03729 SOCS_ASB13 SOCS (suppr 96.3 0.0024 5.2E-08 44.4 1.9 34 317-350 4-40 (42)
432 PF00448 SRP54: SRP54-type pro 96.3 0.0028 6.1E-08 59.2 3.0 92 124-226 84-181 (196)
433 cd01854 YjeQ_engC YjeQ/EngC. 96.3 0.0072 1.6E-07 59.7 5.9 21 61-81 162-182 (287)
434 PRK05703 flhF flagellar biosyn 96.3 0.032 7E-07 58.2 10.9 94 123-227 299-400 (424)
435 cd03726 SOCS_ASB7 SOCS (suppre 96.3 0.0025 5.4E-08 45.0 1.8 34 317-350 4-40 (45)
436 KOG0079|consensus 96.2 0.00093 2E-08 58.8 -0.5 49 12-66 4-52 (198)
437 KOG0085|consensus 96.2 0.0059 1.3E-07 57.8 4.6 118 122-239 197-352 (359)
438 COG3523 IcmF Type VI protein s 96.2 0.0079 1.7E-07 69.2 6.1 118 61-193 126-270 (1188)
439 COG0523 Putative GTPases (G3E 96.2 0.054 1.2E-06 54.5 11.4 98 124-229 85-194 (323)
440 KOG0464|consensus 96.1 0.0022 4.7E-08 65.1 1.2 129 59-192 36-167 (753)
441 PF03266 NTPase_1: NTPase; In 96.1 0.0097 2.1E-07 54.2 5.4 19 62-80 1-19 (168)
442 PRK11537 putative GTP-binding 96.1 0.044 9.6E-07 55.0 10.6 95 124-228 91-196 (318)
443 cd03110 Fer4_NifH_child This p 96.1 0.04 8.7E-07 50.0 9.5 86 122-215 91-176 (179)
444 PF09547 Spore_IV_A: Stage IV 96.1 0.12 2.6E-06 53.4 13.4 173 60-237 17-235 (492)
445 cd03114 ArgK-like The function 96.1 0.017 3.7E-07 51.4 6.7 58 123-190 91-148 (148)
446 KOG0098|consensus 96.0 0.0042 9.1E-08 56.9 2.6 48 13-66 3-50 (216)
447 KOG0460|consensus 96.0 0.034 7.3E-07 55.6 9.1 154 57-219 51-218 (449)
448 KOG3859|consensus 96.0 0.014 3E-07 56.8 6.2 145 17-192 14-189 (406)
449 PRK00098 GTPase RsgA; Reviewed 96.0 0.013 2.9E-07 58.2 6.5 19 62-80 166-184 (298)
450 COG3640 CooC CO dehydrogenase 96.0 0.073 1.6E-06 50.8 10.9 63 124-191 134-197 (255)
451 cd04121 Rab40 Rab40 subfamily. 96.0 0.0057 1.2E-07 56.6 3.3 49 12-66 2-50 (189)
452 cd03743 SOCS_SSB4 SOCS (suppre 95.9 0.004 8.7E-08 43.2 1.5 34 317-350 4-40 (42)
453 cd04178 Nucleostemin_like Nucl 95.9 0.023 5.1E-07 51.8 6.9 44 149-193 1-44 (172)
454 PF02492 cobW: CobW/HypB/UreG, 95.8 0.011 2.5E-07 54.0 4.7 81 123-209 84-170 (178)
455 PRK12726 flagellar biosynthesi 95.8 0.018 3.8E-07 59.0 6.4 93 123-226 285-383 (407)
456 PRK06995 flhF flagellar biosyn 95.8 0.051 1.1E-06 57.5 9.8 102 125-237 336-448 (484)
457 PRK12723 flagellar biosynthesi 95.8 0.086 1.9E-06 54.4 11.2 96 123-229 254-357 (388)
458 cd03721 SOCS_ASB2 SOCS (suppre 95.6 0.006 1.3E-07 43.1 1.4 34 317-350 4-40 (45)
459 TIGR00959 ffh signal recogniti 95.6 0.081 1.8E-06 55.2 10.2 94 123-227 182-281 (428)
460 PRK06731 flhF flagellar biosyn 95.5 0.055 1.2E-06 53.1 8.2 93 123-226 154-252 (270)
461 cd02117 NifH_like This family 95.5 0.17 3.7E-06 47.4 11.3 88 123-215 116-207 (212)
462 cd02036 MinD Bacterial cell di 95.4 0.25 5.3E-06 44.3 11.7 84 125-214 64-147 (179)
463 cd01867 Rab8_Rab10_Rab13_like 95.4 0.013 2.9E-07 52.2 3.3 43 14-62 1-43 (167)
464 cd03731 SOCS_ASB15 SOCS (suppr 95.4 0.009 1.9E-07 44.1 1.7 34 317-350 4-43 (56)
465 PRK10867 signal recognition pa 95.4 0.043 9.3E-07 57.4 7.3 93 123-227 183-282 (433)
466 cd04127 Rab27A Rab27a subfamil 95.4 0.014 3E-07 52.6 3.3 48 14-67 2-49 (180)
467 cd04102 RabL3 RabL3 (Rab-like3 95.2 0.0049 1.1E-07 57.8 -0.3 46 17-68 1-46 (202)
468 PLN03110 Rab GTPase; Provision 95.1 0.017 3.7E-07 54.4 3.3 49 12-66 8-56 (216)
469 cd00009 AAA The AAA+ (ATPases 95.1 0.05 1.1E-06 46.0 5.9 19 62-80 21-39 (151)
470 TIGR02475 CobW cobalamin biosy 95.0 0.24 5.3E-06 50.2 11.5 98 124-229 93-223 (341)
471 cd04110 Rab35 Rab35 subfamily. 95.0 0.021 4.5E-07 52.9 3.3 26 13-38 3-28 (199)
472 cd02042 ParA ParA and ParB of 94.8 0.094 2E-06 43.0 6.6 45 124-171 40-84 (104)
473 cd03728 SOCS_ASB_9_11 SOCS (su 94.7 0.016 3.5E-07 40.2 1.4 34 317-350 4-40 (42)
474 KOG2485|consensus 94.7 0.028 6E-07 55.6 3.5 23 58-80 141-163 (335)
475 cd03719 SOCS_SSB2 SOCS (suppre 94.7 0.017 3.7E-07 40.1 1.5 34 317-350 4-40 (42)
476 PF13207 AAA_17: AAA domain; P 94.7 0.021 4.6E-07 48.1 2.4 19 62-80 1-19 (121)
477 cd01892 Miro2 Miro2 subfamily. 94.7 0.026 5.7E-07 50.7 3.2 46 16-67 4-50 (169)
478 cd02032 Bchl_like This family 94.7 0.43 9.3E-06 46.3 11.9 67 123-191 115-184 (267)
479 cd01864 Rab19 Rab19 subfamily. 94.7 0.029 6.2E-07 49.8 3.3 25 14-38 1-25 (165)
480 PF11111 CENP-M: Centromere pr 94.6 1.2 2.7E-05 40.6 13.7 89 147-235 64-152 (176)
481 cd01866 Rab2 Rab2 subfamily. 94.6 0.028 6.1E-07 50.2 3.2 26 13-38 1-26 (168)
482 KOG0099|consensus 94.6 0.071 1.5E-06 51.5 5.9 76 115-192 195-282 (379)
483 PLN00023 GTP-binding protein; 94.6 0.013 2.8E-07 58.8 1.0 49 14-68 19-67 (334)
484 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.18 4E-06 39.7 7.6 77 63-169 2-79 (99)
485 cd03744 SOCS_SSB1 SOCS (suppre 94.6 0.019 4.2E-07 39.8 1.6 34 317-350 4-40 (42)
486 cd04122 Rab14 Rab14 subfamily. 94.6 0.027 5.9E-07 50.1 3.0 24 15-38 1-24 (166)
487 KOG1424|consensus 94.6 0.06 1.3E-06 56.4 5.7 72 43-133 297-368 (562)
488 cd04128 Spg1 Spg1p. Spg1p (se 94.5 0.026 5.7E-07 51.6 2.8 45 17-67 1-45 (182)
489 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 94.4 0.033 7.2E-07 51.1 3.2 40 15-60 4-43 (182)
490 cd03724 SOCS_ASB5 SOCS (suppre 94.4 0.023 5E-07 39.4 1.6 34 317-350 4-40 (42)
491 PRK12724 flagellar biosynthesi 94.4 0.097 2.1E-06 54.4 6.8 92 123-225 299-399 (432)
492 PLN03108 Rab family protein; P 94.4 0.036 7.9E-07 51.9 3.5 49 13-67 3-51 (210)
493 cd04133 Rop_like Rop subfamily 94.4 0.029 6.3E-07 51.2 2.7 39 16-60 1-39 (176)
494 PRK08118 topology modulation p 94.3 0.031 6.7E-07 50.7 2.6 19 62-80 3-21 (167)
495 PF13521 AAA_28: AAA domain; P 94.2 0.028 6.1E-07 50.3 2.2 19 62-80 1-19 (163)
496 COG1161 Predicted GTPases [Gen 94.2 0.083 1.8E-06 53.1 5.9 92 132-229 18-110 (322)
497 cd03720 SOCS_ASB1 SOCS (suppre 94.2 0.025 5.5E-07 39.3 1.4 34 317-350 4-40 (42)
498 cd01868 Rab11_like Rab11-like. 94.1 0.043 9.2E-07 48.5 3.2 25 14-38 1-25 (165)
499 PF13671 AAA_33: AAA domain; P 94.0 0.033 7.1E-07 48.2 2.2 18 63-80 2-19 (143)
500 PRK07261 topology modulation p 94.0 0.037 8E-07 50.3 2.6 19 62-80 2-20 (171)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.5e-39 Score=290.29 Aligned_cols=178 Identities=43% Similarity=0.748 Sum_probs=165.7
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
....++.+||+|+|++|||||+|+.|| .++.+...+..++| +||..+++.++|+.++++||||+|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf----------~~~~f~e~~~sTIG-----VDf~~rt~e~~gk~iKlQIWDTAG 67 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRF----------KDDTFTESYISTIG-----VDFKIRTVELDGKTIKLQIWDTAG 67 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhh----------ccCCcchhhcceee-----eEEEEEEeeecceEEEEEeeeccc
Confidence 456789999999999999999999998 66666777788888 899999999999999999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
||+|+.+...|||+|++||+|||+++.+||+++..|+.+++++. +++|.+|||||+|+.+.+.++.++++.|+.+++++
T Consensus 68 QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 68 QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999988 67899999999999999999999999999999998
Q ss_pred -EEEEcCCCCCCHHHHHHHHHHHHhhhcCCccccc
Q psy3450 213 -FFEVSPLCDFNIRESFTELSRRALQRNGMERLWR 246 (432)
Q Consensus 213 -~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~ 246 (432)
|+|+|||++.||+++|..|+..+.++......+.
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHHhcccCCCCC
Confidence 9999999999999999999999988776554443
No 2
>KOG0078|consensus
Probab=100.00 E-value=1.4e-37 Score=284.28 Aligned_cols=177 Identities=49% Similarity=0.763 Sum_probs=166.9
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.+++.+||+++|+++||||+|+.+| .++.+...+..++| |||..+++.+++..+.+++|||+||+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf----------~d~~f~~~~~sTiG-----IDFk~kti~l~g~~i~lQiWDtaGQe 72 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRF----------SDDSFNTSFISTIG-----IDFKIKTIELDGKKIKLQIWDTAGQE 72 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhh----------hhccCcCCccceEE-----EEEEEEEEEeCCeEEEEEEEEcccch
Confidence 7889999999999999999999998 77777778888888 89999999999999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+|+.+...||++|++++||||+++..||+++..|+..|.++. +++|++|||||+|+.++|+|+.+.++++|.++|+.|+
T Consensus 73 rf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~ 152 (207)
T KOG0078|consen 73 RFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFF 152 (207)
T ss_pred hHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEE
Confidence 999999999999999999999999999999999999999988 4899999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcCCcccccc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNGMERLWRS 247 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~ 247 (432)
|+|||+|.||+|.|..|++.++++....+.+..
T Consensus 153 EtSAk~~~NI~eaF~~La~~i~~k~~~~~~~~~ 185 (207)
T KOG0078|consen 153 ETSAKTNFNIEEAFLSLARDILQKLEDAELEAS 185 (207)
T ss_pred EccccCCCCHHHHHHHHHHHHHhhcchhhhccc
Confidence 999999999999999999999987766655543
No 3
>KOG0098|consensus
Probab=100.00 E-value=6.2e-36 Score=267.03 Aligned_cols=169 Identities=34% Similarity=0.645 Sum_probs=158.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
+++.+|++++|+.|||||+|+.|| .+..+.+.+..++| ++|-.+.+.+++++++|+||||+|||.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf----------~~krF~~~hd~TiG-----vefg~r~~~id~k~IKlqiwDtaGqe~ 67 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRF----------TDKRFQPVHDLTIG-----VEFGARMVTIDGKQIKLQIWDTAGQES 67 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHH----------hccCccccccceee-----eeeceeEEEEcCceEEEEEEecCCcHH
Confidence 568899999999999999999997 44455555667777 799999999999999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
|+++.+.||+++.++|||||+++++||+.+..|+.+++++. ++..++|+|||+||...|+|+.+|+++||++++..|+|
T Consensus 68 frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 68 FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh
Confidence 99999999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+||+++.||+|+|......|++..+
T Consensus 148 TSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 4
>KOG0092|consensus
Probab=100.00 E-value=1.4e-35 Score=266.82 Aligned_cols=170 Identities=33% Similarity=0.562 Sum_probs=154.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|+.+||||||+-|| ..+.+.....+++| -.|.++.+.+++..+++.||||+|||+|.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rf----------vk~~F~e~~e~TIG-----aaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRF----------VKDQFHENIEPTIG-----AAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhh----------hhCccccccccccc-----cEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 4689999999999999999997 55555554556776 58889999999999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++.+.|||+|+++|+|||+++.+||..++.|+.++++.. +++-+.|||||+||.+.|+|..++++.+|+..+..|||+|
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETS 148 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETS 148 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEe
Confidence 999999999999999999999999999999999999877 5677789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 218 PLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
||+|.||+++|..|.+.+........
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred cccccCHHHHHHHHHHhccCcccccc
Confidence 99999999999999999976654433
No 5
>KOG0094|consensus
Probab=100.00 E-value=1.1e-35 Score=267.53 Aligned_cols=167 Identities=29% Similarity=0.529 Sum_probs=156.3
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+|++++|+.+|||||||+|| ..+.+..+|.++|| +||..+++.+.+..+.|++|||+|||+|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf----------~yd~fd~~YqATIG-----iDFlskt~~l~d~~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRF----------MYDKFDNTYQATIG-----IDFLSKTMYLEDRTVRLQLWDTAGQERFR 85 (221)
T ss_pred eEEEEEEEccCccchHHHHHHH----------HHhhhcccccceee-----eEEEEEEEEEcCcEEEEEEEecccHHHHh
Confidence 3489999999999999999998 77777788889998 89999999999999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-C-CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-P-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~-~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
.+.+.|+++++++|+|||++|..||++..+|++.++... . ++-++|||||.||.++|++..++++..|+++++.|+|+
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence 999999999999999999999999999999999999877 3 47788999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~ 240 (432)
||+.|+||+++|..|...+.....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999888866544
No 6
>KOG0080|consensus
Probab=100.00 E-value=3e-35 Score=256.40 Aligned_cols=171 Identities=37% Similarity=0.639 Sum_probs=156.6
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
.+++..+||++||++|||||||+-+| ....+++....++| +||+.+.+.++|+++++-||||+||
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrF----------v~~~fd~~~~~tIG-----vDFkvk~m~vdg~~~KlaiWDTAGq 70 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRF----------VSNTFDDLHPTTIG-----VDFKVKVMQVDGKRLKLAIWDTAGQ 70 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHH----------HhcccCccCCceee-----eeEEEEEEEEcCceEEEEEEeccch
Confidence 45678899999999999999999997 55555554445566 7999999999999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
|+|+.+.+.||++|+++|+|||++.+++|.++..|++++..+. +++-.++||||+|.+.+|.|+.+|+.+||+++++-
T Consensus 71 ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L 150 (209)
T KOG0080|consen 71 ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL 150 (209)
T ss_pred HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE
Confidence 9999999999999999999999999999999999999999887 67788899999999888999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
|+|+|||+..||+..|++|+..|++-..
T Consensus 151 FiE~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred EEEcchhhhccHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999977543
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.5e-34 Score=264.21 Aligned_cols=170 Identities=77% Similarity=1.284 Sum_probs=151.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.++.+||+++|+.|||||||+.+| ..+.+...+.+++| .++....+.+++..+.+++|||+|+++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~----------~~~~~~~~~~~t~~-----~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASL----------QDGSTESPYGYNMG-----IDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHH----------HcCCCCCCCCCcce-----eEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 457799999999999999999998 33333333444443 467778888999999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
|..++..|++++|++|||||+++++||+++..|++++....+++|+||||||.||.+.++++.++++.+++.++++|+||
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999999999998877899999999999998888999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~~ 241 (432)
||++|.||+++|++|++.+..+.+.
T Consensus 148 SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 148 SPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998876553
No 8
>KOG0079|consensus
Probab=100.00 E-value=4.2e-35 Score=252.25 Aligned_cols=170 Identities=39% Similarity=0.710 Sum_probs=159.8
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
.++++.+|.+|+|++|||||+|+.+| .+..+...|+.++| +|+..+++.++|..++|+||||+|+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF----------~ddtFs~sYitTiG-----vDfkirTv~i~G~~VkLqIwDtAGq 67 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRF----------ADDTFSGSYITTIG-----VDFKIRTVDINGDRVKLQIWDTAGQ 67 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHH----------hhcccccceEEEee-----eeEEEEEeecCCcEEEEEEeecccH
Confidence 45678899999999999999999998 55666666777777 8999999999999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
|+|+.+...||++.+++++|||+++.+||.++.+|+++++..++.+|-+|||||.|+.+.+.+..+++.+||.++++.+|
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~F 147 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELF 147 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
|+|||.+.|++.+|.-|.++.++..
T Consensus 148 ETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 148 ETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred ehhhhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999987755
No 9
>KOG0093|consensus
Probab=100.00 E-value=4.9e-34 Score=245.48 Aligned_cols=174 Identities=33% Similarity=0.619 Sum_probs=162.1
Q ss_pred ccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 51 ~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
.+..+..++.+|++++|++.||||||+.++ .+..+++.+-.+.| ++|+.+++.-..+.+++++||
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry----------~ddSFt~afvsTvG-----idFKvKTvyr~~kRiklQiwD 76 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRY----------ADDSFTSAFVSTVG-----IDFKVKTVYRSDKRIKLQIWD 76 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHh----------hccccccceeeeee-----eeEEEeEeeecccEEEEEEEe
Confidence 345667789999999999999999999998 67777777777777 799999999999999999999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhc
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN 209 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~ 209 (432)
|+|+|+|+.+...||++++++||+||++|.+||..++.|.-.|..+. .++|+||||||||+.++|.++.|.+..+++++
T Consensus 77 TagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L 156 (193)
T KOG0093|consen 77 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQL 156 (193)
T ss_pred cccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999887 78999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
|+.|||+|||.+.||+++|+.++..|.+++
T Consensus 157 GfefFEtSaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 157 GFEFFETSAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred ChHHhhhcccccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987654
No 10
>KOG0087|consensus
Probab=100.00 E-value=8.4e-34 Score=258.53 Aligned_cols=175 Identities=38% Similarity=0.655 Sum_probs=160.7
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
..++++.+||+++|+++||||-|+.|| ....+......++| ++|.+..+.++++.++.+||||+|
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRf----------trnEF~~~SksTIG-----vef~t~t~~vd~k~vkaqIWDTAG 72 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRF----------TRNEFSLESKSTIG-----VEFATRTVNVDGKTVKAQIWDTAG 72 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHh----------cccccCccccccee-----EEEEeeceeecCcEEEEeeecccc
Confidence 467899999999999999999999997 44444444556777 799999999999999999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
||+|+.+...||++|.++++|||+++..+|+++.+|+.+++.+. ++++++|||||+||...|.|..++++.+|+..+..
T Consensus 73 QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 73 QERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF 152 (222)
T ss_pred hhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce
Confidence 99999999999999999999999999999999999999999988 78999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
++|+||.++.||++.|+.++..|.+......
T Consensus 153 f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVLTEIYKIVSKKQ 183 (222)
T ss_pred EEEecccccccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987654433
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9.6e-33 Score=254.36 Aligned_cols=164 Identities=23% Similarity=0.391 Sum_probs=143.5
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| . .+.+...+.++++ +.+.+.+.+++..+.++||||+|+++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~-~---------~~~f~~~~~pT~~------~~~~~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVF-A---------KDCFPENYVPTVF------ENYTASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHH-H---------hCCCCCccCCcee------eeeEEEEEECCEEEEEEEEECCCchhh
Confidence 45689999999999999999997 3 3334444555665 444567788999999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~~~ 204 (432)
..+++.+++++|++|+|||+++++||+++ ..|+.++++..++.|++|||||+||.+ ++.++.+++++
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 99999999999999999999999999998 899999998888899999999999964 35699999999
Q ss_pred HHHhcCC-cEEEEcCCCCCC-HHHHHHHHHHHHhh
Q psy3450 205 YAIKNQM-AFFEVSPLCDFN-IRESFTELSRRALQ 237 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~n-I~elf~~L~~~i~~ 237 (432)
+|+++++ +|+||||++|.| |+++|+.+++.++.
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 9999996 999999999998 99999999987643
No 12
>KOG0394|consensus
Probab=100.00 E-value=3.1e-33 Score=249.33 Aligned_cols=169 Identities=33% Similarity=0.608 Sum_probs=151.4
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
...++||+++|++|||||||+|++ +..+| ...+..+|| .+|..+.+.++++.+.++||||+|||+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~y-v~~kF---------~~qykaTIg-----adFltKev~Vd~~~vtlQiWDTAGQER 70 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQY-VNKKF---------SQQYKATIG-----ADFLTKEVQVDDRSVTLQIWDTAGQER 70 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHH-HHHHH---------HHHhccccc-----hhheeeEEEEcCeEEEEEEEecccHHH
Confidence 345799999999999999999997 55544 444566777 699999999999999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCC--CcccCHHHHHHHHHhc
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAF--NRTVTTREAEMYAIKN 209 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~--~r~v~~ee~~~~a~~~ 209 (432)
|.++.-.+||++|++++|||++++.||+.+..|.+++.... ...|.||+|||+|+.. .|+++.+.++.|++..
T Consensus 71 FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 71 FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK 150 (210)
T ss_pred hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987654 2589999999999965 3899999999999876
Q ss_pred C-CcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 210 Q-MAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 210 ~-~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+ ++|||+|||...||++.|+.+++.++....
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 5 799999999999999999999999988664
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.3e-32 Score=250.57 Aligned_cols=161 Identities=28% Similarity=0.467 Sum_probs=141.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||+|+.+| ..+.+...+.+++| +...+.+.+++..++++||||+|+++|..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~----------~~~~f~~~~~~Ti~------~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICY----------TSNKFPTDYIPTVF------DNFSANVSVDGNTVNLGLWDTAGQEDYNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHH----------hcCCCCCCCCCcce------eeeEEEEEECCEEEEEEEEECCCCcccccc
Confidence 69999999999999999997 44444445566665 444566778999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCc----------ccCHHHHHHHHHhc
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNR----------TVTTREAEMYAIKN 209 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r----------~v~~ee~~~~a~~~ 209 (432)
+..+++++|++|||||+++++||+++ ..|+.++....+++|++|||||+||.+++ .++.+++.++++.+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 145 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI 145 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999998 78999998877889999999999996543 48899999999999
Q ss_pred CC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 210 QM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 210 ~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++ .|+||||++|.||+++|+.+++.+.+
T Consensus 146 ~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 146 GAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 98 69999999999999999999998743
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.4e-32 Score=254.70 Aligned_cols=163 Identities=36% Similarity=0.666 Sum_probs=144.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+.|+++|+.|||||||+++| ..+.+...+.+++| +++..+.+.+++..++++||||+|+++|..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~----------~~~~f~~~~~~Ti~-----~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRF----------TDDTFCEACKSGVG-----VDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred CEEEEECcCCCCHHHHHHHH----------HhCCCCCcCCCcce-----eEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 36899999999999999997 33444444445554 4777788899999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhc-CCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-~~~~~evSA 218 (432)
+..|++++|++|+|||+++++||+++..|+..+.+.. +++|++|||||+||.+++++..++++++++++ ++.|+|+||
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999999999999999999999999988765 67999999999999888899999999999885 789999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh
Q psy3450 219 LCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~~~ 238 (432)
++|.||+++|+++++.+.+.
T Consensus 146 ktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 146 KDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 15
>KOG0086|consensus
Probab=100.00 E-value=3.6e-33 Score=241.52 Aligned_cols=176 Identities=38% Similarity=0.656 Sum_probs=160.2
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+.+|+.+|++++|+.|.|||+|+++| +..++....+.++| ++|-.+.+.+.++.++++||||+|
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~F----------ie~kfkDdssHTiG-----veFgSrIinVGgK~vKLQIWDTAG 67 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQF----------IENKFKDDSSHTIG-----VEFGSRIVNVGGKTVKLQIWDTAG 67 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHH----------HHhhhcccccceee-----eeecceeeeecCcEEEEEEeeccc
Confidence 456899999999999999999999997 44444444556666 799999999999999999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
||+|++..+.||++|.+.++|||+++++||+.+..|+..++... +++-+|++|||.||..+|+|+..++..|+++..+.
T Consensus 68 QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~ 147 (214)
T KOG0086|consen 68 QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM 147 (214)
T ss_pred HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee
Confidence 99999999999999999999999999999999999999999877 78999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcCCccc
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNGMERL 244 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~~~~~ 244 (432)
+.|+||++|+||+|.|-..++.|+.+-+..++
T Consensus 148 flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCARTILNKIESGEL 179 (214)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999887654443
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.2e-32 Score=249.08 Aligned_cols=161 Identities=22% Similarity=0.403 Sum_probs=140.4
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| ..+.| ...+.++++ +.+.+.+.+++..+.+++|||+|+++|..
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~-~~~~f---------~~~~~~t~~------~~~~~~~~~~~~~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVF-AKDCY---------PETYVPTVF------ENYTASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHH-HhCcC---------CCCcCCceE------EEEEEEEEECCEEEEEEEEECCCchhhhh
Confidence 379999999999999999997 44444 333445554 44456788899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHHHHHH
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREAEMYA 206 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~~~~a 206 (432)
+++.+++++|++|+|||+++++||+++ ..|+.++++..+++|++|||||+||.+ ++.++.++++++|
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999999999999999999996 899999998888999999999999964 3468999999999
Q ss_pred HhcCC-cEEEEcCCCCCC-HHHHHHHHHHHHh
Q psy3450 207 IKNQM-AFFEVSPLCDFN-IRESFTELSRRAL 236 (432)
Q Consensus 207 ~~~~~-~~~evSAktg~n-I~elf~~L~~~i~ 236 (432)
+++++ +|+||||++|.| |+++|+.+++..+
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 99997 899999999995 9999999999654
No 17
>KOG0095|consensus
Probab=100.00 E-value=1.3e-32 Score=237.23 Aligned_cols=172 Identities=35% Similarity=0.601 Sum_probs=156.7
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+++++.+||+++|..|||||+|+++| ..+-+.+....++| ++|..+++.+++++++++||||+||
T Consensus 2 edykflfkivlvgnagvgktclvrrf----------tqglfppgqgatig-----vdfmiktvev~gekiklqiwdtagq 66 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRF----------TQGLFPPGQGATIG-----VDFMIKTVEVNGEKIKLQIWDTAGQ 66 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhh----------hccCCCCCCCceee-----eeEEEEEEEECCeEEEEEEeeccch
Confidence 46788999999999999999999998 55555555666777 8999999999999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
|+|+++...||+.|+++|+|||++-..||+-+.+|+.+|.++. .++-.|+||||.|+.+.|+++.+.+++|++...+-|
T Consensus 67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999987 456779999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~~ 241 (432)
+|+||+...||+.+|..++-.+....+.
T Consensus 147 letsakea~nve~lf~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRLISEARQ 174 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887665443
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-31 Score=254.33 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=145.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||+|+++| ..+.+...+.++++ +.+...+.+++..+.++||||+|+++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~----------~~~~F~~~y~pTi~------~~~~~~i~~~~~~v~l~iwDTaG~e~ 73 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVL----------AKDCYPETYVPTVF------ENYTAGLETEEQRVELSLWDTSGSPY 73 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHH----------hcCCCCCCcCCcee------eeeEEEEEECCEEEEEEEEeCCCchh
Confidence 356789999999999999999997 33334444556665 33455678899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHHH
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREAE 203 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~~ 203 (432)
|..+++.|++++|++|+|||+++++||+++ ..|+.++.+..+++|+||||||+||.+ .+.++.++++
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~ 153 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC 153 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH
Confidence 999999999999999999999999999985 899999998778899999999999964 3679999999
Q ss_pred HHHHhcCC-cEEEEcCCCCC-CHHHHHHHHHHHHhhh
Q psy3450 204 MYAIKNQM-AFFEVSPLCDF-NIRESFTELSRRALQR 238 (432)
Q Consensus 204 ~~a~~~~~-~~~evSAktg~-nI~elf~~L~~~i~~~ 238 (432)
++|+++++ .|+||||++|. ||+++|+.+++.++++
T Consensus 154 ~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 154 ALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 69999999998 8999999999988764
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=1.4e-31 Score=247.97 Aligned_cols=163 Identities=25% Similarity=0.434 Sum_probs=140.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| . .+.+...+.+++| +.+.+.+.+++..+.++||||+|+++|..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~-~---------~~~f~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICY-T---------TNAFPKEYIPTVF------DNYSAQTAVDGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHH-H---------hCCCCcCCCCceE------eeeEEEEEECCEEEEEEEEECCCchhhhh
Confidence 489999999999999999997 3 3333344556665 44455667899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHH
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYA 206 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a 206 (432)
+++.|++++|++|+|||+++++||+++. .|+.++....+++|++|||||.||.+. +.+..++++.++
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999999999999999999999995 699988877778999999999999654 347788999999
Q ss_pred HhcC-CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 207 IKNQ-MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 207 ~~~~-~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++ ++|+|+||++|.||+++|+++++.+...
T Consensus 147 ~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 147 KQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred HHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 9998 5999999999999999999999988653
No 20
>KOG0091|consensus
Probab=99.98 E-value=3.2e-32 Score=238.13 Aligned_cols=172 Identities=38% Similarity=0.620 Sum_probs=151.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEeCCCCcc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~Dt~G~e~ 136 (432)
.+.+++++||++-||||+|++.| ..++|+ ....|++| +||+.+.+++ +|..++|++|||+|||+
T Consensus 6 ~yqfrlivigdstvgkssll~~f-t~gkfa---------elsdptvg-----vdffarlie~~pg~riklqlwdtagqer 70 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYF-TEGKFA---------ELSDPTVG-----VDFFARLIELRPGYRIKLQLWDTAGQER 70 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHH-hcCccc---------ccCCCccc-----hHHHHHHHhcCCCcEEEEEEeeccchHH
Confidence 46789999999999999999996 445544 44456777 7888887776 57899999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcE-EEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPK-VLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPi-ILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
|+++.+.||+++-++++|||++|.+||+++..|+.+...+. |..++ +|||.|+||..+|+|+.+|++.+|+.+++.|
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceE
Confidence 99999999999999999999999999999999999987655 55554 6999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcCCccc
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNGMERL 244 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~~~~~ 244 (432)
+|+||++|.||+|.|+.|.+.++........
T Consensus 151 VETSak~g~NVeEAF~mlaqeIf~~i~qGei 181 (213)
T KOG0091|consen 151 VETSAKNGCNVEEAFDMLAQEIFQAIQQGEI 181 (213)
T ss_pred EEecccCCCcHHHHHHHHHHHHHHHHhcCce
Confidence 9999999999999999999999887665433
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=4e-31 Score=240.86 Aligned_cols=164 Identities=26% Similarity=0.417 Sum_probs=142.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| ..+.| ...+.++++ +...+.+.+++..+.+++|||+|+++|..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~-~~~~f---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQF-ISHSF---------PDYHDPTIE------DAYKQQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HhCCC---------CCCcCCccc------ceEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 379999999999999999997 33333 333445554 44456678899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++.+|++|+|||++++.||+.+..|+..+.+.. +++|+++||||+|+.++++++.+++..+++.++++|+|||
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 145 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETS 145 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999988887643 5799999999999988888999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc
Q psy3450 218 PLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~ 239 (432)
|++|.||+++|++|++.+.+..
T Consensus 146 a~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 146 AALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887643
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=5.3e-31 Score=237.39 Aligned_cols=163 Identities=35% Similarity=0.659 Sum_probs=142.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| ....| ...+.+++| .++..+.+.+++..+++.+|||+|+++|..
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 66 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQF-TEKKF---------MADCPHTIG-----VEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCcccc-----eeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 589999999999999999997 33333 233333443 356667778899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
++..+++++|++|+|||++++++|+.+..|+..+.... ++.|+++||||+|+..++.+..+++.++++..+++|+|+||
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 99999999999999999999999999999999987765 67899999999999888888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy3450 219 LCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~~ 237 (432)
++|.||+++|+++++.+.+
T Consensus 147 ~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 147 KTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 23
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=6.5e-31 Score=240.21 Aligned_cols=159 Identities=24% Similarity=0.416 Sum_probs=138.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.+...+.++++ +.+...+.+++..++++||||+|+++|..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~----------~~~~f~~~~~pt~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISY----------TTNKFPSEYVPTVF------DNYAVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHH----------HcCCCCCCCCCcee------eeeEEEEEECCEEEEEEEEECCCccchhhh
Confidence 79999999999999999998 44444444556665 444456778898999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~ 207 (432)
+..+++++|++|+|||+++++||+++. .|+.++....+++|++|||||+|+.+. +.+..++++++++
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~ 145 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR 145 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH
Confidence 999999999999999999999999995 699999877778999999999998543 6788899999999
Q ss_pred hcC-CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 208 KNQ-MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 208 ~~~-~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+.+ +.|+|+||++|.||+++|+.+++.+
T Consensus 146 ~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 146 DLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 887 6999999999999999999999864
No 24
>KOG0081|consensus
Probab=99.97 E-value=1.5e-32 Score=239.07 Aligned_cols=171 Identities=35% Similarity=0.626 Sum_probs=156.8
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC---------CeEEE
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD---------GKRVK 125 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~---------~~~v~ 125 (432)
-++++.+|++.+|++|||||+++.++ .++.+...++.++| |||..+.+.++ +..+.
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~Y----------TD~~F~~qFIsTVG-----IDFreKrvvY~s~gp~g~gr~~rih 68 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQY----------TDGKFNTQFISTVG-----IDFREKRVVYNSSGPGGGGRGQRIH 68 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEe----------cCCcccceeEEEee-----cccccceEEEeccCCCCCCcceEEE
Confidence 35789999999999999999999997 77777888888888 79988877663 46799
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+++|||+|||+|+++...|+++|-++|++||+++..||-++..|+.+++.+. ++.-||++|||+||++.|+|+++++.
T Consensus 69 LQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~ 148 (219)
T KOG0081|consen 69 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAA 148 (219)
T ss_pred EeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999987654 77889999999999999999999999
Q ss_pred HHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 204 MYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 204 ~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++|.++++||||+||-+|.||++..+.|+..++++.+
T Consensus 149 ~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 149 ALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred HHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 25
>KOG0088|consensus
Probab=99.97 E-value=7.3e-32 Score=234.70 Aligned_cols=177 Identities=29% Similarity=0.507 Sum_probs=154.9
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
..+..+.+|++++|..-||||||+-|+ .+++|...++ .++. -.|..+.+.+.+....+.||||+|
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy-~EnkFn~kHl---------sTlQ-----ASF~~kk~n~ed~ra~L~IWDTAG 71 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRY-VENKFNCKHL---------STLQ-----ASFQNKKVNVEDCRADLHIWDTAG 71 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHH-HHhhcchhhH---------HHHH-----HHHhhcccccccceeeeeeeeccc
Confidence 345678899999999999999999995 7777653322 1111 266778888999999999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
||+|..+-+.||++++++|+|||++|++||+.++.|..+++... ..+.++|||||+||+++|+|+.++++.+|+..|+.
T Consensus 72 QErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~ 151 (218)
T KOG0088|consen 72 QERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL 151 (218)
T ss_pred hHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh
Confidence 99999999999999999999999999999999999999999876 56889999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccc
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNGMERLW 245 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~ 245 (432)
|+|+||+.+.||.|+|+.|...+++........
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~ 184 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAKMIEHSSQRQRT 184 (218)
T ss_pred heecccccccCHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999888766544433
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.3e-30 Score=233.70 Aligned_cols=165 Identities=45% Similarity=0.753 Sum_probs=144.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
++.+||+++|++|||||||+++| .+ ..+...+.+++| +++....+.+++..+.+++|||+|++.+
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~-~~---------~~f~~~~~~t~~-----~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 65 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRF-SE---------DSFNPSFISTIG-----IDFKIRTIELDGKKIKLQIWDTAGQERF 65 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHH-hh---------CcCCcccccCcc-----ceEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 46799999999999999999997 33 333334445554 4666777888898899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
..++..+++++|++|+|||++++++|+++..|+..+.... .++|+++||||+|+.+.+++..+++..+++.++++++++
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLET 145 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999999999999999999999998765 579999999999998778888888999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhh
Q psy3450 217 SPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~ 237 (432)
||++|.|++++|+++++.+.+
T Consensus 146 Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 146 SAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 27
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=2.2e-30 Score=236.06 Aligned_cols=166 Identities=34% Similarity=0.633 Sum_probs=141.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC----------CeEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD----------GKRVKLQ 127 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~----------~~~v~l~ 127 (432)
++.+||+++|++|||||||+++| ....+...+.+++| +++....+.++ +..+.+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQY----------TDNKFNPKFITTVG-----IDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHH----------hcCCCCccCCCccc-----eEEEEEEEEEcCccccccccCCCEEEEE
Confidence 46799999999999999999997 33333333444444 35555555443 4578999
Q ss_pred EEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH
Q psy3450 128 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY 205 (432)
Q Consensus 128 i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~ 205 (432)
||||+|+++|..++..+++++|++|+|||+++++||+++..|+.++.... ++.|+++||||+|+.+++.+..+++..+
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~ 146 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL 146 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999997754 5789999999999988788888999999
Q ss_pred HHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 206 AIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 206 a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+++.+++++++||++|.|++++|++|++.+.++
T Consensus 147 ~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 147 ADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988653
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3e-30 Score=240.63 Aligned_cols=165 Identities=28% Similarity=0.533 Sum_probs=142.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCcccch
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~~~ 139 (432)
+||+++|++|||||||+++| ..+.+...+.+++| .++..+.+.++ +..+.+.+|||+|+++|..
T Consensus 1 ~KivivG~~~vGKTsli~~l----------~~~~~~~~~~~t~~-----~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRY----------VHGIFSQHYKATIG-----VDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHH----------HcCCCCCCCCCcee-----EEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 58999999999999999997 33333333445554 46667777787 8889999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-CcE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-MAF 213 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~-~~~ 213 (432)
++..+++++|++|+|||++++++|+++..|+.++.... .++|++|||||+|+.+.+.+..+++.++++..+ ..|
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence 99999999999999999999999999999999887532 578999999999997677888999999999998 699
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+++||++|.||+++|++|++.+.+..+
T Consensus 146 ~e~Sak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 146 FETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence 999999999999999999999977644
No 29
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=5e-30 Score=238.99 Aligned_cols=169 Identities=38% Similarity=0.680 Sum_probs=147.2
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
++..+||+++|++|||||||+++| .+..| ...+.+++| +++....+.+++..+.+.||||+|++.
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRF-ADNTF---------SGSYITTIG-----VDFKIRTVEINGERVKLQIWDTAGQER 67 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHH-hcCCC---------CCCcCcccc-----ceeEEEEEEECCEEEEEEEEeCCCchh
Confidence 356799999999999999999997 33333 222334443 467777788888889999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
+..++..+++++|++|+|||++++++|+++..|+..+....++.|++|||||+|+.+.+.+..+++..+++..+++|+++
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 147 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET 147 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999998877889999999999998777788888999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~ 240 (432)
||++|.||+++|++|++.+++...
T Consensus 148 Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 148 SAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred ECCCCcCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999977544
No 30
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=3.8e-30 Score=229.76 Aligned_cols=159 Identities=28% Similarity=0.465 Sum_probs=138.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.| ...+.++++ +...+.+.+++..+.++||||+|+++|..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQF-VQGIF---------VEKYDPTIE------DSYRKQIEVDGQQCMLEILDTAGTEQFTAM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCC---------CcccCCchh------hhEEEEEEECCEEEEEEEEECCCccccchH
Confidence 79999999999999999997 33333 233334443 555677888998999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++++|++++|||++++++|+++..|+..+.... +++|+++|+||+|+.+++.+..+++..+++.++.+++++||
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSA 145 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecC
Confidence 9999999999999999999999999999999987654 57999999999999877778888888899888899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++|+++++.+
T Consensus 146 ~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 146 KSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=4e-30 Score=231.22 Aligned_cols=159 Identities=42% Similarity=0.690 Sum_probs=140.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.+...+.+++| .++....+.+++..+.+++||++|++++..+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRF----------TDNEFHSSHISTIG-----VDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred CEEEEECcCCCCHHHHHHHH----------hcCCCCCCCCCcee-----eEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 48999999999999999998 33333333445554 3566677888898999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++++|||+++++||+++..|+..+.... .++|+++||||.|+.+++.+..+++..+++.++++|+|+||+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 145 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC 145 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999999999999999999999999999998766 469999999999998888899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRR 234 (432)
Q Consensus 220 tg~nI~elf~~L~~~ 234 (432)
+|.||+++|++|++.
T Consensus 146 ~~~~v~~~f~~l~~~ 160 (161)
T cd04117 146 TNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999864
No 32
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.1e-30 Score=238.78 Aligned_cols=169 Identities=22% Similarity=0.383 Sum_probs=133.3
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCc---cccccceeEE-EEEECCeEEEEEEEeCCCCc
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK---YDDMLAYKTT-TILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~---~~~tid~~~~-~i~i~~~~v~l~i~Dt~G~e 135 (432)
.+||+++|++|||||||+.+++.++.|. ...+...+.|++|. +....++..+ .+.+++..+.++||||+|++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~----~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~ 77 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLT----QYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDH 77 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcc----cccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCCh
Confidence 4799999999999999997544554442 22223334455531 1000111111 22578999999999999998
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCC-------------------Cc
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAF-------------------NR 195 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~-------------------~r 195 (432)
+ .+...+++++|++|+|||+++++||+++. .|+.+++...+++|++|||||+||.+ .+
T Consensus 78 ~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T cd01873 78 D--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNAD 155 (195)
T ss_pred h--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCC
Confidence 6 35667899999999999999999999996 69999988777899999999999964 47
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.++.++++++|++++++|+||||++|.||+++|+.++++
T Consensus 156 ~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 156 ILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999864
No 33
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=6.8e-30 Score=229.75 Aligned_cols=163 Identities=41% Similarity=0.694 Sum_probs=143.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ .. +.+...+.++.| .++....+.+++..+++++||++|++++..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~-~~---------~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRF-AD---------DTYTESYISTIG-----VDFKIRTIELDGKTIKLQIWDTAGQERFRT 66 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHH-hc---------CCCCCCCCCccc-----eeEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 589999999999999999998 33 333333334443 467777888889899999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
++..+++++|++|+|||+++++||+++..|+..+.... ++.|+++|+||+|+...+.+..+++..+++.++++|+++||
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 99999999999999999999999999999999998776 67999999999999877888889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy3450 219 LCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~~ 237 (432)
++|.|++++|+++++.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 147 KNATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=7.5e-30 Score=242.10 Aligned_cols=164 Identities=23% Similarity=0.423 Sum_probs=140.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+|+|++|||||+|+++| ..+. +...+.|+++ +.+...+.+++..+.|.||||+|++.|..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~-~~~~---------f~~~y~pTi~------~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVF-AKDA---------YPGSYVPTVF------ENYTASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHH-HcCC---------CCCccCCccc------cceEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 79999999999999999997 3333 3344556664 344567788999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~ 207 (432)
++.+++++|++|+|||++++++|+++ ..|..++....+++|+||||||+||.++ ..++.++++.+++
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 99999999999999999999999999 6788888877789999999999999642 1378889999999
Q ss_pred hcCC-cEEEEcCCCCCC-HHHHHHHHHHHHhhhcC
Q psy3450 208 KNQM-AFFEVSPLCDFN-IRESFTELSRRALQRNG 240 (432)
Q Consensus 208 ~~~~-~~~evSAktg~n-I~elf~~L~~~i~~~~~ 240 (432)
+.++ +|+||||+++.| |+++|+.++...+.+..
T Consensus 146 ~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 146 QVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred HcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 9996 999999999985 99999999998876543
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5.2e-30 Score=229.15 Aligned_cols=160 Identities=36% Similarity=0.696 Sum_probs=145.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|+++||||||+++| .++.|+ ..+.+++| .+...+.+.+++..+.+++||++|+++|..++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 65 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRL-INGEFP---------ENYIPTIG-----IDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR 65 (162)
T ss_dssp EEEEEESTTSSHHHHHHHH-HHSSTT---------SSSETTSS-----EEEEEEEEEETTEEEEEEEEEETTSGGGHHHH
T ss_pred CEEEECCCCCCHHHHHHHH-Hhhccc---------cccccccc-----cccccccccccccccccccccccccccccccc
Confidence 8999999999999999997 333333 33444554 47788888999999999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC-CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~-~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
..+++++|++|+|||+++++||+.+..|+..+....+ ++|++|||||.|+.++++++.+++++++++++.+|+|+||++
T Consensus 66 ~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 145 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKN 145 (162)
T ss_dssp HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCC
Confidence 9999999999999999999999999999999999886 799999999999988889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy3450 221 DFNIRESFTELSRRAL 236 (432)
Q Consensus 221 g~nI~elf~~L~~~i~ 236 (432)
+.||.++|..+++.++
T Consensus 146 ~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 146 GENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999874
No 36
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=6.6e-30 Score=233.35 Aligned_cols=158 Identities=27% Similarity=0.469 Sum_probs=135.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+.++ ..+.| ...+.++++ +.+...+.+++..++++||||+|+++|..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~-~~~~f---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISY-TTNAF---------PGEYIPTVF------DNYSANVMVDGKPVNLGLWDTAGQEDYDRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHH-hcCCC---------CCcCCCcce------eeeEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 69999999999999999997 33333 333445553 455566778899999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~ 207 (432)
+..+++++|++|+|||+++++||+++. .|+..+....+++|++|||||+||.+. +.++.+++.++++
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 145 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 999999999999999999999999994 799988877778999999999999543 3588899999999
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~~ 234 (432)
+++. +|+||||++|.||+++|+.+++.
T Consensus 146 ~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 146 EIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 9985 99999999999999999999864
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.2e-29 Score=228.65 Aligned_cols=162 Identities=36% Similarity=0.620 Sum_probs=141.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ....+...+.+++| +++....+..++..+.+++|||+|++++..+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~ 66 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRY----------ADDSFTSAFVSTVG-----IDFKVKTVFRNDKRVKLQIWDTAGQERYRTI 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH----------hcCCCCCCCCCcee-----eEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 79999999999999999998 33333333444444 3566667777888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++++|||++++++|+++..|+..+.... +++|+++||||+|+.+++.+..+++.++++.++++++++||+
T Consensus 67 ~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T cd01865 67 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK 146 (165)
T ss_pred HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999998766 578999999999998777788888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy3450 220 CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 220 tg~nI~elf~~L~~~i~~ 237 (432)
+|.|++++|+++++.+.+
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 147 ENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987643
No 38
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=9.5e-30 Score=235.19 Aligned_cols=164 Identities=26% Similarity=0.466 Sum_probs=140.8
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| ..+.| ...+.++++ +...+.+.+++..+.++||||+|+++|..++
T Consensus 1 ki~ivG~~~vGKTsli~~l-~~~~f---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQL-CLNHF---------VETYDPTIE------DSYRKQVVVDGQPCMLEVLDTAGQEEYTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHH-HhCCC---------CccCCCchH------hhEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 6899999999999999998 33333 333344444 4445667788888999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
..+++++|++|+|||+++++||+.+..|+..+.... +++|++|||||+|+..++.+..+++..+++.++++|+++|
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEAS 144 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEec
Confidence 999999999999999999999999999999887643 4689999999999987788888888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 218 PLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~~ 241 (432)
|++|.|++++|+++++.+.++...
T Consensus 145 Ak~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 145 AKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999988765544
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.1e-29 Score=227.98 Aligned_cols=159 Identities=26% Similarity=0.436 Sum_probs=138.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.+...+.++++ +.....+.+++..+.+++|||+|+++|..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~----------~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQF----------VQGIFVEKYDPTIE------DSYRKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHH----------HhCCCCcccCCcch------heEEEEEEECCEEEEEEEEECCCcccchhH
Confidence 69999999999999999997 33333333445554 444567788888999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++++|++|+|||+++..+|+++..|+..+.... +++|++|||||+|+..++.+..+++..+++.++++|+++||
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSA 145 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeC
Confidence 9999999999999999999999999999999987643 67999999999999877778888888899888999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++|+++++.+
T Consensus 146 ~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 146 KAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999876
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=233.58 Aligned_cols=164 Identities=28% Similarity=0.426 Sum_probs=142.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| ..+.| ...+.++++ +...+.+.+++..+.+++|||+|+++|..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQF-IQNHF---------IDEYDPTIE------DSYRKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHH-hcCCC---------CcCcCCchh------hEEEEEEEECCEEEEEEEEeCCCCccchh
Confidence 589999999999999999997 33333 333445554 44467778899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..|++++|++|+|||++++++|+++..|+..+.+.. +++|+++|+||+|+.+++.+..+++..+++.++++|+++|
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~S 148 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETS 148 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEee
Confidence 99999999999999999999999999999999987654 4789999999999977778888888889988899999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc
Q psy3450 218 PLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~ 239 (432)
|++|.||+++|++|++.+.+..
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.2e-29 Score=234.40 Aligned_cols=161 Identities=29% Similarity=0.471 Sum_probs=136.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| ..+.| ...+.++++ +.+...+.+++..+.++||||+|+++|..++
T Consensus 2 kivivG~~~vGKTsli~~~-~~~~~---------~~~~~~t~~------~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~ 65 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVF-TRGYF---------PQVYEPTVF------ENYVHDIFVDGLHIELSLWDTAGQEEFDRLR 65 (189)
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCC---------CCccCCcce------eeeEEEEEECCEEEEEEEEECCCChhccccc
Confidence 8999999999999999997 43333 333344554 3344566778888999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCc------------ccCHHHHHHHHHh
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNR------------TVTTREAEMYAIK 208 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r------------~v~~ee~~~~a~~ 208 (432)
..+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+||.+.+ .+..+++..+++.
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999995 6999998877889999999999996543 3567788888888
Q ss_pred cC-CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 209 NQ-MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 209 ~~-~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
.+ ++|+||||++|.||+++|++|++.++..
T Consensus 146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 146 INALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred cCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 77 6899999999999999999999998753
No 42
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.3e-29 Score=233.33 Aligned_cols=161 Identities=24% Similarity=0.501 Sum_probs=136.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| . .+.+...+.+++| .++..+.+.+++..+.+++|||+|+++|..+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~-~---------~~~f~~~~~~T~g-----~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKY-V---------EGEFDEDYIQTLG-----VNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHH-H---------hCCCCCCCCCccc-----eEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 58999999999999999997 3 3333334555665 4677778889999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC-CCcEEEEEECccCCC-----CcccCHHHHHHHHHhcCCcEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-GVPKVLVGNRLHLAF-----NRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~-~iPiILVgNK~DL~~-----~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+..+++++|++++|||+++++||+++..|+.++.+..+ ..| ++||||+|+.. ++....++++++++.++++++
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999999987653 456 68999999942 122234677889999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~ 237 (432)
++||++|.||+++|+++++.+.+
T Consensus 145 e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 145 FCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 43
>KOG0083|consensus
Probab=99.97 E-value=2.9e-31 Score=225.03 Aligned_cols=161 Identities=37% Similarity=0.616 Sum_probs=145.4
Q ss_pred EEeCcccchhHHHHHhhhcCCCCcccccCCCCc-CccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 64 LLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 64 vvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
+++|++++|||+|+-|| .++.+- ..++.++| +||..+.+.++++++++++|||+|||+|++...
T Consensus 1 mllgds~~gktcllir~----------kdgafl~~~fistvg-----id~rnkli~~~~~kvklqiwdtagqerfrsvt~ 65 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRF----------KDGAFLAGNFISTVG-----IDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTH 65 (192)
T ss_pred CccccCccCceEEEEEe----------ccCceecCceeeeee-----eccccceeccCCcEEEEEEeeccchHHHhhhhH
Confidence 37899999999999997 333322 23445566 799999999999999999999999999999999
Q ss_pred hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCD 221 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg 221 (432)
.||+++|+.+++||++|+.||++++.|+.+|.++. ..+.+.++|||+|+..+|.+..++++++++.+++||+|+|||+|
T Consensus 66 ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg 145 (192)
T KOG0083|consen 66 AYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTG 145 (192)
T ss_pred hhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceecccccc
Confidence 99999999999999999999999999999999887 56888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhc
Q psy3450 222 FNIRESFTELSRRALQRN 239 (432)
Q Consensus 222 ~nI~elf~~L~~~i~~~~ 239 (432)
.||+-.|..|++.+.+..
T Consensus 146 ~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 146 FNVDLAFLAIAEELKKLK 163 (192)
T ss_pred ccHhHHHHHHHHHHHHhc
Confidence 999999999999987643
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.4e-29 Score=238.30 Aligned_cols=166 Identities=21% Similarity=0.480 Sum_probs=142.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||++++ ..+.+...+.+++| +++....+..++..+.+.+|||+|+++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~----------~~~~f~~~~~~tig-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH----------LTGEFEKKYEPTIG-----VEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH----------hhCCCCCccCCccc-----eeEEEEEEEECCeEEEEEEEECCCchhh
Confidence 66799999999999999999997 33344444555655 4566666777888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
..++..|++++|++|+|||++++++|+.+..|+.++.+..+++|++|||||+|+.. +.+..+++ .+++..+++|+|+|
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcC
Confidence 99999999999999999999999999999999999988878899999999999953 45555555 77788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 218 PLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~ 240 (432)
|++|.||+++|++|++.+.+...
T Consensus 154 Ak~~~~i~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 154 AKSNYNFEKPFLYLARKLAGDPN 176 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcc
Confidence 99999999999999999876543
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=2.1e-29 Score=225.23 Aligned_cols=161 Identities=29% Similarity=0.563 Sum_probs=140.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .+..+ ...+.+++| .++..+.+.+++..+.+++|||+|++++..+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRY-CEGRF---------VSKYLPTIG-----IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCC---------CCCCCCccc-----eeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 58999999999999999998 33333 233444554 4666778888899999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC------CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA------PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~------~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++.+++++|++|+|||++++++|+.+..|+.++.+.. .+.|+++|+||+|+.+++.+..+++..++++.+++++
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999999998764 3589999999999976677888888899999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHh
Q psy3450 215 EVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~ 236 (432)
++||++|.|++++|++|++.++
T Consensus 146 ~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 146 ETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 46
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=3.3e-29 Score=226.48 Aligned_cols=166 Identities=36% Similarity=0.694 Sum_probs=143.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
+++.+||+++|++|||||||++++ .+..+ ...+.++.| .++....+.+++..+.+.+|||+|+++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQF-TDKRF---------QPVHDLTIG-----VEFGARMITIDGKQIKLQIWDTAGQES 65 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCccc-----eeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 357799999999999999999997 33332 222333333 366667778888889999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+..+...+++++|++|+|||++++++|+.+..|+.+++... +++|++||+||.|+.+++.+..+++..++.+.++.|+|
T Consensus 66 ~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 66 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999998765 68999999999999877788889999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~ 237 (432)
+||+++.|++++|+++++.+++
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=2.4e-29 Score=225.29 Aligned_cols=159 Identities=25% Similarity=0.427 Sum_probs=137.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.+ ...+.++++ ++....+.+++..+.++||||+|+++|..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQF-VSGTF---------IEKYDPTIE------DFYRKEIEVDSSPSVLEILDTAGTEQFASM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCchh------heEEEEEEECCEEEEEEEEECCCcccccch
Confidence 79999999999999999997 33333 333334443 566677888998899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++++|++|+|||++++++|+++..|+..+.+.. .++|++|||||+|+..++.+..+++..+++.++++++++||
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSA 145 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecC
Confidence 9999999999999999999999999999999987754 57999999999999777777777888888888899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++|+++++.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 146 KSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998754
No 48
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.8e-29 Score=230.35 Aligned_cols=169 Identities=35% Similarity=0.592 Sum_probs=145.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+. +...+.+++| .++..+.+.+++..+.+++|||+|++++..+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~-~~~~---------~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRF-TEDE---------FSESTKSTIG-----VDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCC---------CCCCCCCcee-----eEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 58999999999999999998 3333 3322334443 3566677888888999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++|+++..|+.++.... .++|+++||||+|+.+.+.+..+++..+++..+++|+++||+
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 145 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK 145 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999999999999999999999999998765 468999999999998778888889999999889999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCccc
Q psy3450 220 CDFNIRESFTELSRRALQRNGMERL 244 (432)
Q Consensus 220 tg~nI~elf~~L~~~i~~~~~~~~~ 244 (432)
+|.|++++|++|++.+.++.....+
T Consensus 146 ~~~~i~~~f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 146 QSINVEEAFILLVKLIIKRLEEQEL 170 (188)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCcC
Confidence 9999999999999999876554433
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=4.7e-29 Score=223.88 Aligned_cols=162 Identities=44% Similarity=0.736 Sum_probs=141.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+.+||+++|++|||||||++++ .+..+ ...+.+++| .++....+..++..+.+++||++|++++.
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRF-TRNEF---------NLDSKSTIG-----VEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCccc-----eEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 5689999999999999999998 33332 222334443 36677778888888999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC-CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~-~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
.++..++++++++|+|||++++.+|+++.+|+.++.+..+ ++|++||+||+|+...+++..++...+++..+++|+|+|
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETS 146 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 9999999999999999999999999999999999988764 599999999999987788888899999988899999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy3450 218 PLCDFNIRESFTELSRRA 235 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i 235 (432)
|++|.|++++|++++..+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 50
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=4.1e-29 Score=235.33 Aligned_cols=168 Identities=38% Similarity=0.593 Sum_probs=143.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEeCCCCcccc
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~Dt~G~e~~~ 138 (432)
.+||+++|++|||||||+++| .++.+. ..+.+++| .++..+.+.+ ++..+.+++|||+|++++.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l-~~~~~~---------~~~~~ti~-----~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRF-TEGRFA---------EVSDPTVG-----VDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHH-HcCCCC---------CCCCceec-----eEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 589999999999999999997 333332 22233443 4677777776 4678899999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
.++..+++++|++|+|||+++++||+++..|+.++.+.. ..+|++|||||+|+.+.+.+..+++..+++.++++|+|+
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 146 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIET 146 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999987654 357889999999998878899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcCCc
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNGME 242 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~~~ 242 (432)
||++|.||+++|++|++.+.++....
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987765433
No 51
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=6.4e-29 Score=234.79 Aligned_cols=170 Identities=38% Similarity=0.669 Sum_probs=148.4
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
+.++.+||+++|++|||||||+++| .++.+ ...+.+++| +++....+.+++..+.++||||+|++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l-~~~~~---------~~~~~~t~g-----~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRF-TRNEF---------CLESKSTIG-----VEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCcee-----EEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4567899999999999999999997 33333 222334444 47777888899999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+|..++..++++++++|+|||++++++|+++..|+..+.... .++|+++||||+|+...+.+..+++..++..++++|+
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999988765 4799999999999988888888999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++||++|.|++++|+++++.+.+...
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999877543
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=3.8e-29 Score=235.96 Aligned_cols=163 Identities=29% Similarity=0.455 Sum_probs=141.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECC-eEEEEEEEeCCCCcccch
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG-KRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~-~~v~l~i~Dt~G~e~~~~ 139 (432)
+||+++|++|||||||+++| .++. +...+.+++| +++..+.+.+++ ..+.++||||+|++.+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l-~~~~---------~~~~~~~T~~-----~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRF-AKEG---------FGKSYKQTIG-----LDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHH-hcCC---------CCCCCCCcee-----EEEEEEEEEeCCCCEEEEEEEECCCcHHHHH
Confidence 58999999999999999997 3333 3333445554 477777788865 578999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
++..+++++|++|+|||+++++||+++..|+..+.+.. .++|+++||||+|+.+++.+..+++..+++.+++++++
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~ 145 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCL 145 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999998764 34689999999999877889999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~ 238 (432)
+||++|.||+++|++|++.+...
T Consensus 146 iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 146 VSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 53
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=4.4e-29 Score=222.88 Aligned_cols=159 Identities=33% Similarity=0.613 Sum_probs=137.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC--CeEEEEEEEeCCCCcccc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD--GKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~--~~~v~l~i~Dt~G~e~~~ 138 (432)
+||+++|++|||||||++++ ..+.+ ...+.++++ .++....+.++ +..+++++|||+|+++|.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRF-VKGIF---------TKDYKKTIG-----VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCcEE-----EEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 58999999999999999997 33333 222333443 35555666666 778999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
.++..+++++|++++|||++++++|+.+..|+..+....+++|+++|+||+|+..++.+..+++..+++..+++++++||
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 145 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSV 145 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 99999999999999999999999999999999999877788999999999999877888888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRR 234 (432)
Q Consensus 219 ktg~nI~elf~~L~~~ 234 (432)
++|.|++++|++|...
T Consensus 146 ~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 146 KDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999753
No 54
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=4.3e-29 Score=226.01 Aligned_cols=159 Identities=30% Similarity=0.508 Sum_probs=135.2
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
|+|+|++|||||||+++| ..+.|+ ..+.++++ +.....+.+++..+.+++|||+|+++|..++.
T Consensus 1 i~i~G~~~vGKTsli~~~-~~~~~~---------~~~~~~~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISY-TTNAFP---------EDYVPTVF------ENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHH-HhCCCC---------CCCCCcEE------eeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 589999999999999997 444443 22233332 34455677889899999999999999999999
Q ss_pred hcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHHhc
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAIKN 209 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~~~ 209 (432)
.+++++|++|+|||+++++||+++. .|+..+....+++|++|||||+|+..+ +.++.+++.++++.+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 9999999999999999999999994 699999887788999999999999653 347888899999999
Q ss_pred CC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 210 QM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 210 ~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++ +|+||||++|.||+++|+.+++.+++
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 86 99999999999999999999988754
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=7.5e-29 Score=222.10 Aligned_cols=160 Identities=30% Similarity=0.477 Sum_probs=137.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .+..+. ..+.++.+ +...+.+.+++..+.+++|||+|++++..+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQF-VQGHFV---------DDYDPTIE------DSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCcCC---------cccCCchh------hhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 58999999999999999997 333333 22233332 445567778888999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++++|++++|||++++++|+++..|+..+.+.. .+.|+++||||+|+..++.+..+++..+++..+++|+++||
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSA 144 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeec
Confidence 9999999999999999999999999999998887654 46899999999999877778888888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy3450 219 LCDFNIRESFTELSRRAL 236 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~ 236 (432)
++|.|++++|++|++.+.
T Consensus 145 ~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 145 KERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=8.4e-29 Score=223.03 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=134.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .++.| ...+.++.+ ..+.+.+..++..+.+.+|||+|+++|..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~-~~~~f---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRF-VKGTF---------RESYIPTIE------DTYRQVISCSKNICTLQITDTTGSHQFPAM 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCC---------CCCcCCcch------heEEEEEEECCEEEEEEEEECCCCCcchHH
Confidence 79999999999999999997 33333 333334443 334455667778899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
+..+++++|++|+|||++++++|+++..|+..+.+.. +++|++|||||+|+...+++..+++..++..++++|+|+
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 145 (165)
T cd04140 66 QRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMET 145 (165)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEe
Confidence 9999999999999999999999999999988877643 579999999999997777888888888998889999999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRR 234 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~ 234 (432)
||++|.||+++|++|++.
T Consensus 146 SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 146 SAKTNHNVQELFQELLNL 163 (165)
T ss_pred ecCCCCCHHHHHHHHHhc
Confidence 999999999999999753
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.7e-29 Score=222.90 Aligned_cols=162 Identities=39% Similarity=0.641 Sum_probs=139.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
++.+||+++|++|+|||||++++ ....+ ...+.++.+ .++..+.+.+++..+.+++|||+|++++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRF-KSGTF---------SERQGNTIG-----VDFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHH-hhCCC---------cccCCCccc-----eEEEEEEEEECCEEEEEEEEECCChHHH
Confidence 35789999999999999999997 33333 222223332 3666777888888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~e 215 (432)
..++..+++++|++++|||++++++|+.+..|+..+.... +++|+++|+||+|+.+.+++..+++..+++..++ .++|
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 145 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLE 145 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999999999999999999999999998754 5799999999999988788888899999998886 7899
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~ 234 (432)
+||++|.|++++|+++++.
T Consensus 146 ~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 146 TSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999865
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=9.3e-29 Score=223.74 Aligned_cols=161 Identities=24% Similarity=0.536 Sum_probs=135.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.+...+.++++ +++....+..++..+.+.+|||+|++++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRH----------LTGEFEKKYVATLG-----VEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHH----------HhCCCCCCCCCcee-----eEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 58999999999999999998 33333333344443 3555566667888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
+..+++.+|++|+|||++++++|+.+..|+.++....+++|+++||||+|+.+ +.+. .+..++++..+++|+|+||++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKS 143 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999999999999999998877899999999999963 4444 344567777788999999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q psy3450 221 DFNIRESFTELSRRALQR 238 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~~ 238 (432)
|.||+++|++|++.+.+.
T Consensus 144 ~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 144 NYNFEKPFLWLARKLLGN 161 (166)
T ss_pred CCChHHHHHHHHHHHHhc
Confidence 999999999999998653
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=9e-29 Score=224.92 Aligned_cols=161 Identities=30% Similarity=0.512 Sum_probs=136.8
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| ..+. +...+.++++ .++..+.+.+++..++++||||+|+++|..++
T Consensus 2 ki~ivG~~~vGKTsli~~~-~~~~---------f~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRF-CKDV---------FDKNYKATIG-----VDFEMERFEILGVPFSLQLWDTAGQERFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHH-hcCC---------CCCCCCCcee-----eEEEEEEEEECCEEEEEEEEeCCChHHHHhhH
Confidence 8999999999999999998 3333 3334455554 46666778889989999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-C-CCcEEEEEECccCCCCcc--cCHHHHHHHHHhcCCcEEEEc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-P-GVPKVLVGNRLHLAFNRT--VTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~-~iPiILVgNK~DL~~~r~--v~~ee~~~~a~~~~~~~~evS 217 (432)
..+++++|++|+|||++++++|+.+..|+.++.+.. + +.|+++||||+|+.+.+. +..+++..++++++++|+++|
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~S 146 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999999999999999986543 3 578999999999965443 346677888888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++|.|++++|+.|++.+.+
T Consensus 147 a~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 147 ALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=1.2e-28 Score=219.06 Aligned_cols=158 Identities=28% Similarity=0.487 Sum_probs=135.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .++.| ...+.++.+ +...+.+.+++..+.+++|||+|++++..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQL-IQNHF---------VDEYDPTIE------DSYRKQVVIDGETCLLDILDTAGQEEYSAM 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCC---------cCCcCCcch------heEEEEEEECCEEEEEEEEECCCCcchHHH
Confidence 69999999999999999998 33333 223334443 445666778888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..|++++|++++|||++++.+|+++..|+..+.+.. .++|++||+||+|+.. +.+..+++.++++..+++++++||
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa 144 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSA 144 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecC
Confidence 9999999999999999999999999999999887764 5789999999999965 567778888888888999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++|+++++.+
T Consensus 145 ~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 145 KTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 61
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.1e-28 Score=226.67 Aligned_cols=164 Identities=31% Similarity=0.488 Sum_probs=137.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCcccch
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~~~ 139 (432)
+||+++|++|||||||+++| ..+.|+ ..+.++++ +.+...+..+ +..+.+.||||+|+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l-~~~~~~---------~~~~~t~~------~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVY-SQGKFP---------EEYVPTVF------ENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHH-HhCcCC---------CCCCCeee------eeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 58999999999999999997 333332 22333433 2233445554 7789999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC----cccCHHHHHHHHHhcCC-cE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN----RTVTTREAEMYAIKNQM-AF 213 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~----r~v~~ee~~~~a~~~~~-~~ 213 (432)
+++.+++++|++|+|||+++++||+++. .|+..+....+++|+++||||+|+..+ +.+..++++++++.+++ ++
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY 144 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999999999994 699888876778999999999999653 35778889999999988 99
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+++||++|.||+++|+.+++.+.....
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999977554
No 62
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=231.00 Aligned_cols=169 Identities=37% Similarity=0.683 Sum_probs=146.4
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.++.+||+|+|++|||||||+++| ....| ...+.++++ .++....+.+++..+.+.+|||+|++.
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l-~~~~~---------~~~~~~ti~-----~~~~~~~i~~~~~~i~l~l~Dt~G~~~ 67 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQF-TDKRF---------QPVHDLTIG-----VEFGARMITIDNKPIKLQIWDTAGQES 67 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHH-HhCCC---------CCCCCCCcc-----ceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 356799999999999999999997 33333 223334444 466677788899899999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+..++..+++++|++|+|||++++++|+.+..|+..+.... +++|+++|+||+|+...+.+..+++++++++++++|++
T Consensus 68 ~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 147 (210)
T PLN03108 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME 147 (210)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999887654 57999999999999887889999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+||+++.||+++|+++++.++++..
T Consensus 148 ~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 148 ASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999976543
No 63
>KOG0097|consensus
Probab=99.96 E-value=2.8e-29 Score=214.87 Aligned_cols=174 Identities=34% Similarity=0.656 Sum_probs=154.4
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
-.+.+.+|.+++|+-|||||+|+.+| .+.+|-. +.+ .++| ++|-.+.+++.|.+++++||||+||
T Consensus 6 ynysyifkyiiigdmgvgkscllhqf-tekkfma-------dcp--htig-----vefgtriievsgqkiklqiwdtagq 70 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQF-TEKKFMA-------DCP--HTIG-----VEFGTRIIEVSGQKIKLQIWDTAGQ 70 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHH-HHHHHhh-------cCC--cccc-----eecceeEEEecCcEEEEEEeecccH
Confidence 35678899999999999999999996 4444421 112 2444 5888999999999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
|+|+...+.||+++.+.++|||++.+.++..+..|+...+... |+..++++|||.||+.+|.++.+++.+|+++.|..|
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~f 150 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMF 150 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEE
Confidence 9999999999999999999999999999999999999888765 788899999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
+|+|||+|.||++.|-+.++.+.++-+...
T Consensus 151 le~saktg~nvedafle~akkiyqniqdgs 180 (215)
T KOG0097|consen 151 LEASAKTGQNVEDAFLETAKKIYQNIQDGS 180 (215)
T ss_pred EEecccccCcHHHHHHHHHHHHHHhhhcCc
Confidence 999999999999999999999988755443
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.5e-28 Score=227.39 Aligned_cols=165 Identities=36% Similarity=0.644 Sum_probs=141.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ....+.. ..+.++++ .++....+.+++..+.++||||+|++++..+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~-~~~~~~~--------~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRF-KDGAFLN--------GNFIATVG-----IDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCCCCc--------cCcCCccc-----ceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 58999999999999999997 3333321 12223333 3555666788899999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++|+++..|+..+.+.. .++|+++||||+|+..++.+..+++..+++.++++|+|+||+
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~ 146 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK 146 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999999999999999999999999998876 479999999999997778888889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q psy3450 220 CDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 220 tg~nI~elf~~L~~~i~~~~ 239 (432)
+|.|++++|++|++.+....
T Consensus 147 ~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 147 TGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999997654
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.5e-28 Score=219.56 Aligned_cols=160 Identities=28% Similarity=0.479 Sum_probs=137.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ ....+ ...+.++.+ +.....+.+++..+.+++|||||++++..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQF-IQSYF---------VTDYDPTIE------DSYTKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HhCCC---------CcccCCCcc------ceEEEEEEECCEEEEEEEEECCCCcchhH
Confidence 479999999999999999997 33332 222333433 44456667888889999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++++|++++|||++++.+|+.+..|+..+.+.. .++|++||+||+|+..++.+..+++.++++..+++++++|
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEee
Confidence 99999999999999999999999999999999987653 5789999999999987777888888899998899999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy3450 218 PLCDFNIRESFTELSRRA 235 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i 235 (432)
|++|.||+++|++|++.+
T Consensus 146 a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 146 AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998765
No 66
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1.5e-28 Score=229.74 Aligned_cols=158 Identities=21% Similarity=0.493 Sum_probs=136.5
Q ss_pred eCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcc
Q psy3450 66 VGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYS 145 (432)
Q Consensus 66 vG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~ 145 (432)
+|++|||||||+++| ..+.+...+.+++| +++....+.+++..+.+.||||+|+++|..++..|+
T Consensus 1 vG~~~vGKTsLi~r~----------~~~~f~~~~~~Tig-----~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRH----------LTGEFEKKYVATLG-----VEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHH----------hcCCCCCCCCCcee-----EEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHh
Confidence 699999999999998 33344444555665 467777788889999999999999999999999999
Q ss_pred cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHH
Q psy3450 146 RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225 (432)
Q Consensus 146 ~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~ 225 (432)
+++|++|+|||++++.||+.+..|+.++.+..+++|++|||||+|+.. +.+..++ ..+++..++.|+||||++|.||+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999999999998778899999999999854 5565544 46788889999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q psy3450 226 ESFTELSRRALQRNG 240 (432)
Q Consensus 226 elf~~L~~~i~~~~~ 240 (432)
++|++|++.+.+...
T Consensus 144 ~~F~~l~~~i~~~~~ 158 (200)
T smart00176 144 KPFLWLARKLIGDPN 158 (200)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999976543
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=1.4e-28 Score=219.96 Aligned_cols=159 Identities=41% Similarity=0.682 Sum_probs=138.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| . .+.+.....++.+ .++....+.+++..+.+++||++|+++|..+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l-~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRF-V---------ENKFKEDSQHTIG-----VEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHH-H---------hCCCCCCCCCcee-----eeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 58999999999999999998 3 3332222333333 3566677788888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++|.++..|+.+++... +++|++||+||+|+...+.+..+++..+++..++.++++||+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999987665 789999999999998778888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRR 234 (432)
Q Consensus 220 tg~nI~elf~~L~~~ 234 (432)
++.|++++|+++++.
T Consensus 146 ~~~~i~~~~~~~~~~ 160 (161)
T cd04113 146 TGENVEEAFLKCARS 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999875
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=1.8e-28 Score=221.27 Aligned_cols=161 Identities=32% Similarity=0.586 Sum_probs=137.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| ..+.+ ...+.+++| .++..+.+.+++..+.++|||++|++++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRY-VTNKF---------DTQLFHTIG-----VEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHH-HcCCC---------CcCcCCcee-----eEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 35699999999999999999997 33333 332333443 3566677888999999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM- 211 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~- 211 (432)
..++..+++++|++|+|||++++++|+.+..|+.++.... .++|++|||||+|+. ++.+..+++++++++++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~ 146 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDY 146 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999886543 468999999999986 577888999999998885
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~ 234 (432)
+++|+||++|.|++++|+++++.
T Consensus 147 ~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 89999999999999999999875
No 69
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=1.5e-28 Score=221.04 Aligned_cols=152 Identities=18% Similarity=0.391 Sum_probs=127.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.|.. .+.+..+ .+ .+.+.+++..+.+++|||+|++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~-~~~~f~~---------~~~~~~~------~~-~~~i~~~~~~~~l~i~D~~g~~~---- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRY-LTGSYVQ---------LESPEGG------RF-KKEVLVDGQSHLLLIRDEGGAPD---- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHH-HhCCCCC---------CCCCCcc------ce-EEEEEECCEEEEEEEEECCCCCc----
Confidence 48999999999999999997 3344432 1222222 33 46788899999999999999975
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCC--CCcccCHHHHHHHHHhc-CCcEEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLA--FNRTVTTREAEMYAIKN-QMAFFE 215 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~--~~r~v~~ee~~~~a~~~-~~~~~e 215 (432)
..+++.+|++++|||+++++||+++..|+.++.... +++|++|||||.|+. .++++..+++++++++. ++.|+|
T Consensus 60 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 138 (158)
T cd04103 60 -AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE 138 (158)
T ss_pred -hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence 356788999999999999999999999999998765 679999999999985 36789999999999876 589999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~ 234 (432)
|||++|.||+++|+.+++.
T Consensus 139 ~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 139 TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EecCCCCCHHHHHHHHHhh
Confidence 9999999999999999864
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=2.5e-28 Score=219.37 Aligned_cols=160 Identities=28% Similarity=0.520 Sum_probs=132.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.|. ....++.+ .++....+.+++..+.+++|||+|+++|..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERF-LMDGYE---------PQQLSTYA-----LTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCCC---------CCcCCcee-----eEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 58999999999999999997 333332 22222222 2445556677888999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
+..+++++|++|+|||++++.+|+++..|+..+.+..+++|+++|+||+|+... ..++...+++..+++++++||++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~ 142 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAAD 142 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999999999887778999999999998432 23455677777889999999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q psy3450 221 DFNIRESFTELSRRALQR 238 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~~ 238 (432)
|.|++++|+.+++.+.++
T Consensus 143 ~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 143 GTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988654
No 71
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=2.3e-28 Score=231.68 Aligned_cols=159 Identities=30% Similarity=0.466 Sum_probs=132.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.|. . +.+++| .++..+. ...+.+.||||+|++.|..+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~-~~~~f~---------~-~~~Tig-----~~~~~~~----~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRY-MERRFK---------D-TVSTVG-----GAFYLKQ----WGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred CEEEEECCCCCcHHHHHHHH-hcCCCC---------C-CCCccc-----eEEEEEE----eeEEEEEEEeCCCcccchhh
Confidence 58999999999999999997 444442 1 223443 1333222 24678999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCC-------------------CcccCHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAF-------------------NRTVTTR 200 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~-------------------~r~v~~e 200 (432)
+..+++++|++|+|||+++++||+++..|+..+.+.. +++|+||||||+||.+ .+++..+
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHH
Confidence 9999999999999999999999999988887776543 6799999999999975 6889999
Q ss_pred HHHHHHHhcC--------------CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 201 EAEMYAIKNQ--------------MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 201 e~~~~a~~~~--------------~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++..++++++ ++|+||||++|.||+++|..+++.++...
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999876 68999999999999999999999887543
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=3.7e-28 Score=220.08 Aligned_cols=161 Identities=34% Similarity=0.631 Sum_probs=138.9
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc-
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC- 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~- 138 (432)
.+||+++|++|||||||++++ ....+ ...+.++++ .++....+.+++..+.+.+|||+|++++.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRF-CAGRF---------PERTEATIG-----VDFRERTVEIDGERIKVQLWDTAGQERFRK 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHH-HhCCC---------CCcccccee-----EEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 479999999999999999998 33333 222333443 36667778889999999999999999886
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
.++..+++++|++++|||++++++|+.+..|+.++.... .++|+++|+||+|+...+++..+++.++++..+++|+|+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFET 146 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEE
Confidence 578889999999999999999999999999999988764 579999999999998888888899999999999999999
Q ss_pred cCCC---CCCHHHHHHHHHHHH
Q psy3450 217 SPLC---DFNIRESFTELSRRA 235 (432)
Q Consensus 217 SAkt---g~nI~elf~~L~~~i 235 (432)
||++ +.|++++|..+++.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 899999999999876
No 73
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=3.8e-28 Score=220.61 Aligned_cols=157 Identities=31% Similarity=0.533 Sum_probs=134.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .++.|. ..+.++. .+.....+.+++..+++++|||+|+++|..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~-~~~~~~---------~~~~~t~------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY-TTNGYP---------TEYVPTA------FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCCC---------CCCCCce------eeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 58999999999999999997 333333 2233333 2555667788888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~~~~a~ 207 (432)
+..+++++|++|+|||++++++|+++ ..|+..+....+++|+++||||+|+.. ++.+..+++..+++
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 144 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence 99999999999999999999999998 579998887667899999999999853 46788889999999
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHH
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~ 233 (432)
+.+. .|+|+||++|.||+++|+.++.
T Consensus 145 ~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 145 KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 9987 9999999999999999998864
No 74
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=7.7e-28 Score=222.20 Aligned_cols=165 Identities=26% Similarity=0.488 Sum_probs=139.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.|.. ..+.+++| .++..+.+.+++..+.+.+|||+|++++..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~-~~~~~~~--------~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERY-VHHRFLV--------GPYQNTIG-----AAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCcCC--------cCccccee-----eEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 48999999999999999997 3333321 12333443 2455677888999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC----CcccCHHHHHHHHHhcCCcEEEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF----NRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~----~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
+..+++++|++|+|||++++++|+++..|+..+....+++|+++|+||+|+.+ .+++..+++.+++..++++++++
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 146 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFET 146 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999999999999999988767899999999999853 24566778888888889999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 217 SPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~ 239 (432)
||++|.|++++|+++++.+.++.
T Consensus 147 Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 147 SSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999997654
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=5.7e-28 Score=216.37 Aligned_cols=161 Identities=30% Similarity=0.547 Sum_probs=135.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCcccc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~~ 138 (432)
+||+++|++|||||||++++..+ ..| ...+.++.| .++..+.+.++ +..+++.+|||+|++.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVF---------PKNYLMTTG-----CDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc---------CccCCCceE-----EEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 58999999999999999997221 123 223334443 35555556564 577999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
.++..+++++|++++|||++++++|+++..|+..+....+++|+++|+||+|+..++++..++++.++..++++++++||
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSA 146 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeC
Confidence 99999999999999999999999999999999999887677999999999999877778877778888888899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++|+.+++.+
T Consensus 147 ~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 147 LRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCChHHHHHHHHHHh
Confidence 99999999999999875
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=7.5e-28 Score=224.64 Aligned_cols=164 Identities=22% Similarity=0.321 Sum_probs=131.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+|+|++|||||||+++| ..+.|+ ..+.++.+ .++....+.+++..+.++||||+|.+.+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~-~~~~f~---------~~~~pt~~-----~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQF-LAQEFP---------EEYIPTEH-----RRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred CEEEEECCCCCcHHHHHHHH-HcCCCC---------cccCCccc-----cccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 58999999999999999997 444443 22333332 2444456678898899999999997654221
Q ss_pred --------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHH-
Q psy3450 141 --------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI- 207 (432)
Q Consensus 141 --------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~- 207 (432)
...+++++|++|+|||+++++||+.+..|++.+.+.. +++|++|||||+|+...+.+..++++.++.
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~ 145 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK 145 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH
Confidence 2345789999999999999999999999999887653 679999999999997777778887777764
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.++++|+|+||++|.||+++|+.+++.++.+.
T Consensus 146 ~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 146 SWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred hcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 56899999999999999999999999887643
No 77
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=1.6e-27 Score=226.10 Aligned_cols=197 Identities=21% Similarity=0.267 Sum_probs=150.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.+. ...+.++.+ .++..+.+.+++..+.+.+|||+|++ ..+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~-~~~~~~--------~~~~~~t~~-----~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~ 64 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQF-TSGEYD--------DHAYDASGD-----DDTYERTVSVDGEESTLVVIDHWEQE--MWT 64 (221)
T ss_pred CEEEEECCCCCcHHHHHHHH-hcCCcC--------ccCcCCCcc-----ccceEEEEEECCEEEEEEEEeCCCcc--hHH
Confidence 58999999999999999997 333321 022222222 25667788888989999999999998 334
Q ss_pred hhhccc-CceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 141 IRSYSR-GAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 141 ~~~~~~-~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
...+++ ++|++|+|||++++.+|+.+..|+..+.+.. .++|+|+|+||+|+...+++..+++.+++..++++|+|+|
T Consensus 65 ~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 144 (221)
T cd04148 65 EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETS 144 (221)
T ss_pred HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEec
Confidence 455667 9999999999999999999999999987754 5799999999999988888888888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhccc
Q psy3450 218 PLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGM 274 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l 274 (432)
|++|.||+++|+++++.+............. ..........+...++++++.+-..
T Consensus 145 A~~~~gv~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIRLRRDSKEKNERR-SRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccccccCcc-ccccccCccchHHHHHHHHHHHHhc
Confidence 9999999999999999987554433322110 0112222335677788888865443
No 78
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=1e-27 Score=213.99 Aligned_cols=162 Identities=48% Similarity=0.779 Sum_probs=139.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .+.. +.....++++ .++....+.+++..+.+++||++|++++..+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l-~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRF-TDGK---------FSEQYKSTIG-----VDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCC---------CCCCCCCcee-----eEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 58999999999999999998 2222 2222223332 3566677788888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++.+|++|+|||++++++++.+..|+..+.... +++|+++|+||+|+...+++..+++.+++++.+++++|+||+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 145 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAK 145 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999999999999999999999999988766 689999999999997767788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy3450 220 CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 220 tg~nI~elf~~L~~~i~~ 237 (432)
+|.|++++|+++.+.+.+
T Consensus 146 ~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 146 TNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998754
No 79
>KOG0395|consensus
Probab=99.96 E-value=7.3e-28 Score=224.17 Aligned_cols=164 Identities=29% Similarity=0.428 Sum_probs=149.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|.+|||||+|+.+| ....+...+.|+++ +.+.+.+.++++.+.+.|+||+|+++|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf----------~~~~f~~~y~ptie------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQF----------LTGRFVEDYDPTIE------DSYRKELTVDGEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred ceEEEEECCCCCCcchheeee----------cccccccccCCCcc------ccceEEEEECCEEEEEEEEcCCCcccChH
Confidence 589999999999999999997 44445555777776 88899999999999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
+...|++++|++++||+++++.||+.+..+++.|.+.. .++|+++||||+||...|+|+.+++++++..++++|+|+|
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~S 146 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETS 146 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEee
Confidence 99999999999999999999999999999999995433 5689999999999998899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc
Q psy3450 218 PLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~ 239 (432)
|+.+.||+++|..|++.+....
T Consensus 147 ak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 147 AKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred ccCCcCHHHHHHHHHHHHHhhh
Confidence 9999999999999999987633
No 80
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.1e-27 Score=216.87 Aligned_cols=159 Identities=26% Similarity=0.418 Sum_probs=134.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|+|||||+++| ..+.| ...+.++++ +.....+.+++..+.+.+|||+|++.|..+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSY-ANDAF---------PEEYVPTVF------DHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCC---------CCCCCCcee------eeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 58999999999999999997 33333 333334443 444556778888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~ 207 (432)
+..+++++|++|+|||++++.+|+++ ..|+..+....+++|+++||||+|+.+. +.++.+++..+++
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999 4798888776778999999999998542 3677888999999
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~~i 235 (432)
..++ +|+||||++|.||+++|+.+++.+
T Consensus 145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 145 EIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 9986 799999999999999999999876
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=8.9e-28 Score=231.60 Aligned_cols=160 Identities=28% Similarity=0.422 Sum_probs=137.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.| ...+.++++ ++..+.+.++++.++++||||+|++.|..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~-~~~~f---------~~~y~pTi~------d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRF-LGGRF---------EEQYTPTIE------DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHH-HcCCC---------CCCCCCChh------HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 58999999999999999997 33333 334455554 667778889999999999999999999998
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh----------CCCCcEEEEEECccCCCCcccCHHHHHHHHHh-c
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH----------APGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-N 209 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~----------~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-~ 209 (432)
+..++.++|++|+|||+++++||+++..|++++.+. ..++|+|||+||+|+..++++..+++.+++.. .
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~ 144 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDE 144 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcC
Confidence 888999999999999999999999999999998653 24799999999999977678888888887764 4
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
++.|+++||++|.||+++|++|++.+.
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999999998763
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=2e-27 Score=214.62 Aligned_cols=160 Identities=26% Similarity=0.446 Sum_probs=137.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .++.+ ...+.++.+ +...+.+.+++..+.+++|||+|+++|..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQF-VQNVF---------IESYDPTIE------DSYRKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCC---------CcccCCcch------heEEEEEEECCEEEEEEEEeCCCcccchhh
Confidence 69999999999999999997 33333 222334443 444677788888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-CcEEEEc
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-MAFFEVS 217 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~-~~~~evS 217 (432)
++.++++++++++|||++++++|+.+..|...+.+.. .++|+++|+||.|+...+.+..+++..+++.++ ++++++|
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETS 145 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEee
Confidence 9999999999999999999999999999999887643 579999999999998778888888888888888 7999999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy3450 218 PLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~ 236 (432)
|++|.|++++|+++++.++
T Consensus 146 A~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 146 ARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=9.9e-28 Score=215.65 Aligned_cols=159 Identities=33% Similarity=0.502 Sum_probs=131.6
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc-cchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR-FCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~-~~~l 140 (432)
||+++|++|||||||++++ ....|. ..+.++.+ ......+.+++..+.+++|||+|++. +...
T Consensus 1 ki~vvG~~~~GKtsli~~~-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF-LTKRFI---------GEYDPNLE------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQ 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHH-HhCccc---------cccCCChH------HhceEEEEECCEEEEEEEEECCCCcccccch
Confidence 6899999999999999997 333332 22222221 33345667888899999999999985 3455
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
...+++.+|++|+|||+++++||+.+..|+..+.... .++|+++||||+|+..++.+..+++..+++..+++|+|+|
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeC
Confidence 6778999999999999999999999999998888754 4799999999999977788888999999999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHh
Q psy3450 218 PLCDF-NIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~-nI~elf~~L~~~i~ 236 (432)
|++|. ||+++|+.|++.+.
T Consensus 145 a~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 145 AAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCchhHHHHHHHHHHHHh
Confidence 99995 99999999998763
No 84
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=1.8e-27 Score=212.33 Aligned_cols=159 Identities=36% Similarity=0.645 Sum_probs=137.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .+..+ ...+.++.+ .++....+.+++..+++++|||+|++++..+
T Consensus 1 ~ki~liG~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRF-MYDTF---------DNQYQATIG-----IDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHH-HcCCC---------CccCCCcee-----eeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 48999999999999999997 33332 222233333 4777788888888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++|+++..|+..+.... .++|+++|+||+|+...+++..++...+++..+++++++||+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999987655 369999999999997777788888889998889999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRR 234 (432)
Q Consensus 220 tg~nI~elf~~L~~~ 234 (432)
++.|++++|+++.+.
T Consensus 146 ~~~~v~~l~~~i~~~ 160 (161)
T cd01861 146 AGHNVKELFRKIASA 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999864
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2e-27 Score=215.71 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=135.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+.+||+++|++|||||||+++| .++.|. ...+.++++ .++....+.+++..+.+.+||++|++.+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~-~~~~f~--------~~~~~~T~~-----~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAF-LGRSFS--------LNAYSPTIK-----PRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHH-hCCCCC--------cccCCCccC-----cceEEEEEEECCeEEEEEEEecCCccccc
Confidence 5689999999999999999997 333332 033444554 25556677888988999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~evS 217 (432)
.++..+++++|++|+|||++++.+|+.+..|+..+... .++|+++|+||+|+.+++++..++..++++.+++ .++++|
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEE
Confidence 99999999999999999999999999999999876432 4699999999999976665555667778888887 579999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++|.|++++|+.+++.+.+
T Consensus 148 a~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred eccCccHHHHHHHHHHHhhC
Confidence 99999999999999998753
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=4.7e-27 Score=210.01 Aligned_cols=160 Identities=39% Similarity=0.655 Sum_probs=138.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||+|++++ .+..+ .....++.| .++....+.+++..+++.+||++|++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRF-VKNEF---------SENQESTIG-----AAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCccc-----eeEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 79999999999999999998 33332 222333333 2456677888999999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++|+.+..|+..+.... +++|+++|+||+|+...+.+..++...+++.+++.++++||+
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAK 146 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999998776 679999999999998777788888889999989999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRRA 235 (432)
Q Consensus 220 tg~nI~elf~~L~~~i 235 (432)
+|.|++++|++|++.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=5.3e-27 Score=220.45 Aligned_cols=169 Identities=37% Similarity=0.616 Sum_probs=141.4
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
....+..+||+++|++|||||||+++| ..+.+. .+.++.| .++....+.+++..+.+.||||+|
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l-~~~~~~----------~~~~t~~-----~~~~~~~~~~~~~~~~l~l~Dt~G 71 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSF-ISSSVE----------DLAPTIG-----VDFKIKQLTVGGKRLKLTIWDTAG 71 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHH-HhCCCC----------CcCCCce-----eEEEEEEEEECCEEEEEEEEECCC
Confidence 344556799999999999999999998 322221 1223333 366667777888889999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHH-HHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR-WLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~-~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+++|..++..+++++|++|+|||++++++|+++.. |...+.... .+.|++||+||+|+..++.+..++...+++..+
T Consensus 72 ~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~ 151 (211)
T PLN03118 72 QERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG 151 (211)
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999965 766665443 468999999999998777888888889999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+.|+|+||++|.|++++|++|.+.+.+.
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999664
No 88
>KOG0393|consensus
Probab=99.95 E-value=5.5e-28 Score=221.92 Aligned_cols=166 Identities=28% Similarity=0.490 Sum_probs=146.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~ 137 (432)
..+|++|||+.+||||+|+..+ ..+.|+ ..+.|++ .|.+...+.++ |+.+.+.+|||+||++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~-t~~~fp---------~~yvPTV------Fdnys~~v~V~dg~~v~L~LwDTAGqedY 66 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY-TTNAFP---------EEYVPTV------FDNYSANVTVDDGKPVELGLWDTAGQEDY 66 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe-ccCcCc---------ccccCeE------EccceEEEEecCCCEEEEeeeecCCCccc
Confidence 4589999999999999999986 444444 4455555 46777888895 99999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~ 204 (432)
..+++..|.++|+||+||++.+++||+++ .+|+.++++++|++|+||||+|.||.++ ..++.+++..
T Consensus 67 DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~ 146 (198)
T KOG0393|consen 67 DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE 146 (198)
T ss_pred ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence 99998999999999999999999999998 8999999999999999999999999742 3688899999
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+|++.|+ .|+||||++..|++++|+..++.++...+
T Consensus 147 lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 147 LAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999995 89999999999999999999999977543
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=9.6e-27 Score=209.58 Aligned_cols=163 Identities=34% Similarity=0.649 Sum_probs=137.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .+..+ .....++++ .++..+.+.+++..+++.+||++|++.+..+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQY-VNKKF---------SNQYKATIG-----ADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCCC---------CcCcCCccc-----eEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 58999999999999999998 33222 222233333 3566677788898999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC-----CCcEEEEEECccCCCCcccCHHHHHHHHHhcC-CcEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-----GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-MAFF 214 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~-----~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~-~~~~ 214 (432)
+..+++++|++|+|||++++++|+++..|...+..... ++|+++|+||+|+..++.+..++...+++..+ .+++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF 145 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence 99999999999999999999999999999888765542 79999999999997666677888888888887 7999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++||++|.|++++|+++.+.+.+.
T Consensus 146 ~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 146 ETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988765
No 90
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=1e-26 Score=210.63 Aligned_cols=159 Identities=30% Similarity=0.458 Sum_probs=132.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.||+++|++|||||||+++| .++.| ...+.++++ +.....+.+++..+.+.+|||+|+++|..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVF-SKDQF---------PEVYVPTVF------ENYVADIEVDGKQVELALWDTAGQEDYDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCccc------cceEEEEEECCEEEEEEEEeCCCchhhhhc
Confidence 58999999999999999997 43333 333344443 333456678888899999999999999988
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAI 207 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~a~ 207 (432)
+..+++++|++++|||++++++|+.+ ..|+..+.+..+++|+++|+||+|+... +.+..++++++++
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 88899999999999999999999998 5699988877678999999999998542 3455677888888
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~~i 235 (432)
..+. ++++|||++|.|++++|++|++.+
T Consensus 146 ~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 146 KIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 8775 899999999999999999998765
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=1.5e-26 Score=206.46 Aligned_cols=158 Identities=41% Similarity=0.736 Sum_probs=134.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .+..+ .....++.+ .++....+.+++..+++++|||+|++.+..+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRF-TDDTF---------DPDLAATIG-----VDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHH-HcCCC---------CcccCCccc-----ceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 58999999999999999998 33332 222233333 3556666777888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++++|++|+|||++++++|+.+..|+..+.... +++|+++|+||+|+. .+.+..++...+++..+++++++||
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEec
Confidence 9999999999999999999999999999999998765 579999999999996 4566778888999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRR 234 (432)
Q Consensus 219 ktg~nI~elf~~L~~~ 234 (432)
++|.|++++|+++++.
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=2.3e-26 Score=205.02 Aligned_cols=160 Identities=28% Similarity=0.459 Sum_probs=136.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ....+ ...+.++.+ +...+.+..++..+.+.+|||+|++++..+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l-~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQF-MYDEF---------VEDYEPTKA------DSYRKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCC---------ccccCCcch------hhEEEEEEECCEEEEEEEEECCChhhhhHH
Confidence 58999999999999999998 33333 223333333 444566778888999999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..+++.+|++++|||++++.+|+.+..|+..+.... .++|+++|+||+|+..++....++...++++++++++++||
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSA 144 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeC
Confidence 9999999999999999999999999999999888763 57999999999999765667778888888888899999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy3450 219 LCDFNIRESFTELSRRAL 236 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~ 236 (432)
++|.|++++|+.+.+.+.
T Consensus 145 ~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 145 KTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=2.3e-26 Score=204.37 Aligned_cols=160 Identities=34% Similarity=0.597 Sum_probs=135.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ....+. ....++.+ .++....+.+.+..+.+.+||++|++.+..+
T Consensus 1 ~ki~i~G~~~~GKStli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRY-VENKFN---------EKHESTTQ-----ASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCCC---------CCcCCccc-----eeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 58999999999999999998 333222 11112221 2444556667788889999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
++.+++++|++++|||++++++++.+..|+.++.... .++|+++|+||+|+...+++..+++.++++..+++++++||+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAK 145 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999999999999999999999999999988766 368999999999998777788888888999899999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRRA 235 (432)
Q Consensus 220 tg~nI~elf~~L~~~i 235 (432)
++.|++++|+++.+.+
T Consensus 146 ~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 146 TGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=2.5e-26 Score=211.78 Aligned_cols=163 Identities=28% Similarity=0.440 Sum_probs=134.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.||+|+|++|||||||++++ ..+.++ ..+.++++ +.....+.+++..+.+.+|||+|++.+..+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVF-TLGEFP---------EEYHPTVF------ENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCCC---------cccCCccc------ceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 59999999999999999997 322332 22223332 334456677888899999999999988887
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCC----------CcccCHHHHHHHHHhc
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAF----------NRTVTTREAEMYAIKN 209 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~----------~r~v~~ee~~~~a~~~ 209 (432)
...+++++|++++|||+++.++|+++. .|+..++...+++|++|||||+|+.+ .+.+..+++..+++.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI 145 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh
Confidence 777889999999999999999999995 69999988778899999999999854 3556678888999999
Q ss_pred CC-cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 210 QM-AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 210 ~~-~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+. +||||||++|.||+++|+++++.++.-.
T Consensus 146 ~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 146 GAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 85 8999999999999999999998886544
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=4.2e-26 Score=205.28 Aligned_cols=163 Identities=35% Similarity=0.606 Sum_probs=138.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||++++ ..+.+...+.++++ .++....+.+++..+.+.+||++|++.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRF----------TQGLFPPGQGATIG-----VDFMIKTVEIKGEKIKLQIWDTAGQERF 69 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHH----------HhCCCCCCCCCcee-----eEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 45789999999999999999997 22222222233333 3566677888898899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
...+..+++.+|++++|||++++++|+.+..|+.++.... .++|+++|+||+|+..++++..+....+.+.....++++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~ 149 (169)
T cd04114 70 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLET 149 (169)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 9988899999999999999999999999999999887765 469999999999998777888777788888778899999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i 235 (432)
||++|.|++++|++|.+.+
T Consensus 150 Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 150 SAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999865
No 96
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=3.2e-26 Score=213.07 Aligned_cols=159 Identities=25% Similarity=0.346 Sum_probs=130.8
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| .... +...+.++.+ ++....+.+++..+.++|||++|++.|..++
T Consensus 1 kv~vvG~~~vGKTsll~~~-~~~~---------~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRF-LYDT---------FEPKYRRTVE------EMHRKEYEVGGVSLTLDILDTSGSYSFPAMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHH-HhCC---------CCccCCCchh------hheeEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 6899999999999999998 3333 3332333332 4555677788888999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCC-CcccCHHHHHHHHH-hcCCcEEEEc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAF-NRTVTTREAEMYAI-KNQMAFFEVS 217 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~-~r~v~~ee~~~~a~-~~~~~~~evS 217 (432)
..+++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+.. ++.+..+++.+.+. .++++++++|
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 144 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETS 144 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEec
Confidence 999999999999999999999999999998887765 4699999999999965 46666666555543 4567999999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy3450 218 PLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~ 236 (432)
|++|.|++++|+++++.+.
T Consensus 145 a~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 145 AKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999874
No 97
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=1.2e-25 Score=202.11 Aligned_cols=157 Identities=29% Similarity=0.552 Sum_probs=129.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .+..+. ..+.++. .+.....+..++..+.+++||++|++++...
T Consensus 1 iki~i~G~~~~GKSsli~~l-~~~~~~---------~~~~~~~------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISY-TTGKFP---------TEYVPTV------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCCCC---------CCCCCce------eeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 58999999999999999998 333331 1122222 2444556677888999999999999998888
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCc-----------ccCHHHHHHHHHh
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNR-----------TVTTREAEMYAIK 208 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r-----------~v~~ee~~~~a~~ 208 (432)
...+++.+|++++|||++++++|..+ ..|+..+....+++|+++|+||+|+...+ .+..+++.+++..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 88889999999999999999999887 66888888877789999999999986543 3457788888888
Q ss_pred cCC-cEEEEcCCCCCCHHHHHHHHHH
Q psy3450 209 NQM-AFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 209 ~~~-~~~evSAktg~nI~elf~~L~~ 233 (432)
+++ +|+++||++|.|++++|++|++
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 887 9999999999999999999875
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.7e-25 Score=201.86 Aligned_cols=160 Identities=24% Similarity=0.297 Sum_probs=123.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ..+.|+.. +..+. +.......+++..+++++|||+|++++...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l-~~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSL-VSEEFPEN---------VPRVL-------PEITIPADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHH-HhCcCCcc---------CCCcc-------cceEeeeeecCCeEEEEEEeCCCchhhhHH
Confidence 48999999999999999997 44444321 11111 112233445677899999999999988887
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHHHHHHHHhcC--CcEEE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTREAEMYAIKNQ--MAFFE 215 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee~~~~a~~~~--~~~~e 215 (432)
+..+++++|++++|||++++++|+.+ ..|+..++...+++|+++|+||+|+.+.+.. ..++...+++.+. .++++
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE 143 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence 88888999999999999999999998 4788888877678999999999999765442 1233444444443 38999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~ 237 (432)
+||++|.|++++|+.+.+.+++
T Consensus 144 ~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 144 CSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred eccccccCHHHHHHHHHHHhcC
Confidence 9999999999999999988754
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=2.6e-26 Score=207.45 Aligned_cols=152 Identities=20% Similarity=0.302 Sum_probs=122.2
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
|+++|++|||||||+++| .++.+ ...+.+++| .+ . ..+++..+++.+||++|+++|..++.
T Consensus 2 i~ivG~~~vGKTsli~~~-~~~~~---------~~~~~pt~g-----~~--~--~~i~~~~~~l~i~Dt~G~~~~~~~~~ 62 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSL-SSERS---------LESVVPTTG-----FN--S--VAIPTQDAIMELLEIGGSQNLRKYWK 62 (164)
T ss_pred EEEECCCCCCHHHHHHHH-hcCCC---------cccccccCC-----cc--e--EEEeeCCeEEEEEECCCCcchhHHHH
Confidence 789999999999999997 33333 233445554 11 1 23455568899999999999999999
Q ss_pred hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH----HHHHHHHHhcCCcEEEEcC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT----REAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~----ee~~~~a~~~~~~~~evSA 218 (432)
.+++++|++|+|||.+++.+|..++.|+.++....+++|+++|+||.|+...+.+.. .++..++++.++.++++||
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa 142 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSL 142 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeee
Confidence 999999999999999999999999999998876557899999999999976554432 2345666777889999999
Q ss_pred CC------CCCHHHHHHHHHH
Q psy3450 219 LC------DFNIRESFTELSR 233 (432)
Q Consensus 219 kt------g~nI~elf~~L~~ 233 (432)
++ ++||+++|+.++.
T Consensus 143 ~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 143 DDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred cCCCChhHHHHHHHHHHHHhc
Confidence 98 9999999999874
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=2.2e-25 Score=197.64 Aligned_cols=157 Identities=31% Similarity=0.471 Sum_probs=133.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++++ +..+. ..+.++.+ +.....+..++..+.+++||++|++.+..++
T Consensus 1 ki~i~G~~~~GKTsli~~l~-~~~~~---------~~~~~~~~------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFV-KGTFV---------EEYDPTIE------DSYRKTIVVDGETYTLDILDTAGQEEFSAMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHH-hCCCC---------cCcCCChh------HeEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 68999999999999999983 22222 22223332 4455666778778999999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC--CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~--~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
..+++++|++++|||++++++++++..|...+..... +.|+++|+||+|+...+.+..+++..++++++.+++++||+
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 144 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence 9999999999999999999999999999988877654 79999999999998777788889999999988999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRR 234 (432)
Q Consensus 220 tg~nI~elf~~L~~~ 234 (432)
++.|++++|++|++.
T Consensus 145 ~~~~i~~l~~~l~~~ 159 (160)
T cd00876 145 DNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999875
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=2.6e-25 Score=195.62 Aligned_cols=157 Identities=46% Similarity=0.807 Sum_probs=134.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ .+..+ ...+.++.+ .++....+..++..+.+.+||++|++.+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRF-VDGKF---------DENYKSTIG-----VDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHH-HhCcC---------CCccCCcee-----eeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 58999999999999999998 33322 222223332 3566677777888899999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+..+++++|++|+|||++++++++.+..|+..+.... ++.|+++|+||+|+....+...++..+++++++++++++||+
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 145 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK 145 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence 9999999999999999999999999999999998876 679999999999997567778889999999889999999999
Q ss_pred CCCCHHHHHHHHH
Q psy3450 220 CDFNIRESFTELS 232 (432)
Q Consensus 220 tg~nI~elf~~L~ 232 (432)
++.|++++|++|.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999986
No 102
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=5.6e-25 Score=200.52 Aligned_cols=163 Identities=28% Similarity=0.410 Sum_probs=136.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.||+++|++|||||||+++| ....+. ..+.++.+ +.....+.+++..+.+++|||+|++++..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQF-VEGHFV---------ESYYPTIE------NTFSKIIRYKGQDYHLEIVDTAGQDEYSIL 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHH-HhCCCc---------cccCcchh------hhEEEEEEECCEEEEEEEEECCChHhhHHH
Confidence 58999999999999999998 333332 22223332 333566677888889999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+..++..++++++|||+++..+|+.+..|+..+.+.. .+.|+|+|+||+|+...+.+..++...+++.++.+++++||
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (180)
T cd04137 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSA 145 (180)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeC
Confidence 9999999999999999999999999999888877643 46899999999999776777777788888888899999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc
Q psy3450 219 LCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~~~~ 239 (432)
+++.|++++|+++.+.+.+..
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 146 RENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999886654
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=1.9e-25 Score=202.70 Aligned_cols=152 Identities=21% Similarity=0.276 Sum_probs=118.1
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ ..+.+. .+.+++| +++ ..+.. ..+.+++|||+|++++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l-~~~~~~----------~~~~t~g-----~~~--~~~~~--~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKL-KLGQSV----------TTIPTVG-----FNV--ETVTY--KNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHH-ccCCCc----------cccCCcc-----cce--EEEEE--CCEEEEEEECCCCHHHHH
Confidence 589999999999999999997 222221 1233443 122 22223 458899999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHh-----cCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-----NQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-----~~~~ 212 (432)
++..+++++|++|+|||++++.+|+++..|+.++... .+++|++||+||+|+.+ .+..++++.+.+. ..+.
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~ 146 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWY 146 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEE
Confidence 9999999999999999999999999998888776543 26799999999999954 3556666665431 2347
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~ 233 (432)
++++||++|.||+++|++|.+
T Consensus 147 ~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 147 VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEeeCCCCCChHHHHHHHhc
Confidence 899999999999999999864
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.6e-24 Score=204.17 Aligned_cols=168 Identities=23% Similarity=0.484 Sum_probs=139.8
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.....+||+++|++|||||||++++ ..+.+...+.+++| +++....+..++..+.+++|||+|++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRH----------LTGEFEKKYIPTLG-----VEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHH----------HhCCCCCCCCCccc-----eEEEEEEEEECCeEEEEEEEECCCch
Confidence 3455689999999999999999987 33334444555555 35556666678889999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+|..++..++++++++|+|||+++..+|.++..|+..+....+++|+++||||+|+.+ +.+..+. ..+++..++.|++
T Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~~~~~~~e 147 (215)
T PTZ00132 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD-RQVKARQ-ITFHRKKNLQYYD 147 (215)
T ss_pred hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc-ccCCHHH-HHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999987777899999999999854 3344333 4677778899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+||++|.|++++|.+|++.+..+..
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999976544
No 105
>KOG4252|consensus
Probab=99.93 E-value=3.8e-27 Score=209.13 Aligned_cols=181 Identities=27% Similarity=0.472 Sum_probs=164.3
Q ss_pred hcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEE
Q psy3450 46 ETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVK 125 (432)
Q Consensus 46 ~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~ 125 (432)
.++-+.....+.+.-+|++|+|..+|||||+|+++ ..+.++..+..++| +++....+.++++.+.
T Consensus 6 ~~~~~am~e~d~e~aiK~vivGng~VGKssmiqry----------CkgifTkdykktIg-----vdflerqi~v~~Edvr 70 (246)
T KOG4252|consen 6 FFRGMAMDETDYERAIKFVIVGNGSVGKSSMIQRY----------CKGIFTKDYKKTIG-----VDFLERQIKVLIEDVR 70 (246)
T ss_pred hhccCCCCchhhhhhEEEEEECCCccchHHHHHHH----------hccccccccccccc-----hhhhhHHHHhhHHHHH
Confidence 33434445566778899999999999999999998 67777777778887 7888888889999999
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHH
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMY 205 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~ 205 (432)
+.+|||+||++|..+...||++|++.+|||+-+|+.||+.+..|++++.....++|.++|-||+||.++.++..++++.+
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~l 150 (246)
T KOG4252|consen 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGL 150 (246)
T ss_pred HHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 206 AIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 206 a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~ 241 (432)
++.....++.+|++...||.++|.+|++.+.++..+
T Consensus 151 ak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 151 AKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776543
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=3.6e-25 Score=200.56 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=122.1
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| ....+ .. +.+++| .++ ..+.. ..+.+++|||+|++++..++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l-~~~~~---------~~-~~~T~~-----~~~--~~~~~--~~~~i~l~Dt~G~~~~~~~~ 60 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKL-KQDEF---------MQ-PIPTIG-----FNV--ETVEY--KNLKFTIWDVGGKHKLRPLW 60 (169)
T ss_pred CEEEECCCCCCHHHHHHHH-hcCCC---------CC-cCCcCc-----eeE--EEEEE--CCEEEEEEECCCChhcchHH
Confidence 6899999999999999998 22222 11 233333 122 23333 35789999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC------CcE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ------MAF 213 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~------~~~ 213 (432)
..+++++|++++|||++++++|+++..|+..+.... .+.|++||+||+|+.+ .++.+++..+++..+ +.+
T Consensus 61 ~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 61 KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEE
Confidence 999999999999999999999999999998886542 4689999999999953 466777777664322 268
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+++||++|.||+++|++|++.+....
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 89999999999999999998875543
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=6.4e-25 Score=205.49 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=120.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-----CeEEEEEEEeCCCCc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-----GKRVKLQLWDTSGQG 135 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-----~~~v~l~i~Dt~G~e 135 (432)
+||+++|+++||||||+++| .++ .+...+.+++| .++..+.+.++ ++.+.++||||+|++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~-~~~---------~f~~~~~~Tig-----~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLI-CKN---------QVLGRPSWTVG-----CSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHH-HcC---------CCCCCCCccee-----eeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 58999999999999999997 333 33333445554 34555555553 568999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--------------------CCCCcEEEEEECccCCCCc
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--------------------APGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--------------------~~~iPiILVgNK~DL~~~r 195 (432)
+|..++..|++++|++|+|||+++++||+++..|+.++... .+++|++|||||.|+.++|
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 99999999999999999999999999999999999999763 1468999999999998777
Q ss_pred ccCHHH----HHHHHHhcCCcEEEEcCCCCC
Q psy3450 196 TVTTRE----AEMYAIKNQMAFFEVSPLCDF 222 (432)
Q Consensus 196 ~v~~ee----~~~~a~~~~~~~~evSAktg~ 222 (432)
.+..+. ...+|++.+++.++.+++++.
T Consensus 146 ~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 146 ESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred ccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 666653 446788899999999988653
No 108
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=4e-25 Score=222.47 Aligned_cols=200 Identities=19% Similarity=0.255 Sum_probs=149.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc-
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR- 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~- 136 (432)
...+||+++|++|||||||+|+| .+..+.. .++..+ +|.+.....+..++ .++.||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l-~~~k~~i----------vs~k~~---tTr~~~~~~~~~~~--~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRI-IGEKLSI----------VTPKVQ---TTRSIITGIITLKD--TQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHH-hCCceee----------ccCCCC---CccCcEEEEEEeCC--eEEEEEECCCcCCC
Confidence 45679999999999999999997 4444321 111121 22344445555665 4579999999853
Q ss_pred cchhhh-------hcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 137 FCTIIR-------SYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 137 ~~~l~~-------~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
+..+.. .+++++|++|+|+|.++ +|.++. .|+..++.. +.|+++|+||+|+.+. ..+++.+++..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---~~~~~~~~l~~ 186 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---YLNDIKAFLTE 186 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---cHHHHHHHHHh
Confidence 322221 24689999999999655 566663 456555543 3678899999999642 24556666655
Q ss_pred cC--CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCcee
Q psy3450 209 NQ--MAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHL 286 (432)
Q Consensus 209 ~~--~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~ 286 (432)
.+ ..++++||++|.|++++|++|.+.+ +...++++.+..++.+.+|+
T Consensus 187 ~~~~~~i~~iSAktg~gv~eL~~~L~~~l--------------~~~~~~~~~~~~td~~~~~~----------------- 235 (339)
T PRK15494 187 NHPDSLLFPISALSGKNIDGLLEYITSKA--------------KISPWLYAEDDITDLPMRFI----------------- 235 (339)
T ss_pred cCCCcEEEEEeccCccCHHHHHHHHHHhC--------------CCCCCCCCCCCCCCCCHHHH-----------------
Confidence 44 5899999999999999999999887 66778999999999999999
Q ss_pred EEEEEEeeccccCCccccccccccccchhhhh
Q psy3450 287 LTYFQYCFAGLVRPSVDVNKNKYNLLSFSVIS 318 (432)
Q Consensus 287 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (432)
.+|+|||+++..+++|+||+..|..
T Consensus 236 -------~~eiiRe~~~~~~~~EiP~~~~v~i 260 (339)
T PRK15494 236 -------AAEITREQLFLNLQKELPYKLTVQT 260 (339)
T ss_pred -------HHHHHHHHHHhhCCcccCceEEEEE
Confidence 8999999999999999999999953
No 109
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=6.3e-25 Score=201.89 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=118.0
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||++++ ..+.+ . .+.+++| +....+.. ..+.+++||++|++++.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l-~~~~~---------~-~~~pt~g-------~~~~~~~~--~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKL-KLGEI---------V-TTIPTIG-------FNVETVEY--KNISFTVWDVGGQDKIR 75 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHH-ccCCC---------c-cccCCcc-------eeEEEEEE--CCEEEEEEECCCCHHHH
Confidence 3479999999999999999997 22222 1 1234443 22223333 35789999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHhc-----CC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-----QM 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-----~~ 211 (432)
.++..|++++|++|+|||++++++|+++..|+..+... .+++|++||+||+|+.+. +..++..+...-. .+
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCce
Confidence 99999999999999999999999999988777776432 257999999999999643 3334433332211 12
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.++++||++|+||+++|++|++.+.+
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 46689999999999999999988755
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=2.8e-25 Score=199.53 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=113.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||++++ ..+.+. .+.+++| .++ ..+.. ..+.+.+|||+|++++..+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l-~~~~~~----------~~~pt~g-----~~~--~~~~~--~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKL-KLGEIV----------TTIPTIG-----FNV--ETVEY--KNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred CEEEEECCCCCCHHHHHHHH-hcCCCc----------ccCCCCC-----cce--EEEEE--CCEEEEEEECCCCHhHHHH
Confidence 48999999999999999997 222222 1234443 122 23333 3588999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHH-HHHHH----hcCCcE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREA-EMYAI----KNQMAF 213 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~-~~~a~----~~~~~~ 213 (432)
+..+++++|++|+|||++++.+|+++.+|+..+.... .++|++||+||+|+.+. +..++. ..+.. ..++.+
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~ 138 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYI 138 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEE
Confidence 9999999999999999999999999988777764322 46899999999999542 233332 22211 223467
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy3450 214 FEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~ 233 (432)
+++||++|.||+++|++|.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999999864
No 111
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=4.9e-25 Score=201.14 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=116.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ ..+.+ . .+.+++| .++ ..+.. ..+.+++|||+|++++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~-~~~~~---------~-~~~~t~~-----~~~--~~~~~--~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKL-KLGES---------V-TTIPTIG-----FNV--ETVTY--KNISFTVWDVGGQDKIRP 72 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHH-hcCCC---------C-CcCCccc-----cce--EEEEE--CCEEEEEEECCCChhhHH
Confidence 589999999999999999997 22222 1 1234443 122 23333 357899999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~~~ 212 (432)
++..|++++|++|+|||++++++|+++..|+..+... .+++|++||+||.|+.+. ...++...... ...+.
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWY 150 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEE
Confidence 9999999999999999999999999998888877543 257899999999999643 23333333221 12345
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i 235 (432)
++++||++|.||+++|++|.+.+
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 77999999999999999998775
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=1.6e-24 Score=199.14 Aligned_cols=166 Identities=21% Similarity=0.364 Sum_probs=126.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEeCCCCcccc
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~Dt~G~e~~~ 138 (432)
.+||+++|++|||||||++++ ..+.+.. ..++.| +++....+.+ ++..+.+.+|||+|++++.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~-~~~~~~~----------~~~t~~-----~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRL-KFNEFVN----------TVPTKG-----FNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHH-hcCCcCC----------cCCccc-----cceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 479999999999999999997 3333321 112332 2333333433 4467889999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh--c----C
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK--N----Q 210 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~--~----~ 210 (432)
.++..+++++|++|+|||++++.+++.+..|+.++.... .+.|++||+||+|+.. .+..++...++.. . +
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~ 144 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTP 144 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCc
Confidence 999999999999999999999999999988988877543 4689999999999853 3444555544421 1 2
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
++++++||++|.|++++|++|++.+.+..++.+
T Consensus 145 ~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 145 WHVQPACAIIGEGLQEGLEKLYEMILKRRKMLR 177 (183)
T ss_pred eEEEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999999999976655443
No 113
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=5.2e-25 Score=215.07 Aligned_cols=197 Identities=18% Similarity=0.122 Sum_probs=142.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc-h-
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC-T- 139 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~-~- 139 (432)
+|+++|.+|||||||+|+| .+..+...+ +..+ +|.+.. ..+...+ ..++.||||||..... .
T Consensus 2 ~V~liG~pnvGKSTLln~L-~~~~~~~vs----------~~~~---TTr~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQL-HGQKISITS----------PKAQ---TTRNRI-SGIHTTG-ASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHH-hCCcEeecC----------CCCC---cccCcE-EEEEEcC-CcEEEEEECcCCCCCcchH
Confidence 6899999999999999998 333332111 1111 111222 2222233 2568999999975431 1
Q ss_pred ---h---hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-c
Q psy3450 140 ---I---IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-A 212 (432)
Q Consensus 140 ---l---~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~ 212 (432)
+ ...+++++|++++|+|+++..+++ ..++..+.. .+.|+++|+||+|+.+.. ...+....++...+. +
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKD 140 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCc
Confidence 1 234678999999999999887765 444555544 358999999999996422 223344455555554 8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEEEE
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQY 292 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~~~ 292 (432)
++++||++|.|++++++.+.+.+ +...+.++.+..++.+.+|+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l--------------~~~~~~~~~~~~t~~~~~~~----------------------- 183 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL--------------PEGPFRYPEDYVTDQPDRFK----------------------- 183 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC--------------CCCCCCCCCcccCCCCHHHH-----------------------
Confidence 99999999999999999998876 45556788888899888887
Q ss_pred eeccccCCccccccccccccchhhh
Q psy3450 293 CFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
.+|++||+++..+++|+||+..|.
T Consensus 184 -~~e~ire~~~~~~~~e~p~~~~~~ 207 (270)
T TIGR00436 184 -ISEIIREKIIRYTKEEIPHSVRVE 207 (270)
T ss_pred -HHHHHHHHHHHhcccccCceEEEE
Confidence 889999999999999999999984
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.92 E-value=1.9e-24 Score=196.29 Aligned_cols=154 Identities=20% Similarity=0.336 Sum_probs=119.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| .+..+. .+.+++| +....+.++ .+.+.+|||+|++.+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l-~~~~~~----------~~~~t~g-------~~~~~~~~~--~~~l~l~D~~G~~~~ 71 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKL-LGEDID----------TISPTLG-------FQIKTLEYE--GYKLNIWDVGGQKTL 71 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHH-ccCCCC----------CcCCccc-------cceEEEEEC--CEEEEEEECCCCHHH
Confidence 34589999999999999999997 222211 1223333 333445555 377899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~ 210 (432)
..++..+++++|++++|||++++.+|+++..|+..+... ..++|++||+||+|+.+. ...+++..+.+ ..+
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 149 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHH 149 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCc
Confidence 999999999999999999999999999998888877543 267999999999999643 24555555543 235
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~ 233 (432)
++++++||++|.|++++|++++.
T Consensus 150 ~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 150 WRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eEEEeccCCCCcCHHHHHHHHhc
Confidence 68999999999999999999864
No 115
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.3e-24 Score=198.25 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=118.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ ..+.+. . +.+++| .++ ..+.. ..+.+++|||+|++++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~-~~~~~~---------~-~~~T~~-----~~~--~~~~~--~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKL-KLGEVV---------T-TIPTIG-----FNV--ETVEY--KNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHH-hcCCcc---------c-cCCccc-----cce--EEEEE--CCEEEEEEECCCCHhHHH
Confidence 489999999999999999997 323332 1 223443 122 23333 457899999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~~~ 212 (432)
++..+++++|++|+|||++++++|+++..|+..+... ..++|++||+||.|+.+. +..++...... ...+.
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWY 154 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEE
Confidence 9999999999999999999999999998777766432 256899999999998542 33333322211 12235
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++++||++|.|++++|++|.+.+.+++
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 779999999999999999999886654
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.91 E-value=2e-24 Score=192.54 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=112.9
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
+|+++|++|||||||+++| .+..+ ....+.+++| +....+. ...+.+.+|||+|++++..++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l-~~~~~--------~~~~~~~t~g-------~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~ 62 (162)
T cd04157 1 NILVVGLDNSGKTTIINQL-KPENA--------QSQIIVPTVG-------FNVESFE--KGNLSFTAFDMSGQGKYRGLW 62 (162)
T ss_pred CEEEECCCCCCHHHHHHHH-cccCC--------CcceecCccc-------cceEEEE--ECCEEEEEEECCCCHhhHHHH
Confidence 5899999999999999998 22211 1222344554 1122222 335788999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcCCc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQMA 212 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~~~ 212 (432)
..+++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.... ..++...... ...+.
T Consensus 63 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~ 140 (162)
T cd04157 63 EHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWH 140 (162)
T ss_pred HHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEE
Confidence 999999999999999999999998888888875532 479999999999996432 2233222211 12346
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~ 233 (432)
++++||++|.|++++|++|.+
T Consensus 141 ~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCCCCchHHHHHHHhc
Confidence 899999999999999999864
No 117
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=1.4e-23 Score=192.41 Aligned_cols=137 Identities=34% Similarity=0.542 Sum_probs=123.4
Q ss_pred CccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh
Q psy3450 97 SPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176 (432)
Q Consensus 97 ~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~ 176 (432)
..+.+++| +++..+.+.+++..+++.||||+|+++|..++..|++++|++|+|||++++++|+++..|+..+...
T Consensus 7 ~~~~~Tig-----~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 7 NNYQSTIG-----IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCCCccc-----eEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34556666 5787888899999999999999999999999999999999999999999999999999999998765
Q ss_pred C-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 177 ~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
. +++|++|||||+||...+.+..+++..+++.+++.|+|+||++|.||+++|++|++.+.+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4 6789999999999987778899999999999999999999999999999999999998653
No 118
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=3.9e-24 Score=205.91 Aligned_cols=202 Identities=17% Similarity=0.154 Sum_probs=151.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.--|+++|.||||||||+|++ .+.+....+..+++++....++ ...+ ..++.|+||||..+-..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l-~G~KisIvS~k~QTTR~~I~GI--------------~t~~-~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNAL-VGQKISIVSPKPQTTRNRIRGI--------------VTTD-NAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHH-hcCceEeecCCcchhhhheeEE--------------EEcC-CceEEEEeCCCCCCcch
Confidence 346899999999999999997 7777666555555544332222 2223 67889999999764333
Q ss_pred hh--------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 140 II--------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 140 l~--------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
.. ...+.++|+++||.|+++...-. ....++.++. .+.|++++.||+|.........+....+.....+
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f 146 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF 146 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc
Confidence 22 23568999999999998854322 1333444444 3479999999999866544223333333344444
Q ss_pred -cEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEE
Q psy3450 212 -AFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYF 290 (432)
Q Consensus 212 -~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~ 290 (432)
.++++||++|.|++.+.+.+...+ +...+.++.+.+++.+.||+
T Consensus 147 ~~ivpiSA~~g~n~~~L~~~i~~~L--------------peg~~~yp~d~itD~~~rf~--------------------- 191 (298)
T COG1159 147 KEIVPISALKGDNVDTLLEIIKEYL--------------PEGPWYYPEDQITDRPERFL--------------------- 191 (298)
T ss_pred ceEEEeeccccCCHHHHHHHHHHhC--------------CCCCCcCChhhccCChHHHH---------------------
Confidence 899999999999999999999888 67888999999999999999
Q ss_pred EEeeccccCCccccccccccccchhhhh
Q psy3450 291 QYCFAGLVRPSVDVNKNKYNLLSFSVIS 318 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (432)
++|++||+++.++++|+||+.+|+.
T Consensus 192 ---~aEiiREk~~~~l~eElPhsv~VeI 216 (298)
T COG1159 192 ---AAEIIREKLLLLLREELPHSVAVEI 216 (298)
T ss_pred ---HHHHHHHHHHHhcccccCceEEEEE
Confidence 8999999999999999999999953
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=204.81 Aligned_cols=141 Identities=23% Similarity=0.379 Sum_probs=115.6
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-------------Ce
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-------------GK 122 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-------------~~ 122 (432)
+....+||+|+|+.|||||||+++| ..+.+...+.+++| .++..+.+.++ ++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf----------~~g~F~~~~~pTIG-----~d~~ik~I~~~~~~~~~~~ik~d~~k 81 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLI----------VKGSSIARPPQTIG-----CTVGVKHITYGSPGSSSNSIKGDSER 81 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHH----------hcCCcccccCCcee-----eeEEEEEEEECCcccccccccccCCc
Confidence 3456689999999999999999998 44444444555665 35555666654 35
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-------------CCCcEEEEEECc
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-------------PGVPKVLVGNRL 189 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-------------~~iPiILVgNK~ 189 (432)
.+.++||||+|+++|..++..|++++|++|+|||++++++|+++..|++++.... .++|++|||||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 7899999999999999999999999999999999999999999999999998752 258999999999
Q ss_pred cCCCCc---c---cCHHHHHHHHHhcCC
Q psy3450 190 HLAFNR---T---VTTREAEMYAIKNQM 211 (432)
Q Consensus 190 DL~~~r---~---v~~ee~~~~a~~~~~ 211 (432)
||..++ . +..++++++|+++++
T Consensus 162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 162 DIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccccHHHHHHHHHHcCC
Confidence 996543 2 368899999999874
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=2e-23 Score=189.04 Aligned_cols=152 Identities=21% Similarity=0.298 Sum_probs=115.5
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
+|+++|++|||||||+++| .+. + ...+.+++| +....+..+ .+.+++||++|++++..++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l-~~~-~---------~~~~~~t~g-------~~~~~~~~~--~~~~~i~D~~G~~~~~~~~ 60 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSAL-QGE-I---------PKKVAPTVG-------FTPTKLRLD--KYEVCIFDLGGGANFRGIW 60 (167)
T ss_pred CEEEECCCCCCHHHHHHHH-hCC-C---------CccccCccc-------ceEEEEEEC--CEEEEEEECCCcHHHHHHH
Confidence 4799999999999999997 222 2 223344554 223344444 4778999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCH-H---HHHHHHHhcC--CcE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTT-R---EAEMYAIKNQ--MAF 213 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~-e---e~~~~a~~~~--~~~ 213 (432)
..|++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+.+.+.... . .+..++++.+ +.+
T Consensus 61 ~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~ 140 (167)
T cd04161 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHI 140 (167)
T ss_pred HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEE
Confidence 999999999999999999999999999999887643 5789999999999975442111 1 1223333333 468
Q ss_pred EEEcCCCC------CCHHHHHHHHHH
Q psy3450 214 FEVSPLCD------FNIRESFTELSR 233 (432)
Q Consensus 214 ~evSAktg------~nI~elf~~L~~ 233 (432)
++|||++| .|+++.|+||..
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 88999998 899999999974
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.90 E-value=2.8e-23 Score=185.18 Aligned_cols=151 Identities=24% Similarity=0.404 Sum_probs=113.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||||+++| ....+.. ..+++| +....+..+ ..+.+.+|||+|++.+..++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~-~~~~~~~----------~~~t~~-------~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKL-KHAELVT----------TIPTVG-------FNVEMLQLE-KHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHH-hcCCccc----------ccCccC-------cceEEEEeC-CceEEEEEECCCCHhHHHHH
Confidence 5899999999999999998 3332211 123332 222334443 45789999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH------HHhcCCcE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY------AIKNQMAF 213 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~------a~~~~~~~ 213 (432)
..+++++|++|+|||++++.++.++..|+.++.... .+.|+++|+||+|+... ...++.... +...++++
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEE
Confidence 999999999999999999999999988888875432 57999999999998532 223333222 22234579
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy3450 214 FEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~ 233 (432)
+++||++|.||+++|++|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999999864
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=6.7e-23 Score=188.56 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=120.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||++++ .++.+. .+.++.+ .....+.+++ +.+.+||++|++.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l-~~~~~~----------~~~~T~~-------~~~~~i~~~~--~~~~l~D~~G~~~~~ 77 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHML-KDDRLA----------QHVPTLH-------PTSEELTIGN--IKFKTFDLGGHEQAR 77 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-hcCCCc----------ccCCccC-------cceEEEEECC--EEEEEEECCCCHHHH
Confidence 3589999999999999999997 332221 1223332 2234455555 568999999999998
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh--------
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-------- 208 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-------- 208 (432)
.++..+++++|++++|+|+++.++|+....|+..+.+.. .+.|+++|+||+|+.. .+..++++.+.+.
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKG 155 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCccccccccc
Confidence 888999999999999999999999998888888876533 5699999999999853 5666777766642
Q ss_pred --------cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 --------NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 --------~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
..+.+++|||++|.|++++|++|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 156 VSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22468999999999999999999865
No 123
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=9.1e-23 Score=185.80 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=114.9
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||++++ ..+.+. . +.+++| .....+.++ .+.+.+||++|++.+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l-~~~~~~---------~-~~~t~~-------~~~~~~~~~--~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQF-LLGEVV---------H-TSPTIG-------SNVEEIVYK--NIRFLMWDIGGQESLRS 74 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHH-ccCCCC---------C-cCCccc-------cceEEEEEC--CeEEEEEECCCCHHHHH
Confidence 479999999999999999997 333332 1 123333 112233344 47889999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHH-HHH----HhcCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAE-MYA----IKNQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~-~~a----~~~~~~ 212 (432)
.+..+++++|++|+|||++++++|..+..|+..+.+.. .++|+++|+||+|+.+ .+..++.. .+. +..+++
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~ 152 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWH 152 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceE
Confidence 99999999999999999999999998877777765432 5689999999999854 23334332 222 234567
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~ 233 (432)
++++||++|.||+++|++|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 999999999999999999874
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=3.9e-23 Score=184.58 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=109.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|++|||||+|++++ ..+.+.. ..+++| +....+.. ..+.+++|||+|++.+..++
T Consensus 1 kv~lvG~~~~GKTsl~~~l-~~~~~~~----------~~~t~~-------~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~ 60 (158)
T cd04151 1 RILILGLDNAGKTTILYRL-QLGEVVT----------TIPTIG-------FNVETVTY--KNLKFQVWDLGGQTSIRPYW 60 (158)
T ss_pred CEEEECCCCCCHHHHHHHH-ccCCCcC----------cCCccC-------cCeEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence 6899999999999999997 2222211 123332 22223333 34788999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHH-HH----HhcCCcEE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEM-YA----IKNQMAFF 214 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~-~a----~~~~~~~~ 214 (432)
..+++++|++|+|||++++.++....+|+..+.+. ..++|++||+||+|+.+.. ..++... +. ...+.+++
T Consensus 61 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 61 RCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEE
Confidence 99999999999999999988888776666554332 2579999999999986432 2233222 21 11234799
Q ss_pred EEcCCCCCCHHHHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~ 233 (432)
++||++|.|++++|++|++
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999975
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.89 E-value=1e-22 Score=182.73 Aligned_cols=157 Identities=22% Similarity=0.323 Sum_probs=116.5
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
+|+++|++|||||||++++ ...... ..+.....+.+++ ......+.++ ...+.+|||+|++.+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l-~~~~~~---~~~~~~~~~~~t~-------~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~ 67 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQL-KTLFSK---YKGLPPSKITPTV-------GLNIGTIEVG--NARLKFWDLGGQESLRSLW 67 (167)
T ss_pred CEEEEecCCCCHHHHHHHH-hhhccc---ccCCcccccCCcc-------ccceEEEEEC--CEEEEEEECCCChhhHHHH
Confidence 5899999999999999997 222111 0111111222233 2223344555 4678999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh-------cCCc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-------NQMA 212 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-------~~~~ 212 (432)
..+++++|++++|+|++++++++....|+..+.+.. .++|+++|+||+|+.. ....++...+.+. .+++
T Consensus 68 ~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 68 DKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceE
Confidence 999999999999999999999999888888876542 5799999999999854 3444555554433 2458
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~ 233 (432)
++++||++|.|++++|++|++
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999875
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.89 E-value=8.5e-23 Score=181.85 Aligned_cols=150 Identities=19% Similarity=0.296 Sum_probs=114.9
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+++|.+|||||||++++. +..+. ...++.+ +....+.++ .+.+.+||++|++.+...+
T Consensus 1 ki~iiG~~~~GKssli~~~~-~~~~~----------~~~~t~~-------~~~~~~~~~--~~~~~i~D~~G~~~~~~~~ 60 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK-LGEVV----------TTIPTIG-------FNVETVEYK--NVSFTVWDVGGQDKIRPLW 60 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh-cCCCC----------CCCCCcC-------cceEEEEEC--CEEEEEEECCCChhhHHHH
Confidence 68999999999999999982 22211 1223332 223334444 4678999999999999999
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcCCcEE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQMAFF 214 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~~~~~ 214 (432)
..+++++|++++|||+++++++..+..|+..+.... .+.|+++|+||+|+...+ ..++..+... ...++++
T Consensus 61 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 61 KHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEE
Confidence 999999999999999999999999988888776643 579999999999986533 2333333322 2345899
Q ss_pred EEcCCCCCCHHHHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~ 233 (432)
++||++|.|++++|++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999999875
No 127
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6e-22 Score=207.94 Aligned_cols=211 Identities=19% Similarity=0.099 Sum_probs=141.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc---
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG--- 135 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e--- 135 (432)
..+||+++|.+|||||||+|+|....... ..+..| ++.+.....+.+++.. +.+|||+|..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~-----------~s~~~g---tT~d~~~~~~~~~~~~--~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV-----------VDDVAG---TTVDPVDSLIELGGKT--WRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc-----------ccCCCC---ccCCcceEEEEECCEE--EEEEECCCccccc
Confidence 46899999999999999999983222111 111112 2345556667777765 4799999963
Q ss_pred -------ccchhh-hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cCHHHHHH-
Q psy3450 136 -------RFCTII-RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VTTREAEM- 204 (432)
Q Consensus 136 -------~~~~l~-~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~~ee~~~- 204 (432)
.|..+. ..+++++|++|+|||+++..+++++. ++..+.. .+.|+|||+||+|+.++.. ...++...
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~ 350 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRE 350 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHh
Confidence 333332 23578999999999999998888764 4555543 4689999999999964221 11112222
Q ss_pred HHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCc
Q psy3450 205 YAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGK 284 (432)
Q Consensus 205 ~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk 284 (432)
+.....++++++||++|.||+++|+.+.+.+....... .+...-+++............+|+
T Consensus 351 l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i------------------~t~~ln~~~~~~~~~~~~p~~~g~ 412 (472)
T PRK03003 351 LAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRI------------------PTGRLNAWLGELVAATPPPVRGGK 412 (472)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC------------------CHHHHHHHHHHHHHcCCCCCCCCe
Confidence 22223468999999999999999999998775433211 133344555554444444557899
Q ss_pred eeEEEEEEeeccccCCccccccc
Q psy3450 285 HLLTYFQYCFAGLVRPSVDVNKN 307 (432)
Q Consensus 285 ~~~~y~~~~~~~~~~~~~~~~~~ 307 (432)
.+++||.+|. ..-||.+-++.|
T Consensus 413 ~~k~~y~~q~-~~~pp~f~~~~~ 434 (472)
T PRK03003 413 QPRILFATQA-STRPPTFVLFTT 434 (472)
T ss_pred eeeEEEEECC-CCCCCEEEEEeC
Confidence 9999999988 666666666543
No 128
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=2.3e-22 Score=198.28 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=139.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch-
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT- 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~- 139 (432)
-.|+++|++|||||||+|+| .+..+......+.+ +.+. ...+... ...++.+|||||......
T Consensus 6 g~V~iiG~pn~GKSTLin~L-~g~~~~~vs~~~~t-------------t~~~-i~~i~~~-~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNAL-VGQKISIVSPKPQT-------------TRHR-IRGIVTE-DDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred EEEEEECCCCCCHHHHHHHH-hCCceeecCCCCCc-------------cccc-EEEEEEc-CCceEEEEECCCCCCchhH
Confidence 46999999999999999997 44433221111111 1111 1122222 236789999999754322
Q ss_pred -------hhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-
Q psy3450 140 -------IIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ- 210 (432)
Q Consensus 140 -------l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~- 210 (432)
.....+.++|++++|+|+++.. ... ..++..+.. .+.|+++|+||+|+...+....+....+.+..+
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~ 145 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDF 145 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCC
Confidence 2234568899999999998832 222 223333332 358999999999996433333445555655554
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEE
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYF 290 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~ 290 (432)
.+++++||+++.|++++++++.+.+ +...++++.+..++...+++
T Consensus 146 ~~i~~iSA~~~~gv~~L~~~L~~~l--------------~~~~~~y~~~~~td~~~r~~--------------------- 190 (292)
T PRK00089 146 AEIVPISALKGDNVDELLDVIAKYL--------------PEGPPYYPEDQITDRPERFL--------------------- 190 (292)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhC--------------CCCCCCCCCCCCCCCCHHHH---------------------
Confidence 5899999999999999999999877 34556778888888888887
Q ss_pred EEeeccccCCccccccccccccchhhh
Q psy3450 291 QYCFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
++|++|++++..+++|+||+..|.
T Consensus 191 ---~~EiiRe~~~~~l~~e~p~~~~v~ 214 (292)
T PRK00089 191 ---AAEIIREKLLRLLGDELPYSVAVE 214 (292)
T ss_pred ---HHHHHHHHHHhhCCccCCceEEEE
Confidence 789999999999999999999884
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=9.8e-22 Score=178.60 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=114.6
Q ss_pred EEEEeCcccchhHHHHHhhhcCC-CCcccccCCCCcCccccCCCcc-ccccceeEEEE--EE---CCeEEEEEEEeCCCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLES-RFPRFWLDGSSESPFCSGSGKY-DDMLAYKTTTI--LL---DGKRVKLQLWDTSGQ 134 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~-~~~~~~~~~~~~~~~~~~ig~~-~~tid~~~~~i--~i---~~~~v~l~i~Dt~G~ 134 (432)
+|+++|+++||||||+++|.... .+.. ......+.++.+.. ...+.+..+.+ .+ ++..+.++||||||+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSK----REMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCc----CCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 58999999999999999984321 1110 00111111111000 00013332222 22 667889999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC---
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM--- 211 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~--- 211 (432)
++|..++..+++++|++|+|||+++..+++.+..|..... .++|+++|+||+|+.+.+ ..+...++++.+++
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~ 152 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPS 152 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999888877776654332 458999999999985422 22233456666665
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cEEEeeccCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=9.3e-22 Score=181.05 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=117.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|.+|||||||++++ .++.+.. +.++.+ .....+.+++ +++.+||++|++.+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l-~~~~~~~----------~~~t~~-------~~~~~~~~~~--~~~~~~D~~G~~~~~ 75 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHML-KNDRLAQ----------HQPTQH-------PTSEELAIGN--IKFTTFDLGGHQQAR 75 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHH-hcCCCcc----------cCCccc-------cceEEEEECC--EEEEEEECCCCHHHH
Confidence 3489999999999999999997 3333321 112221 2223334443 678999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh--------
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-------- 208 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-------- 208 (432)
.++..+++++|++|+|+|+++++++.....|+.++.+.. .++|+++|+||+|+. +.++.+++.+...-
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~--~~~~~~~i~~~l~l~~~~~~~~ 153 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP--YAASEDELRYALGLTNTTGSKG 153 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc--CCCCHHHHHHHcCCCccccccc
Confidence 999999999999999999999999998888887765432 578999999999985 34556665543311
Q ss_pred ----cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 ----NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 ----~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
....+++|||++|.|+++++++|.+.
T Consensus 154 ~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 154 KVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 12369999999999999999999764
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=1.4e-21 Score=175.59 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=106.5
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch--
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT-- 139 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~-- 139 (432)
+|+++|++|||||||+++| .+..+... .+ . .++.+.....+.. ..+.++||||||+.....
T Consensus 2 ~i~~~G~~~~GKssli~~l-~~~~~~~~--------~~---~---~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL-TRAKPEVA--------PY---P---FTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred eEEEEcCCCCCHHHHHHHH-hcCCCccC--------CC---C---CcccceeEEEEcc--CceEEEEEECCCcCCccccC
Confidence 7899999999999999998 33322110 00 0 0111222222222 347889999999843110
Q ss_pred -------hhhhcccCceEEEEEEeCCCCCCh--hhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 140 -------IIRSYSRGAQGILLVYDITNKWSF--DGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 140 -------l~~~~~~~ad~iIlV~Dvt~~~Sf--~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
........+|++|+|+|+++..++ +....|+..+.....+.|+++|+||+|+...+.+.. ..++++..+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~ 142 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEG 142 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH--HHHhhhhcc
Confidence 000111236899999999987654 666778888876656799999999999965444332 455555567
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+++++||++|.|++++|+++.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHHh
Confidence 7999999999999999999999876
No 132
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.87 E-value=9.4e-22 Score=173.10 Aligned_cols=150 Identities=22% Similarity=0.370 Sum_probs=112.0
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
|+++|++|||||||++++ .+..+ ...+.++.+ +++ ..+..++ +.+.+||++|++.+..++.
T Consensus 2 i~i~G~~~~GKssl~~~l-~~~~~---------~~~~~~t~~-----~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~ 62 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVI-AGGQF---------SEDTIPTVG-----FNM--RKVTKGN--VTLKVWDLGGQPRFRSMWE 62 (159)
T ss_pred EEEEcCCCCCHHHHHHHH-ccCCC---------CcCccCCCC-----cce--EEEEECC--EEEEEEECCCCHhHHHHHH
Confidence 789999999999999997 33333 223334443 122 2333433 7899999999999999999
Q ss_pred hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHH-----HhcCCcEEE
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKNQMAFFE 215 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~~~~~~e 215 (432)
.+++++|++++|+|+++++++.....|+..+.... .++|+++|+||+|+.+... .++..... ....+++++
T Consensus 63 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 63 RYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEE
Confidence 99999999999999999988988877777765432 5789999999999865332 22222111 122367899
Q ss_pred EcCCCCCCHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSR 233 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~ 233 (432)
+||++|.|++++|++|.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999999875
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.4e-21 Score=197.67 Aligned_cols=220 Identities=22% Similarity=0.192 Sum_probs=147.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|.+|||||||+|+|+..+.... ....| ++.+.....+..++. .+.+|||||..++
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----------~~~~g---tt~~~~~~~~~~~~~--~~~liDT~G~~~~ 233 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-----------SDIAG---TTRDSIDIPFERNGK--KYLLIDTAGIRRK 233 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-----------CCCCC---ceECcEeEEEEECCc--EEEEEECCCcccc
Confidence 4568999999999999999999843332211 11112 223444455556664 5799999997654
Q ss_pred chhh-----------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 138 CTII-----------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 138 ~~l~-----------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
.... ..+++.+|++|+|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+. ....++..+..
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~ 309 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKD-EKTREEFKKEL 309 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCC-HHHHHHHHHHH
Confidence 3321 23678999999999999988776653 4444433 35899999999999621 11122222222
Q ss_pred -Hh----cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccC
Q psy3450 207 -IK----NQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSN 281 (432)
Q Consensus 207 -~~----~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~ 281 (432)
.. .+++++++||++|.|++++|+++.+.+........ +....+++............
T Consensus 310 ~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~------------------t~~ln~~l~~~~~~~~~p~~ 371 (429)
T TIGR03594 310 RRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIS------------------TSKLNRVLEEAVAAHPPPLV 371 (429)
T ss_pred HHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCC------------------HHHHHHHHHHHHHcCCCCCC
Confidence 22 24699999999999999999999987754332211 11222344333333333446
Q ss_pred CCceeEEEEEEeeccccCCccccccccccccchhh
Q psy3450 282 KGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSV 316 (432)
Q Consensus 282 ~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (432)
+|+..++||..|. ..-||.+.++.|++..++++-
T Consensus 372 ~~~~~k~~y~~q~-~~~pp~~~~~~n~~~~~~~~y 405 (429)
T TIGR03594 372 NGRRLKIKYATQV-GTNPPTFVLFGNRPELLPFSY 405 (429)
T ss_pred CCceeeEEEEECC-CCCCCEEEEEEcCcccCCHHH
Confidence 8999999999998 567999999999998887764
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=6.5e-21 Score=179.09 Aligned_cols=164 Identities=35% Similarity=0.499 Sum_probs=127.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| ....+...+.++++ ..+........+..+++.+|||+|+++|+.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRL----------VGDEFPEGYPPTIG-----NLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHH----------hcCcCcccCCCcee-----eeeEEEEEEeCCCEEEEEeecCCCHHHHHHH
Confidence 89999999999999999998 34444433444443 2444555555555889999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhh-HHHHHHHHHhhC-CCCcEEEEEECccCCCCc------------ccCHHHHHHHH
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDG-IDRWLKEVEEHA-PGVPKVLVGNRLHLAFNR------------TVTTREAEMYA 206 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~-l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r------------~v~~ee~~~~a 206 (432)
+..|+.+++++++|||.++..++.+ ...|..++.... .+.|+++|+||+|+...+ ....+.....+
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 9999999999999999999555555 499999999887 479999999999997653 33333333333
Q ss_pred Hhc---CCcEEEEcCC--CCCCHHHHHHHHHHHHhhhc
Q psy3450 207 IKN---QMAFFEVSPL--CDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 207 ~~~---~~~~~evSAk--tg~nI~elf~~L~~~i~~~~ 239 (432)
... ...++++|++ ++.+|+++|..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 322 3359999999 99999999999999986543
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=1.7e-21 Score=170.78 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=99.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc-----c
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-----R 136 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-----~ 136 (432)
||+++|++|||||||+++| .++.+ . +.++++ +.+.+ .+|||+|+. .
T Consensus 2 kv~liG~~~vGKSsL~~~l-~~~~~---------~--~~~t~~------------~~~~~-----~~iDt~G~~~~~~~~ 52 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL-QGEEI---------L--YKKTQA------------VEYND-----GAIDTPGEYVENRRL 52 (142)
T ss_pred eEEEECCCCCCHHHHHHHH-cCCcc---------c--ccccee------------EEEcC-----eeecCchhhhhhHHH
Confidence 8999999999999999997 22221 1 111111 11222 689999983 3
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~e 215 (432)
+..+.. .++++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +....++++++++..+. ++++
T Consensus 53 ~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 124 (142)
T TIGR02528 53 YSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFE 124 (142)
T ss_pred HHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEE
Confidence 444433 4799999999999999999876 3454432 249999999999964 44566777888888776 8999
Q ss_pred EcCCCCCCHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELS 232 (432)
Q Consensus 216 vSAktg~nI~elf~~L~ 232 (432)
+||++|.|++++|+++.
T Consensus 125 ~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 125 ISSVDEQGLEALVDYLN 141 (142)
T ss_pred EecCCCCCHHHHHHHHh
Confidence 99999999999999874
No 136
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=1e-20 Score=173.10 Aligned_cols=156 Identities=23% Similarity=0.369 Sum_probs=124.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|..|+|||||++++ ..+... ...|+. .+....+.+++ +.+.+||.+|++.+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l----------~~~~~~-~~~pT~-------g~~~~~i~~~~--~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRL----------KNGEIS-ETIPTI-------GFNIEEIKYKG--YSLTIWDLGGQESF 71 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHH----------HSSSEE-EEEEES-------SEEEEEEEETT--EEEEEEEESSSGGG
T ss_pred CcEEEEEEECCCccchHHHHHHh----------hhcccc-ccCccc-------ccccceeeeCc--EEEEEEeccccccc
Confidence 56789999999999999999998 222111 134444 45566666766 66899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHH------hc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAI------KN 209 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~------~~ 209 (432)
+.+|+.|++++|++|+|+|.++.+.+.+..+.+..+.... .++|++|++||.|+.+ ....+++..... ..
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~ 149 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKR 149 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSS
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCC
Confidence 9999999999999999999999999999888777776542 5799999999999854 355566554432 23
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+.++.|||++|.|+.|.|+||.+++
T Consensus 150 ~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 150 PWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp CEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 35689999999999999999999875
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=7.2e-21 Score=171.07 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=109.1
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc----cc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG----RF 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e----~~ 137 (432)
.|+++|++|||||||++++. +.... ... ..+ ++.+.....+.+++ ...+.+|||||+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~-~~~~~---v~~--------~~~---~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS-NAKPK---IAD--------YPF---TTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh-cCCcc---ccC--------CCc---cccCCcceEEEcCC-CCeEEEEecCcccCccccc
Confidence 58999999999999999982 22110 000 000 01122222233333 2478999999974 22
Q ss_pred chhhhhcc---cCceEEEEEEeCCCC-CChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHh-c
Q psy3450 138 CTIIRSYS---RGAQGILLVYDITNK-WSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-N 209 (432)
Q Consensus 138 ~~l~~~~~---~~ad~iIlV~Dvt~~-~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-~ 209 (432)
..+...++ +.+|++++|+|++++ ++++.+..|.+++.... .+.|+++|+||+|+.+...+ .+....+..+ .
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~ 144 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELW 144 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCC
Confidence 23334443 469999999999999 89999999999887764 36899999999999654433 3444555555 3
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
+.+++++||+++.|++++|+++.+.
T Consensus 145 ~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHhh
Confidence 6789999999999999999999864
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.85 E-value=2.7e-20 Score=162.56 Aligned_cols=155 Identities=34% Similarity=0.471 Sum_probs=118.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|.+|+|||||++++.... ++. .+.++.+ .++....+..++..+.+.+||++|++++..+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 66 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT---------EYKPGTT-----RNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI 66 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC---------cCCCCce-----eeeeEEEEEECCEEEEEEEEECCCcccchHH
Confidence 799999999999999999983322 321 1122222 3555555677777788999999999999999
Q ss_pred hhhcccCceEEEEEEeCCCC-CChhhHH-HHHHHHHhhCC-CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 141 IRSYSRGAQGILLVYDITNK-WSFDGID-RWLKEVEEHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~-~Sf~~l~-~~l~~i~~~~~-~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
+..+.++++.++.++|+... .++.+.. .|...+..... +.|+++|+||+|+...+ ...+....+......+++++|
T Consensus 67 ~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s 145 (161)
T TIGR00231 67 RRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLS 145 (161)
T ss_pred HHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEee
Confidence 98899999999999999887 7777764 77777776654 79999999999996533 333333334444456899999
Q ss_pred CCCCCCHHHHHHHH
Q psy3450 218 PLCDFNIRESFTEL 231 (432)
Q Consensus 218 Aktg~nI~elf~~L 231 (432)
|++|.|++++|++|
T Consensus 146 a~~~~gv~~~~~~l 159 (161)
T TIGR00231 146 AETGKNIDSAFKIV 159 (161)
T ss_pred cCCCCCHHHHHHHh
Confidence 99999999999986
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.85 E-value=9.5e-21 Score=171.14 Aligned_cols=151 Identities=23% Similarity=0.341 Sum_probs=112.5
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||++++ .+..+. ...++.| +....+..++ ..+.+||++|++.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l-~~~~~~----------~~~~t~g-------~~~~~i~~~~--~~~~~~D~~G~~~~ 71 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQL-ASEDIS----------HITPTQG-------FNIKTVQSDG--FKLNVWDIGGQRAI 71 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHH-hcCCCc----------ccCCCCC-------cceEEEEECC--EEEEEEECCCCHHH
Confidence 33689999999999999999997 222211 1223333 2233445555 56899999999998
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-----
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ----- 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~----- 210 (432)
...+..+++++|++++|+|+++..++.....|+..+.... .++|+++++||+|+.+.. ..++ +.+..+
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~ 146 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLR 146 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccC
Confidence 8888899999999999999999988988877776665432 469999999999985432 2222 233333
Q ss_pred ---CcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 211 ---MAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 211 ---~~~~evSAktg~nI~elf~~L~~ 233 (432)
.+++++||++|.|++++|++|++
T Consensus 147 ~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 147 DRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 24789999999999999999975
No 140
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=5.9e-20 Score=185.98 Aligned_cols=253 Identities=20% Similarity=0.161 Sum_probs=171.5
Q ss_pred EEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCcc
Q psy3450 20 LLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPF 99 (432)
Q Consensus 20 ~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~ 99 (432)
++.+.||.|-..+++.....++ . . ......+....+||+++|.||||||||+|++..+++.. .
T Consensus 144 ~ISA~Hg~Gi~dLld~v~~~l~-~-~----e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-----------v 206 (444)
T COG1160 144 PISAEHGRGIGDLLDAVLELLP-P-D----EEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVI-----------V 206 (444)
T ss_pred EeehhhccCHHHHHHHHHhhcC-C-c----ccccccccCCceEEEEEeCCCCCchHHHHHhccCceEE-----------e
Confidence 4467777777776666655332 0 0 00111111367999999999999999999984444432 3
Q ss_pred ccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh-----------hhcccCceEEEEEEeCCCCCChhhHHH
Q psy3450 100 CSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII-----------RSYSRGAQGILLVYDITNKWSFDGIDR 168 (432)
Q Consensus 100 ~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~-----------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~ 168 (432)
++..|++ .|.....++.+++. +.++||+|..+-.... ...+..+|++++|.|++.+-+-++. +
T Consensus 207 ~~~aGTT---RD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ 280 (444)
T COG1160 207 SDIAGTT---RDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-R 280 (444)
T ss_pred cCCCCcc---ccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-H
Confidence 3444533 45555666778866 4899999964322211 1346789999999999988655443 3
Q ss_pred HHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh----c-CCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 169 WLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK----N-QMAFFEVSPLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 169 ~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~----~-~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
....+.+ .+.+++||.||||+.++++...++.+...+. . .++.+.+||++|.+++++|+.+.+..........
T Consensus 281 ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 281 IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccC
Confidence 3344443 3579999999999976654555555433322 2 3589999999999999999999887754433222
Q ss_pred cccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEEEEeeccccCCccccccccccccchhh
Q psy3450 244 LWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSV 316 (432)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (432)
+...-+.++......+....+|+.+++||..|. ...||.+.++.|++..++|+=
T Consensus 359 ------------------Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~-~~~PP~fvlf~N~~~~~~~sY 412 (444)
T COG1160 359 ------------------TSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQV-STNPPTFVLFGNRPKALHFSY 412 (444)
T ss_pred ------------------HHHHHHHHHHHHHhCCCCccCCceEEEEEEecC-CCCCCEEEEEecchhhCchHH
Confidence 222334444444444455678999999999999 789999999999999999875
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=5.7e-20 Score=163.65 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=101.8
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
-|+++|++|||||||+++| .+... ..+.....++ .+++.....+.+++ ...+.+|||||+++|....
T Consensus 2 ~i~i~G~~~~GKssl~~~l-~~~~~------~~~~~~~~~~-----~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKAL-TGIET------DRLPEEKKRG-----ITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHH-hCccc------ccchhhhccC-----ceEEeeeEEEEecC-CcEEEEEECCChHHHHHHH
Confidence 5889999999999999998 22110 0011111111 12233334444542 3578999999999887766
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc--ccCHHHHHHHHHh---cCCcEEEE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR--TVTTREAEMYAIK---NQMAFFEV 216 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r--~v~~ee~~~~a~~---~~~~~~ev 216 (432)
..+++++|++++|+|+++... .+...++..+... ...|+++|+||+|+..+. ....++..++.+. .+.+++++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIM-PQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred HhhhhcCCEEEEEEECCCCcc-HhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 778899999999999987321 1122222222222 224999999999996532 1122344444444 45799999
Q ss_pred cCCCCCCHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSR 233 (432)
Q Consensus 217 SAktg~nI~elf~~L~~ 233 (432)
||++|.|++++|+.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998864
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=5.3e-20 Score=171.58 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=110.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.+..++|+|+|++|||||||++++.....+.. +.+..+++.....+.+++. ..+.+|||+|..+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~ 101 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAE---------------DQLFATLDPTTRRLRLPDG-REVLLTDTVGFIR 101 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccC---------------CccceeccceeEEEEecCC-ceEEEeCCCcccc
Confidence 35568999999999999999999833221110 0011122333444445443 3689999999732
Q ss_pred ---------cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 137 ---------FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 137 ---------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
+...+ ..+.++|++++|+|++++.++.++..|.+.+.... .++|+++|+||+|+....... ..+
T Consensus 102 ~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~ 175 (204)
T cd01878 102 DLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERL 175 (204)
T ss_pred CCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHh
Confidence 11111 23578999999999999999988888887776654 468999999999986533221 344
Q ss_pred HhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 207 IKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 207 ~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
...+.+++++||++|.|++++|++|.+.
T Consensus 176 ~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 176 EAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred hcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 4556789999999999999999999865
No 143
>KOG0073|consensus
Probab=99.83 E-value=1.3e-19 Score=159.47 Aligned_cols=160 Identities=19% Similarity=0.338 Sum_probs=127.0
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..++|+++|..|+||||++++| ... ......|+. -|..+++.+++ +++++||.+||.
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl----------~~~-~~~~i~pt~-------gf~Iktl~~~~--~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKL----------LGE-DTDTISPTL-------GFQIKTLEYKG--YTLNIWDVGGQK 71 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHh----------cCC-CccccCCcc-------ceeeEEEEecc--eEEEEEEcCCcc
Confidence 3445799999999999999999997 221 122333444 57777777766 778999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHh-hC-CCCcEEEEEECccCCCCcccCHHH------HHHHHH
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE-HA-PGVPKVLVGNRLHLAFNRTVTTRE------AEMYAI 207 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~-~~-~~iPiILVgNK~DL~~~r~v~~ee------~~~~a~ 207 (432)
.++..|+.||..+|++|+|+|.+|+..|++....+..+.. .. .+.|++|++||.|+.. .+..++ .+.+++
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~k 149 (185)
T KOG0073|consen 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAK 149 (185)
T ss_pred hhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhcc
Confidence 9999999999999999999999999988887655555432 22 5689999999999962 233332 345667
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
...++++-|||.+|+++.+-|+||+..+..
T Consensus 150 s~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 150 SHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 778899999999999999999999999866
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.3e-19 Score=181.79 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=117.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcc-ccccceeEEEEEECCeEEEEEEEeCCCCcc---
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY-DDMLAYKTTTILLDGKRVKLQLWDTSGQGR--- 136 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~-~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~--- 136 (432)
..|.|||.||||||||++++... +. .++.| .+|+......+.+++ ...+.+||+||..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a-~~---------------~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAA-KP---------------KIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGAS 221 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcC-CC---------------ccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCC
Confidence 36899999999999999998221 10 01111 123344444444532 24579999999742
Q ss_pred -cchhhhh---cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC---CCcEEEEEECccCCCCcccCHHHHHHHHHhc
Q psy3450 137 -FCTIIRS---YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP---GVPKVLVGNRLHLAFNRTVTTREAEMYAIKN 209 (432)
Q Consensus 137 -~~~l~~~---~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~---~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~ 209 (432)
...+... ++++++++|+|+|+++.++++++..|..++..+.+ +.|++||+||+|+.+...+..++.+.+++..
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~ 301 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL 301 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc
Confidence 2223333 45679999999999998899999999999987653 6899999999999765544444555566667
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+.+++++||+++.||+++|++|.+.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999988754
No 145
>KOG1707|consensus
Probab=99.82 E-value=1.2e-20 Score=194.05 Aligned_cols=247 Identities=20% Similarity=0.231 Sum_probs=173.9
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..++|+++|+.||||||||-.+ ..+.|+.. .+...+....| ..+..+.+...|.||+..+.-+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL-~~eef~~~-VP~rl~~i~IP---------------advtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSL-LEEEFVDA-VPRRLPRILIP---------------ADVTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred cceEEEEECCCCccHHHHHHHH-Hhhhcccc-ccccCCccccC---------------CccCcCcCceEEEecccccchh
Confidence 4689999999999999999997 66655433 22222222112 1123344557899998666555
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHH-HHHHHHhcC-C-
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTRE-AEMYAIKNQ-M- 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee-~~~~a~~~~-~- 211 (432)
.....-++.||++.+||+++++++.+.+ .+|+..+++.. .++||||||||+|+.+....+.+. ...+..++. +
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE 150 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE 150 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH
Confidence 5556778999999999999999999999 88999999887 689999999999997655443343 444555543 3
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEEE
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQ 291 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~~ 291 (432)
..|+|||++..|+.|+|....+.+++ ...|+++.+.-.-+.++ ++.+.|+|+
T Consensus 151 tciecSA~~~~n~~e~fYyaqKaVih-------------Pt~PLyda~~qelkp~~---v~al~RIFk------------ 202 (625)
T KOG1707|consen 151 TCIECSALTLANVSELFYYAQKAVIH-------------PTSPLYDAEEQELKPRC---VKALKRIFK------------ 202 (625)
T ss_pred HHHhhhhhhhhhhHhhhhhhhheeec-------------cCccccccccccccHHH---HHHHHHHHh------------
Confidence 68999999999999999999998866 34556665533333322 122233333
Q ss_pred EeeccccCCccccccccccccchhh----hhHhhhhhhhhhcccceeeccCCCChHHHHHhhh
Q psy3450 292 YCFAGLVRPSVDVNKNKYNLLSFSV----ISLQELCCRAIVARTTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (432)
.|+...-----+-.+|+++--+|.- ..+.++..-.-..|++++.-++|.||+||+.|.-
T Consensus 203 i~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 203 ISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred hhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 3333333333344455555555543 6777777778888999999999999999999953
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=6.2e-20 Score=170.57 Aligned_cols=150 Identities=21% Similarity=0.252 Sum_probs=98.5
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC----
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG---- 133 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G---- 133 (432)
...+||+++|++|||||||+|+| .+..+. ....++. .+....+..+ .+.+|||+|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l-~~~~~~---------~~~~~~~-------t~~~~~~~~~----~~~l~Dt~G~~~~ 65 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVREL-TGKKVR---------VGKRPGV-------TRKPNHYDWG----DFILTDLPGFGFM 65 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCCCc---------cCCCCce-------eeCceEEeec----ceEEEeCCccccc
Confidence 34579999999999999999998 222222 1111222 2222223333 479999999
Q ss_pred -------Ccccchhhhhccc----CceEEEEEEeCCCCCChhhHHHH------------HHHHHhhCCCCcEEEEEECcc
Q psy3450 134 -------QGRFCTIIRSYSR----GAQGILLVYDITNKWSFDGIDRW------------LKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 134 -------~e~~~~l~~~~~~----~ad~iIlV~Dvt~~~Sf~~l~~~------------l~~i~~~~~~iPiILVgNK~D 190 (432)
++.++.++..|++ .++++++|+|.++...+. ..| +..+.. .++|+++|+||+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~D 141 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMD 141 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcc
Confidence 5666666666654 357788888865432210 222 222222 4689999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCC---------cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 191 LAFNRTVTTREAEMYAIKNQM---------AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 191 L~~~r~v~~ee~~~~a~~~~~---------~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+.+.+ .+...++++.+++ +++++||++| ||+++|++|.+.+.
T Consensus 142 l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 142 KIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred ccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 96433 3445566666654 5899999999 99999999998763
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=2.9e-19 Score=158.30 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=106.6
Q ss_pred EeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch-----
Q psy3450 65 LVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT----- 139 (432)
Q Consensus 65 vvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~----- 139 (432)
++|++|||||||++++ .+..+.. ...++ ++++.....+.+++ ..+.+|||||++.+..
T Consensus 1 l~G~~~~GKssl~~~~-~~~~~~~---------~~~~~-----~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~ 63 (158)
T cd01879 1 LVGNPNVGKTTLFNAL-TGARQKV---------GNWPG-----VTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDE 63 (158)
T ss_pred CCCCCCCCHHHHHHHH-hcCcccc---------cCCCC-----cccccceEEEeeCC--eEEEEEECCCccccCCCChhH
Confidence 6899999999999998 2222211 01111 22355556666776 4689999999987654
Q ss_pred -hhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 140 -IIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 140 -l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
++..++. ++|++|+|+|+++++.. ..|...+... ++|+++|+||+|+.+.+.+.. +...+++.++.+++++
T Consensus 64 ~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~i 137 (158)
T cd01879 64 KVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPT 137 (158)
T ss_pred HHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEE
Confidence 3455664 99999999999886543 3444444433 589999999999976544433 3456777788999999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i 235 (432)
||++|.|++++|+.+.+.+
T Consensus 138 Sa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 138 SARKGEGIDELKDAIAELA 156 (158)
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 148
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=7.8e-19 Score=182.53 Aligned_cols=219 Identities=22% Similarity=0.200 Sum_probs=143.9
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..++|+++|.+|+|||||+|+|+..+.... ....| ++.+.....+..++. .+.+|||+|..+.
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-----------~~~~g---tt~~~~~~~~~~~~~--~~~lvDT~G~~~~ 234 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-----------SDIAG---TTRDSIDTPFERDGQ--KYTLIDTAGIRRK 234 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-----------cCCCC---ceEEEEEEEEEECCe--eEEEEECCCCCCC
Confidence 4579999999999999999999843332211 11112 223444444455554 4689999996432
Q ss_pred chh----------h-hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH-HH
Q psy3450 138 CTI----------I-RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE-MY 205 (432)
Q Consensus 138 ~~l----------~-~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~-~~ 205 (432)
..+ . ..+++.+|++|+|+|+++..+.++.. ++..+.+ .+.|+++|+||+|+.++.. .++.. .+
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~--~~~~~~~~ 309 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKT--MEEFKKEL 309 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHH--HHHHHHHH
Confidence 211 1 23678999999999999987776653 3344433 3579999999999963221 11221 22
Q ss_pred HHh----cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccC
Q psy3450 206 AIK----NQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSN 281 (432)
Q Consensus 206 a~~----~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~ 281 (432)
... ..++++++||++|.|++++|+.+.+.......... +....+++............
T Consensus 310 ~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~------------------t~~ln~~l~~~~~~~~~p~~ 371 (435)
T PRK00093 310 RRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRIS------------------TSVLNRVLEEAVERHPPPLV 371 (435)
T ss_pred HHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCC------------------hHHHHHHHHHHHHcCCCCCC
Confidence 222 24699999999999999999999887654332211 11122333333333333446
Q ss_pred CCceeEEEEEEeeccccCCccccccccccccchhh
Q psy3450 282 KGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSV 316 (432)
Q Consensus 282 ~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (432)
.|+.+++||..|.. .-+|.+.+..|++..++.+-
T Consensus 372 ~~~~~k~~~~~q~~-~~pp~f~~~~n~~~~~~~~y 405 (435)
T PRK00093 372 KGRRLKIKYATQVG-TNPPTFVLFVNDPELLPFSY 405 (435)
T ss_pred CCeeeeEEEEEcCC-CCCCEEEEEeCCcccCCHHH
Confidence 89999999999995 57999999999998777654
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=4.6e-19 Score=179.15 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=109.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc--
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-- 135 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-- 135 (432)
+..++|+++|.+|||||||+|+|...+.+.. ....+|.++....+.+++. ..+.||||+|..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~---------------~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAA---------------DQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRD 250 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeec---------------cCCccccCCEEEEEEeCCC-ceEEEEecCccccc
Confidence 4568999999999999999999832211100 1112334666677777432 468999999972
Q ss_pred -------ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 136 -------RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 136 -------~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
.|...+ ..++++|++|+|+|++++.+++++..|...+.... .+.|+++|+||+|+.+... .....
T Consensus 251 l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~- 323 (351)
T TIGR03156 251 LPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE- 323 (351)
T ss_pred CCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-
Confidence 222222 24789999999999999998888877776666543 4689999999999964322 11111
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
....+++++||++|.|++++++.|.+.
T Consensus 324 ~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 223468999999999999999998764
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.80 E-value=1e-18 Score=150.35 Aligned_cols=153 Identities=41% Similarity=0.698 Sum_probs=113.7
Q ss_pred EeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhhhc
Q psy3450 65 LVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSY 144 (432)
Q Consensus 65 vvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~ 144 (432)
++|++|+|||||++++....... ....++. +++........+....+.+||++|+..+......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~---------~~~~~t~------~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP---------EEYETTI------IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC---------cccccch------hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHH
Confidence 68999999999999983222211 1111111 25555666666778899999999998888777888
Q ss_pred ccCceEEEEEEeCCCCCChhhHHHH--HHHHHhhCCCCcEEEEEECccCCCCcccCHHH-HHHHHHhcCCcEEEEcCCCC
Q psy3450 145 SRGAQGILLVYDITNKWSFDGIDRW--LKEVEEHAPGVPKVLVGNRLHLAFNRTVTTRE-AEMYAIKNQMAFFEVSPLCD 221 (432)
Q Consensus 145 ~~~ad~iIlV~Dvt~~~Sf~~l~~~--l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee-~~~~a~~~~~~~~evSAktg 221 (432)
++.+|++++|+|++++.++..+..| .........+.|+++|+||+|+.......... ..........+++++|++++
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTG 145 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 9999999999999999999888777 22233344679999999999986543332222 33445556789999999999
Q ss_pred CCHHHHHHHHH
Q psy3450 222 FNIRESFTELS 232 (432)
Q Consensus 222 ~nI~elf~~L~ 232 (432)
.|+++++++|.
T Consensus 146 ~~i~~~~~~l~ 156 (157)
T cd00882 146 ENVEELFEELA 156 (157)
T ss_pred CChHHHHHHHh
Confidence 99999999985
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=3.3e-19 Score=165.26 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=104.3
Q ss_pred EEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCc---cccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESP---FCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~---~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+|+++|+++||||||+++|+.. +.|...+........ ...+.| +.+..+...++.+.+.+.+|||||+++|
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g-----~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG-----ITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc-----cccccceeEEEECCEEEEEEECCCcHHH
Confidence 7999999999999999998432 333322110000000 011112 2333334444555678999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc-cCHHHHHHHHH-------hc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT-VTTREAEMYAI-------KN 209 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~-v~~ee~~~~a~-------~~ 209 (432)
..++..+++++|++++|||+++.. +.....|+..+.. .++|+++|+||+|+...+. ...+++.++.. +.
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 999999999999999999998752 3444455555443 3689999999999964332 12334444442 23
Q ss_pred CCcEEEEcCCCCCCHHHH
Q psy3450 210 QMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 210 ~~~~~evSAktg~nI~el 227 (432)
+++++++||++|.|+.+.
T Consensus 156 ~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 156 DFPVLYASAKNGWASLNL 173 (194)
T ss_pred ccCEEEeehhcccccccc
Confidence 678999999999887433
No 152
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=2.3e-18 Score=189.12 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=148.7
Q ss_pred EEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCcc
Q psy3450 20 LLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPF 99 (432)
Q Consensus 20 ~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~ 99 (432)
.+...+|.|...++......++. .... ......+..+||+++|++|||||||+|+|...+... .
T Consensus 415 ~iSA~~g~GI~eLl~~i~~~l~~--~~~~---~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-----------v 478 (712)
T PRK09518 415 PISAMHGRGVGDLLDEALDSLKV--AEKT---SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV-----------V 478 (712)
T ss_pred EEECCCCCCchHHHHHHHHhccc--cccc---ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc-----------c
Confidence 34566666665555554443322 0000 000012345899999999999999999983322110 0
Q ss_pred ccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc----------cchhh-hhcccCceEEEEEEeCCCCCChhhHHH
Q psy3450 100 CSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR----------FCTII-RSYSRGAQGILLVYDITNKWSFDGIDR 168 (432)
Q Consensus 100 ~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~----------~~~l~-~~~~~~ad~iIlV~Dvt~~~Sf~~l~~ 168 (432)
....| +|.+.....+.+++.. +.+|||+|..+ |..+. ..+++.+|++|+|+|+++..+++++.
T Consensus 479 ~~~~g---tT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~- 552 (712)
T PRK09518 479 NDLAG---TTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK- 552 (712)
T ss_pred CCCCC---CCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-
Confidence 01111 2235555566677765 56999999642 22221 23468999999999999998888765
Q ss_pred HHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH-Hhc----CCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcc
Q psy3450 169 WLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA-IKN----QMAFFEVSPLCDFNIRESFTELSRRALQRNGMER 243 (432)
Q Consensus 169 ~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a-~~~----~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~ 243 (432)
++..+.. .+.|++||+||+|+.++.. .+..++.. ..+ ..+++++||++|.|++++|+.+.+.+.+......
T Consensus 553 i~~~~~~--~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~ 628 (712)
T PRK09518 553 VMSMAVD--AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIP 628 (712)
T ss_pred HHHHHHH--cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 4444443 3589999999999964321 12222212 121 3477999999999999999999998754332111
Q ss_pred cccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEEEEEeeccccCCccccccc
Q psy3450 244 LWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKN 307 (432)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~~~~~~~~~~~~~~~~~~ 307 (432)
+...-++++...........+|+..++||.+|. ..-||.+-++.|
T Consensus 629 ------------------T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~-~~~Pp~f~~f~~ 673 (712)
T PRK09518 629 ------------------TGKLNAFLGKIQAEHPHPLRGGKQPRILFATQA-STRPPRFVIFTT 673 (712)
T ss_pred ------------------hHHHHHHHHHHHhhCCCCccCCeeeeEEEEECC-CCCCCEEEEEcC
Confidence 222334444433333344478999999999888 456666665544
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=9.7e-19 Score=156.71 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=103.1
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCcccchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~~~l 140 (432)
.|+++|++|+|||||+++| ....+... ...+. +.+.....+..+ +....+.+|||+|++.|..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l-~~~~~~~~---------~~~~~-----t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKI-RKTNVAAG---------EAGGI-----TQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHH-Hhcccccc---------cCCCe-----EEeeccEEEecccCCcceEEEEeCCCcHHHHHH
Confidence 4899999999999999998 33333211 00011 112222233333 23567899999999999888
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC-HHHHHHHHH----h--cCCcE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT-TREAEMYAI----K--NQMAF 213 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~-~ee~~~~a~----~--~~~~~ 213 (432)
+..++..+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+....... .++...+.. . ..+++
T Consensus 67 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd01887 67 RARGASLTDIAILVVAADDGVMPQT-IEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQI 143 (168)
T ss_pred HHHHHhhcCEEEEEEECCCCccHHH-HHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcE
Confidence 8888999999999999988543222 222233333 458999999999986432111 111111111 1 13589
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q psy3450 214 FEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i 235 (432)
+++||++|.|+++++++|.+..
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 144 VPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEeecccCCCHHHHHHHHHHhh
Confidence 9999999999999999998765
No 154
>KOG1673|consensus
Probab=99.80 E-value=2.9e-19 Score=155.75 Aligned_cols=167 Identities=20% Similarity=0.428 Sum_probs=138.9
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
..-.+||-++|++.+|||||+-.+ ++ +..+..+..+.| +.+..+++.+.+..+.+.|||.+|+++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkY-V~---------~~~de~~~q~~G-----vN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKY-VQ---------NEYDEEYTQTLG-----VNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred cceEEEEEeecccccCceeeehhh-hc---------chhHHHHHHHhC-----ccceeeEEEecceEEEEEEEecCCcHh
Confidence 345689999999999999999996 33 333334444555 689999999999999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC-----cccCHHHHHHHHHhcCC
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN-----RTVTTREAEMYAIKNQM 211 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~-----r~v~~ee~~~~a~~~~~ 211 (432)
+..+.+....++-+++|+||++.++++..+.+|+.+.+..+...--|+||+|.|+--. .+.-..+++.+|+.+++
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA 161 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999887754444788999996211 11112357788999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+.|.+|+..+.||+++|..+.-.+++-
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHHhCC
Confidence 999999999999999999998888653
No 155
>KOG0096|consensus
Probab=99.80 E-value=1.5e-19 Score=162.50 Aligned_cols=171 Identities=22% Similarity=0.469 Sum_probs=143.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+|++++|+.|.|||++++++ ..+.++..+.+++| ++.......-+...+++..|||+|+|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~----------ltgeFe~~y~at~G-----v~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRH----------LTGEFEKTYPATLG-----VEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred cceEEEEEecCCcccccchhhhh----------hcccceecccCcce-----eEEeeeeeecccCcEEEEeeecccceee
Confidence 46789999999999999999998 77778887888887 5555555545555799999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
..+...||-.+.+.|++||++..-.+.++.+|...+.+.+.++||+++|||.|... +++. .....+-+..++.|+++|
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-r~~k-~k~v~~~rkknl~y~~iS 150 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-RKVK-AKPVSFHRKKNLQYYEIS 150 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-cccc-cccceeeecccceeEEee
Confidence 99999999999999999999999999999999999999999999999999999753 3322 222334556778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcccc
Q psy3450 218 PLCDFNIRESFTELSRRALQRNGMERLW 245 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~~~~~~ 245 (432)
|+.+.|.+.-|.++++.+......+-..
T Consensus 151 aksn~NfekPFl~LarKl~G~p~Lefva 178 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLARKLTGDPSLEFVA 178 (216)
T ss_pred cccccccccchHHHhhhhcCCCCeEEEe
Confidence 9999999999999999997766555443
No 156
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=9.8e-19 Score=178.85 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=131.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch--
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT-- 139 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~-- 139 (432)
.|.|||.||||||||+|++. +.+. ... . ...+|.....-.+..++ ...+.|+||||..+-..
T Consensus 161 dValVG~PNaGKSTLln~Lt-~~k~-~vs----------~---~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~ 224 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS-AAKP-KVA----------D---YPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEG 224 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh-CCcc-ccc----------C---CCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccch
Confidence 69999999999999999982 2211 100 0 01122333333444433 23579999999753211
Q ss_pred --hh---hhcccCceEEEEEEeCC---CCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 140 --II---RSYSRGAQGILLVYDIT---NKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 140 --l~---~~~~~~ad~iIlV~Dvt---~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
+. ...++++|++++|+|++ +.+.++++..|+.++..+. .+.|++||+||+|+.....+ .+....+.+.
T Consensus 225 ~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~ 303 (390)
T PRK12298 225 AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEA 303 (390)
T ss_pred hhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHH
Confidence 11 13468899999999998 5567788888888887754 36899999999998643332 3344455555
Q ss_pred cC--CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCcee
Q psy3450 209 NQ--MAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHL 286 (432)
Q Consensus 209 ~~--~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~ 286 (432)
.+ .+++.+||+++.|++++++.|.+.+. ..+++++.+..++...+|+
T Consensus 304 ~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~--------------~~~~~~~~~~~td~~~~~~----------------- 352 (390)
T PRK12298 304 LGWEGPVYLISAASGLGVKELCWDLMTFIE--------------ENPREEAEEAEAPEKVEFM----------------- 352 (390)
T ss_pred hCCCCCEEEEECCCCcCHHHHHHHHHHHhh--------------hCcccCCcccccCccHHHH-----------------
Confidence 44 47899999999999999999998872 2345567777777777777
Q ss_pred EEEEEEeeccccCCccccc
Q psy3450 287 LTYFQYCFAGLVRPSVDVN 305 (432)
Q Consensus 287 ~~y~~~~~~~~~~~~~~~~ 305 (432)
++|+|||++...
T Consensus 353 -------~~EiiRE~~~~~ 364 (390)
T PRK12298 353 -------WDDYHREQLEEV 364 (390)
T ss_pred -------HHHHHHHHhhcc
Confidence 788999998754
No 157
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=9.2e-19 Score=157.54 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=100.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc----
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF---- 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~---- 137 (432)
||+++|.+|||||||+|++. +. +. . ......+.+++. .+|||||+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~-~~--------~--------------~~~~~~v~~~~~----~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GN-YT--------L--------------ARKTQAVEFNDK----GDIDTPGEYFSHPRW 54 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CC-Cc--------c--------------CccceEEEECCC----CcccCCccccCCHHH
Confidence 79999999999999999972 11 10 0 001111222332 26999997322
Q ss_pred -chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC--cEE
Q psy3450 138 -CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM--AFF 214 (432)
Q Consensus 138 -~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~--~~~ 214 (432)
..+. ..++++|++|+|+|+++.+++. ..|+..+ ..+.|+++++||+|+.+ ...+.+.+++++.++ +++
T Consensus 55 ~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~ 125 (158)
T PRK15467 55 YHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIF 125 (158)
T ss_pred HHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEE
Confidence 2222 3468999999999999988764 3455543 24579999999999854 345667777777775 899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.|++++|+++.+.+.+..
T Consensus 126 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 126 ELNSHDPQSVQQLVDYLASLTKQEE 150 (158)
T ss_pred EEECCCccCHHHHHHHHHHhchhhh
Confidence 9999999999999999988875543
No 158
>KOG3883|consensus
Probab=99.79 E-value=2.6e-18 Score=149.45 Aligned_cols=170 Identities=26% Similarity=0.374 Sum_probs=138.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e~~ 137 (432)
...||+++|..+||||+||.++..++..+. .+..++++ |.+...++.+ |..-++.|+||+|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~--------~e~~pTiE------DiY~~svet~rgarE~l~lyDTaGlq~~ 73 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPG--------TELHPTIE------DIYVASVETDRGAREQLRLYDTAGLQGG 73 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCC--------Cccccchh------hheeEeeecCCChhheEEEeecccccCc
Confidence 457999999999999999999855544432 23455664 6666666554 44667999999998777
Q ss_pred -chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 138 -CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 138 -~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
..+-+.|+.-+|+++||||..|++||+.+..+-.+|.+.. ..+||++++||.|+.+++++..+-+..||+.-.+..+
T Consensus 74 ~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~ 153 (198)
T KOG3883|consen 74 QQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLW 153 (198)
T ss_pred hhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEE
Confidence 5566789999999999999999999998765555555544 4699999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcCCc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNGME 242 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~~~ 242 (432)
|++|.+...+-|.|..++..+.+.....
T Consensus 154 eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 154 EVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEeccchhhhhHHHHHHHhccCCcccc
Confidence 9999999999999999998886644433
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=2.8e-18 Score=171.96 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=112.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcc-ccccceeEEEEEECCeEEEEEEEeCCCCccc--
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY-DDMLAYKTTTILLDGKRVKLQLWDTSGQGRF-- 137 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~-~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~-- 137 (432)
..|++||.+|||||||++++... +. .++.| .+|.......+.+++ ..++.||||||..+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~-~~---------------~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAA-KP---------------KIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGAS 220 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcC-Cc---------------cccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCc
Confidence 46999999999999999998221 11 00110 122233334444544 356799999997532
Q ss_pred --chhhhhc---ccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 138 --CTIIRSY---SRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 138 --~~l~~~~---~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
..+...| +++++++|+|+|+++. ++++++..|.+++..+. .+.|++||+||+|+..... ..+..+.++
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~ 299 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELK 299 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHH
Confidence 2344444 4579999999999987 67888888988887654 4689999999999965432 234455666
Q ss_pred HhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 207 IKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 207 ~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+..+.+++++||+++.||+++++++.+.+
T Consensus 300 ~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 300 KALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 67778999999999999999999998765
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=1.3e-18 Score=156.80 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=103.9
Q ss_pred EeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc----cchh
Q psy3450 65 LVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR----FCTI 140 (432)
Q Consensus 65 vvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~----~~~l 140 (432)
++|++|||||||++++. +..+.. . .+ . .+|.+.....+.+++ ...+.+|||||..+ ...+
T Consensus 1 iiG~~~~GKStll~~l~-~~~~~~---~-----~~---~---~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALT-NAKPKV---A-----NY---P---FTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHh-cCCccc---c-----CC---C---ceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCc
Confidence 58999999999999982 222100 0 00 0 011122222333441 34579999999732 2222
Q ss_pred h---hhcccCceEEEEEEeCCCC------CChhhHHHHHHHHHhhC--------CCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 141 I---RSYSRGAQGILLVYDITNK------WSFDGIDRWLKEVEEHA--------PGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 141 ~---~~~~~~ad~iIlV~Dvt~~------~Sf~~l~~~l~~i~~~~--------~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
. ..+++++|++++|+|+++. .+++++..|..++.... .+.|+++|+||+|+...+........
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 144 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVR 144 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHH
Confidence 2 2346789999999999988 57888888888876543 36899999999999654443333223
Q ss_pred HHHHhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 204 MYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 204 ~~a~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
......+..++++||+++.|++++++++.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 3444456789999999999999999998764
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=3.4e-18 Score=177.61 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=114.7
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+|+|.... ... .....| +|.++....+.+++. .+.+|||+|+.+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~-~ai----------vs~~pg---tTrd~~~~~i~~~g~--~v~l~DTaG~~~ 263 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQD-RAI----------VSDIKG---TTRDVVEGDFELNGI--LIKLLDTAGIRE 263 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCC-Ccc----------cCCCCC---cEEEEEEEEEEECCE--EEEEeeCCCccc
Confidence 3456899999999999999999983221 110 001112 334666777778774 468999999865
Q ss_pred cchh--------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 137 FCTI--------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 137 ~~~l--------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
+... ...+++++|++|+|||++++.++++. |+..+.. .+.|+++|+||+|+... +...+++.
T Consensus 264 ~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~------~~~~~~~~ 333 (442)
T TIGR00450 264 HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN------SLEFFVSS 333 (442)
T ss_pred chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc------chhhhhhh
Confidence 5432 23578999999999999999888765 7776653 35899999999999542 22345667
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++.+++++||++ .||+++|+.|.+.+.+.
T Consensus 334 ~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 334 KVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred cCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 778999999998 69999999999988654
No 162
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.78 E-value=8.9e-19 Score=148.81 Aligned_cols=116 Identities=32% Similarity=0.599 Sum_probs=86.1
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
||+|+|++|||||||+++| .+..+... .......+ ..+.............+.+||++|++.+...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l-~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 67 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRL-CGGEFPDN-------SVPEETSE-----ITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH 67 (119)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHSS---------------SSTT-----SCEEEEEEEETTEEEEEEEEEESSSHCHHCTS
T ss_pred CEEEECcCCCCHHHHHHHH-hcCCCccc-------ccccccCC-----CcEEEEEEEecCCceEEEEEecCccceecccc
Confidence 7999999999999999998 33333200 00001111 13444456667777779999999999888877
Q ss_pred hhcccCceEEEEEEeCCCCCChhhH---HHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGI---DRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l---~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
..++.++|++|+|||+++++||+.+ ..|+..+....+++|++|||||.|
T Consensus 68 ~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 68 QFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7789999999999999999999987 446777776667899999999998
No 163
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=7.4e-18 Score=148.53 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=103.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|+|||||++++. +..+... .... .++.++....+..++ ..+.+|||+|..++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~-~~~~~~~----------~~~~---~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA-GRDRAIV----------SDIA---GTTRDVIEESIDIGG--IPVRLIDTAGIRETEDE 65 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH-CCceEec----------cCCC---CCccceEEEEEEeCC--EEEEEEECCCcCCCcch
Confidence 589999999999999999973 2221100 0001 112244444455554 56799999998655321
Q ss_pred --------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 141 --------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 141 --------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
...++..+|++++|+|++++.+..+...|.. ..+.|+++|+||+|+.+.... .....+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~ 133 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-------LSLLAGKP 133 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-------ccccCCCc
Confidence 2245679999999999999888777654433 346899999999998654332 23445679
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i 235 (432)
++++||+++.|+++++++|.+.+
T Consensus 134 ~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999999999988754
No 164
>KOG0070|consensus
Probab=99.78 E-value=1.5e-18 Score=156.29 Aligned_cols=158 Identities=17% Similarity=0.274 Sum_probs=125.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
....+|+++|-.++||||++.+| ..++...+ .|++ .+...++.+. .+.+.+||.+||+++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykL----------k~~E~vtt-vPTi-------GfnVE~v~yk--n~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKL----------KLGEIVTT-VPTI-------GFNVETVEYK--NISFTVWDVGGQEKL 74 (181)
T ss_pred cceEEEEEEeccCCCceeeeEee----------ccCCcccC-CCcc-------ccceeEEEEc--ceEEEEEecCCCccc
Confidence 44689999999999999999998 33333333 5666 4666666666 478999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh-----cC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-----NQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-----~~ 210 (432)
+.+|+.|+++.+++|||+|.+|++.+.+.++-+..+.... .+.|+++.+||.|++. ..+..++.+.... ..
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~ 152 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRN 152 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCC
Confidence 9999999999999999999999999999877666665554 4799999999999964 3444444433322 23
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..+..|+|.+|+|+.|.++++...+..
T Consensus 153 w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 153 WHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cEEeeccccccccHHHHHHHHHHHHhc
Confidence 467889999999999999999998854
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=3.1e-18 Score=178.55 Aligned_cols=150 Identities=23% Similarity=0.206 Sum_probs=110.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|.+|||||||+|+|...+... .....| +|.++....+.+++. .+.+|||+|.+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-----------v~~~~g---tT~d~~~~~i~~~g~--~i~l~DT~G~~~~~ 277 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI-----------VTDIAG---TTRDVIEEHINLDGI--PLRLIDTAGIRETD 277 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------cCCCCC---cccccEEEEEEECCe--EEEEEeCCCCCCCc
Confidence 34799999999999999999983222110 011111 334666777777774 57999999987654
Q ss_pred hh--------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 TI--------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ~l--------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
.. ...+++++|++|+|||++++.++++...|.. ..+.|+++|+||+|+....... ...+
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~--------~~~~ 344 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE--------EENG 344 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh--------hccC
Confidence 32 2246789999999999999988886655543 3468999999999996433221 3345
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.+++++||++|.|+++++++|.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999999988743
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=7.6e-18 Score=174.19 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=107.1
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc--
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF-- 137 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~-- 137 (432)
..+|+++|.+|||||||+|+|...+.+... ...+|++.....+.+.+. ..+.+|||+|..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~---------------~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp 260 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAAD---------------QLFATLDPTLRRIDVADV-GETVLADTVGFIRHLP 260 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeecc---------------CCCCCcCCceEEEEeCCC-CeEEEEecCcccccCC
Confidence 368999999999999999998322211100 011234555556666553 25689999998432
Q ss_pred chhhh------hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 138 CTIIR------SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 138 ~~l~~------~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
..++. ..++++|++|+|+|++++.+++++..|...+.... .++|+++|+||+|+..... .... ....+
T Consensus 261 ~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~ 335 (426)
T PRK11058 261 HDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEEN 335 (426)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcC
Confidence 22222 23688999999999999988888765555444433 4689999999999854211 1111 11234
Q ss_pred Cc-EEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MA-FFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~-~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
.+ ++++||++|.|+++++++|.+.+...
T Consensus 336 ~~~~v~ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 336 KPIRVWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 44 58999999999999999999988543
No 167
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=9.7e-18 Score=147.97 Aligned_cols=147 Identities=16% Similarity=0.042 Sum_probs=98.4
Q ss_pred EEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch----
Q psy3450 64 LLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT---- 139 (432)
Q Consensus 64 vvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~---- 139 (432)
+++|.+|||||||+++++...... .. ... ..+.+........++ ..+.+|||||.+.+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~--------~~---~~~---~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI--------VE---DTP---GVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe--------ec---CCC---CceeCceeEEEEECC--eEEEEEECCCCCCchhHHHH
Confidence 489999999999999983221110 00 000 111233444444555 5689999999987544
Q ss_pred ----hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEE
Q psy3450 140 ----IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFF 214 (432)
Q Consensus 140 ----l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~ 214 (432)
....+++++|++++|+|..+..+..+. .+...++.. +.|+++|+||+|+...... .......+. +++
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 136 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPI 136 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeE
Confidence 233567889999999999876555432 222333332 4899999999999653322 223334565 889
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~ 234 (432)
++||++|.|++++|+++++.
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 PISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EEecccCCCHHHHHHHHHhh
Confidence 99999999999999999875
No 168
>KOG0075|consensus
Probab=99.76 E-value=1.4e-18 Score=150.22 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=118.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+.+.++|-.++|||||+|.. ..+++.....|+.| |... .++...+.+.+||.+||.+|+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~i----------a~g~~~edmiptvG-------fnmr--k~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVI----------ARGQYLEDMIPTVG-------FNMR--KVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred eeeEEEEeeccCCcceEEEEE----------eeccchhhhccccc-------ceeE--EeccCceEEEEEecCCCccHHH
Confidence 478999999999999999987 44455555666665 3333 3455678899999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH-----HHhcCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY-----AIKNQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~-----a~~~~~~ 212 (432)
+|..|+++++++++|+|+.+++.+...+.-+..+.... .++|++++|||.|+.+ ....++...- .....+.
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvc 158 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVC 158 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEE
Confidence 99999999999999999999988877755444443332 5799999999999853 2333322111 1122356
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i 235 (432)
+|.+|++...||+-+.+||+++-
T Consensus 159 C~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 159 CFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEcCCccHHHHHHHHHHHh
Confidence 89999999999999999999875
No 169
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=7.5e-18 Score=153.46 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=107.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCC-------cCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSS-------ESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~-------~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+|+++|.+|+|||||+|.|... ........... ......+ .+++.....+... ...+.||||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYV-TGDIERDGTVEETFLDVLKEERERG-----ITIKSGVATFEWP--DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHh-cCCCCcCCceecccccCCHHHHHcC-----CCeecceEEEeeC--CEEEEEEeCCCc
Confidence 4899999999999999998332 22211000000 0000000 1122222233333 467899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cCHHHHHHHHHh----
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VTTREAEMYAIK---- 208 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~~ee~~~~a~~---- 208 (432)
..+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+..+.. ...+++.+..+.
T Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 73 EDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 9888888889999999999999988765443 344444444 4689999999999964221 112333333333
Q ss_pred ----------cCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 209 ----------NQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 209 ----------~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
...+++++||++|.|++++|+++.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246899999999999999999998876
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.75 E-value=2.1e-17 Score=177.41 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=116.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCC-CCcccccCCCCc----CccccCCCccccccceeEEEEEE---CCeEEEEEEEeC
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLES-RFPRFWLDGSSE----SPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWDT 131 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~-~~~~~~~~~~~~----~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~Dt 131 (432)
.-+|+++|+.++|||||+++|.... .+.......... .....++ ++......+.+ ++..++++||||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGi-----Ti~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGI-----TIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCC-----CeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 3479999999999999999984321 111000000000 0011122 12222222333 567799999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
||+++|...+..+++.+|++|+|||+++..+++....|...+. .++|+++|+||+|+.... ..+...++.+.+++
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~ 152 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGL 152 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCC
Confidence 9999999889999999999999999999888887777765543 358999999999985422 12233455555565
Q ss_pred ---cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 212 ---AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 212 ---~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++++||++|.||+++|++|++.+
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 489999999999999999999876
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.75 E-value=1.1e-17 Score=154.70 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=100.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE------------CCeEEEEEE
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL------------DGKRVKLQL 128 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i------------~~~~v~l~i 128 (432)
++|+++|++|+|||||+++|........ .+... .....+ .|++.....+.+ +++.+.+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~--~~~~~-~e~~~g-----~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAA--FDKNP-QSQERG-----ITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhh--hccCH-HHHHcC-----CeeeecceEEEecccccccccccccccCceEEE
Confidence 5899999999999999999832110000 00000 000011 112222222222 234678999
Q ss_pred EeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc--ccCHHHHHHHH
Q psy3450 129 WDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR--TVTTREAEMYA 206 (432)
Q Consensus 129 ~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r--~v~~ee~~~~a 206 (432)
|||||+..+..........+|++++|+|+++.........|.. ... .+.|+++|+||+|+.... +...++..+..
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 9999986543322233467899999999988655444333321 122 257999999999986322 12223333221
Q ss_pred H-------hcCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 207 I-------KNQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 207 ~-------~~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
. ..+++++++||++|.|+++++++|..++.
T Consensus 150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1 13578999999999999999999998873
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.2e-17 Score=173.51 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=106.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc--
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR-- 136 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~-- 136 (432)
...+|+|+|++|||||||+|+| .+..+.. .....| .|.+.....+.+++. .+.+|||+|++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl-~~~~~~~----------v~~~~g---vT~d~~~~~~~~~~~--~~~l~DT~G~~~~~ 100 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRI-LGRREAV----------VEDVPG---VTRDRVSYDAEWNGR--RFTVVDTGGWEPDA 100 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHH-hCcCccc----------ccCCCC---CCEeeEEEEEEECCc--EEEEEeCCCcCCcc
Confidence 3469999999999999999998 3322211 111112 123444455566664 478999999863
Q ss_pred ------cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 137 ------FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 137 ------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+......+++.+|++|+|||+++..++.. ..|...++. .++|+++|+||+|+... ..+..+.+....+
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~ 174 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERG---EADAAALWSLGLG 174 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCcc---chhhHHHHhcCCC
Confidence 23334567899999999999999877653 345555543 45899999999998532 1122222222223
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..+++||++|.|++++|+++++.+.+
T Consensus 175 -~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 -EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred -CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 45799999999999999999988754
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=8.8e-17 Score=143.64 Aligned_cols=156 Identities=22% Similarity=0.214 Sum_probs=101.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.++|+++|++|+|||||++++.......... .. .++.+.....+..++.. +.+|||+|..+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-----------IA---GTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-----------CC---CCccCceeeEEEECCee--EEEEECCCCccccc
Confidence 4789999999999999999983322111100 00 11123333445555544 68999999754311
Q ss_pred ----------h-hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH-HHH
Q psy3450 140 ----------I-IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM-YAI 207 (432)
Q Consensus 140 ----------l-~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~-~a~ 207 (432)
. ....++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.+....++..+ +.+
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRR 142 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHh
Confidence 1 11346789999999999998876654 33333333 358999999999996543222333222 223
Q ss_pred hc----CCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 208 KN----QMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 208 ~~----~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.. +.+++++||+++.|++++++.+.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 33 3689999999999999999998764
No 174
>KOG4423|consensus
Probab=99.74 E-value=1.8e-19 Score=161.42 Aligned_cols=168 Identities=27% Similarity=0.491 Sum_probs=140.8
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe-EEEEEEEeCCCCc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK-RVKLQLWDTSGQG 135 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~-~v~l~i~Dt~G~e 135 (432)
.++++|+.|+|+-+||||+++.++ ....+...+..++| +++..+....+++ .+++++||.+||+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ry----------v~~nfs~~yRAtIg-----vdfalkVl~wdd~t~vRlqLwdIagQe 86 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRY----------VHQNFSYHYRATIG-----VDFALKVLQWDDKTIVRLQLWDIAGQE 86 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHH----------HHHHHHHHHHHHHh-----HHHHHHHhccChHHHHHHHHhcchhhh
Confidence 578999999999999999999997 44455556667777 6777777777665 5789999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCCCcccC-HHHHHHHHHhc
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVT-TREAEMYAIKN 209 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~~r~v~-~ee~~~~a~~~ 209 (432)
+|..|..-||+.+.+..+|||+++..+|+...+|.+++.... ..+|+++..||+|....-... .....++.+++
T Consensus 87 rfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ken 166 (229)
T KOG4423|consen 87 RFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKEN 166 (229)
T ss_pred hhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhcc
Confidence 999999999999999999999999999999999999886543 247899999999985432221 34566788888
Q ss_pred CC-cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 210 QM-AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 210 ~~-~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
|+ .++|+|+|.+.|++|+-..|++.++-+.
T Consensus 167 gf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 167 GFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred CccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 87 8999999999999999999999987654
No 175
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2.2e-16 Score=162.70 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=111.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCc-cccccceeEEEEEECCeEEEEEEEeCCCCcc----
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK-YDDMLAYKTTTILLDGKRVKLQLWDTSGQGR---- 136 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~-~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~---- 136 (432)
.|+++|.|||||||||+++.. .+. .++. ..+|.....-.+.+++ ...+.+||+||..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~-ak~---------------kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~ 222 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN-AKP---------------KIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASE 222 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc-CCC---------------ccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccc
Confidence 799999999999999999822 111 0110 0122233333344431 34689999999743
Q ss_pred cchhhhhc---ccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 137 FCTIIRSY---SRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 137 ~~~l~~~~---~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
...+...| +++++++|+|+|+++. ++++++..|..++..+. .+.|++||+||+|+.. ..+..+.+.+
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~ 298 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKE 298 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHH
Confidence 22344444 4569999999999865 67888888888888765 3689999999999843 2344566777
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
..+.+++++||+++.|+++++++|.+.+.+.
T Consensus 299 ~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 299 KLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred HhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 7778899999999999999999999887553
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=1.1e-16 Score=147.65 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=101.2
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC--
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~-- 134 (432)
.+..++|+++|++|||||||++++ .+..+ ...+.+..|.+ ... ..... ..++.||||||.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l-~~~~~---------~~~~~~~~~~t---~~~--~~~~~---~~~l~l~DtpG~~~ 82 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINAL-TNRKN---------LARTSKTPGRT---QLI--NFFEV---NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHH-hCCCC---------cccccCCCCce---eEE--EEEec---CCeEEEeCCCCCCC
Confidence 346789999999999999999998 22221 11122233211 111 11111 257899999994
Q ss_pred --------cccchhhhhcccC---ceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cCHHH
Q psy3450 135 --------GRFCTIIRSYSRG---AQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VTTRE 201 (432)
Q Consensus 135 --------e~~~~l~~~~~~~---ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~~ee 201 (432)
+++..+...+++. .+++++|+|.+++.+..+. .+...+.. .++|+++|+||+|+....+ ...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~ 159 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKK 159 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHH
Confidence 3344444555554 4688899998876544331 12222222 3589999999999864322 22233
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 202 AEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 202 ~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+.........+++++||+++.|++++++.|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 160 VRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44444444679999999999999999999987763
No 177
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=6.1e-17 Score=145.03 Aligned_cols=148 Identities=22% Similarity=0.261 Sum_probs=100.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc--
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC-- 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~-- 138 (432)
++|+++|.||||||||+|+|....... ....| +|++.....+.+++ ..+.++|+||.....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v------------~n~pG---~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV------------GNWPG---TTVEKKEGIFKLGD--QQVELVDLPGIYSLSSK 63 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE------------EESTT---SSSEEEEEEEEETT--EEEEEEE----SSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee------------cCCCC---CCeeeeeEEEEecC--ceEEEEECCCcccCCCC
Confidence 689999999999999999983322111 11112 34677777777777 457999999964332
Q ss_pred ----hhhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 139 ----TIIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 139 ----~l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
.+...++ .+.|++|+|.|+++. +.-..+..++.+. ++|+++|.||+|+..++.+.. +...+.+.++++
T Consensus 64 s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~p 137 (156)
T PF02421_consen 64 SEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVP 137 (156)
T ss_dssp SHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-
T ss_pred CcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCC
Confidence 2233444 689999999999874 3223344455544 489999999999865444332 356778889999
Q ss_pred EEEEcCCCCCCHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTEL 231 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L 231 (432)
++.+||+++.|++++++.|
T Consensus 138 vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHhhC
Confidence 9999999999999999875
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=2.3e-16 Score=139.46 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=100.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
..+|+++|.+|+|||||++++ .+..+..... ... ++.... ..+ .......+.+|||+|......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l-~~~~~~~~~~----------~~~---~~~~~~-~~~-~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNAL-VGQKISIVSP----------KPQ---TTRNRI-RGI-YTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHH-hCCceEeccC----------CCC---ceeceE-EEE-EEcCCeEEEEEECCCCCcchH
Confidence 468999999999999999997 3332211100 000 000111 111 223346789999999764332
Q ss_pred --------hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-
Q psy3450 140 --------IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ- 210 (432)
Q Consensus 140 --------l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~- 210 (432)
.....+..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+........+....+....+
T Consensus 67 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd04163 67 KLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPF 143 (168)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCC
Confidence 223457889999999999987221 123334444433 47999999999996433333333444555453
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.+++++|++++.|++++++.|.+.
T Consensus 144 ~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEEEEeccCCChHHHHHHHHhh
Confidence 689999999999999999999764
No 179
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=2.6e-16 Score=164.35 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=110.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCc-cccccceeEEEEEECCeEEEEEEEeCCCCcc--
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK-YDDMLAYKTTTILLDGKRVKLQLWDTSGQGR-- 136 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~-~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~-- 136 (432)
..+|+|||.||||||||+|+|.. .+. .++. ..+|++.....+.+++ .++.||||||..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~-akp---------------kIadypfTTl~P~lGvv~~~~--~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSA-AKP---------------KIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhc-CCc---------------cccccCcccccceEEEEEECC--eEEEEEECCCCcccc
Confidence 35799999999999999999821 111 1111 1233455555555655 5689999999632
Q ss_pred --cchhhh---hcccCceEEEEEEeCCCC----CChhhHHHHHHHHHhhC------------CCCcEEEEEECccCCCCc
Q psy3450 137 --FCTIIR---SYSRGAQGILLVYDITNK----WSFDGIDRWLKEVEEHA------------PGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 137 --~~~l~~---~~~~~ad~iIlV~Dvt~~----~Sf~~l~~~l~~i~~~~------------~~iPiILVgNK~DL~~~r 195 (432)
...+.. .+++++|++|+|+|+++. +.++++..|..++..+. .+.|+|||+||+|+.+.+
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 122222 245789999999999863 45666666666665442 358999999999996543
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.+ .+.........+++++++||+++.|+++++++|.+.+...+
T Consensus 301 el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 301 EL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 32 22223334455789999999999999999999999886543
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=2.6e-16 Score=143.98 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=92.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc--
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-- 135 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-- 135 (432)
+..++|+++|++|+|||||+|++. +..+ .....++.|. |.+. ..+..++ .+.+|||||..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~-~~~~---------~~~~~~~~~~---t~~~--~~~~~~~---~~~liDtpG~~~~ 77 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT-NRKK---------LARTSKTPGR---TQLI--NFFEVND---GFRLVDLPGYGYA 77 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh-CCCC---------cccccCCCCc---ceEE--EEEEeCC---cEEEEeCCCCccc
Confidence 566899999999999999999982 2221 1111222321 1111 1122232 58999999953
Q ss_pred --------ccchhhhhccc---CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc--ccCHHHH
Q psy3450 136 --------RFCTIIRSYSR---GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR--TVTTREA 202 (432)
Q Consensus 136 --------~~~~l~~~~~~---~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r--~v~~ee~ 202 (432)
.+..+...|++ .++++++|+|.+++.+..+. .++..+.. .++|+++|+||+|+.... +...+++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i 154 (179)
T TIGR03598 78 KVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKI 154 (179)
T ss_pred cCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 23334445554 35899999999887655554 23344433 258999999999986432 2223445
Q ss_pred HHHHHhcC--CcEEEEcCCCCCCHH
Q psy3450 203 EMYAIKNQ--MAFFEVSPLCDFNIR 225 (432)
Q Consensus 203 ~~~a~~~~--~~~~evSAktg~nI~ 225 (432)
++..+..+ ..++++||++|+|++
T Consensus 155 ~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 155 KKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHhhccCCCceEEEECCCCCCCC
Confidence 55555543 489999999999974
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=4e-16 Score=162.27 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=101.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc----
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR---- 136 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~---- 136 (432)
.+|+++|.+|||||||+|+| .+.+.... ....| .+.+.....+.+++ ..+.+|||+|++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l-~~~~~~~v----------~~~~~---~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRL-TGKRDAIV----------ADTPG---VTRDRIYGEAEWLG--REFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHH-hCCCceee----------CCCCC---CcccceEEEEEECC--cEEEEEECCCCCCcchh
Confidence 58999999999999999997 33222100 01111 22355555666776 6789999999986
Q ss_pred ----cchhhhhcccCceEEEEEEeCCCCCChhh--HHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 137 ----FCTIIRSYSRGAQGILLVYDITNKWSFDG--IDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 137 ----~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~--l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+......+++.+|++|+|+|+++..+..+ +..|+.. . +.|+++|+||+|+.+ . .+...++ ...+
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~-~---~~~~~~~-~~lg 135 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPD-E---EADAYEF-YSLG 135 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCcc-c---hhhHHHH-HhcC
Confidence 22233456789999999999988654432 2344432 2 589999999999743 1 1222222 3456
Q ss_pred C-cEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 211 M-AFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 211 ~-~~~evSAktg~nI~elf~~L~~~ 234 (432)
+ .++++||++|.|++++|+.+...
T Consensus 136 ~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 136 LGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 5 48999999999999999999874
No 182
>KOG1423|consensus
Probab=99.69 E-value=9.9e-17 Score=154.27 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=136.6
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
.+....+.|+|||.||||||||.|.+ ++.+.........+++....++ +.....++.|+||||.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~m-ig~kv~~vS~K~~TTr~~ilgi---------------~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQM-IGQKVSAVSRKVHTTRHRILGI---------------ITSGETQLVFYDTPGL 130 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHh-hCCccccccccccceeeeeeEE---------------EecCceEEEEecCCcc
Confidence 44567899999999999999999997 5544433333322222211111 2334578999999995
Q ss_pred cc------cchh------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH---
Q psy3450 135 GR------FCTI------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT--- 199 (432)
Q Consensus 135 e~------~~~l------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~--- 199 (432)
-. +..+ -...+..||++++|+|+++....-. ...+..+..+ .++|-++|.||.|...++.+..
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~ 208 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLK 208 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhH
Confidence 21 1111 1134578999999999997432222 2233333333 4589999999999854321111
Q ss_pred -------------HHHHHHHHhc---------CC----cEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCC
Q psy3450 200 -------------REAEMYAIKN---------QM----AFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRK 253 (432)
Q Consensus 200 -------------ee~~~~a~~~---------~~----~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~ 253 (432)
+-.+++...- |. .+|.+||++|+||+++-++|..++ +.+.
T Consensus 209 ~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa--------------~~gp 274 (379)
T KOG1423|consen 209 DLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA--------------PPGP 274 (379)
T ss_pred HhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC--------------CCCC
Confidence 1111111111 11 489999999999999999999887 5566
Q ss_pred CCcCCCCchhHHHHHHHhcccccccccCCCceeEEEEEEeeccccCCccccccccccccchhh
Q psy3450 254 PLINFESFTELSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSV 316 (432)
Q Consensus 254 ~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (432)
+.++.+..++.+.+++ ..|++|+++.--+-+|.||..-+
T Consensus 275 W~y~a~i~T~~s~e~l------------------------~~e~VReklLd~~pqEVPY~lq~ 313 (379)
T KOG1423|consen 275 WKYPADIVTEESPEFL------------------------CSESVREKLLDHLPQEVPYNLQV 313 (379)
T ss_pred CCCCcccccccCHHHH------------------------HHHHHHHHHHhhCccccCcceEE
Confidence 6677777777777777 56899999999999999998766
No 183
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=6.2e-16 Score=165.54 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=104.9
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
...+|+++|+.++|||||+++| .+..+.... .+++ |.+.....+.+++.. .+.||||||++.|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l-~~~~v~~~e---------~~GI-----T~~ig~~~v~~~~~~-~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSI-RKTKVAQGE---------AGGI-----TQHIGAYHVENEDGK-MITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-HhCCccccc---------CCce-----eecceEEEEEECCCc-EEEEEECCCCcchh
Confidence 3468999999999999999997 333332211 1111 123333445554432 67999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC--------
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-------- 210 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~-------- 210 (432)
.++...+..+|++|+|||+++...-+.... +..... .++|+++++||+|+... ..++....+...+
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~~--~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~ 223 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAKA--ANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGG 223 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHHH--cCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCC
Confidence 999889999999999999987533222222 222222 46899999999998532 2333333333222
Q ss_pred -CcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 211 -MAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 211 -~~~~evSAktg~nI~elf~~L~~ 233 (432)
.+++++||++|.|++++|+++..
T Consensus 224 ~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CceEEEEECCCCCChHHHHHhhhh
Confidence 47999999999999999999874
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=3.2e-16 Score=168.32 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=105.2
Q ss_pred CcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh------
Q psy3450 67 GDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI------ 140 (432)
Q Consensus 67 G~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l------ 140 (432)
|++|||||||+|++ .+..+ .....+ ..|++.....+.+++. ++++|||||++++...
T Consensus 1 G~pNvGKSSL~N~L-tg~~~---------~v~n~p-----G~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v 63 (591)
T TIGR00437 1 GNPNVGKSTLFNAL-TGANQ---------TVGNWP-----GVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEV 63 (591)
T ss_pred CCCCCCHHHHHHHH-hCCCC---------eecCCC-----CeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHH
Confidence 89999999999998 22221 111111 1335666666777664 4699999999877543
Q ss_pred hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 141 IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 141 ~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
...++ +++|++++|+|.++.+. ...+..++.+ .++|+++|+||+|+.+++.+. .+.+.+.+..+++++++||
T Consensus 64 ~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA 137 (591)
T TIGR00437 64 ARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSA 137 (591)
T ss_pred HHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEEC
Confidence 33443 47899999999987432 2333344433 368999999999996555544 4567788889999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
++|.|++++++.+.+..
T Consensus 138 ~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.68 E-value=5.7e-16 Score=145.01 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=76.7
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTRE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee 201 (432)
.++.||||||+++|.......+..+|++++|+|++++.........+..+... ...|++||+||+|+..+... ..++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHH
Confidence 57899999999988776666778899999999998742111111122222222 22479999999999643211 1233
Q ss_pred HHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 202 AEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 202 ~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++++.+.. +++++++||++|.|++++|++|.+.+
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 44444432 56899999999999999999998766
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=6.8e-16 Score=134.57 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=99.5
Q ss_pred EeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh----
Q psy3450 65 LVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI---- 140 (432)
Q Consensus 65 vvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l---- 140 (432)
++|.+|+|||||+++++........ ... ..+..........+. ...+.+|||+|...+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-----------PVP---GTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-----------CCC---CcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhH
Confidence 5899999999999998332211100 000 011122223333332 457899999998765433
Q ss_pred ---hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHH---HHHHHHHhcCCcEE
Q psy3450 141 ---IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTR---EAEMYAIKNQMAFF 214 (432)
Q Consensus 141 ---~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~e---e~~~~a~~~~~~~~ 214 (432)
...+++.+|++++|+|.++..+..... |...... .+.|+++|+||+|+......... .........+.+++
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence 334778999999999999987776654 3443333 46899999999998654322211 11122233457999
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~ 234 (432)
++||+++.|++++++++.+.
T Consensus 143 ~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 143 AVSALTGEGIDELREALIEA 162 (163)
T ss_pred EEeeeccCCHHHHHHHHHhh
Confidence 99999999999999999865
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=8.5e-16 Score=165.26 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=114.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCC----cCccccCCCccccccceeEEEEEE---CCeEEEEEEEe
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSS----ESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWD 130 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~----~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~D 130 (432)
..-+|+++|..++|||||+.+|... +.+......... ......++ ++......+.+ +++.+.++|||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGi-----Ti~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGI-----TIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCC-----cccccEEEEEEEccCCCcEEEEEEE
Confidence 3458999999999999999998331 222110000000 00011111 12222222322 56678999999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
|||+++|...+..+++.+|++|+|+|+++....+....|..... .++|+++|+||+|+...+ ..+...++.+.++
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg 155 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG 155 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence 99999999888999999999999999999877776666655432 358999999999985422 1222234444455
Q ss_pred C---cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 211 M---AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 211 ~---~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+ .++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 5 3899999999999999999998763
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=1e-15 Score=158.76 Aligned_cols=152 Identities=19% Similarity=0.171 Sum_probs=103.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc------
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG------ 135 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e------ 135 (432)
||+++|++|||||||+|+| .+.+... .....| .|.+.....+.+++. .+.+|||||..
T Consensus 1 ~i~ivG~~nvGKStL~n~l-~~~~~~~----------v~~~~g---~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRL-TGKRDAI----------VSDTPG---VTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHH-hCCCcce----------ecCCCC---cccCceEEEEEECCe--EEEEEECCCCCCcchhH
Confidence 5899999999999999998 3222111 111112 123445555666664 47999999963
Q ss_pred --ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-c
Q psy3450 136 --RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-A 212 (432)
Q Consensus 136 --~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~ 212 (432)
.+......+++.+|++++|+|..+..+..+ ..+...+++ .+.|+++|+||+|+...... ..+ ...+++ +
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~--~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~ 136 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK--SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGE 136 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH--hCCCEEEEEECccCCccccc----HHH-HHhcCCCC
Confidence 333445567899999999999988654443 223333333 25899999999998653321 112 335666 7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++||++|.|++++++++.+.+..
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhcCc
Confidence 9999999999999999999987744
No 189
>KOG0076|consensus
Probab=99.66 E-value=1.1e-16 Score=142.31 Aligned_cols=165 Identities=23% Similarity=0.350 Sum_probs=120.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+.|+|+|..++|||||+.+. ...|...+ .+-.... ..+|+-....++.++ ...+.|||.+||+..++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~--Kt~~~~~~-~~l~~~k-------i~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEAL--KTDFSKAY-GGLNPSK-------ITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRS 84 (197)
T ss_pred hhhheeeccccCCchhHHHHH--HHHHHhhh-cCCCHHH-------eecccceeecceeec--cceeEEEEcCChHHHHH
Confidence 367999999999999999975 22222211 1111111 122234445556666 35689999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH---HHhc---CC
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY---AIKN---QM 211 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~---a~~~---~~ 211 (432)
+|..||..++++|+++|++|++-|++...-++.+...- .++|+++.+||.|+.+. ...+++... ++.. ..
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccC
Confidence 99999999999999999999999998866666554332 68999999999998542 333333322 3332 36
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++..|||.+|+||+|-.+|+++.+.++
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 899999999999999999999988654
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.5e-15 Score=165.29 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
...+|+|+|..++|||||+++| ....+... ...++. ..+..+...+..++....+.||||||++.|.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L-~~~~~~~~---------e~~GiT---q~i~~~~v~~~~~~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKI-RKTQIAQK---------EAGGIT---QKIGAYEVEFEYKDENQKIVFLDTPGHEAFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHH-HhccCccc---------cCCccc---cccceEEEEEEecCCceEEEEEECCcHHHHH
Confidence 4468999999999999999997 33333211 111110 0112223333444556889999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHH-------HHhcC-
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMY-------AIKNQ- 210 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~-------a~~~~- 210 (432)
.++..+++.+|++|||+|+++....+....| ..+.. .++|+|||+||+|+.... .++.... ...++
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k~--~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~ 383 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQA--ANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHHh--cCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCC
Confidence 9999999999999999999875333322222 22222 468999999999986421 2222221 22233
Q ss_pred -CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 -MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 -~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++++++||++|.|++++|+.|....
T Consensus 384 ~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CceEEEEECCCCCCHHHHHHhhhhhh
Confidence 6899999999999999999988754
No 191
>KOG0071|consensus
Probab=99.66 E-value=1.4e-15 Score=130.75 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=119.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.++|+++|-.++||||++..|..+.. ....|+. -|..+++.+.+ +++++||.+|+++.+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-----------~~~ipTv-------GFnvetVtykN--~kfNvwdvGGqd~iRp 76 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-----------VTTIPTV-------GFNVETVTYKN--VKFNVWDVGGQDKIRP 76 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-----------ccccccc-------ceeEEEEEeee--eEEeeeeccCchhhhH
Confidence 68999999999999999999822221 1233444 46666666654 7789999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh-----cCCc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-----NQMA 212 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-----~~~~ 212 (432)
+|+.||.+..++|||.|..+.+..++.+.-+..+.... .+.|++|.+||.|+++. ...+|+.++.+- ...-
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~ 154 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWY 154 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccE
Confidence 99999999999999999999888887755444443332 57899999999999754 455666655432 2345
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i 235 (432)
...++|.+|.++.|-|.+|...+
T Consensus 155 vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 155 VQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred eeccccccchhHHHHHHHHHhhc
Confidence 77899999999999999998765
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.65 E-value=3.3e-15 Score=143.00 Aligned_cols=150 Identities=24% Similarity=0.205 Sum_probs=98.6
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc---
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC--- 138 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~--- 138 (432)
+|+++|.+|+|||||+++|......... ...+|.+.....+.+++ .++++|||||+.+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~---------------~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA---------------YEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC---------------CCCccccceEEEEEECC--eEEEEEECCCcccccccc
Confidence 7899999999999999998222111000 01122234444555665 568999999975432
Q ss_pred -h---hhhhcccCceEEEEEEeCCCCCC-hhhHHHHHH------------------------------------------
Q psy3450 139 -T---IIRSYSRGAQGILLVYDITNKWS-FDGIDRWLK------------------------------------------ 171 (432)
Q Consensus 139 -~---l~~~~~~~ad~iIlV~Dvt~~~S-f~~l~~~l~------------------------------------------ 171 (432)
. ....+++++|++++|+|+++++. .+.+...++
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~ 144 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAI 144 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHH
Confidence 1 22346899999999999987652 222222221
Q ss_pred --HH----------------------HhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 172 --EV----------------------EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 172 --~i----------------------~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
++ ......+|+++|+||+|+. ..+++..+++. ..++++||++|.|++++
T Consensus 145 l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l 217 (233)
T cd01896 145 LREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDEL 217 (233)
T ss_pred HHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHH
Confidence 11 0011236999999999984 34555555543 36899999999999999
Q ss_pred HHHHHHHH
Q psy3450 228 FTELSRRA 235 (432)
Q Consensus 228 f~~L~~~i 235 (432)
|+.+.+.+
T Consensus 218 ~~~i~~~L 225 (233)
T cd01896 218 KERIWDKL 225 (233)
T ss_pred HHHHHHHh
Confidence 99999866
No 193
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.65 E-value=1.6e-15 Score=162.85 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=110.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+.|+++|..++|||||+++|. +... ..+...+..++ |++.....+..++ ..+.|||+||+++|...
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLt-g~~~------d~~~eE~~rGi-----Tid~~~~~~~~~~--~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALT-GIAA------DRLPEEKKRGM-----TIDLGFAYFPLPD--YRLGFIDVPGHEKFISN 66 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHh-CccC------cCChhHhcCCc-----eEEeEEEEEEeCC--EEEEEEECCCHHHHHHH
Confidence 358999999999999999982 2110 01111111222 2455555566666 67899999999999877
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc--CHHHHHHHHHhc----CCcE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV--TTREAEMYAIKN----QMAF 213 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v--~~ee~~~~a~~~----~~~~ 213 (432)
...++.++|++|+|+|+++....+ ..+.+..+.. .++| +++|+||+|+.++..+ ..+++.++++.. ++++
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~q-T~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQ-TGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcE
Confidence 778889999999999998842211 1222322332 2477 9999999999754322 234455555554 4789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++||++|.|++++++.+...+..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999998876643
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=4.1e-15 Score=163.63 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=108.9
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.++|+++|.+|||||||+|++. +.+. . .....| +|++.....+.. ...++.+|||||...+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt-g~~~---------~--vgn~pG---vTve~k~g~~~~--~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT-GARQ---------R--VGNWAG---VTVERKEGQFST--TDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh-CCCC---------c--cCCCCC---ceEeeEEEEEEc--CceEEEEEECCCcccccc
Confidence 3689999999999999999982 2111 0 111122 233444444433 446689999999877643
Q ss_pred h----------hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 140 I----------IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 140 l----------~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
. ...++ .++|++++|+|.++.+. ...|..++.+. ++|+++|.||+|+.+++.+ ..+.+++.+
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i-~id~~~L~~ 139 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL--GIPCIVALNMLDIAEKQNI-RIDIDALSA 139 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc--CCCEEEEEEchhhhhccCc-HHHHHHHHH
Confidence 2 22333 48999999999988643 23355555543 5899999999998755554 355677888
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++++++++||++|.|++++++.+.+..
T Consensus 140 ~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 8999999999999999999999988754
No 195
>KOG0074|consensus
Probab=99.64 E-value=1e-15 Score=131.70 Aligned_cols=156 Identities=21% Similarity=0.319 Sum_probs=119.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||.++|-.++|||||+.+| .+...+...++. -|..+.+..++ .+++++||.+|+...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL-----------~sED~~hltpT~-------GFn~k~v~~~g-~f~LnvwDiGGqr~I 75 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQL-----------KSEDPRHLTPTN-------GFNTKKVEYDG-TFHLNVWDIGGQRGI 75 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHH-----------ccCChhhccccC-------CcceEEEeecC-cEEEEEEecCCcccc
Confidence 45699999999999999999996 333344455666 47778887777 688999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHh-hC-CCCcEEEEEECccCCCCcccCHHHHHHHH-----HhcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE-HA-PGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~-~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~~ 210 (432)
+..|..||.+.|++|+|.|.+|..-|+++..-+-++.+ .. ..+|++|..||.|+.... ..++...-+ +...
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~eeia~klnl~~lrdRs 153 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVEEIALKLNLAGLRDRS 153 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chHHHHHhcchhhhhhce
Confidence 99999999999999999999999999988554444443 32 579999999999985322 222221111 1122
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~ 234 (432)
..+-+|||.++.++.+-.+++...
T Consensus 154 whIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 154 WHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred EEeeeCccccccCccCcchhhhcC
Confidence 468899999999999988888654
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=3.9e-15 Score=163.72 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=103.1
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.....+|+++|++|||||||+|+| .+.+... .....|. |.+.......+++ ..+.+|||+|.+.
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l-~~~~~~i----------v~~~pGv---T~d~~~~~~~~~~--~~~~liDT~G~~~ 335 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRI-LGRREAV----------VEDTPGV---TRDRVSYDAEWAG--TDFKLVDTGGWEA 335 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHH-hCCCcee----------ecCCCCe---eEEEEEEEEEECC--EEEEEEeCCCcCC
Confidence 345578999999999999999998 3222211 1112221 1233333444555 4578999999763
Q ss_pred --------cchhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 137 --------FCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 137 --------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
+......+++.+|++|+|+|+++.. ... ..|...++. .+.|+++|+||+|+.... .+....+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---~~~~~~~~l 408 (712)
T PRK09518 336 DVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASE---YDAAEFWKL 408 (712)
T ss_pred CCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccch---hhHHHHHHc
Confidence 2223345678999999999998643 233 345555554 468999999999985321 111222222
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..+ ..+++||++|.||+++|++|++.+..
T Consensus 409 g~~-~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 409 GLG-EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence 222 46799999999999999999998754
No 197
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=1.3e-15 Score=142.69 Aligned_cols=116 Identities=21% Similarity=0.319 Sum_probs=83.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
+|+++|++|||||+|+++| ....+.. .+.... ...........+....+.+||+||+++++..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l-~~~~~~~---------t~~s~~------~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKL-TTGKYRS---------TVTSIE------PNVATFILNSEGKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHH-hcCCCCC---------ccCcEe------ecceEEEeecCCCCceEEEEECCCCHHHHHHH
Confidence 5899999999999999998 3333221 111111 01111111112345678999999999998888
Q ss_pred hhcccCc-eEEEEEEeCCCC-CChhhHHHHHHHHHh----hCCCCcEEEEEECccCCC
Q psy3450 142 RSYSRGA-QGILLVYDITNK-WSFDGIDRWLKEVEE----HAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 142 ~~~~~~a-d~iIlV~Dvt~~-~Sf~~l~~~l~~i~~----~~~~iPiILVgNK~DL~~ 193 (432)
..+++.+ +++|+|+|.++. .++.++..|+..+.. ..+++|++||+||+|+..
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 8899998 999999999997 678887777665532 225799999999999854
No 198
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=2.9e-15 Score=155.51 Aligned_cols=169 Identities=12% Similarity=0.061 Sum_probs=102.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccc----------cCCCCc------CccccCCCccccccceeEEEEEECC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFW----------LDGSSE------SPFCSGSGKYDDMLAYKTTTILLDG 121 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~----------~~~~~~------~~~~~~ig~~~~tid~~~~~i~i~~ 121 (432)
...++|+++|.+++|||||+++|+......... ..+... ....+..-....|++.....+..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-- 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-- 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--
Confidence 356899999999999999999984322111000 000000 00000000112334554444444
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcc----
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRT---- 196 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~---- 196 (432)
+.+++.||||||+++|.......++.+|++|+|+|+++..++... ..++..+... ...|+++|+||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHHHH
Confidence 456789999999988865444557899999999999874233222 2233333322 2246999999999964211
Q ss_pred cCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHHHHH
Q psy3450 197 VTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 197 v~~ee~~~~a~~~~-----~~~~evSAktg~nI~elf~ 229 (432)
...+++.++++..+ ++++++||++|.|+++.++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12245555665554 4799999999999998653
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.62 E-value=4e-15 Score=154.50 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=104.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccc---------cCCCC--c----CccccCCCccccccceeEEEEEECC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW---------LDGSS--E----SPFCSGSGKYDDMLAYKTTTILLDG 121 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~---------~~~~~--~----~~~~~~ig~~~~tid~~~~~i~i~~ 121 (432)
...++|+++|..++|||||+++|+.. +.+.... ..+.. . ....+.......|++.....+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-- 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-- 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--
Confidence 45689999999999999999998432 1111100 00000 0 00000000111234554444443
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhH--HHHHHHHHhhCCCCcEEEEEECccCCCCcc---
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI--DRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--- 196 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l--~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--- 196 (432)
..+.+.||||||+++|.......++.+|++|+|+|+++.+++... ..++. +.......|++||+||+|+.+..+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCccHHHH
Confidence 457789999999998866555667899999999999988644221 12222 222223357999999999963211
Q ss_pred -cCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHHHHH
Q psy3450 197 -VTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 197 -v~~ee~~~~a~~~~-----~~~~evSAktg~nI~elf~ 229 (432)
...+++.++++..+ ++++++||++|.|+++.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345666776665 5799999999999987553
No 200
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.62 E-value=8.4e-15 Score=160.68 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=104.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
....|+|+|..++|||||+++| ....+.... ..++ |.+.....+.+++ ..+.||||||++.|.
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~L-r~~~v~~~e---------~~GI-----T~~iga~~v~~~~--~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAI-RKTNVAAGE---------AGGI-----TQHIGAYQVETNG--GKITFLDTPGHEAFT 351 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-HhCCccccc---------cCce-----eeeccEEEEEECC--EEEEEEECCCCccch
Confidence 4468999999999999999997 333332110 0111 1122233445555 568999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH-------HHHHhcC-
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE-------MYAIKNQ- 210 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~-------~~a~~~~- 210 (432)
.++...++.+|++|||||+++...-+....| ..+.. .++|+|||+||+|+.... .+... .+++.++
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~--~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA--AGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh--cCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCC
Confidence 9998899999999999999875322222222 22222 468999999999995421 12111 1223333
Q ss_pred -CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 211 -MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 211 -~~~~evSAktg~nI~elf~~L~~~ 234 (432)
++++++||++|.||+++|++|...
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhh
Confidence 689999999999999999998753
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=4.1e-15 Score=131.88 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=92.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc-----
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR----- 136 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~----- 136 (432)
+|+++|++|+|||||++.+ .++. .........+. ......+..++ .+.+|||+|...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l-~~~~---------~~~~~~~~~~~-----t~~~~~~~~~~---~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 1 EIAFAGRSNVGKSSLINAL-TNRK---------KLARTSKTPGK-----TQLINFFNVND---KFRLVDLPGYGYAKVSK 62 (170)
T ss_pred CEEEEcCCCCCHHHHHHHH-hcCC---------ceeeecCCCCc-----ceeEEEEEccC---eEEEecCCCccccccCH
Confidence 4799999999999999998 2111 11112222221 11122223333 789999999432
Q ss_pred -----cchhhhhccc---CceEEEEEEeCCCCCChh--hHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHHHHH
Q psy3450 137 -----FCTIIRSYSR---GAQGILLVYDITNKWSFD--GIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTREAEM 204 (432)
Q Consensus 137 -----~~~l~~~~~~---~ad~iIlV~Dvt~~~Sf~--~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee~~~ 204 (432)
+......|+. ..+++++++|.++..+.. .+.+|+... +.|+++|+||+|+....+. .......
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~ 137 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKK 137 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHH
Confidence 3344445554 457889999988764322 234444432 3799999999998532211 1122222
Q ss_pred HHH--hcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 205 YAI--KNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 205 ~a~--~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
..+ ....+++++||+++.++++++++|.+.
T Consensus 138 ~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 138 ELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 232 234589999999999999999999875
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.62 E-value=3.4e-15 Score=140.23 Aligned_cols=162 Identities=16% Similarity=0.064 Sum_probs=96.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCccccc----------------CCCCcCccccCCCccccccceeEEEEEECCeEEE
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWL----------------DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVK 125 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~----------------~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~ 125 (432)
+|+++|.+|+|||||+++|+.......... .........+.......|++.....+..++ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999843322211000 000000000000011123344444444444 46
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc----CHHH
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV----TTRE 201 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v----~~ee 201 (432)
+.||||||+++|.......++.+|++|+|+|+++...-+ ...+...+... ...++|+|+||+|+...... ..++
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 789999999888665566789999999999998764222 22222222222 22457889999998642211 1234
Q ss_pred HHHHHHhcCC---cEEEEcCCCCCCHHHH
Q psy3450 202 AEMYAIKNQM---AFFEVSPLCDFNIRES 227 (432)
Q Consensus 202 ~~~~a~~~~~---~~~evSAktg~nI~el 227 (432)
...+++.++. +++++||++|.|+++.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 4555566663 5899999999998743
No 203
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=147.59 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=109.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
..-+|++++|.||||||||+|.|...++-. .+.-.| ||.|.....+.++| +.+.+.||+|..+-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AI-----------VTdI~G---TTRDviee~i~i~G--~pv~l~DTAGiRet 278 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAI-----------VTDIAG---TTRDVIEEDINLNG--IPVRLVDTAGIRET 278 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceE-----------ecCCCC---CccceEEEEEEECC--EEEEEEecCCcccC
Confidence 345899999999999999999984433332 223334 34477778888999 56799999998644
Q ss_pred chhh--------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc
Q psy3450 138 CTII--------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN 209 (432)
Q Consensus 138 ~~l~--------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~ 209 (432)
.... ...+++||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.||..+..... .....
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~ 349 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELES-----EKLAN 349 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccch-----hhccC
Confidence 3322 2457899999999999986332222 1122 2335689999999999965433111 11122
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+.+++.+||++|.|++++.+.|.+.+...
T Consensus 350 ~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 GDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 34789999999999999999999888554
No 204
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.60 E-value=5.1e-15 Score=158.37 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=99.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEE-------EEEECCeEEEEEEEeCCCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT-------TILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~-------~i~i~~~~v~l~i~Dt~G~ 134 (432)
-|+++|++++|||||+++| .+..+.... . ...+..+|.+.-..+.... ...++.....+.||||||+
T Consensus 6 iV~IiG~~d~GKTSLln~l-~~~~v~~~e-~----ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKI-RGSAVAKRE-A----GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred EEEEECCCCCCHHHHHHHH-hcccccccc-C----CceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 4899999999999999997 433332111 0 1112223311100010000 0111111124899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc------------CH
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV------------TT 199 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v------------~~ 199 (432)
+.|..++..+++.+|++|+|||+++. .+++.+. .++. .++|+++|+||+|+...... ..
T Consensus 80 e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~ 153 (590)
T TIGR00491 80 EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQE 153 (590)
T ss_pred HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhh
Confidence 99999999999999999999999974 4444332 2222 36899999999999532100 00
Q ss_pred HH------------HHHHHH------------hc--CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 200 RE------------AEMYAI------------KN--QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 200 ee------------~~~~a~------------~~--~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+. ...+++ .+ ..+++++||++|.|++++++++....
T Consensus 154 ~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 154 IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 001111 11 25899999999999999999887544
No 205
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.60 E-value=6.3e-15 Score=136.03 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=106.9
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCccc----------ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEE
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRF----------WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQL 128 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~----------~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i 128 (432)
...+|+++|..++|||||+.+|......... ......+... ..+++.....+..+.....+.|
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~ti~~~~~~~~~~~~~~~i~~ 74 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERER-------GITIDLSFISFEKNENNRKITL 74 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHC-------TSSSSSEEEEEEBTESSEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhc-------ccccccccccccccccccceee
Confidence 3578999999999999999998322211000 0000000011 1123444444441234467899
Q ss_pred EeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc-cCHHHHH-HHH
Q psy3450 129 WDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT-VTTREAE-MYA 206 (432)
Q Consensus 129 ~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~-v~~ee~~-~~a 206 (432)
+||||+.+|.......++.+|++|+|+|+.+..... ..+.+..+... ++|+++|.||+|+...+. ...++.. .+.
T Consensus 75 iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 75 IDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLL 151 (188)
T ss_dssp EEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccceecccccceeeeecccccccc-ccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhc
Confidence 999999998777777789999999999998764433 23444444443 478999999999862111 0111222 333
Q ss_pred HhcC------CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 207 IKNQ------MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 207 ~~~~------~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+..+ ++++.+||++|.|++++++.|.+.+
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 3332 4799999999999999999998765
No 206
>KOG0072|consensus
Probab=99.59 E-value=1.7e-15 Score=130.71 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=113.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+...+++++|-.|+|||+++.++ .-+... ...|++| +...++.. ++.++++||..|+...
T Consensus 16 e~e~rililgldGaGkttIlyrl----------qvgevv-ttkPtig-------fnve~v~y--KNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRL----------QVGEVV-TTKPTIG-------FNVETVPY--KNLKFQVWDLGGQTSI 75 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEc----------ccCccc-ccCCCCC-------cCcccccc--ccccceeeEccCcccc
Confidence 35679999999999999999987 222211 2345554 33343333 5688999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHH-----HHHHhcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAE-----MYAIKNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~-----~~a~~~~ 210 (432)
+..|+.||.+.|++|+|+|.+|.+...-.. +++..+.+.. .+..+++++||.|... + ....|+. .-.+..-
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-~-~t~~E~~~~L~l~~Lk~r~ 153 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-A-LTRSEVLKMLGLQKLKDRI 153 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-h-hhHHHHHHHhChHHHhhhe
Confidence 999999999999999999999987655543 3333333322 4577899999999743 2 2222221 1122233
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+.+|++||.+|+|+++.++||.+.+..
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHHhc
Confidence 689999999999999999999998854
No 207
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.58 E-value=1.6e-14 Score=136.02 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=80.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccC---------CCCcCccccCCCccccccceeEEEEEE---CCeEEEEEEE
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLD---------GSSESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLW 129 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~---------~~~~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~ 129 (432)
+|+++|..++|||||+++|...........+ .........++ ++......+.+ ++..+.+.+|
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~gi-----ti~~~~~~~~~~~~~~~~~~i~ii 76 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGI-----SIKSSPISLVLPDSKGKSYLFNII 76 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCc-----cccccceeEEEEcCCCCEEEEEEE
Confidence 5899999999999999998332211110000 00000000111 12222222222 3567899999
Q ss_pred eCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 130 Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
||||+++|......+++.+|++|+|+|+++..++.. ..|+..+.. .++|+++|+||+|+.
T Consensus 77 DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 77 DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred ECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 999999998888888999999999999998776643 445554433 348999999999974
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=7.2e-14 Score=125.95 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=118.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
...||+|+|+.++||||++.++ ................ +-+...+|+....-.+.+++ ...+.++|||||++|.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~-s~k~~v~t~~~~~~~s----~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRAL-SDKPLVITEADASSVS----GKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHh-hccccceeeccccccc----cccccceeEeecccceEEcC-cceEEEecCCCcHHHH
Confidence 4579999999999999999997 2222111101110100 01111233333333444444 3457999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc--CCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN--QMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~--~~~~~ev 216 (432)
-+|..+.+++++.|+++|.+++..| +....++.+....+ +|++|+.||.||.+. .+.+++.++.+.. ..+.+++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeee
Confidence 9999999999999999999999988 55566666655544 999999999999653 4556666655544 7899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRR 234 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~ 234 (432)
+|..+.+..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998888765
No 209
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=3.9e-14 Score=152.13 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=111.3
Q ss_pred EEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+|+++|..++|||||+++|+.. +.+..............+..-....|+......+..+ .++++||||||+++|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--GTKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--CEEEEEEECCCHHHHHHH
Confidence 6899999999999999998432 3332211000000000000000011233333344444 478899999999999888
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc-CHHHHHHHHH-------hcCCc
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV-TTREAEMYAI-------KNQMA 212 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v-~~ee~~~~a~-------~~~~~ 212 (432)
...+++.+|++|||+|+++.. ......|+..+... ++|+|+|+||+|+...+.. ..++..++.. +..++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 889999999999999998743 44556777776654 5899999999998653321 1233333332 23578
Q ss_pred EEEEcCCCCC----------CHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDF----------NIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~----------nI~elf~~L~~~i 235 (432)
++.+||++|. |++.+|+.+++.+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9999999996 7999999998876
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.54 E-value=4e-14 Score=146.17 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cCHH
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VTTR 200 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~~e 200 (432)
...+.+|||||+++|...+...+..+|++|+|+|+++........+.+..+... ...|+++|+||+|+.+... ...+
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHHHHHHH
Confidence 357899999999998776667778899999999998653112223333333322 2247899999999965322 1234
Q ss_pred HHHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 201 EAEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 201 e~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++.++.+.. +++++++||++|.|+++++++|...+
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 444444433 56899999999999999999998765
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=8.2e-14 Score=122.52 Aligned_cols=135 Identities=23% Similarity=0.239 Sum_probs=93.3
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc----cc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG----RF 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e----~~ 137 (432)
||++||+.|+|||||+++| ........ ++..+.+.+ .++||||.- .|
T Consensus 3 rimliG~~g~GKTTL~q~L----------~~~~~~~~--------------KTq~i~~~~-----~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQAL----------NGEEIRYK--------------KTQAIEYYD-----NTIDTPGEYIENPRF 53 (143)
T ss_pred eEEEECCCCCCHHHHHHHH----------cCCCCCcC--------------ccceeEecc-----cEEECChhheeCHHH
Confidence 7999999999999999998 22211111 111222233 568999953 12
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~ev 216 (432)
....-....+||++++|.|.+++.+.-. ..+.... +.|+|-|.||+|+.. .....+.++++.+..|+ .+|++
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~v 126 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEV 126 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc-CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEE
Confidence 2222234478999999999998754221 1122222 379999999999973 23456778888888887 78999
Q ss_pred cCCCCCCHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELS 232 (432)
Q Consensus 217 SAktg~nI~elf~~L~ 232 (432)
|+.+|+||+++.++|-
T Consensus 127 S~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 127 SAVTGEGIEELKDYLE 142 (143)
T ss_pred ECCCCcCHHHHHHHHh
Confidence 9999999999999874
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.53 E-value=6.4e-14 Score=144.78 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=100.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcccccc---------ceeEEEEEEC--C----
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML---------AYKTTTILLD--G---- 121 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~ti---------d~~~~~i~i~--~---- 121 (432)
..+.++|+++|..++|||||+.+| .+. +... .....++..+...+...... +.+.+....+ +
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L-~~~-~~d~-~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQAL-TGV-WTDR-HSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHh-hCe-eccc-CHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 455689999999999999999987 221 1100 00000011111111000000 0111111111 1
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--C
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--T 198 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~ 198 (432)
...++.||||||+++|..........+|++++|+|++++. .-+... .+..+... ...|+++|+||+|+.++... .
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII-GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc-CCCcEEEEEEeeccccchhHHHH
Confidence 1357899999999887554334445679999999999653 122112 22222222 22468999999999653221 1
Q ss_pred HHHHHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 199 TREAEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 199 ~ee~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+++..+++.. +.+++++||++|.|++++++.|...+
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 23444454432 46899999999999999999998765
No 213
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=139.61 Aligned_cols=151 Identities=18% Similarity=0.106 Sum_probs=100.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc--
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC-- 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~-- 138 (432)
..|+++|.||||||||.||| .+.+.... ....|.+ -|.......+.+.. +.++||+|.+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL-~g~r~AIV----------~D~pGvT---RDr~y~~~~~~~~~--f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRL-TGRRIAIV----------SDTPGVT---RDRIYGDAEWLGRE--FILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHH-hCCeeeEe----------ecCCCCc---cCCccceeEEcCce--EEEEECCCCCcCCch
Confidence 46999999999999999997 44443322 1222322 24444455566655 7999999987432
Q ss_pred h----h---hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 139 T----I---IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 139 ~----l---~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
. + ....+..||++|||+|....-+-++ ....+.++ ..+.|++||.||+|-.. .++.+.+| -.+|+
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr--~~~kpviLvvNK~D~~~----~e~~~~ef-yslG~ 139 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPAD-EEIAKILR--RSKKPVILVVNKIDNLK----AEELAYEF-YSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHH--hcCCCEEEEEEcccCch----hhhhHHHH-HhcCC
Confidence 1 1 2235689999999999877433222 12222223 24589999999999642 11222223 24555
Q ss_pred -cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 212 -AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 212 -~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++.+||..|.|+.++.+++++.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 789999999999999999999987
No 214
>PRK10218 GTP-binding protein; Provisional
Probab=99.52 E-value=1.9e-13 Score=146.89 Aligned_cols=169 Identities=13% Similarity=0.120 Sum_probs=111.0
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCcc---ccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESPF---CSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~~---~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
..-+|+++|..++|||||+++|... +.|............. ....| +.+..+...++.+.+++++|||||+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erG-----iTi~~~~~~i~~~~~~inliDTPG~ 78 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERG-----ITILAKNTAIKWNDYRINIVDTPGH 78 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCc-----eEEEEEEEEEecCCEEEEEEECCCc
Confidence 3568999999999999999998431 3332211100000000 01111 3444444555556688999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc-cCHHHHHHHHH------
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT-VTTREAEMYAI------ 207 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~-v~~ee~~~~a~------ 207 (432)
.+|...+..+++.+|++|+|+|+++....+ ...++..+.. .++|+++|.||+|+...+. ...+++.++..
T Consensus 79 ~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 79 ADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred chhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 999999999999999999999998754333 2344444433 3589999999999864321 11223333322
Q ss_pred -hcCCcEEEEcCCCCC----------CHHHHHHHHHHHH
Q psy3450 208 -KNQMAFFEVSPLCDF----------NIRESFTELSRRA 235 (432)
Q Consensus 208 -~~~~~~~evSAktg~----------nI~elf~~L~~~i 235 (432)
+..++++.+||++|. ++..+++.+++.+
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 234789999999998 5788888877766
No 215
>COG2262 HflX GTPases [General function prediction only]
Probab=99.52 E-value=3.1e-13 Score=135.59 Aligned_cols=199 Identities=16% Similarity=0.112 Sum_probs=130.1
Q ss_pred EecCCCcccce----------echhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCccccc
Q psy3450 22 VGDSDVGKQEI----------LSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWL 91 (432)
Q Consensus 22 iGd~gvGKssl----------l~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~ 91 (432)
+|..|.|.+.+ +.+...+|... ...+..............|.++|-.|+|||||+|++.....+..
T Consensus 145 iG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v-~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--- 220 (411)
T COG2262 145 IGFRGPGETQLETDRRRIRRRIAKLKRELENV-EKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVA--- 220 (411)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecc---
Confidence 57778888777 22333333332 34444445555556677999999999999999999833222221
Q ss_pred CCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc--cchhhhh------cccCceEEEEEEeCCCCCCh
Q psy3450 92 DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR--FCTIIRS------YSRGAQGILLVYDITNKWSF 163 (432)
Q Consensus 92 ~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~--~~~l~~~------~~~~ad~iIlV~Dvt~~~Sf 163 (432)
.....|.+...+.+.+.+ ...+.+-||.|--+ -..+... -...+|++++|+|++++...
T Consensus 221 ------------d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~ 287 (411)
T COG2262 221 ------------DQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL 287 (411)
T ss_pred ------------ccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH
Confidence 112234566677777775 23468899999421 1122222 23689999999999999766
Q ss_pred hhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCc
Q psy3450 164 DGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNGME 242 (432)
Q Consensus 164 ~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~ 242 (432)
+.+..-.+.+.+.. .++|+|+|.||+|+..+.. ....+....-..+.+||++|.|++.+++.|.+.+.......
T Consensus 288 ~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 288 EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcccce
Confidence 66665555555543 5689999999999754322 11112111115889999999999999999999886544333
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.52 E-value=3.3e-13 Score=125.73 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=94.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCC------CcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESR------FPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~------~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.++|+++|..++|||||+++|+.... ......-.........+ .+++. ..+.+..+..++.|+||||
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg-----~Ti~~--~~~~~~~~~~~i~~iDtPG 74 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG-----ITINT--AHVEYETANRHYAHVDCPG 74 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC-----ccEEe--eeeEecCCCeEEEEEECcC
Confidence 47899999999999999999843210 00000000000001111 12232 2333444456789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc---CHHHHHHHHHhc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV---TTREAEMYAIKN 209 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v---~~ee~~~~a~~~ 209 (432)
...|.......+..+|++++|+|+.....-+ ..+.+..+... ++| +|+|.||+|+..+.+. ..+++..+..+.
T Consensus 75 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 75 HADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 9887666666778999999999988653222 23344444443 356 7899999998532221 123455555544
Q ss_pred C-----CcEEEEcCCCCCCH
Q psy3450 210 Q-----MAFFEVSPLCDFNI 224 (432)
Q Consensus 210 ~-----~~~~evSAktg~nI 224 (432)
+ ++++.+||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 3 68999999999985
No 217
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=99.51 E-value=5.9e-15 Score=101.78 Aligned_cols=41 Identities=68% Similarity=1.100 Sum_probs=39.3
Q ss_pred hhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhccc
Q psy3450 316 VISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTS 356 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
|.|||++||++|+.||+..+||+||||..||++||+|+|++
T Consensus 3 ~~SLQ~LCR~~I~~~t~~~~I~~LPLP~~Lk~yLkey~~~~ 43 (43)
T cd03742 3 VLSLQDLCCRAIVSCTPVYLIDKLPLPVSIKSHLKSFAMAN 43 (43)
T ss_pred cccHHHHHHHHHHHhCCcchhhhCCCCHHHHHHHHhccccC
Confidence 57999999999999999999999999999999999999974
No 218
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=4.1e-13 Score=128.85 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=80.6
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCccc---ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRF---WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~---~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+|+++|..|+|||||++++......... ...+.....+.+.......++......+.. +..++.+|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~--~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW--EDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE--CCEEEEEEeCCCccchH
Confidence 4789999999999999998432211100 000000000000000001122333333333 45778999999999998
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
..+..+++.+|++|+|+|+++.... ....|+..+... ++|+++++||+|+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence 8888899999999999999987543 335566655543 58999999999985
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.49 E-value=2.2e-13 Score=146.30 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=97.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeE-----E-----EEEEEe
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR-----V-----KLQLWD 130 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~-----v-----~l~i~D 130 (432)
..|+++|.+++|||||+++| .+..+... ..+ ..+..+|.+.-..+.... ..+.. . .+.|||
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l-~~~~v~~~-~~g----~itq~ig~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~iD 77 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKI-RGTAVAAK-EAG----GITQHIGATEVPIDVIEK---IAGPLKKPLPIKLKIPGLLFID 77 (586)
T ss_pred cEEEEECCCCCCHHHHHHHH-hCcccccC-CCC----ceEEeeceeecccccccc---ccceeccccccccccCCEEEEE
Confidence 36999999999999999997 32222111 111 111122211000000000 00111 1 268999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCC---CCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc----C-----
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITN---KWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV----T----- 198 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~---~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v----~----- 198 (432)
|||++.|..++...++.+|++|+|+|+++ +.+++.+. .+.. .++|+++++||+|+...... .
T Consensus 78 TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 78 TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 99999999988888899999999999997 44554443 2222 36899999999998521110 0
Q ss_pred -------HH-------HHHHHHHhc---------------CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 199 -------TR-------EAEMYAIKN---------------QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 199 -------~e-------e~~~~a~~~---------------~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+ +...+..+. ..+++++||++|.|++++++.+....
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 011111111 25799999999999999998886543
No 220
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.49 E-value=3.4e-13 Score=145.53 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=100.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
-|.++|..++|||||+++|. +... .........+ .|++.....+...+ ...+.||||||+++|....
T Consensus 2 ii~~~GhvdhGKTtLi~aLt-g~~~------dr~~eE~~rG-----iTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT-GVNA------DRLPEEKKRG-----MTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh-CCCC------ccchhcccCC-----ceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHH
Confidence 47899999999999999982 1110 0011111111 12333333333322 2347999999999986665
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc--CHHHHHHHHHhcC---CcEEE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV--TTREAEMYAIKNQ---MAFFE 215 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v--~~ee~~~~a~~~~---~~~~e 215 (432)
...+.++|++++|+|+++...- ...+.+..+... ++| ++||+||+|+.++... ..+++.++....+ .++++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~-qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMA-QTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 6668899999999999874221 112223333322 345 5799999999653222 1234455555444 68999
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i 235 (432)
+||++|.|++++++.|.+..
T Consensus 146 VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhh
Confidence 99999999999999998654
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.48 E-value=1.8e-13 Score=129.71 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=93.4
Q ss_pred EEEEeCcccchhHHHHHhhhcC-CCCccccc---------CCCC------cCccccCCCccccccceeEEEEEECCeEEE
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLE-SRFPRFWL---------DGSS------ESPFCSGSGKYDDMLAYKTTTILLDGKRVK 125 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~-~~~~~~~~---------~~~~------~~~~~~~ig~~~~tid~~~~~i~i~~~~v~ 125 (432)
.|+++|..++|||||+.+|+.. +....... .+.. .............|++.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 4799999999999999998322 11110000 0000 00000111111233444445555554 67
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCC---hh---hHHHHHHHHHhhCCCCcEEEEEECccCCCC--ccc
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS---FD---GIDRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTV 197 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~S---f~---~l~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v 197 (432)
+.+|||||+..|.......++.+|++|+|+|+++... |. .....+.... .....|+++|+||+|+... ...
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCCCeEEEEEEccccccccccHH
Confidence 8999999998776655566788999999999988421 11 1222222222 2233689999999999621 111
Q ss_pred C----HHHHHHHHHhcC-----CcEEEEcCCCCCCHH
Q psy3450 198 T----TREAEMYAIKNQ-----MAFFEVSPLCDFNIR 225 (432)
Q Consensus 198 ~----~ee~~~~a~~~~-----~~~~evSAktg~nI~ 225 (432)
. .+++..+.+..+ ++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 122233344433 579999999999987
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.47 E-value=8.7e-13 Score=122.87 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=93.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|+|||||+|.++... ++.. .....+...++... ..+.. +....+.+|||+|......
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~-~~~~---------~~~~~~~~~~t~~~--~~~~~-~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVG-HEEE---------GAAPTGVVETTMKR--TPYPH-PKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccC-CCCC---------CccccCccccccCc--eeeec-CCCCCceEEeCCCCCcccC
Confidence 3799999999999999999983322 1110 00111100011111 11111 1123689999999864322
Q ss_pred hhhhc-----ccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcc-----------cCHHHH
Q psy3450 140 IIRSY-----SRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRT-----------VTTREA 202 (432)
Q Consensus 140 l~~~~-----~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~-----------v~~ee~ 202 (432)
....| +.++|++++|.| .+|... ..|++.+.+. +.|+++|+||+|+..... ...++.
T Consensus 68 ~~~~~l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i 141 (197)
T cd04104 68 PPDDYLEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEI 141 (197)
T ss_pred CHHHHHHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHH
Confidence 22222 577899988843 234444 5566666665 479999999999842111 111122
Q ss_pred HHHHH----hcC---CcEEEEcCC--CCCCHHHHHHHHHHHHhh
Q psy3450 203 EMYAI----KNQ---MAFFEVSPL--CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 203 ~~~a~----~~~---~~~~evSAk--tg~nI~elf~~L~~~i~~ 237 (432)
.+.+. ..+ -++|.+|+. .+.|+..+.+.++..+-+
T Consensus 142 ~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 142 RDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 22221 212 378999998 678999999999998854
No 223
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=5.3e-13 Score=130.92 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=92.2
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..++|+++|++|+|||||+|+|+....................+. .++.....+..+|..+++.+|||||...+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~-----~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTV-----EIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCce-----EEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 568999999999999999999855443322110000000111111 134455566677888999999999943221
Q ss_pred --------------------------hhhhhccc--CceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECc
Q psy3450 139 --------------------------TIIRSYSR--GAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 139 --------------------------~l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
..++..+. .+|+++++++.+.. .+... .+.+..+. .++|+++|+||+
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~ 153 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKA 153 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECC
Confidence 11113333 46777777776542 22222 23334443 358999999999
Q ss_pred cCCCC--cccCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 190 HLAFN--RTVTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 190 DL~~~--r~v~~ee~~~~a~~~~~~~~evSAk 219 (432)
|+..+ .....+.+.+.++.+++++|.....
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 98542 2334455677788889998877653
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.45 E-value=1e-12 Score=135.31 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=101.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcC------CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLE------SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~------~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
..+.++|+++|..++|||||+++|... .++...............++ |++.. ...+.....++.|+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGi-----T~~~~--~~~~~~~~~~i~~iD 81 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGI-----TINTS--HVEYETANRHYAHVD 81 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCc-----eEEEe--eeEEcCCCcEEEEEE
Confidence 345689999999999999999998431 11110000011111111111 22322 233333445679999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEE-EEEECccCCCCcc---cCHHHHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKV-LVGNRLHLAFNRT---VTTREAEMYA 206 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiI-LVgNK~DL~~~r~---v~~ee~~~~a 206 (432)
|||+++|......-+..+|++++|+|+.+...-+ ..+++..+.. .++|.+ +|.||+|+.++.+ ...+++..+.
T Consensus 82 tPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 9999887555555667899999999998753222 2334444443 347865 5799999964221 1123455566
Q ss_pred HhcC-----CcEEEEcCCCCC----------CHHHHHHHHHHH
Q psy3450 207 IKNQ-----MAFFEVSPLCDF----------NIRESFTELSRR 234 (432)
Q Consensus 207 ~~~~-----~~~~evSAktg~----------nI~elf~~L~~~ 234 (432)
+.++ ++++++||++|. ++.++++.|...
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 5543 679999999985 456666666554
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=1.2e-12 Score=134.69 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=94.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC------CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE------SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~------~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
.+.++|+++|..++|||||+++|... .++...+.-.........+ .|++. ..+.++....++.||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG-----~Ti~~--~~~~~~~~~~~~~liDt 82 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG-----ITINT--AHVEYETENRHYAHVDC 82 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC-----cceee--EEEEEcCCCEEEEEEEC
Confidence 45689999999999999999998311 1110000000000011111 22333 33344445567899999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEE-EEEECccCCCCcccC---HHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKV-LVGNRLHLAFNRTVT---TREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiI-LVgNK~DL~~~r~v~---~ee~~~~a~ 207 (432)
||+++|..........+|++++|+|+++....+. .+.+..+... ++|.+ +|.||+|+.++.+.. .+++.++++
T Consensus 83 pGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 83 PGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 9999886544444567899999999987433222 2333334333 46755 689999986533221 235666666
Q ss_pred hcC-----CcEEEEcCCCCC
Q psy3450 208 KNQ-----MAFFEVSPLCDF 222 (432)
Q Consensus 208 ~~~-----~~~~evSAktg~ 222 (432)
..+ ++++++||++|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 654 689999999885
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.42 E-value=1.8e-12 Score=123.09 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=85.3
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcC-ccccCCCccccccceeEEEEEEC--------CeEEEEEEEeCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSES-PFCSGSGKYDDMLAYKTTTILLD--------GKRVKLQLWDTS 132 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~-~~~~~ig~~~~tid~~~~~i~i~--------~~~v~l~i~Dt~ 132 (432)
+|+++|..++|||||+.+|............+.... ...........++......+.++ ++.+.++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999843222110000000000 00000000001122222223333 457899999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC-CCcccCHHHHH
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA-FNRTVTTREAE 203 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~-~~r~v~~ee~~ 203 (432)
|+++|......+++.+|++|+|+|+++..+.+... .+..... .++|+++|+||+|+. .+..++.+++.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~--~~~p~ilviNKiD~~~~e~~~~~~~~~ 150 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK--ERVKPVLVINKIDRLILELKLSPEEAY 150 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCcchhhhcCCHHHHH
Confidence 99999998889999999999999999877665433 2333322 357999999999975 34445555443
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.41 E-value=2.9e-12 Score=131.82 Aligned_cols=168 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCC------CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLES------RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~------~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
...++|+++|..++|||||+++|.... .+.....-.........+ .|++. ..+.++....++.||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg-----~T~~~--~~~~~~~~~~~i~~iDt 82 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG-----ITINT--AHVEYETEKRHYAHVDC 82 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcC-----ccEEE--EeeEecCCCcEEEEEEC
Confidence 446899999999999999999983211 000000000000011111 12233 22334344456799999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCcccC---HHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTVT---TREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v~---~ee~~~~a~ 207 (432)
||+++|......-+..+|++++|+|+++...-+ ..+++..+... ++| +|+|.||+|+.++.+.. .+++.++.+
T Consensus 83 PGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 999887554445557889999999988643222 23334444433 477 67899999986432221 234555555
Q ss_pred hcC-----CcEEEEcCCCCC--------CHHHHHHHHHHHH
Q psy3450 208 KNQ-----MAFFEVSPLCDF--------NIRESFTELSRRA 235 (432)
Q Consensus 208 ~~~-----~~~~evSAktg~--------nI~elf~~L~~~i 235 (432)
..+ ++++++||++|. ++.++++.+.+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 554 589999999984 4667776666554
No 228
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.41 E-value=3.4e-12 Score=131.01 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHH-HHHHHHHHHhhhcCCcccccccCCCCCCCcC
Q psy3450 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE-SFTELSRRALQRNGMERLWRSNKVGRKPLIN 257 (432)
Q Consensus 179 ~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~e-lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
..|+|+|.||.|+...+ +....+.+..+..++.+||+.+.++++ +.+.+++.+ +...++++
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l--------------p~~p~~~~ 278 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYI--------------PGDSDFEI 278 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC--------------CCCCccCc
Confidence 37999999999975322 112223322345799999999999999 777777766 45567777
Q ss_pred CCCchhHHHH
Q psy3450 258 FESFTELSRR 267 (432)
Q Consensus 258 ~~s~~~~~~r 267 (432)
.+.+++..++
T Consensus 279 ~d~ltd~~~r 288 (396)
T PRK09602 279 LGELSEKQKK 288 (396)
T ss_pred cccCCHHHHH
Confidence 7778877766
No 229
>KOG1489|consensus
Probab=99.41 E-value=2.2e-12 Score=125.21 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=105.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccc-cccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD-DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~-~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
-|-+||-||+|||||++.+.. ..|.+++|. ||+....-++.+++ ..++.+-|.||.-+-..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~----------------AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSR----------------AKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHM 260 (366)
T ss_pred ccceecCCCCcHHHHHHHhhc----------------cCCcccccceeeeccccceeeccc-cceeEeccCccccccccc
Confidence 366999999999999999721 122333332 22333333334444 234899999997543333
Q ss_pred h----hh---cccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 141 I----RS---YSRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 141 ~----~~---~~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
. .. .++.++..++|+|++.. ..++.++.+..++..+. .+.|.+||+||+|+.+.. .+...++++
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~ 337 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAK 337 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHH
Confidence 2 23 34789999999999988 78888877777776654 578999999999985211 122356666
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHH
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~ 233 (432)
...- .++++||+++++++++++.|-+
T Consensus 338 ~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCCcEEEeeeccccchHHHHHHHhh
Confidence 6654 4999999999999999887754
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.40 E-value=4.9e-12 Score=120.43 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCcccchhhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TT 199 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ 199 (432)
..+.++||||+++|.......+ ..+|++++|+|+.....- ...+++..+... ++|+++|.||+|+.++... ..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHH
Confidence 4579999999988855433333 368999999998875432 224455555443 4899999999998543211 11
Q ss_pred HHHHHHHHh--------------------------cCCcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 200 REAEMYAIK--------------------------NQMAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 200 ee~~~~a~~--------------------------~~~~~~evSAktg~nI~elf~~L~~ 233 (432)
+++.++.+. ...++|.+||.+|.|++++.+.|..
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222222221 1248999999999999999988753
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=6e-12 Score=122.90 Aligned_cols=127 Identities=14% Similarity=0.185 Sum_probs=80.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCC-CCcccc-c-----CCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLES-RFPRFW-L-----DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~-~~~~~~-~-----~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+|+++|.+|+|||||++++.... ...... . .+.....+.+. +....+.+......++...+++++|||||+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~--e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEI--EKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHH--HHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 68999999999999999983321 111000 0 01111111000 000112333444445555678899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
++|......+++.+|++|+|+|+++.... ....|+..... .++|+++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 98887677788999999999999876432 22344444333 3589999999999854
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3e-12 Score=125.15 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=117.6
Q ss_pred CcccceechhhhHHHHHhhhcCcccccccccc-ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCc
Q psy3450 27 VGKQEILSGYKLELTAWLMETKPVVATQKQYD-YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGK 105 (432)
Q Consensus 27 vGKssll~r~~~~l~~~~~~~~~~~~~~~~~~-~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~ 105 (432)
.|+-+-+.+..+.-+.++.+-+.....-...+ ....|+|.|.||||||||++.+.. ..|.+..
T Consensus 134 ~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~----------------AkpEvA~ 197 (346)
T COG1084 134 FGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT----------------AKPEVAP 197 (346)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhc----------------CCCccCC
Confidence 45444444444444555554443333333444 456899999999999999999711 1122221
Q ss_pred cccccceeEEEEEE---CCeEEEEEEEeCCCCc-----ccchhhhh---cc-cCceEEEEEEeCCCC--CChhhHHHHHH
Q psy3450 106 YDDMLAYKTTTILL---DGKRVKLQLWDTSGQG-----RFCTIIRS---YS-RGAQGILLVYDITNK--WSFDGIDRWLK 171 (432)
Q Consensus 106 ~~~tid~~~~~i~i---~~~~v~l~i~Dt~G~e-----~~~~l~~~---~~-~~ad~iIlV~Dvt~~--~Sf~~l~~~l~ 171 (432)
| .|.++.+.+ +....++|++||||.- +.+.+-.+ .+ .-.++|+|+||.+.. -+.+....++.
T Consensus 198 Y----PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~ 273 (346)
T COG1084 198 Y----PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLE 273 (346)
T ss_pred C----CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHH
Confidence 1 333444433 2334578999999952 11111111 11 236889999999864 45677788888
Q ss_pred HHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc-CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 172 ~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++.... .|+++|.||+|+.+...+ +++......- +.....+++..+.+++.+-..+.....+
T Consensus 274 eIk~~f~-~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 274 EIKELFK-APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred HHHHhcC-CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 9988876 899999999998654333 3333333333 3457788999999999888888776543
No 233
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.37 E-value=1.2e-11 Score=123.54 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=37.9
Q ss_pred CcEEEEEECccCCCCcccCHHHHHHHHHhc-CCcEEEEcCCCCCCHHHHHH-HHHHHH
Q psy3450 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFT-ELSRRA 235 (432)
Q Consensus 180 iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-~~~~~evSAktg~nI~elf~-~L~~~i 235 (432)
.|+|+|+||+|+..... ....+.... ...++.+||+.+.+++++.+ .+.+.+
T Consensus 215 KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 215 KPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 69999999999853221 111222233 45899999999999999998 588877
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.37 E-value=4.4e-12 Score=133.33 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=96.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCccccc----------CCCCc--------CccccCCCccccccceeEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWL----------DGSSE--------SPFCSGSGKYDDMLAYKTTTILL 119 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~----------~~~~~--------~~~~~~ig~~~~tid~~~~~i~i 119 (432)
...++|+++|..++|||||+.+|+.......... .+... ....+.......|++.....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 4569999999999999999999843332211000 11100 000000000112234333333
Q ss_pred CCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH
Q psy3450 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT 199 (432)
Q Consensus 120 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ 199 (432)
.....++.||||||++.|......-+..+|++|+|+|++....-.....| ..+... ...|+|||.||+|+.+.++...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-GIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-CCCceEEEEEeeccccchhHHH
Confidence 33345789999999988855444446899999999998765322111222 112222 1247899999999864222112
Q ss_pred H----HHHHHHHhc----CCcEEEEcCCCCCCHHHHH
Q psy3450 200 R----EAEMYAIKN----QMAFFEVSPLCDFNIRESF 228 (432)
Q Consensus 200 e----e~~~~a~~~----~~~~~evSAktg~nI~elf 228 (432)
+ +...+.+.. ..+++++||++|.|++++-
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2 222333333 3689999999999998753
No 235
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.7e-11 Score=119.49 Aligned_cols=194 Identities=22% Similarity=0.177 Sum_probs=118.3
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
-...|++||.|+||||||++.+.....-...|. .+|.....-.+.++| .++|+.|+||.-+-.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~---------------FTTl~~VPG~l~Y~g--a~IQild~Pgii~ga 124 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYP---------------FTTLEPVPGMLEYKG--AQIQLLDLPGIIEGA 124 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccC---------------ceecccccceEeecC--ceEEEEcCcccccCc
Confidence 346899999999999999999822222111111 122233333445555 678999999864322
Q ss_pred h-------hhhhcccCceEEEEEEeCCCCCC-hhhHHHHHHHH-------------------------------------
Q psy3450 139 T-------IIRSYSRGAQGILLVYDITNKWS-FDGIDRWLKEV------------------------------------- 173 (432)
Q Consensus 139 ~-------l~~~~~~~ad~iIlV~Dvt~~~S-f~~l~~~l~~i------------------------------------- 173 (432)
+ ..-...++||++|+|.|+....+ .+-+.+.++..
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~i 204 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTV 204 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHH
Confidence 2 12245699999999999986554 22222211111
Q ss_pred -------Hh----------------------hCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCH
Q psy3450 174 -------EE----------------------HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNI 224 (432)
Q Consensus 174 -------~~----------------------~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI 224 (432)
+- ...-+|.++|.||+|+.. .++...+.+.. .++.+||+.+.|+
T Consensus 205 r~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nl 277 (365)
T COG1163 205 RAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINL 277 (365)
T ss_pred HHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCH
Confidence 00 001269999999999843 45556565554 8899999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccccccCCCCCCCc-----C------CCCchhHHHHHHHhcccccccccC
Q psy3450 225 RESFTELSRRALQRNGMERLWRSNKVGRKPLI-----N------FESFTELSRRALQRNGMERLWRSN 281 (432)
Q Consensus 225 ~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~-----~------~~s~~~~~~r~l~~~~l~r~~~~~ 281 (432)
+++.+.|.+.+-- .+.... .++..+-+ - .+.+....+.+..+.+..++|...
T Consensus 278 d~L~e~i~~~L~l----iRVYtK-~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkS 340 (365)
T COG1163 278 DELKERIWDVLGL----IRVYTK-PPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKS 340 (365)
T ss_pred HHHHHHHHHhhCe----EEEEec-CCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccC
Confidence 9999999988722 111110 01111111 1 122334556677788899999873
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.35 E-value=6.7e-12 Score=129.66 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=94.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCccccc----------CCCC----c----CccccCCCccccccceeEEEEEECCe
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWL----------DGSS----E----SPFCSGSGKYDDMLAYKTTTILLDGK 122 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~----------~~~~----~----~~~~~~ig~~~~tid~~~~~i~i~~~ 122 (432)
++|+++|..++|||||+.+|+.......... .+.. . ....+.......|++.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 4899999999999999999843322111000 0100 0 000000000112234443444343
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC----
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT---- 198 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~---- 198 (432)
..++.||||||+++|.......+..+|++|+|+|+.....-+....| ..+... ...++++|.||+|+.+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-CCCcEEEEEEecccccchHHHHHHH
Confidence 45789999999998865555567899999999998765332222222 222222 223688999999986422211
Q ss_pred HHHHHHHHHhcC---CcEEEEcCCCCCCHHH
Q psy3450 199 TREAEMYAIKNQ---MAFFEVSPLCDFNIRE 226 (432)
Q Consensus 199 ~ee~~~~a~~~~---~~~~evSAktg~nI~e 226 (432)
.++...+.+..+ ++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333444444 4799999999999986
No 237
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=8.3e-12 Score=132.30 Aligned_cols=157 Identities=19% Similarity=0.220 Sum_probs=112.1
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc-
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC- 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~- 138 (432)
..+|+++|.||||||||.|++...+....+| |+ .|++.+.-.+...++. +++.|.||.....
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNw----------pG-----vTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~ 65 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNW----------PG-----VTVEKKEGKLKYKGHE--IEIVDLPGTYSLTA 65 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCC----------CC-----eeEEEEEEEEEecCce--EEEEeCCCcCCCCC
Confidence 3569999999999999999984444333332 22 3456666667777755 6999999975432
Q ss_pred -----hhhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 139 -----TIIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 139 -----~l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
...+.|+ .+.|++|-|.|++|.+. ++ .+--++.+ -++|++++.|++|..+++.+. -+.+++.+..|+
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR--nL-yltlQLlE--~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGv 139 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATNLER--NL-YLTLQLLE--LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGV 139 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccchHHH--HH-HHHHHHHH--cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCC
Confidence 2333444 46799999999998642 22 12222333 358999999999986654443 345678888999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
|.+++||++|.|++++.+.+.+....+.
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999988764443
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=3e-11 Score=111.17 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=99.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC---
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ--- 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~--- 134 (432)
+...-|+++|.+|||||||||.++....... .+.+.|.+ -....+.++++ +.++|.||-
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr----------tSktPGrT-----q~iNff~~~~~---~~lVDlPGYGyA 83 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLAR----------TSKTPGRT-----QLINFFEVDDE---LRLVDLPGYGYA 83 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceee----------cCCCCCcc-----ceeEEEEecCc---EEEEeCCCcccc
Confidence 3556899999999999999999844333322 22233311 11223334443 689999993
Q ss_pred -------cccchhhhhccc---CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH
Q psy3450 135 -------GRFCTIIRSYSR---GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM 204 (432)
Q Consensus 135 -------e~~~~l~~~~~~---~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~ 204 (432)
+.+..+...|++ +-.+++++.|+.....-.+ .+.++.+.. .++|++||.||+|.....+.. .....
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~-k~l~~ 159 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE--LGIPVIVVLTKADKLKKSERN-KQLNK 159 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEccccCChhHHH-HHHHH
Confidence 344555566764 3578888999877644332 233343333 358999999999986533221 11222
Q ss_pred HHHhc----CCc--EEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 205 YAIKN----QMA--FFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 205 ~a~~~----~~~--~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.++.. ... ++..|+.++.|++++...|.+.+.
T Consensus 160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 33222 222 778899999999999999887763
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=1.1e-11 Score=136.22 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=84.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCC-cc--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRF-PR--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~-~~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
...+|+|+|..++|||||+++|...... .. ....+.+...+.+.......++......+..+ ..++++|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHI 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcH
Confidence 4579999999999999999998432111 00 00000010000000001112233333444444 4678999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh--cCCCEEEEEECCCCCC
Confidence 9988888999999999999999988777665555 33333 3589999999999853
No 240
>CHL00071 tufA elongation factor Tu
Probab=99.33 E-value=1.7e-11 Score=126.72 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=94.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCc------ccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFP------RFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~------~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
...++|+++|.+++|||||+++|+...... ....-......... | .|++.... .+..+..++.|.||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r--g---~T~~~~~~--~~~~~~~~~~~iDt 82 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR--G---ITINTAHV--EYETENRHYAHVDC 82 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC--C---EeEEccEE--EEccCCeEEEEEEC
Confidence 456899999999999999999984321100 00000000111111 1 12232222 23334456789999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc---CHHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV---TTREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v---~~ee~~~~a~ 207 (432)
||+.+|.......+..+|++++|+|+..... ....+.+..+... ++| +|+|.||+|+.+..+. ..+++..+.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 83 PGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred CChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 9988775555556788999999999886532 2223344444433 478 7789999999653221 1234555555
Q ss_pred hcC-----CcEEEEcCCCCCCH
Q psy3450 208 KNQ-----MAFFEVSPLCDFNI 224 (432)
Q Consensus 208 ~~~-----~~~~evSAktg~nI 224 (432)
..+ ++++.+||.+|.|+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HhCCCCCcceEEEcchhhcccc
Confidence 543 68999999999754
No 241
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.32 E-value=2e-11 Score=119.34 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=91.1
Q ss_pred EEEEeCcccchhHHHHHhhhcC-CCCcc--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLE-SRFPR--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~-~~~~~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+|+++|.+|+|||||+++++.. +.... ...++.....+.+.......+++.....+..++ .++.+|||||..+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 4789999999999999998321 11110 000111111111111111223444445555554 677999999998888
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc-ccCHHHHHHHHHhcCC-cEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR-TVTTREAEMYAIKNQM-AFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r-~v~~ee~~~~a~~~~~-~~~ev 216 (432)
..+..+++.+|++|+|+|+.+...-.. ..++..+.. .++|++++.||+|+.... ....+++++......+ ..+++
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pi 155 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPI 155 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecc
Confidence 878889999999999999987543222 334444443 348999999999986421 1112222222222222 46788
Q ss_pred cCCCC
Q psy3450 217 SPLCD 221 (432)
Q Consensus 217 SAktg 221 (432)
|+..+
T Consensus 156 sa~~~ 160 (270)
T cd01886 156 GEEDD 160 (270)
T ss_pred ccCCC
Confidence 88744
No 242
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.31 E-value=7.5e-12 Score=120.71 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=81.2
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
++|..+.+.+++++|++++|||++++. +|+.+.+|+..+.. .++|++||+||+||.+++++..+.+..+. +.++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v 100 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQV 100 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeE
Confidence 678888889999999999999999887 89999999987754 56899999999999765555545555554 578899
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy3450 214 FEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~ 233 (432)
+++||++|.|++++|+.+..
T Consensus 101 ~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEecCCchhHHHHHhhhcC
Confidence 99999999999999998764
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.31 E-value=2.5e-11 Score=126.68 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccc--------------------cCCCCcCccccCCCccccccceeEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW--------------------LDGSSESPFCSGSGKYDDMLAYKTTT 116 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~--------------------~~~~~~~~~~~~ig~~~~tid~~~~~ 116 (432)
.+.++|+++|..++|||||+.+|+.. +...... .-.........+ .|++.. .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rG-----iTi~~~--~ 77 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERG-----ITIDIA--L 77 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcC-----ceEEEE--E
Confidence 34588999999999999999987321 1111100 000000011111 123332 2
Q ss_pred EEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChh-------hHHHHHHHHHhhCCCC-cEEEEEEC
Q psy3450 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD-------GIDRWLKEVEEHAPGV-PKVLVGNR 188 (432)
Q Consensus 117 i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~-------~l~~~l~~i~~~~~~i-PiILVgNK 188 (432)
..+......+.|+||||+++|.......+..+|++|+|+|+++. .|+ ...+.+..+.. .++ ++|+++||
T Consensus 78 ~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNK 154 (447)
T PLN00043 78 WKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNK 154 (447)
T ss_pred EEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEc
Confidence 33444556789999999999988778888999999999999873 333 23333332322 246 47889999
Q ss_pred ccCCCCc--c----cCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHH
Q psy3450 189 LHLAFNR--T----VTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRE 226 (432)
Q Consensus 189 ~DL~~~r--~----v~~ee~~~~a~~~~-----~~~~evSAktg~nI~e 226 (432)
+|+.+.. + ...++++.++++.+ ++|+++||++|.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9985210 0 11345666777665 5799999999999854
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.30 E-value=3.1e-11 Score=128.22 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=80.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcccc-cC----CCCc-CccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPRFW-LD----GSSE-SPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~~~-~~----~~~~-~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
+...+|+|+|..++|||||+++|+. .+...... .. +... ..+.+.. ....+.+....+.++.+.+++++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E--~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEME--KQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHH--HhhCCceeeeeEEEEECCEEEEEEE
Confidence 3456899999999999999999842 12111000 00 0000 0000000 0001223333333334457789999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
|||+++|......+++.+|++|+|+|+++...- ....++..... .++|+++++||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCccc
Confidence 999999887777788999999999999875422 23444444433 368999999999984
No 245
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.30 E-value=5.2e-12 Score=107.17 Aligned_cols=113 Identities=23% Similarity=0.183 Sum_probs=80.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccc-cCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFC-SGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~-~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
+||+++|+.|||||+|+.++ ....| ...+. +++| +..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~-~~~~~---------~~~~~~~t~~--------------------------------~~~ 38 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARF-VQFPF---------DYVPTVFTIG--------------------------------IDV 38 (124)
T ss_pred CEEEEECCCChhHHHHHHHH-hcCCc---------cccCceehhh--------------------------------hhh
Confidence 58999999999999999997 32222 21111 1111 233
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+...+++.++.+++|||.++.++++.+ |...+.... .++|.++++||.|+.+++++..+++. .|+++|+
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~ 108 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSA 108 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhC
Confidence 344677889999999999999998766 887776544 57899999999998544444433333 4567899
Q ss_pred CCCCCHH
Q psy3450 219 LCDFNIR 225 (432)
Q Consensus 219 ktg~nI~ 225 (432)
++|.|+.
T Consensus 109 ~~~~~~~ 115 (124)
T smart00010 109 KTPEEGE 115 (124)
T ss_pred CCcchhh
Confidence 9999884
No 246
>KOG1191|consensus
Probab=99.30 E-value=1.2e-11 Score=126.18 Aligned_cols=166 Identities=23% Similarity=0.183 Sum_probs=108.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc-
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR- 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~- 136 (432)
+..++|+++|+||||||||+|.|... .....++..|+++|.++ ..++++|. .+.+.||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~-----------drsIVSpv~GTTRDaie---a~v~~~G~--~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRE-----------DRSIVSPVPGTTRDAIE---AQVTVNGV--PVRLSDTAGIREE 329 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcC-----------CceEeCCCCCcchhhhe---eEeecCCe--EEEEEeccccccc
Confidence 34489999999999999999998222 22335566676655444 55668884 468899999754
Q ss_pred cchh--------hhhcccCceEEEEEEeC--CCCCChhhHHHHHHHHHhhC-------CCCcEEEEEECccCCCC-cccC
Q psy3450 137 FCTI--------IRSYSRGAQGILLVYDI--TNKWSFDGIDRWLKEVEEHA-------PGVPKVLVGNRLHLAFN-RTVT 198 (432)
Q Consensus 137 ~~~l--------~~~~~~~ad~iIlV~Dv--t~~~Sf~~l~~~l~~i~~~~-------~~iPiILVgNK~DL~~~-r~v~ 198 (432)
-... ....++.+|++++|+|+ ++-++...+.+.++....-. .+.|++++.||+|+..+ ++..
T Consensus 330 ~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~ 409 (531)
T KOG1191|consen 330 SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT 409 (531)
T ss_pred cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc
Confidence 1111 12346789999999999 44444444445554443221 24789999999999643 2222
Q ss_pred HHHHHHHHHhc---CC-cEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 199 TREAEMYAIKN---QM-AFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 199 ~ee~~~~a~~~---~~-~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
... ..+.... .+ ...++|++++++++++.+.+.+.+.....
T Consensus 410 ~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 410 KIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred CCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 111 1111111 13 35569999999999999999988866443
No 247
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.30 E-value=9.2e-12 Score=121.50 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=100.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCccc---ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRF---WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~---~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+|+++|.+|+|||||+++++........ ...+.....+.+..-....++......+..++ +++++|||||..+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 4799999999999999997332111000 00111000000000000112233334444444 668999999998887
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHH-HHHHHHHhcCCcE--EE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTR-EAEMYAIKNQMAF--FE 215 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~e-e~~~~a~~~~~~~--~e 215 (432)
..+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+... ..+ ....+.+.++.++ +.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~--~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE--AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEEE
Confidence 7778889999999999999987655433333 23333 35899999999998643 223 2334444455543 45
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i 235 (432)
+...+|.++..+.+.+....
T Consensus 153 ip~~~~~~~~~~vd~~~~~~ 172 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKA 172 (268)
T ss_pred ecccCCCceeEEEEcccCEE
Confidence 56788888877766665444
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.30 E-value=2.3e-11 Score=132.44 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=95.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccc----------cCCCCcCcc--------ccCCCccccccceeEEEEEEC
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFW----------LDGSSESPF--------CSGSGKYDDMLAYKTTTILLD 120 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~----------~~~~~~~~~--------~~~ig~~~~tid~~~~~i~i~ 120 (432)
..++|+++|.+++|||||+++|+......... ..+.+.... .+.......|++.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 45799999999999999999985433221100 011100000 000000112234333333334
Q ss_pred CeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH-
Q psy3450 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT- 199 (432)
Q Consensus 121 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~- 199 (432)
+ .++.|+||||+++|.......+..+|++|+|+|++....-+. .+.+..+... ...+++||.||+|+.+..+...
T Consensus 103 ~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 103 K--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred C--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-CCCeEEEEEEecccccchhHHHH
Confidence 4 467899999998875544456789999999999976532222 2222222222 2257889999999864211111
Q ss_pred ---HHHHHHHHhcC---CcEEEEcCCCCCCHHH
Q psy3450 200 ---REAEMYAIKNQ---MAFFEVSPLCDFNIRE 226 (432)
Q Consensus 200 ---ee~~~~a~~~~---~~~~evSAktg~nI~e 226 (432)
++...+.++.+ .+++++||++|.|+++
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22333444555 3699999999999975
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.29 E-value=3.1e-11 Score=115.15 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=99.5
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh-
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI- 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l- 140 (432)
||+++|+.++||||+.+.+|.+-... .+...| .|.+.....+...+ .+.+++||.||+..+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----------dT~~L~---~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----------DTLRLE---PTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----------GGGG--------SEEEEEEECTT-SCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----------hccccC---CcCCceEEEEecCC-CcEEEEEEcCCcccccccc
Confidence 89999999999999999874332111 111111 12244444443333 568999999999765433
Q ss_pred ----hhhcccCceEEEEEEeCCCCCChhhH---HHHHHHHHhhCCCCcEEEEEECccCCCC--cccCH----HHHHHHHH
Q psy3450 141 ----IRSYSRGAQGILLVYDITNKWSFDGI---DRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTT----REAEMYAI 207 (432)
Q Consensus 141 ----~~~~~~~ad~iIlV~Dvt~~~Sf~~l---~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~----ee~~~~a~ 207 (432)
....+++++++|+|+|+.+.+-.+++ ...+..+.+..|++.+-+...|+|+..+ |+... +.+.+.+.
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999865544444 4455556677799999999999998542 22111 22333444
Q ss_pred hcC---CcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 208 KNQ---MAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 208 ~~~---~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
..+ +.++.+|--+ +.+-+.|..++..+.
T Consensus 146 ~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 146 DLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred hccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 455 7889998876 578888888887764
No 250
>KOG0077|consensus
Probab=99.28 E-value=6.1e-12 Score=111.44 Aligned_cols=154 Identities=18% Similarity=0.287 Sum_probs=109.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..-|++++|-.|+|||||++.| ..++..+ +-|+. ......+.+.+ ++++.+|.+|+..-+
T Consensus 19 K~gKllFlGLDNAGKTTLLHML-KdDrl~q----------hvPTl-------HPTSE~l~Ig~--m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHML-KDDRLGQ----------HVPTL-------HPTSEELSIGG--MTFTTFDLGGHLQAR 78 (193)
T ss_pred cCceEEEEeecCCchhhHHHHH-ccccccc----------cCCCc-------CCChHHheecC--ceEEEEccccHHHHH
Confidence 3459999999999999999997 2222211 11121 22334445555 678999999998888
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHH---h---c-
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAI---K---N- 209 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~---~---~- 209 (432)
..|..|+..+|++++.+|+-|.+.|.+.++-++.+.... ..+|+++.+||+|.+. ..++++...... . .
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~ 156 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKG 156 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998877666654333 6799999999999853 344444332111 1 1
Q ss_pred -------C---CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 210 -------Q---MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 210 -------~---~~~~evSAktg~nI~elf~~L~~~ 234 (432)
+ +..|.||...+.+--+.|.|+...
T Consensus 157 ~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 157 KVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1 246778888888877888777543
No 251
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=4.9e-11 Score=117.14 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=104.0
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccc-cccceeEEEEEECCeEEEEEEEeCCCCccc----
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD-DMLAYKTTTILLDGKRVKLQLWDTSGQGRF---- 137 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~-~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~---- 137 (432)
|-+||-||+||||||+.+.. ..|.++.|. ||+....-.+.+++ .-.+.+-|.||.-+-
T Consensus 162 VGLVG~PNaGKSTlls~vS~----------------AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSA----------------AKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhh----------------cCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccC
Confidence 56999999999999999711 223333322 22222223333322 234789999996432
Q ss_pred chhhhhc---ccCceEEEEEEeCCCCCC---hhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 138 CTIIRSY---SRGAQGILLVYDITNKWS---FDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 138 ~~l~~~~---~~~ad~iIlV~Dvt~~~S---f~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
..+-..| ++++.++++|.|++..+- .++......++..+. .+.|.+||+||+|+...++...+....+.+.
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence 2222233 467899999999986553 566666677777665 4789999999999654333333333444444
Q ss_pred cCCcEE-EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 209 NQMAFF-EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 209 ~~~~~~-evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.+...+ .+||.++.|++++...+.+.+.+..
T Consensus 305 ~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 305 LGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 444322 2999999999999999998886654
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=99.27 E-value=2.9e-11 Score=126.93 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=96.6
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCC-----CCcccc-cCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEE
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLES-----RFPRFW-LDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLW 129 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~-----~~~~~~-~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~ 129 (432)
...+.++|+++|..++|||||+++|.... .....+ .-+........+ .+++.....+..+ ..++.||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG-----iTi~~~~~~~~~~--~~~i~li 149 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG-----ITINTATVEYETE--NRHYAHV 149 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC-----eeEEEEEEEEecC--CcEEEEE
Confidence 34567899999999999999999984211 111000 000000111111 1223333333333 4567999
Q ss_pred eCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc---CHHHHHHH
Q psy3450 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV---TTREAEMY 205 (432)
Q Consensus 130 Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v---~~ee~~~~ 205 (432)
|+||+++|......-+..+|++++|+|+.+...-+ ..+++..+... ++| +|++.||+|+.+..+. ..+++..+
T Consensus 150 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 150 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 99999988665555667899999999998764322 24444444443 477 7789999999653221 11244455
Q ss_pred HHhc-----CCcEEEEcCCCCCCH
Q psy3450 206 AIKN-----QMAFFEVSPLCDFNI 224 (432)
Q Consensus 206 a~~~-----~~~~~evSAktg~nI 224 (432)
.+.. +++++.+||.+|.|+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 5553 468999999998653
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.25 E-value=8.4e-11 Score=124.94 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcccc-c--CCC---CcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPRFW-L--DGS---SESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~~~-~--~~~---~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
....+|+|+|.+++|||||+++|+. .+...... . .+. ......+.. ....+.+....+.++...+++++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E--~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEME--KQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHH--HhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 4467999999999999999999733 22221100 0 000 000000000 0011233334444555568889999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
|||+..|......+++.+|++|+|+|+++... .....++...+. .++|+++++||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 99999887766778899999999999987421 223445544433 458999999999983
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.24 E-value=1.7e-10 Score=120.44 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=96.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-----CCCcccc-cCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-----SRFPRFW-LDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-----~~~~~~~-~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
...++|+++|..++|||||+++|... ......+ .-.........+ .|++.... .+..+..++.|+||
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG-----iTi~~~~~--~~~~~~~~i~~iDt 131 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG-----ITIATAHV--EYETAKRHYAHVDC 131 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC-----ceeeeeEE--EEcCCCeEEEEEEC
Confidence 45689999999999999999997211 0000000 000000111111 22343333 34444457899999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCcccC---HHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTVT---TREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v~---~ee~~~~a~ 207 (432)
||+++|......-+..+|++++|+|+++...-+ ..+.+..+... ++| +|+|.||+|+.++.+.. .++..++..
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 999887554444556799999999987653222 23333434433 478 47889999996432211 112333333
Q ss_pred hc-----CCcEEEEcCC---CCCC-------HHHHHHHHHHHH
Q psy3450 208 KN-----QMAFFEVSPL---CDFN-------IRESFTELSRRA 235 (432)
Q Consensus 208 ~~-----~~~~~evSAk---tg~n-------I~elf~~L~~~i 235 (432)
.. .++++.+||. +|.| +.++++.+...+
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 32 2578888876 4555 566666665543
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=99.24 E-value=1.6e-10 Score=119.05 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=98.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCC------CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLES------RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~------~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
...++|+++|..++|||||+++|+... .......-......... | .|++.. .+.+..+..++.|.||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g---~Ti~~~--~~~~~~~~~~i~~iDt 82 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKAR--G---ITINTA--HVEYETEKRHYAHVDC 82 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhc--C---eEEeee--EEEEcCCCeEEEEEEC
Confidence 456899999999999999999984310 00000000000000011 1 123332 2333334456789999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEE-EEEECccCCCCccc---CHHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKV-LVGNRLHLAFNRTV---TTREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiI-LVgNK~DL~~~r~v---~~ee~~~~a~ 207 (432)
||+.+|.......+..+|++++|+|+.+... ....+++..+... ++|.+ ++.||+|+..+.+. ..+++..+..
T Consensus 83 PG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 83 PGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 9998876655566789999999999987533 2223444444443 47876 58999998642221 1123444444
Q ss_pred hc-----CCcEEEEcCCCCCC----------HHHHHHHHHH
Q psy3450 208 KN-----QMAFFEVSPLCDFN----------IRESFTELSR 233 (432)
Q Consensus 208 ~~-----~~~~~evSAktg~n----------I~elf~~L~~ 233 (432)
.. +++++.+||++|.+ +.++++.|..
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 43 36899999998763 4555555554
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.23 E-value=1.8e-10 Score=97.69 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=66.3
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc----
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF---- 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~---- 137 (432)
||+|+|.+|+|||||+|.|+..+... . ....+ .|.......+.+++..+ .|+||||...-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-~----------~~~~~---~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~ 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-V----------SNIPG---TTRDPVYGQFEYNNKKF--ILVDTPGINDGESQD 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-E----------SSSTT---SSSSEEEEEEEETTEEE--EEEESSSCSSSSHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-c----------ccccc---ceeeeeeeeeeeceeeE--EEEeCCCCcccchhh
Confidence 68999999999999999984322111 0 01111 11233334455666554 79999996432
Q ss_pred ------chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEEC
Q psy3450 138 ------CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNR 188 (432)
Q Consensus 138 ------~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK 188 (432)
.... ..+..+|++++|+|.+++.. +....++.+++ .+.|+++|.||
T Consensus 65 ~~~~~~~~~~-~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 65 NDGKEIRKFL-EQISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHH-HHHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHHHHHHHHH-HHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 1122 23388999999999777321 23344555553 46899999998
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.22 E-value=1.3e-10 Score=127.64 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=96.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCc-c--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFP-R--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~-~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+..-+|+|+|..++|||||+++|....... . ...++.......+.......|++.....+.+++ .++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 3445699999999999999999983221111 0 000010111111100011233455555555655 6789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC--
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-- 211 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-- 211 (432)
+.+|......+++.+|++|+|+|+++....+... ++..+.. .++|+++|+||+|+.... ..+....+...++.
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~--~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR--YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA 159 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH--cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence 9988777888899999999999999866555433 3333433 358999999999986422 11222333333332
Q ss_pred --cEEEEcCCCC
Q psy3450 212 --AFFEVSPLCD 221 (432)
Q Consensus 212 --~~~evSAktg 221 (432)
..+.+|+..+
T Consensus 160 ~~~~ipis~~~~ 171 (689)
T TIGR00484 160 VPIQLPIGAEDN 171 (689)
T ss_pred eeEEeccccCCC
Confidence 3567777666
No 258
>PRK09866 hypothetical protein; Provisional
Probab=99.21 E-value=3.6e-10 Score=119.76 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred EEEEEEeCCCCccc-----chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC
Q psy3450 124 VKLQLWDTSGQGRF-----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT 198 (432)
Q Consensus 124 v~l~i~Dt~G~e~~-----~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~ 198 (432)
.++.|+||||...- .......+.++|+||+|+|.++..+..+ ....+.+++.....|+++|.||+|+.+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 46789999998642 2223456899999999999987655443 23444455443336999999999985433323
Q ss_pred HHHHHHHHHh----cC---CcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 199 TREAEMYAIK----NQ---MAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 199 ~ee~~~~a~~----~~---~~~~evSAktg~nI~elf~~L~~ 233 (432)
.+....+.+. .+ ..+|++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4444444321 12 36999999999999999999876
No 259
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.3e-10 Score=117.25 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=102.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECC-eEEEEEEEeCCCCcccchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG-KRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~-~~v~l~i~Dt~G~e~~~~l 140 (432)
=|+++|.-.-||||||..+ ...... ..-.-++ |-......+..+. ..-.+.|.||||++.|..|
T Consensus 7 vVtimGHVDHGKTtLLD~I-R~t~Va---------~~EaGGI-----TQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~m 71 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKI-RKTNVA---------AGEAGGI-----TQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAM 71 (509)
T ss_pred EEEEeCcccCCccchhhhH-hcCccc---------cccCCce-----eeEeeeEEEEeccCCCceEEEEcCCcHHHHHHH
Confidence 4789999999999999997 222221 1111111 0122233444431 2345899999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC---------
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ--------- 210 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~--------- 210 (432)
+..=..-+|++|||+|++|.--- +-.+.+.+.. .++|++++.||+|..+. ..+....-..++|
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~p----QTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMP----QTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred HhcCCccccEEEEEEEccCCcch----hHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCc
Confidence 98888889999999999885221 1223333322 57999999999998642 2222222222222
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..++++||++|.|+++|++.+.-....
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999998766533
No 260
>KOG0462|consensus
Probab=99.17 E-value=1.7e-10 Score=118.84 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=113.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcc-----cccCCCCcCccccCCCccccccceeEEEE-EECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPR-----FWLDGSSESPFCSGSGKYDDMLAYKTTTI-LLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~-----~~~~~~~~~~~~~~ig~~~~tid~~~~~i-~i~~~~v~l~i~Dt 131 (432)
+..-++.||-.-.-|||||..+++.-.-+.. ...-+..+-....+| |+...+..+ +.+|..+.++++||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGI-----TIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGI-----TIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCc-----EEEeeeeEEEEEcCCceEEEeecC
Confidence 4455789999999999999999832111110 000011111111222 223333333 33567899999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC-HHHHHHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT-TREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~-~ee~~~~a~~~~ 210 (432)
||+-+|.......+.-+|++|||+|++..---+.+..++..+. .+.-+|.|.||+|++..+.-. ..+.+++.....
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 9999998888888899999999999987655555555554444 357899999999997543211 122333333334
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+.+.+|||+|.|++++++.+++.+
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhC
Confidence 5899999999999999999999887
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.17 E-value=5.2e-10 Score=122.99 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=83.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCccc--ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRF--WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~--~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+...+|+|+|..++|||||+++|+.. +..... ..++.....+.+.......|++.....+.+++ .++.+|||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 45678999999999999999998321 111000 00000000011110111233455556666655 56799999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
.+|...+...++.+|++|+|+|+.+...-+.. ..+..+.. .++|+|++.||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 88877778888999999999999876543332 33333333 3589999999999853
No 262
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=110.77 Aligned_cols=163 Identities=19% Similarity=0.199 Sum_probs=104.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....++|+++|..|+|||||+|.+|.++..+... .++|...+ .+. ...+++ -.+.+||+||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~----------vg~~t~~~--~~~--~~~~~~--~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK----------VGVGTDIT--TRL--RLSYDG--ENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeee----------cccCCCch--hhH--Hhhccc--cceEEecCCCccc
Confidence 4456899999999999999999997543332111 11110000 000 112344 3479999999765
Q ss_pred -------cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC--------cccC---
Q psy3450 137 -------FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN--------RTVT--- 198 (432)
Q Consensus 137 -------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~--------r~v~--- 198 (432)
++.....++.+.|.++++.|+.|+.---+ .+++..+....-+.+++++.|.+|.... .+.+
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~ 178 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAI 178 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHH
Confidence 56667778899999999999988742222 3445555555455899999999997432 1111
Q ss_pred ----HHHHHHHHHhcC--CcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 199 ----TREAEMYAIKNQ--MAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 199 ----~ee~~~~a~~~~--~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.+.++...+... -|++.++...+.|++++...+++.+-
T Consensus 179 ~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 179 KQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111111111111 37888889999999999999999884
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.16 E-value=3.4e-10 Score=118.23 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=94.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccc-----------cCCCCc----CccccCCCccccccceeEEEEEECC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW-----------LDGSSE----SPFCSGSGKYDDMLAYKTTTILLDG 121 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~-----------~~~~~~----~~~~~~ig~~~~tid~~~~~i~i~~ 121 (432)
...++|+++|..++|||||+.+|+.. +...... -.+.+. ....+..-....|++..... +..
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--Ecc
Confidence 34589999999999999999998331 1111000 000000 00000000011223333333 344
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCC---Ch---hhHHHHHHHHHhhCCCCc-EEEEEECccCCC-
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKW---SF---DGIDRWLKEVEEHAPGVP-KVLVGNRLHLAF- 193 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~---Sf---~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~- 193 (432)
....+.|+||||+++|.......+..+|++|+|+|+++.. .| ....+.+..+... ++| +|++.||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccc
Confidence 4567899999999988766666678999999999998643 11 1222223333332 455 679999999531
Q ss_pred -CcccC----HHHHHHHHHhcC-----CcEEEEcCCCCCCHHH
Q psy3450 194 -NRTVT----TREAEMYAIKNQ-----MAFFEVSPLCDFNIRE 226 (432)
Q Consensus 194 -~r~v~----~ee~~~~a~~~~-----~~~~evSAktg~nI~e 226 (432)
..+-. .+++..+....+ ++++.+||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 223344444333 5799999999999864
No 264
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.13 E-value=2.2e-09 Score=99.70 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=95.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch-
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT- 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~- 139 (432)
++|+++|.+|||||||+|.++....+..... ..+ .|.+.......+++. ++.++||||......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~----------~~~---~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~ 65 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS----------ASS---VTKTCQKESAVWDGR--RVNVIDTPGLFDTSVS 65 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC----------CCC---cccccceeeEEECCe--EEEEEECcCCCCccCC
Confidence 4799999999999999999844443321110 000 111222333344553 579999999654321
Q ss_pred -------hh---hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC---CCcEEEEEECccCCCCccc------CHH
Q psy3450 140 -------II---RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP---GVPKVLVGNRLHLAFNRTV------TTR 200 (432)
Q Consensus 140 -------l~---~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~---~iPiILVgNK~DL~~~r~v------~~e 200 (432)
+. .....+.|++|+|.|+.+ .+-++ ...++.+++... -.++++|.|++|......+ ...
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~ 143 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCE 143 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccH
Confidence 11 112467899999999887 33222 334444444331 2578999999996432211 113
Q ss_pred HHHHHHHhcCCcEEEEc-----CCCCCCHHHHHHHHHHHHhh
Q psy3450 201 EAEMYAIKNQMAFFEVS-----PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 201 e~~~~a~~~~~~~~evS-----Aktg~nI~elf~~L~~~i~~ 237 (432)
..+.+.++.+-.|+..+ +..+.++++|++.+.+.+.+
T Consensus 144 ~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 144 ALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 34555556565555554 45577899999998888754
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.12 E-value=5.1e-10 Score=122.72 Aligned_cols=122 Identities=22% Similarity=0.290 Sum_probs=77.0
Q ss_pred eCcccchhHHHHHhhhcCCCCccc---ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 66 VGDSDVGKQEILSGLYLESRFPRF---WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 66 vG~~gvGKSSLln~L~~~~~~~~~---~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
+|..++|||||+++|......... ...+...............++......+..++ +.+.+|||||+.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999998332221100 00000000000000001122344444555554 6789999999988877778
Q ss_pred hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
.+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~--~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK--YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH--cCCCEEEEEECCCCC
Confidence 889999999999999987666554444 33333 358999999999985
No 266
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.09 E-value=8.5e-10 Score=115.26 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=73.9
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTRE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee 201 (432)
..+.|+|+||++.|....-.-+..+|++++|+|+++...-....+.+..+... .-.++|+|.||+|+.+.... ..++
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~e 195 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEE 195 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHH
Confidence 36799999999988555455567899999999998742111112233322222 22468999999999642211 1223
Q ss_pred HHHHHHh---cCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 202 AEMYAIK---NQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 202 ~~~~a~~---~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+.++.+. .+.+++++||++|.|+++|++.|.+.+
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 3333332 256899999999999999999988654
No 267
>PRK13768 GTPase; Provisional
Probab=99.09 E-value=5.1e-10 Score=108.52 Aligned_cols=109 Identities=16% Similarity=0.098 Sum_probs=72.2
Q ss_pred EEEEEeCCCCccc---chhhhhcc---cC--ceEEEEEEeCCCCCChhhH--HHHHHHHHhhCCCCcEEEEEECccCCCC
Q psy3450 125 KLQLWDTSGQGRF---CTIIRSYS---RG--AQGILLVYDITNKWSFDGI--DRWLKEVEEHAPGVPKVLVGNRLHLAFN 194 (432)
Q Consensus 125 ~l~i~Dt~G~e~~---~~l~~~~~---~~--ad~iIlV~Dvt~~~Sf~~l--~~~l~~i~~~~~~iPiILVgNK~DL~~~ 194 (432)
.+.+||+||+.++ ...+..++ .. ++++++|+|.+......+. ..|+........++|+++|.||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5799999998663 33333332 22 8999999999765544333 3344333322346899999999998653
Q ss_pred cccCHHHHHH----------------------------HHHhcC--CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 195 RTVTTREAEM----------------------------YAIKNQ--MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 195 r~v~~ee~~~----------------------------~a~~~~--~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+. ++... ..++.+ .+++++||+++.|++++.++|.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 221 11111 122333 5889999999999999999998876
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=2.5e-10 Score=104.68 Aligned_cols=113 Identities=24% Similarity=0.354 Sum_probs=67.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEeCCCCcccchh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~Dt~G~e~~~~l 140 (432)
-|+++|+.|+|||+|..+| ..+.+ ..+++.-. .. ....+ +...-.+.++|+||+++.+..
T Consensus 5 ~vlL~Gps~SGKTaLf~~L-~~~~~---------~~T~tS~e--------~n-~~~~~~~~~~~~~~lvD~PGH~rlr~~ 65 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQL-VNGKT---------VPTVTSME--------NN-IAYNVNNSKGKKLRLVDIPGHPRLRSK 65 (181)
T ss_dssp EEEEE-STTSSHHHHHHHH-HHSS------------B---SS--------EE-EECCGSSTCGTCECEEEETT-HCCCHH
T ss_pred eEEEEcCCCCCHHHHHHHH-hcCCc---------CCeecccc--------CC-ceEEeecCCCCEEEEEECCCcHHHHHH
Confidence 5899999999999999998 22222 11111110 00 01111 122335799999999988764
Q ss_pred hhh---cccCceEEEEEEeCCC-CCChhhHHHHHHHHHhh----CCCCcEEEEEECccCCC
Q psy3450 141 IRS---YSRGAQGILLVYDITN-KWSFDGIDRWLKEVEEH----APGVPKVLVGNRLHLAF 193 (432)
Q Consensus 141 ~~~---~~~~ad~iIlV~Dvt~-~~Sf~~l~~~l~~i~~~----~~~iPiILVgNK~DL~~ 193 (432)
... +...+.+||||+|.+. +....++.+++..+... ...+|++|+.||.|+..
T Consensus 66 ~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 66 LLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred HHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 333 4788999999999873 34455555555544321 25689999999999853
No 269
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.06 E-value=1.1e-09 Score=123.20 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=73.2
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC----
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT---- 198 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~---- 198 (432)
+.||||||++.|..+....+..+|++++|+|+++. .+++.+ ..+.. .++|+++|+||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILRQ--YKTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHHH--cCCCEEEEEECCCCccccccccchh
Confidence 79999999999988888888999999999999873 333333 23333 258999999999995322110
Q ss_pred ------------HHHHH----H----HHH------------hc--CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 199 ------------TREAE----M----YAI------------KN--QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 199 ------------~ee~~----~----~a~------------~~--~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++.. + +++ ++ .++++++||++|.||++++..|....
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 01110 0 111 11 25899999999999999998876543
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.04 E-value=5.5e-10 Score=94.83 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=91.8
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
|+++||..|+|||||.+.+..+.... -++.-++++++ -.+||||.---...+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly------------------------kKTQAve~~d~----~~IDTPGEy~~~~~~ 54 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY------------------------KKTQAVEFNDK----GDIDTPGEYFEHPRW 54 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh------------------------cccceeeccCc----cccCCchhhhhhhHH
Confidence 78999999999999999982222111 11122223332 246999853222222
Q ss_pred ----hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-cEEEE
Q psy3450 142 ----RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-AFFEV 216 (432)
Q Consensus 142 ----~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~~~ev 216 (432)
-....++|++++|-.+++++|--. ..+.... ..|+|-|.+|.||.+.. ..+..++|..+-|. ++|++
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~~-~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPESRFP-----PGFLDIG-VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFET 126 (148)
T ss_pred HHHHHHHhhccceeeeeecccCccccCC-----ccccccc-ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEE
Confidence 234589999999999999875221 1122222 24699999999997533 33456677777787 89999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRR 234 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~ 234 (432)
|+.++.|++++++.|...
T Consensus 127 s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 127 SAVDNQGVEELVDYLASL 144 (148)
T ss_pred eccCcccHHHHHHHHHhh
Confidence 999999999999998753
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=1.7e-09 Score=110.00 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=108.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcC-CC-----CcccccCCCCcCccccCCCccccccceeEEEEEE---CCeEEEEEEEeC
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLE-SR-----FPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWDT 131 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~-~~-----~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~Dt 131 (432)
-++.++-.-.-|||||..|++-. +. +....++ ..+-....++ |+......+.+ +|+.+.|+++||
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LD-sMdiERERGI-----TIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLD-SMDIERERGI-----TIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhh-hhhhHhhcCc-----eEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 35677777788999999998221 01 1000011 0111111122 12333333322 568899999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHH-HHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREA-EMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~-~~~a~~~~ 210 (432)
||+-.|..-....+..|.+.|||+|++..-.-+.+...+..+.+ +.-+|-|.||+||+.. ..+.. .+.-.-.|
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~A---dpervk~eIe~~iG 157 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAA---DPERVKQEIEDIIG 157 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCC---CHHHHHHHHHHHhC
Confidence 99998877777778899999999999977555556666655554 4789999999999642 22222 23333345
Q ss_pred C---cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 M---AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 ~---~~~evSAktg~nI~elf~~L~~~i 235 (432)
+ ..+.+|||+|.||+++++.+++.+
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhC
Confidence 4 578999999999999999999887
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.01 E-value=3.9e-09 Score=116.08 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=93.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcc--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPR--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+...+|+|+|.+++|||||+++|+. .+.... ...++.....+.+.......|++.....+.+++ .++.++||||.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4567999999999999999999832 111100 000000000000000011123455455555655 56799999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC---
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM--- 211 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~--- 211 (432)
.+|.......++.+|++|+|+|+.....-+...-| ..+... ++|+|++.||+|+.... ..+....+.+.++.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~--~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY--KVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc--CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCee
Confidence 88766566677899999999998876544443333 333333 47999999999986432 12222333334432
Q ss_pred -cEEEEcCCCC
Q psy3450 212 -AFFEVSPLCD 221 (432)
Q Consensus 212 -~~~evSAktg 221 (432)
..+.+||..+
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 4567787766
No 273
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.00 E-value=1.7e-09 Score=101.12 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
....++++.|..--.... .. -+|.+|.|+|+.+.++.. ..+..++. ..=++|+||+|+.+......+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~--~~~~~qi~-----~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIP--RKGGPGIT-----RSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhh--hhhHhHhh-----hccEEEEEhhhccccccccHHHHH
Confidence 456788888842211221 11 268899999998765422 11122221 122899999999642222334444
Q ss_pred HHHHh--cCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 204 MYAIK--NQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 204 ~~a~~--~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+.++. .+.+++++||++|.|++++|+++.+.++
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44444 3579999999999999999999987654
No 274
>KOG1145|consensus
Probab=98.98 E-value=1.3e-08 Score=105.22 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=102.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.=|.|+|.-.-||||||..| .+.........+ .+..+| -+...+. +|+ .+.|.||||+..|..|
T Consensus 154 PVVTiMGHVDHGKTTLLD~l-Rks~VAA~E~GG-----ITQhIG-------AF~V~~p-~G~--~iTFLDTPGHaAF~aM 217 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDAL-RKSSVAAGEAGG-----ITQHIG-------AFTVTLP-SGK--SITFLDTPGHAAFSAM 217 (683)
T ss_pred CeEEEeecccCChhhHHHHH-hhCceehhhcCC-----ccceec-------eEEEecC-CCC--EEEEecCCcHHHHHHH
Confidence 45889999999999999997 333322111111 112223 2222333 453 4699999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHH-HHH------HhcC--
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAE-MYA------IKNQ-- 210 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~-~~a------~~~~-- 210 (432)
+..-.+-+|+++||+.+.|.-- .+-.+.|+... .++|+||..||+|.+. -..+... ++. +++|
T Consensus 218 RaRGA~vtDIvVLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred HhccCccccEEEEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCc
Confidence 9988889999999999887532 22233344333 5799999999999753 2233332 222 2233
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+.+++||++|.|++.|-+.+.-+.
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHHH
Confidence 5799999999999999988877554
No 275
>KOG1490|consensus
Probab=98.98 E-value=3.2e-10 Score=115.76 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=126.9
Q ss_pred ccceeeEEEEecCCCcccceechhhhHHHHHhhhcCcc-ccccccccceEEEEEeCcccchhHHHHHhhhcCCCCccccc
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPV-VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWL 91 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~-~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~ 91 (432)
.|.++++..++..+.|+-+.+.+....-++.+.+.++- .+...-....-.++|+|-||||||||+|.+.....-.
T Consensus 120 ~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvev---- 195 (620)
T KOG1490|consen 120 GDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEV---- 195 (620)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccccc----
Confidence 34555555555566666555544443333333333222 1222223345578999999999999998761111100
Q ss_pred CCCCcCccccCCCccccccceeEEEEEE---CCeEEEEEEEeCCCCccc----chhhhh-----cccCceEEEEEEeCCC
Q psy3450 92 DGSSESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWDTSGQGRF----CTIIRS-----YSRGAQGILLVYDITN 159 (432)
Q Consensus 92 ~~~~~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~Dt~G~e~~----~~l~~~-----~~~~ad~iIlV~Dvt~ 159 (432)
.+| .|.++.+.+ +-+-..+++.||||.-+. +..+.. ...--.+|+++.|++.
T Consensus 196 -----qpY-----------aFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe 259 (620)
T KOG1490|consen 196 -----QPY-----------AFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE 259 (620)
T ss_pred -----CCc-----------ccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh
Confidence 010 222233322 334456788899996321 111111 1122357899999987
Q ss_pred CC--ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHH---HHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 160 KW--SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREA---EMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 160 ~~--Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~---~~~a~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.. |..+.-+++..|+....+.|+|+|.||+|+.....++.+.. +.+....+++++++|+.+.+||-++....++.
T Consensus 260 ~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 260 MCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred hhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHH
Confidence 54 55566778888888888899999999999976555555442 33444456899999999999999999888888
Q ss_pred Hhhh
Q psy3450 235 ALQR 238 (432)
Q Consensus 235 i~~~ 238 (432)
++..
T Consensus 340 LLa~ 343 (620)
T KOG1490|consen 340 LLAA 343 (620)
T ss_pred HHHH
Confidence 7654
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.8e-09 Score=106.41 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=96.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcc--------------------cccCCCCcCccccCCCccccccceeEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPR--------------------FWLDGSSESPFCSGSGKYDDMLAYKTTT 116 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~--------------------~~~~~~~~~~~~~~ig~~~~tid~~~~~ 116 (432)
.+.++++++|...+|||||+-+|+- .+.++. .|.-....... .+.+.+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeER-------erGvTi~~~~ 77 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEER-------ERGVTIDVAH 77 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHH-------hcceEEEEEE
Confidence 3458999999999999999999822 122211 11111111111 1112333333
Q ss_pred EEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCC---Ch--hhH-HHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKW---SF--DGI-DRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 117 i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~---Sf--~~l-~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
..+.-..+.+.|+|+||+..|-.-.-.-...||+.|||+|+.+.+ .| +.. ++-+- +.....---+|++.||+|
T Consensus 78 ~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi~~lIVavNKMD 156 (428)
T COG5256 78 SKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGIKQLIVAVNKMD 156 (428)
T ss_pred EEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCCceEEEEEEccc
Confidence 444455678999999998777544444457799999999998764 11 111 22111 222212235789999999
Q ss_pred CCCCcccCHHHH----HHHHHhcC-----CcEEEEcCCCCCCHHHH
Q psy3450 191 LAFNRTVTTREA----EMYAIKNQ-----MAFFEVSPLCDFNIRES 227 (432)
Q Consensus 191 L~~~r~v~~ee~----~~~a~~~~-----~~~~evSAktg~nI~el 227 (432)
+.+-++-..+++ ..+.+..| ++|++|||..|.|+.+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 975333333333 23444444 56999999999998654
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.97 E-value=1.6e-09 Score=119.61 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=80.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc-CccccCCCcccccccee--EEEEEECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYK--TTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~--~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+...+|+++|..++|||||+++|+...........+... ..+.+.......|++.. ...+..++..+++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999984321110000000000 00000000001112221 222335667789999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
.+|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhcc
Confidence 9988777888999999999999987543333233322 222 347889999999984
No 278
>KOG3905|consensus
Probab=98.97 E-value=9.6e-09 Score=100.18 Aligned_cols=159 Identities=18% Similarity=0.309 Sum_probs=108.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEE--ECCeEEEEEEEeCCCCcccc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL--LDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~--i~~~~v~l~i~Dt~G~e~~~ 138 (432)
-.|+|+|+.++||||||.+| .+..+.....+. .|..-.+. ..+...++.+|-.-|.--..
T Consensus 53 k~VlvlGdn~sGKtsLi~kl-----------qg~e~~KkgsgL-------eY~yl~V~de~RDd~tr~~VWiLDGd~~h~ 114 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKL-----------QGSETVKKGSGL-------EYLYLHVHDEDRDDLTRCNVWILDGDLYHK 114 (473)
T ss_pred CeEEEEccCCCchhHHHHHh-----------hcccccCCCCCc-------ceEEEecccccchhhhhcceEEecCchhhh
Confidence 37999999999999999997 222222222233 33322222 22345678889887865555
Q ss_pred hhhhhcccC----ceEEEEEEeCCCCCCh-hhHHHHHHHHHh--------------------------------------
Q psy3450 139 TIIRSYSRG----AQGILLVYDITNKWSF-DGIDRWLKEVEE-------------------------------------- 175 (432)
Q Consensus 139 ~l~~~~~~~----ad~iIlV~Dvt~~~Sf-~~l~~~l~~i~~-------------------------------------- 175 (432)
.+....+.. --.+||+.|+++++.+ +.+++|..-+++
T Consensus 115 ~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~ 194 (473)
T KOG3905|consen 115 GLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQ 194 (473)
T ss_pred hHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 555444322 2478999999999764 556888776654
Q ss_pred ------------------------hCCCCcEEEEEECccC----CCCcccC-------HHHHHHHHHhcCCcEEEEcCCC
Q psy3450 176 ------------------------HAPGVPKVLVGNRLHL----AFNRTVT-------TREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 176 ------------------------~~~~iPiILVgNK~DL----~~~r~v~-------~ee~~~~a~~~~~~~~evSAkt 220 (432)
.+-++|++||.+|+|. +.+.+.. ...+++||-.+|...|.+|+|.
T Consensus 195 ~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE 274 (473)
T KOG3905|consen 195 RRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKE 274 (473)
T ss_pred cccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccc
Confidence 0114799999999998 2222211 2245678888999999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy3450 221 DFNIRESFTELSRRALQ 237 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~ 237 (432)
..||+-+..+|+..++-
T Consensus 275 ~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 275 TKNIDLLYKYIVHRSYG 291 (473)
T ss_pred ccchHHHHHHHHHHhcC
Confidence 99999999999988854
No 279
>KOG0090|consensus
Probab=98.95 E-value=3.3e-09 Score=98.06 Aligned_cols=152 Identities=21% Similarity=0.309 Sum_probs=95.7
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
.|+++|..++|||+|.-+| ..+.....+.. +.-..-...++... ..++|.||+.+.+.-.
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL----------~~gs~~~TvtS--------iepn~a~~r~gs~~--~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQL----------ITGSHRGTVTS--------IEPNEATYRLGSEN--VTLVDLPGHSRLRRKL 99 (238)
T ss_pred cEEEEecCCCCceeeeeeh----------hcCCccCeeee--------eccceeeEeecCcc--eEEEeCCCcHHHHHHH
Confidence 6899999999999999998 33322221111 11112222233333 6899999999877766
Q ss_pred hhccc---CceEEEEEEeCCC-CCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCc------ccCHHHHHH---
Q psy3450 142 RSYSR---GAQGILLVYDITN-KWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNR------TVTTREAEM--- 204 (432)
Q Consensus 142 ~~~~~---~ad~iIlV~Dvt~-~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r------~v~~ee~~~--- 204 (432)
..++. .+-+++||+|..- .....++.+++..+.-.. ..+|++|+.||.|+.-.+ +..+.|+..
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~ 179 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRE 179 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 66665 7999999999753 334555655555544322 568999999999983210 001111111
Q ss_pred ---------------------------HHH--hcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 205 ---------------------------YAI--KNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 205 ---------------------------~a~--~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
|.. ...+.|.|+|++++ +++++-+|+.+.
T Consensus 180 sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 180 SRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 110 12246889999999 899999998764
No 280
>KOG1707|consensus
Probab=98.94 E-value=1.5e-08 Score=105.47 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=115.2
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+.....+++.++|+.++|||.|++.| .+..+.... +... ...+....+.+.|..-.+.+-|.+-
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sf-lgr~~~~~~---------~~~~-----~~~~avn~v~~~g~~k~LiL~ei~~ 483 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSF-LGRSMSDNN---------TGTT-----KPRYAVNSVEVKGQQKYLILREIGE 483 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHH-hcccccccc---------ccCC-----CCceeeeeeeeccccceEEEeecCc
Confidence 344456789999999999999999996 555443311 1111 1234445555557666677877765
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-c
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-A 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~ 212 (432)
. ....+...- ..+|++.++||.+++.+|+.+...++..... .+.|+++|+.|+|+.+..+...-+-.++++++++ +
T Consensus 484 ~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~ 560 (625)
T KOG1707|consen 484 D-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP 560 (625)
T ss_pred c-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence 4 222222222 6799999999999999999887666654444 6799999999999976443332233788999998 5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
-+.+|.++... .++|..|+.++....
T Consensus 561 P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 561 PIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 66778875334 899999999885543
No 281
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.90 E-value=1.4e-08 Score=95.25 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=62.7
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
..+.|++|.|.-... ..+....+..+.|+|+.+.+.. +.... .+ ...|.++|+||+|+........++..
T Consensus 103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~-~~----~~~a~iiv~NK~Dl~~~~~~~~~~~~ 172 (207)
T TIGR00073 103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYP-GM----FKEADLIVINKADLAEAVGFDVEKMK 172 (207)
T ss_pred CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhH-hH----HhhCCEEEEEHHHccccchhhHHHHH
Confidence 456788888821100 1122234556678888765421 11111 11 12578999999999653333334444
Q ss_pred HHHHhcC--CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 204 MYAIKNQ--MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 204 ~~a~~~~--~~~~evSAktg~nI~elf~~L~~~ 234 (432)
+..++.+ .+++++||++|.|++++|+++.+.
T Consensus 173 ~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 173 ADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4454443 799999999999999999999875
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.89 E-value=2.3e-08 Score=98.82 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=93.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...++|+++|.+||||||++|+++....+... .+. ..+ ..........++ .++.+|||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs----~f~-----s~t-----~~~~~~~~~~~G--~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS----AFQ-----SEG-----LRPMMVSRTRAG--FTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc----CCC-----Ccc-----eeEEEEEEEECC--eEEEEEECCCCCch
Confidence 46789999999999999999998433322110 000 000 011111222344 56899999998654
Q ss_pred chhh-------hhcc--cCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCC---CCcEEEEEECccCCCCcccCHHHH--
Q psy3450 138 CTII-------RSYS--RGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAP---GVPKVLVGNRLHLAFNRTVTTREA-- 202 (432)
Q Consensus 138 ~~l~-------~~~~--~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~---~iPiILVgNK~DL~~~r~v~~ee~-- 202 (432)
.... ..++ ...|++|+|.+++.. .+.+. ...++.+..... -.++|||.++.|.......+.++.
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~ 178 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS 178 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH
Confidence 2221 1222 268999999665532 23322 344555554431 257899999999754333443321
Q ss_pred ------HHHHHh-------------cCCcEEEEcCCCCCC-------------HHHHHHHHHHHHhhhcC
Q psy3450 203 ------EMYAIK-------------NQMAFFEVSPLCDFN-------------IRESFTELSRRALQRNG 240 (432)
Q Consensus 203 ------~~~a~~-------------~~~~~~evSAktg~n-------------I~elf~~L~~~i~~~~~ 240 (432)
+++.++ +....+|-|.....| +..+++.|.+.+....+
T Consensus 179 ~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~ 248 (313)
T TIGR00991 179 KRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSK 248 (313)
T ss_pred hcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCC
Confidence 111111 011356666554332 67888888888866443
No 283
>PTZ00258 GTP-binding protein; Provisional
Probab=98.86 E-value=2.9e-08 Score=101.48 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=52.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe---------------
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK--------------- 122 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~--------------- 122 (432)
...++|.+||.||||||||+|++.........+ ..+|++.....+.+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~---------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~ 83 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF---------------PFCTIDPNTARVNVPDERFDWLCKHFKPKSIV 83 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCC---------------CCCcccceEEEEecccchhhHHHHHcCCcccC
Confidence 445799999999999999999982221111110 11222333333333322
Q ss_pred EEEEEEEeCCCCccc----chhhhh---cccCceEEEEEEeCC
Q psy3450 123 RVKLQLWDTSGQGRF----CTIIRS---YSRGAQGILLVYDIT 158 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~----~~l~~~---~~~~ad~iIlV~Dvt 158 (432)
..+++++||||...- ..+.+. .++++|++++|+|..
T Consensus 84 ~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 84 PAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 235899999996432 123233 357899999999974
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.83 E-value=5.5e-08 Score=94.06 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=71.1
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+..+..++|+|+|.+|||||||+|+++....+... .+. + .|..........++ ..+.+|||||.
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~----~~~----~------~T~~~~~~~~~~~g--~~i~vIDTPGl 89 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATS----AFQ----S------ETLRVREVSGTVDG--FKLNIIDTPGL 89 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC----CCC----C------ceEEEEEEEEEECC--eEEEEEECCCc
Confidence 44567799999999999999999998443322211 000 0 11122222233445 56799999997
Q ss_pred cccc--h-h-------hhhccc--CceEEEEEEeCCCCCChhhH-HHHHHHHHhhCC---CCcEEEEEECccCCC
Q psy3450 135 GRFC--T-I-------IRSYSR--GAQGILLVYDITNKWSFDGI-DRWLKEVEEHAP---GVPKVLVGNRLHLAF 193 (432)
Q Consensus 135 e~~~--~-l-------~~~~~~--~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~---~iPiILVgNK~DL~~ 193 (432)
.... . . ...|+. ..|++++|..++... ++.. ...++.+.+... -.++++|.||+|...
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 6442 1 1 122332 578888887665432 2222 344455554332 147999999999753
No 285
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.82 E-value=5.1e-08 Score=101.93 Aligned_cols=160 Identities=16% Similarity=0.311 Sum_probs=108.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE--CCeEEEEEEEeCCCCcccc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL--DGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i--~~~~v~l~i~Dt~G~e~~~ 138 (432)
-.|+|+|+.++||||||.+| .+ . .+. ..+.| ++|..-.+.- .+...++.+|-..|...+.
T Consensus 26 k~vlvlG~~~~GKttli~~L-~~---------~-e~~--~~~~a-----LeYty~~v~d~~~dd~~rl~vw~L~g~~~~~ 87 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARL-QG---------I-EDP--KKGLA-----LEYTYLDVKDEDRDDLARLNVWELDGDPSHS 87 (472)
T ss_pred ceEEEEeCCCCchHHHHHHh-hc---------c-CCC--CCCcc-----cceEEEeeccCcCCcCceeeEEEcCCCcchH
Confidence 47999999999999999997 21 1 111 12222 2443322222 2234678999998876777
Q ss_pred hhhhhcccC----ceEEEEEEeCCCCCChh-hHHHHHHHHHh--------------------------------h-----
Q psy3450 139 TIIRSYSRG----AQGILLVYDITNKWSFD-GIDRWLKEVEE--------------------------------H----- 176 (432)
Q Consensus 139 ~l~~~~~~~----ad~iIlV~Dvt~~~Sf~-~l~~~l~~i~~--------------------------------~----- 176 (432)
.+....+.. --++|||.|.+.|+.+- .+.+|+..+++ .
T Consensus 88 ~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~ 167 (472)
T PF05783_consen 88 DLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSP 167 (472)
T ss_pred hHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCc
Confidence 776655532 25788999999998754 55777665544 0
Q ss_pred --------------------------CCCCcEEEEEECccCCC----Ccc-------cCHHHHHHHHHhcCCcEEEEcCC
Q psy3450 177 --------------------------APGVPKVLVGNRLHLAF----NRT-------VTTREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 177 --------------------------~~~iPiILVgNK~DL~~----~r~-------v~~ee~~~~a~~~~~~~~evSAk 219 (432)
+-++|++||.+|+|... +.. .-.+.++.+|-++|+..|.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~ 247 (472)
T PF05783_consen 168 NRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVK 247 (472)
T ss_pred ccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 00379999999999632 111 11233567778899999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q psy3450 220 CDFNIRESFTELSRRALQR 238 (432)
Q Consensus 220 tg~nI~elf~~L~~~i~~~ 238 (432)
...|++-++.+|...++..
T Consensus 248 ~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 248 EEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred ccccHHHHHHHHHHHhccC
Confidence 9999999999988887653
No 286
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.82 E-value=1.9e-08 Score=92.84 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH-----HhcCC
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKNQM 211 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~~~ 211 (432)
+..++..+++++|++|+|+|++++.. .|...+.....+.|+++|+||+|+..+ ....+....+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCC
Confidence 57788889999999999999987642 123333223356899999999999643 23334444443 23332
Q ss_pred ---cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 212 ---AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 212 ---~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.++++||++|.|++++++.|.+.+.
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988763
No 287
>KOG1532|consensus
Probab=98.80 E-value=2e-08 Score=96.12 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=98.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcC---CC---CcccccCCCCcCccccCCCccccccceeEEE--E-----------
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLE---SR---FPRFWLDGSSESPFCSGSGKYDDMLAYKTTT--I----------- 117 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~---~~---~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~--i----------- 117 (432)
.+.+.-|+++|-.|+|||||++||... .. +..+ +++......-+..=+.+++++|+... .
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviN-LDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVIN-LDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEe-CCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 345667899999999999999998221 11 1111 22222221111111345555554210 0
Q ss_pred ---------------EECCeEEEEEEEeCCCCcc-cchhhh-----hcc--cCceEEEEEEeCCC---CCChhhHHHHHH
Q psy3450 118 ---------------LLDGKRVKLQLWDTSGQGR-FCTIIR-----SYS--RGAQGILLVYDITN---KWSFDGIDRWLK 171 (432)
Q Consensus 118 ---------------~i~~~~v~l~i~Dt~G~e~-~~~l~~-----~~~--~~ad~iIlV~Dvt~---~~Sf~~l~~~l~ 171 (432)
.-........++|||||-+ |.+-.. ..+ ..--++++|+|... +..|- ...+.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHH
Confidence 0012346689999999853 332111 111 22356777777643 33332 22222
Q ss_pred HHHh-hCCCCcEEEEEECccCCCCc-----ccCHHHHHHHHHh---------------------cCCcEEEEcCCCCCCH
Q psy3450 172 EVEE-HAPGVPKVLVGNRLHLAFNR-----TVTTREAEMYAIK---------------------NQMAFFEVSPLCDFNI 224 (432)
Q Consensus 172 ~i~~-~~~~iPiILVgNK~DL~~~r-----~v~~ee~~~~a~~---------------------~~~~~~evSAktg~nI 224 (432)
...- +..++|.|+|.||.|+.+.. .-..+..++-.++ .++..+-|||.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 2222 22569999999999996521 1111111111110 1356889999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy3450 225 RESFTELSRRALQR 238 (432)
Q Consensus 225 ~elf~~L~~~i~~~ 238 (432)
+++|..+-..+-+.
T Consensus 253 ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 253 DDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877554
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.79 E-value=4.5e-08 Score=108.40 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=79.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc-CccccCCCccccccceeEEEE--EECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYKTTTI--LLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~~~~i--~i~~~~v~l~i~Dt~G~ 134 (432)
+..-+|+++|..++|||||+.+++...........+... ..+.+.......|++.....+ ..++...++.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 445689999999999999999984322211100111000 000000000001122222222 23555788999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
.+|.......++.+|++|+|+|+.....-+....|.. +... ++|.|++.||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc--CCCeEEEEECchhh
Confidence 9988777888899999999999887644333333433 2222 46889999999974
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.79 E-value=6.8e-08 Score=92.02 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=80.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
.....|+++|.+|+|||||++.+... + .........| .+ .+ ......++.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~--~--------~~~~~~~~~g------~i---~i-~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN--Y--------TKQNISDIKG------PI---TV-VTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh--c--------ccCccccccc------cE---EE-EecCCceEEEEeCCchH--
Confidence 44578999999999999999987221 0 0000111112 01 11 11234567899999853
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEECccCCCCccc---CHHHHHH-HHHh--cC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGNRLHLAFNRTV---TTREAEM-YAIK--NQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgNK~DL~~~r~v---~~ee~~~-~a~~--~~ 210 (432)
..+. ...+.+|++++|+|.+....... ..++..+... +.|. ++|.||+|+..+... ..++++. +..+ .+
T Consensus 95 ~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (225)
T cd01882 95 NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQG 170 (225)
T ss_pred HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence 2222 34588999999999886543332 2334444333 3674 559999998642211 1122222 2222 23
Q ss_pred CcEEEEcCCCCCC
Q psy3450 211 MAFFEVSPLCDFN 223 (432)
Q Consensus 211 ~~~~evSAktg~n 223 (432)
.+++.+||++...
T Consensus 171 ~ki~~iSa~~~~~ 183 (225)
T cd01882 171 AKLFYLSGIVHGR 183 (225)
T ss_pred CcEEEEeeccCCC
Confidence 6899999998854
No 290
>KOG0705|consensus
Probab=98.76 E-value=2.5e-08 Score=102.83 Aligned_cols=160 Identities=20% Similarity=0.399 Sum_probs=121.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
+.+|+-|||..++|||+|+.++ +.+.+.....+.-| .| .+.+.+++....+.+.|.+|..
T Consensus 29 pelk~givg~~~sgktalvhr~----------ltgty~~~e~~e~~------~~-kkE~vv~gqs~lLlirdeg~~~--- 88 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRY----------LTGTYTQDESPEGG------RF-KKEVVVDGQSHLLLIRDEGGHP--- 88 (749)
T ss_pred chhheeeeecccCCceeeeeee----------ccceeccccCCcCc------cc-eeeEEeeccceEeeeecccCCc---
Confidence 4589999999999999999997 55555544444443 44 4556677888888999988832
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCC--CCcccCHHHHHHHHHhc-CCcE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLA--FNRTVTTREAEMYAIKN-QMAF 213 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~--~~r~v~~ee~~~~a~~~-~~~~ 213 (432)
-.+|...+|++||||.+.+..+|+.+..+...+..+. ..+|+++|+++.-.. ..+.+...++..++.++ .+.|
T Consensus 89 --~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy 166 (749)
T KOG0705|consen 89 --DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSY 166 (749)
T ss_pred --hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccce
Confidence 2467788999999999999999999887766665433 578999999886543 23555556666555544 5799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
|+.+|.+|.|++..|+.++..+....+
T Consensus 167 ~et~atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred eecchhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988766543
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.73 E-value=3.7e-08 Score=110.52 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=81.1
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc-CccccCCCccccccceeEEEEEE--------------CC
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYKTTTILL--------------DG 121 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~~~~i~i--------------~~ 121 (432)
.+...+|+|+|..++|||||+.+|+...........+... ..+.+.......+++.....+.+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4456699999999999999999984433221111111100 00000000000112221222222 22
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
..+.++++||||+.+|.......++.+|++|+|+|+.+.-......-|.. +.. .++|+|++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH--CCCCEEEEEECCccc
Confidence 35778999999999997777777899999999999987654443333433 333 358999999999985
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.72 E-value=1.9e-07 Score=94.89 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=98.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccc----cCCCCcCccccCCCccccccceeE---EEEEE---CCeEEEEEE
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFW----LDGSSESPFCSGSGKYDDMLAYKT---TTILL---DGKRVKLQL 128 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~----~~~~~~~~~~~~ig~~~~tid~~~---~~i~i---~~~~v~l~i 128 (432)
-.+-|.|+|+.++|||||+|+|...-..|... .....+.....+.|.+-+|.+... +.+.+ ++-...+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 35789999999999999999983331111111 001111123344453333333322 22222 455678899
Q ss_pred EeCCCCcc--------cch--h-------------------hhhccc-CceEEEEEE-eCC----CCCChhhH-HHHHHH
Q psy3450 129 WDTSGQGR--------FCT--I-------------------IRSYSR-GAQGILLVY-DIT----NKWSFDGI-DRWLKE 172 (432)
Q Consensus 129 ~Dt~G~e~--------~~~--l-------------------~~~~~~-~ad~iIlV~-Dvt----~~~Sf~~l-~~~l~~ 172 (432)
+||+|-.. -.. + .+..+. .+|+.|+|. |.+ .++.+.+. .+|+.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999421 111 0 122334 789999998 764 12334444 778888
Q ss_pred HHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCC--CCHHHHHHHH
Q psy3450 173 VEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCD--FNIRESFTEL 231 (432)
Q Consensus 173 i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg--~nI~elf~~L 231 (432)
+++. ++|+++|.||.|-..+ ...+...++.++++.+++.+|+..- ..|..+++.+
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 8876 4899999999993211 1334445666778889888887533 3444444444
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=98.71 E-value=5e-08 Score=109.36 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=79.9
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc-CccccCCCccccccceeEEEEEEC--------CeEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYKTTTILLD--------GKRVKLQL 128 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~~~~i~i~--------~~~v~l~i 128 (432)
+...+|+++|..++|||||+++|+...........+... ..+.+..-....+++.....+.++ ++...+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445699999999999999999984422211100111100 000000000011122222223332 23577899
Q ss_pred EeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 129 WDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 129 ~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
+||||..+|.......++.+|++|+|+|+.+.-.-+.. ..+..+... ++|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc--CCCEEEEEEChhhh
Confidence 99999998877777788999999999999876443332 333344333 47999999999985
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.5e-07 Score=93.10 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=95.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCc-ccccCCC-CcCccccCCCcc----------------ccccceeEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFP-RFWLDGS-SESPFCSGSGKY----------------DDMLAYKTTTILL 119 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~-~~~~~~~-~~~~~~~~ig~~----------------~~tid~~~~~i~i 119 (432)
...++++-+|...=||||||-||+-..+.. +..+..- ..+...-+.|.. ..|||...+. +
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy--F 81 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY--F 81 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--c
Confidence 356899999999999999999983322211 0000000 000000001100 1123333332 3
Q ss_pred CCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH
Q psy3450 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT 199 (432)
Q Consensus 120 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ 199 (432)
.-.+-++.+-||||++.|..-...=...||+.|+++|+... ..+..+-...|...-.=..++|..||+||.+-.+-..
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence 33445689999999999865444455779999999998432 2222221122222222245789999999976444333
Q ss_pred H----HHHHHHHhcCC---cEEEEcCCCCCCHH
Q psy3450 200 R----EAEMYAIKNQM---AFFEVSPLCDFNIR 225 (432)
Q Consensus 200 e----e~~~~a~~~~~---~~~evSAktg~nI~ 225 (432)
+ +...|+.+++. .++++||..|.||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3 34567888774 79999999999974
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.69 E-value=4.2e-07 Score=85.76 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=91.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc--
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC-- 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~-- 138 (432)
++|+|+|..|+||||++|.++....|....... ..+ -........+++.. +.++||||..+-.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~------~~t-------~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAK------SVT-------QECQKYSGEVDGRQ--VTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTS------S---------SS-EEEEEEETTEE--EEEEE--SSEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccC------Ccc-------cccceeeeeecceE--EEEEeCCCCCCCccc
Confidence 589999999999999999985555553211000 001 13334444677744 6899999953211
Q ss_pred ------hhhh---hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC---CCcEEEEEECccCCCCccc----C---H
Q psy3450 139 ------TIIR---SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP---GVPKVLVGNRLHLAFNRTV----T---T 199 (432)
Q Consensus 139 ------~l~~---~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~---~iPiILVgNK~DL~~~r~v----~---~ 199 (432)
.+.. ....+.+++|||+.+. +-+-.+ ...++.+.+... -.-++||.+..|......+ . .
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~ 143 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESN 143 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCc
Confidence 1111 1245789999999988 333222 233333433321 1357888888886443321 1 1
Q ss_pred HHHHHHHHhcCCcEEEEcCC------CCCCHHHHHHHHHHHHhhh
Q psy3450 200 REAEMYAIKNQMAFFEVSPL------CDFNIRESFTELSRRALQR 238 (432)
Q Consensus 200 ee~~~~a~~~~~~~~evSAk------tg~nI~elf~~L~~~i~~~ 238 (432)
+....+.++.+-.|...+.+ ....+.+|++.+-+.+.++
T Consensus 144 ~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 144 EALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 22455666777788887766 2345788888877776554
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.69 E-value=3.2e-07 Score=92.89 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=50.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeE---------------EE
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR---------------VK 125 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~---------------v~ 125 (432)
++|.+||.||||||||+|++.........+ ..+|++.....+.+.+.. .+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny---------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY---------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc---------------ccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 689999999999999999983322111110 112223333333333321 35
Q ss_pred EEEEeCCCCccc----chhhhh---cccCceEEEEEEeCC
Q psy3450 126 LQLWDTSGQGRF----CTIIRS---YSRGAQGILLVYDIT 158 (432)
Q Consensus 126 l~i~Dt~G~e~~----~~l~~~---~~~~ad~iIlV~Dvt 158 (432)
+++.|+||...- ..+.+. .++++|++++|+|+.
T Consensus 68 i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 68 IEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 899999996432 223233 357899999999984
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.69 E-value=1.6e-08 Score=97.09 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=57.4
Q ss_pred EEEEEeCCCCcccchhhhhc------c--cCceEEEEEEeCCCCCChhh-HHHHHHHHH-hhCCCCcEEEEEECccCCCC
Q psy3450 125 KLQLWDTSGQGRFCTIIRSY------S--RGAQGILLVYDITNKWSFDG-IDRWLKEVE-EHAPGVPKVLVGNRLHLAFN 194 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l~~~~------~--~~ad~iIlV~Dvt~~~Sf~~-l~~~l~~i~-~~~~~iPiILVgNK~DL~~~ 194 (432)
.+.++|||||.++...+... + ...-++++++|.....+-.. +..++..+. ...-+.|.|.|.||+|+..+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 67999999998765544432 2 34557888899765443221 222222222 11135899999999999652
Q ss_pred cc-------cC------------HHHHHHHHH---hcC-C-cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 195 RT-------VT------------TREAEMYAI---KNQ-M-AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 195 r~-------v~------------~ee~~~~a~---~~~-~-~~~evSAktg~nI~elf~~L~~~i 235 (432)
.. .. ..-.+++++ .++ . .++.+|++++.++++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 00 000112222 123 3 799999999999999999887654
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.68 E-value=1.1e-07 Score=95.54 Aligned_cols=104 Identities=17% Similarity=0.071 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHH
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTR 200 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~e 200 (432)
.+.+.|+||+|...-.. .....+|.+++|.+.. +-++++.....+.+ +.-++|.||+|+...... ...
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~---~gd~iq~~k~gi~E----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPG---AGDELQGIKKGIME----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCC---chHHHHHHHhhhhh----hhheEEeehhcccchhHHHHHHH
Confidence 36689999999753222 2456799999996633 33344322222222 234899999998643211 112
Q ss_pred HHHHHHHh-------cCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 201 EAEMYAIK-------NQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 201 e~~~~a~~-------~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+....... +..+++.+||+++.||+++++.+.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 2258999999999999999999998773
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.67 E-value=2.8e-07 Score=93.96 Aligned_cols=170 Identities=14% Similarity=0.140 Sum_probs=105.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCc-cccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESP-FCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~-~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
-+|+||-.-.-|||||+..|+.. +.|.... ...++. .+..+ +....|....+...++.+.++++|+||||+..|.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e--~v~ERvMDSnDl-EkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFRERE--EVAERVMDSNDL-EKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhcccccccc--chhhhhcCccch-hhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 47899999999999999998332 2222110 000000 00000 0011123344444444444788999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC-HHHHHHHHH-------hcC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT-TREAEMYAI-------KNQ 210 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~-~ee~~~~a~-------~~~ 210 (432)
.-....+.-.|++++++|+.+.. .-..+..+....+ .+.+.|+|.||+|.+..|... .++..++.. ++.
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 98889999999999999998642 1222323333222 346778899999987644211 123333322 356
Q ss_pred CcEEEEcCCCCC----------CHHHHHHHHHHHHh
Q psy3450 211 MAFFEVSPLCDF----------NIRESFTELSRRAL 236 (432)
Q Consensus 211 ~~~~evSAktg~----------nI~elf~~L~~~i~ 236 (432)
+|++..||+.|. ++..+|+.|++.+-
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 899999999874 57888888888773
No 300
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=98.65 E-value=1.3e-08 Score=70.69 Aligned_cols=39 Identities=38% Similarity=0.592 Sum_probs=36.5
Q ss_pred hhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhc
Q psy3450 316 VISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
|-+||+||+++|+.++.+..|++||||..||..|++|.-
T Consensus 3 ~~sLQhLCR~tI~~~~~~~~i~~lpLP~~LKdyL~~y~~ 41 (43)
T cd03735 3 VRPLQELCRKSIVATFGRENLARIPLNPVLKDYLKSFPF 41 (43)
T ss_pred ccCHHHHHHHHHHHhcCccccccCcCCHHHHHHHHhCCC
Confidence 579999999999999999999999999999999999953
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.65 E-value=2.1e-07 Score=92.45 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH--H
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT--R 200 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~--e 200 (432)
.+.+.|+||+|.-... ......+|.++++-+ +.+-+++......+. ++|.++|.||+|+........ .
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHH
Confidence 4678999999854211 234567888888843 444556555444443 367899999999864321110 0
Q ss_pred H----HHHHHHh---cCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 201 E----AEMYAIK---NQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 201 e----~~~~a~~---~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
. ...+.+. +..+++++||+++.|++++++++.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0 0111111 234699999999999999999999875
No 302
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.64 E-value=1.4e-08 Score=74.27 Aligned_cols=40 Identities=38% Similarity=0.614 Sum_probs=37.0
Q ss_pred hhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhccc
Q psy3450 317 ISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTS 356 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
.|||.||+++|+++++..+|++||||..||.+|+.|.-..
T Consensus 4 fSLQhLCR~~In~~t~~~~I~~LPLP~~LKdyLkeY~y~~ 43 (57)
T cd03739 4 FSLQYICRAVICRCTTYDGIDALPLPSMLQDFLKEYHYKQ 43 (57)
T ss_pred cCHHHHHHHHHHHhcCCCCcccCcCCHHHHHHHHhCCCCc
Confidence 5899999999999999999999999999999999996543
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.1e-07 Score=96.40 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=98.7
Q ss_pred hhhhhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
.+.+..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|++||+||+||..+.+. +...+..+.++++++.+|
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 34455689999999999999876 45566888876643 46899999999999643221 222233346788999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhccc--ccc-cccCCCceeEEEEEEee
Q psy3450 218 PLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGM--ERL-WRSNKGKHLLTYFQYCF 294 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l--~r~-~~~~~Gk~~~~y~~~~~ 294 (432)
|+++.|++++++.+...+ .-+.....+++..+.+ ..+....+ ..+ -+..+|||++...+..-
T Consensus 157 A~tg~GI~eL~~~L~~ki------~v~iG~SgVGKSSLIN---------~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~ 221 (352)
T PRK12289 157 VETGIGLEALLEQLRNKI------TVVAGPSGVGKSSLIN---------RLIPDVELRVGKVSGKLGRGRHTTRHVELFE 221 (352)
T ss_pred cCCCCCHHHHhhhhccce------EEEEeCCCCCHHHHHH---------HHcCccccccccccCCCCCCCCcCceeEEEE
Confidence 999999999999886532 2233333344433221 11111111 111 13468999976655442
Q ss_pred ----------ccccCCccccccccccccchhhh
Q psy3450 295 ----------AGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 295 ----------~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
.++..|.+ ..-.+++...|..+
T Consensus 222 l~~g~~liDTPG~~~~~l-~~~~~~l~~~F~e~ 253 (352)
T PRK12289 222 LPNGGLLADTPGFNQPDL-DCSPRELAHYFPEA 253 (352)
T ss_pred CCCCcEEEeCCCcccccc-ccCHHHHHhhHHHH
Confidence 24445555 23345677777664
No 304
>KOG3886|consensus
Probab=98.63 E-value=3.1e-08 Score=92.66 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=90.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch-
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT- 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~- 139 (432)
-||+++|.+|+|||++-..+|.+..- .+ . ...| .|+|+....+.+-| ++.+.+||.+||+.+..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a-----~D--~----~rlg---~tidveHsh~RflG-nl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA-----RD--T----RRLG---ATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh-----hh--h----hccC---Ccceeeehhhhhhh-hheeehhccCCcHHHHHH
Confidence 48999999999999986655322110 00 0 1111 22355544444444 46689999999985422
Q ss_pred ----hhhhcccCceEEEEEEeCCCCCChhhH---HHHHHHHHhhCCCCcEEEEEECccCCCC--cccCHHHH----HHHH
Q psy3450 140 ----IIRSYSRGAQGILLVYDITNKWSFDGI---DRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTTREA----EMYA 206 (432)
Q Consensus 140 ----l~~~~~~~ad~iIlV~Dvt~~~Sf~~l---~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~ee~----~~~a 206 (432)
.....+++.+++|+|||+...+-..++ ++-++.+.++.|+..+.+...|.||... ++...++- ..+.
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s 149 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLS 149 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhc
Confidence 234567899999999999877544444 4455666777788999999999999642 32222222 2222
Q ss_pred HhcCCcEEEEcCC
Q psy3450 207 IKNQMAFFEVSPL 219 (432)
Q Consensus 207 ~~~~~~~~evSAk 219 (432)
+..++.++.+|--
T Consensus 150 ~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 150 RPLECKCFPTSIW 162 (295)
T ss_pred ccccccccccchh
Confidence 2344567777654
No 305
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.2e-07 Score=84.67 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=65.5
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
+.+.+..++++|++|+|+|++++....+ ..+...+.. .+.|+++|+||+|+.++... ++...+.+..+.+++.+|
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence 3456677889999999999988654333 122222222 35799999999998532211 111233344567899999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy3450 218 PLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~ 236 (432)
|+++.|++++++.+.+.+.
T Consensus 78 a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 78 AKERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999988763
No 306
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.61 E-value=2.3e-08 Score=72.97 Aligned_cols=40 Identities=40% Similarity=0.585 Sum_probs=37.6
Q ss_pred hhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhccc
Q psy3450 317 ISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTS 356 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
.|||.||+.+|..+++..+|++||||..||.+|++|....
T Consensus 4 fSLQHLCR~~I~~~t~~~~I~~LPLP~~LK~YLkeY~y~~ 43 (56)
T cd03738 4 FSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKS 43 (56)
T ss_pred cCHHHHHHHHHHhcCCccccccCCCCHHHHHHHHhCCCcc
Confidence 6899999999999999999999999999999999997644
No 307
>PRK00098 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.6e-07 Score=93.33 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=66.6
Q ss_pred cccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCC
Q psy3450 144 YSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222 (432)
Q Consensus 144 ~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~ 222 (432)
...++|++++|+|+++++++..+ .+|+..+.. .++|+++|+||+||.++.+ ..++..+..+..+++++++||+++.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 35899999999999988776654 788877654 4689999999999963322 1223344556678899999999999
Q ss_pred CHHHHHHHHH
Q psy3450 223 NIRESFTELS 232 (432)
Q Consensus 223 nI~elf~~L~ 232 (432)
|++++++.+.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998873
No 308
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.59 E-value=1.6e-07 Score=95.72 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=73.0
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH----HHHhc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM----YAIKN 209 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~----~a~~~ 209 (432)
.++|..+...+++.++++++|+|+.+.. ..|..++.+...+.|+++|+||+||.. +.+..+++.+ ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~ 123 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKEL 123 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHc
Confidence 4678888889999999999999997654 345566665545689999999999964 3344444443 45666
Q ss_pred CC---cEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 210 QM---AFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 210 ~~---~~~evSAktg~nI~elf~~L~~~ 234 (432)
++ .++++||++|.|++++|+.+.+.
T Consensus 124 g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 124 GLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 76 48999999999999999998654
No 309
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.59 E-value=2e-07 Score=92.13 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=69.2
Q ss_pred hhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 142 RSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
+..+.++|.+++|+|++++. ++..+.+|+..+... ++|+++|+||+||.++.+ ......+....+.+++++||++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 34578999999999999998 888888998877653 589999999999964311 1122333455788999999999
Q ss_pred CCCHHHHHHHHHH
Q psy3450 221 DFNIRESFTELSR 233 (432)
Q Consensus 221 g~nI~elf~~L~~ 233 (432)
+.|+++++..|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988764
No 310
>KOG0458|consensus
Probab=98.57 E-value=6.4e-07 Score=93.62 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=100.7
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhc---------------------CCCCcccccCCCCcCccccCCCccccccceeE
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYL---------------------ESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~---------------------~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~ 114 (432)
.....+.++++|...+|||||+-+++. ...|.-.|.-.++......+ +....
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerG-------vTm~v 245 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERG-------VTMDV 245 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcc-------eeEEe
Confidence 344668999999999999999988721 11222222222222222222 34444
Q ss_pred EEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC---CChh---hHHHHHHHHHhhCCCCcEEEEEEC
Q psy3450 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK---WSFD---GIDRWLKEVEEHAPGVPKVLVGNR 188 (432)
Q Consensus 115 ~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~---~l~~~l~~i~~~~~~iPiILVgNK 188 (432)
....++-....+.|.|+||+..|..-.-.-...||+.+||+|++-. ..|+ ..++....++.. .-.-+||+.||
T Consensus 246 ~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNK 324 (603)
T KOG0458|consen 246 KTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINK 324 (603)
T ss_pred eeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeec
Confidence 5555666667789999999877755444445679999999998743 1233 122322223322 23457899999
Q ss_pred ccCCCCcccCHHHHH----HHH-HhcC-----CcEEEEcCCCCCCHHHH
Q psy3450 189 LHLAFNRTVTTREAE----MYA-IKNQ-----MAFFEVSPLCDFNIRES 227 (432)
Q Consensus 189 ~DL~~~r~v~~ee~~----~~a-~~~~-----~~~~evSAktg~nI~el 227 (432)
+|+.+=.+-..+++. .|. +..| +.|++||+.+|+|+-..
T Consensus 325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999653333334433 344 3333 47999999999997544
No 311
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.57 E-value=5.1e-07 Score=91.59 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=80.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...++|+|+|++|+|||||||.|.. -..+.+.....|...+|.+.... ...+.-.+.+||.||...-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrG----------l~~~d~~aA~tGv~etT~~~~~Y---~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRG----------LGHEDEGAAPTGVVETTMEPTPY---PHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT------------TTSTTS--SSSHSCCTS-EEE---E-SS-TTEEEEEE--GGGS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhC----------CCCCCcCcCCCCCCcCCCCCeeC---CCCCCCCCeEEeCCCCCCC
Confidence 3568999999999999999999821 11111111222322222222211 1122224799999996432
Q ss_pred chhhhhc-----ccCceEEEEEEeCCCCCChhhHHH-HHHHHHhhCCCCcEEEEEECccCC-------CCcccCH----H
Q psy3450 138 CTIIRSY-----SRGAQGILLVYDITNKWSFDGIDR-WLKEVEEHAPGVPKVLVGNRLHLA-------FNRTVTT----R 200 (432)
Q Consensus 138 ~~l~~~~-----~~~ad~iIlV~Dvt~~~Sf~~l~~-~l~~i~~~~~~iPiILVgNK~DL~-------~~r~v~~----e 200 (432)
..-...| +...|.+|++.+- .|.+..- +..++++. +.|+.+|-+|+|.. ..+...+ +
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~ 173 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQ 173 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHH
Confidence 2222233 4567998888762 3544433 34445554 47999999999961 1122222 2
Q ss_pred HHHHHHH----hcCC---cEEEEcCCC--CCCHHHHHHHHHHHHhhh
Q psy3450 201 EAEMYAI----KNQM---AFFEVSPLC--DFNIRESFTELSRRALQR 238 (432)
Q Consensus 201 e~~~~a~----~~~~---~~~evSAkt--g~nI~elf~~L~~~i~~~ 238 (432)
++++.+. +.++ ++|-+|+.+ ..++..+.+.|.+.+-..
T Consensus 174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 3333322 2233 688999875 446888888888877443
No 312
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.57 E-value=6.3e-07 Score=89.79 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=87.8
Q ss_pred eeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC----------CChhhHHHHHHHHHhhC--CC
Q psy3450 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK----------WSFDGIDRWLKEVEEHA--PG 179 (432)
Q Consensus 112 ~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~----------~Sf~~l~~~l~~i~~~~--~~ 179 (432)
+....+.++ .+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+++....+..+-... .+
T Consensus 151 i~~~~f~~~--~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~ 228 (317)
T cd00066 151 IVETKFTIK--NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFAN 228 (317)
T ss_pred eeEEEEEec--ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccC
Confidence 333444444 47789999999999999999999999999999999874 23444444444443322 57
Q ss_pred CcEEEEEECccCCCC---------------c-ccCHHHHHHHHHh----------cCCcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 180 VPKVLVGNRLHLAFN---------------R-TVTTREAEMYAIK----------NQMAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 180 iPiILVgNK~DL~~~---------------r-~v~~ee~~~~a~~----------~~~~~~evSAktg~nI~elf~~L~~ 233 (432)
.|++|++||.|+-.+ . .-..+++..+... ..+-...++|.+-.+++.+|+.+.+
T Consensus 229 ~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~ 308 (317)
T cd00066 229 TSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKD 308 (317)
T ss_pred CCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHH
Confidence 999999999997321 1 2234455444432 1233456888888899999999988
Q ss_pred HHhhhc
Q psy3450 234 RALQRN 239 (432)
Q Consensus 234 ~i~~~~ 239 (432)
.|+...
T Consensus 309 ~i~~~~ 314 (317)
T cd00066 309 IILQNN 314 (317)
T ss_pred HHHHHH
Confidence 887643
No 313
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.52 E-value=4.9e-07 Score=88.55 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=49.1
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe---------------EEEEE
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK---------------RVKLQ 127 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~---------------~v~l~ 127 (432)
|.+||.||||||||+|++.........+ ..+|++.....+.+.+. ..+++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~---------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~ 65 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY---------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIE 65 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc---------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEE
Confidence 4789999999999999983322211111 11223333333444332 13589
Q ss_pred EEeCCCCccc----chhhhhc---ccCceEEEEEEeCC
Q psy3450 128 LWDTSGQGRF----CTIIRSY---SRGAQGILLVYDIT 158 (432)
Q Consensus 128 i~Dt~G~e~~----~~l~~~~---~~~ad~iIlV~Dvt 158 (432)
++|+||..+- ..+.+.+ ++.+|++++|+|+.
T Consensus 66 lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 66 FVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 9999996432 2233333 47899999999874
No 314
>KOG1486|consensus
Probab=98.52 E-value=1.7e-06 Score=82.17 Aligned_cols=153 Identities=21% Similarity=0.192 Sum_probs=100.4
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
..+|+++|-|.||||||+..+. .+.+...+...+|.....-.+.++|. .+++.|.||.-+-.+
T Consensus 62 daRValIGfPSVGKStlLs~iT---------------~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKIT---------------STHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGAS 124 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhh---------------cchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccc
Confidence 4689999999999999999871 11122222222334444455667774 469999999643322
Q ss_pred h-------hhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHh------------------------------------
Q psy3450 140 I-------IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEE------------------------------------ 175 (432)
Q Consensus 140 l-------~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~------------------------------------ 175 (432)
. .-...+.||.++.|.|++..+.-.++ .+-++.+.-
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~ 204 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIY 204 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHH
Confidence 1 11345889999999999875433322 222222110
Q ss_pred ------------------------------hCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHH
Q psy3450 176 ------------------------------HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225 (432)
Q Consensus 176 ------------------------------~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~ 225 (432)
...-++.+.|-||+|. ++.++..++|++-+. +.+|+.-+.|++
T Consensus 205 ~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld 277 (364)
T KOG1486|consen 205 TILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLD 277 (364)
T ss_pred HHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHH
Confidence 0011578888999985 788888899887654 456777888999
Q ss_pred HHHHHHHHHHh
Q psy3450 226 ESFTELSRRAL 236 (432)
Q Consensus 226 elf~~L~~~i~ 236 (432)
.+++.+.+.+.
T Consensus 278 ~lle~iWe~l~ 288 (364)
T KOG1486|consen 278 RLLERIWEELN 288 (364)
T ss_pred HHHHHHHHHhc
Confidence 99999988873
No 315
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.50 E-value=2.2e-06 Score=86.76 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=88.8
Q ss_pred ceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC----------CChhhHHHHHHHHHhhC--C
Q psy3450 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK----------WSFDGIDRWLKEVEEHA--P 178 (432)
Q Consensus 111 d~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~----------~Sf~~l~~~l~~i~~~~--~ 178 (432)
.+....+.+++ +.+.+||.+|+...+..|..++.+++++|+|+|+++. ..+++....+..+-... .
T Consensus 173 Gi~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 173 GIQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ceEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 34445555555 5679999999999999999999999999999999973 23555544555554432 5
Q ss_pred CCcEEEEEECccCCCC---------------cccCHHHHHHHHHh-----c------CCcEEEEcCCCCCCHHHHHHHHH
Q psy3450 179 GVPKVLVGNRLHLAFN---------------RTVTTREAEMYAIK-----N------QMAFFEVSPLCDFNIRESFTELS 232 (432)
Q Consensus 179 ~iPiILVgNK~DL~~~---------------r~v~~ee~~~~a~~-----~------~~~~~evSAktg~nI~elf~~L~ 232 (432)
+.|++|++||.|+..+ .....+.+..+..+ . .+-...++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 7999999999998321 11233444444332 1 13345678888889999999988
Q ss_pred HHHhhhc
Q psy3450 233 RRALQRN 239 (432)
Q Consensus 233 ~~i~~~~ 239 (432)
..+++..
T Consensus 331 ~~I~~~~ 337 (342)
T smart00275 331 DIILQRN 337 (342)
T ss_pred HHHHHHH
Confidence 8886643
No 316
>KOG0461|consensus
Probab=98.48 E-value=2.1e-06 Score=84.72 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=95.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-------CCeEEEEEEEeCC
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-------DGKRVKLQLWDTS 132 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-------~~~~v~l~i~Dt~ 132 (432)
.+++-++|.-.+|||+|.+++-.-..-......++.. +...|.|.-...+.+ .++..++.++|.|
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~--------eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQST--------ERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCccc--------ccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 4899999999999999999982211111111111111 111223333222222 4677889999999
Q ss_pred CCcccchhhhhcc---cCceEEEEEEeCCCCCChhhHHH-HHHHHHhhCCCCcEEEEEECccCCCC--cccCHHH-HHHH
Q psy3450 133 GQGRFCTIIRSYS---RGAQGILLVYDITNKWSFDGIDR-WLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTTRE-AEMY 205 (432)
Q Consensus 133 G~e~~~~l~~~~~---~~ad~iIlV~Dvt~~~Sf~~l~~-~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~ee-~~~~ 205 (432)
|+.. +++..+ .-.|..++|.|+.....-+..+- .+.++. + ...++|.||+|+..+ |+-..++ ..++
T Consensus 79 GHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c--~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 79 GHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--C--KKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred CcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--c--cceEEEEeccccccchhhhhHHHHHHHHH
Confidence 9853 334444 33578899999986533332221 122221 1 346888899987543 2222222 2223
Q ss_pred HHhc-------CCcEEEEcCCCC----CCHHHHHHHHHHHHhhhc
Q psy3450 206 AIKN-------QMAFFEVSPLCD----FNIRESFTELSRRALQRN 239 (432)
Q Consensus 206 a~~~-------~~~~~evSAktg----~nI~elf~~L~~~i~~~~ 239 (432)
.+.+ +.|++++||+.| ++|.|+.+.|-.++.+..
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 2221 369999999999 677777777777776543
No 317
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.48 E-value=6.8e-07 Score=80.25 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=45.3
Q ss_pred EEEEEeCCCCcc----cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 125 KLQLWDTSGQGR----FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 125 ~l~i~Dt~G~e~----~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
.+.|+||||... ...++..|+..+|++|+|.+.+...+-.+...|.+...... ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcCC
Confidence 478999999742 34567788899999999999988665555555555554443 3489999985
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.47 E-value=1.6e-06 Score=92.84 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=73.9
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.-++.++|+|+|.+||||||++|.++....+..... .+.. ..........++ ..+.++||||..
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~--------~~~T------Tr~~ei~~~idG--~~L~VIDTPGL~ 177 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAF--------GMGT------TSVQEIEGLVQG--VKIRVIDTPGLK 177 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCC--------CCCc------eEEEEEEEEECC--ceEEEEECCCCC
Confidence 346678999999999999999999855444432110 0010 011112223455 457999999976
Q ss_pred ccc-------hh---hhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCC---CCcEEEEEECccCCC
Q psy3450 136 RFC-------TI---IRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAP---GVPKVLVGNRLHLAF 193 (432)
Q Consensus 136 ~~~-------~l---~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~---~iPiILVgNK~DL~~ 193 (432)
... .+ ...++. ..|++|+|..++......+-..+++.+.+.+. -.-+|||.+..|...
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 431 11 112333 58999999987644332222356666665542 135899999999754
No 319
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=8.7e-07 Score=89.72 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=68.0
Q ss_pred ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc-cCHHHHHHHHHhcCCcEEEEcCCCCCC
Q psy3450 145 SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT-VTTREAEMYAIKNQMAFFEVSPLCDFN 223 (432)
Q Consensus 145 ~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~-v~~ee~~~~a~~~~~~~~evSAktg~n 223 (432)
..++|.+++|++++...++..+.+|+..+.. .++|++||+||+||.++.+ ...++.....+..+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 3569999999999988899999999886643 4589999999999964321 111222333456788999999999999
Q ss_pred HHHHHHHHHHH
Q psy3450 224 IRESFTELSRR 234 (432)
Q Consensus 224 I~elf~~L~~~ 234 (432)
++++++.|...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999988653
No 320
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.46 E-value=2.4e-06 Score=84.14 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=75.6
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc-
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF- 137 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~- 137 (432)
..++|+|+|.+|+|||||+|.|+...-.... ........ .. .....+......+.-++..+.|.|+||||-...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~---~~~~~~~~-~~-~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISED---SSIPPPSA-SI-SRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS------------S--------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhccccccc---cccccccc-cc-ccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 4689999999999999999998654433321 00000000 00 001112333344555788899999999994211
Q ss_pred ------chh-------hhhcc-------------cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 138 ------CTI-------IRSYS-------------RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 138 ------~~l-------~~~~~-------------~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
..+ ...++ ...|++|+..+.+.. .+..++ +..+++....+++|-|..|+|.
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADT 154 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGG
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccc
Confidence 000 00111 346999999997653 233221 2344555556899999999997
Q ss_pred CCCccc--CHHHHHHHHHhcCCcEEEE
Q psy3450 192 AFNRTV--TTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 192 ~~~r~v--~~ee~~~~a~~~~~~~~ev 216 (432)
....+. -.+.+.+-.+.+++.+|.-
T Consensus 155 lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred cCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 432211 1122333445567765553
No 321
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=98.46 E-value=7.8e-08 Score=66.40 Aligned_cols=38 Identities=42% Similarity=0.474 Sum_probs=35.9
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
.|-|||++||.+|..++....|++||||..||..|+.|
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~~~i~~LpLP~~Lk~yL~~~ 39 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKGYLLEK 39 (41)
T ss_pred CcccHHHHHHHHHHHHcchhhcccCCCCHHHHHHHHcC
Confidence 57899999999999999989999999999999999887
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.41 E-value=2.7e-06 Score=81.74 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=44.0
Q ss_pred EEEEEEeCCCCccc-------------chhhhhccc-CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 124 VKLQLWDTSGQGRF-------------CTIIRSYSR-GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 124 v~l~i~Dt~G~e~~-------------~~l~~~~~~-~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
..+.++||||.... ..+...|++ ..+++++|+|++....-.+..++.+.+.. .+.|+++|.||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 56889999997421 223456777 45689999998653222222333444433 357999999999
Q ss_pred cCCC
Q psy3450 190 HLAF 193 (432)
Q Consensus 190 DL~~ 193 (432)
|..+
T Consensus 203 D~~~ 206 (240)
T smart00053 203 DLMD 206 (240)
T ss_pred CCCC
Confidence 9864
No 323
>KOG0410|consensus
Probab=98.37 E-value=5.3e-07 Score=88.33 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=97.2
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......--|.+||-.|+|||||+++|....-.++..+..+. |...+...+.... .+.+.||-|-
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATL---------------DpT~h~a~Lpsg~-~vlltDTvGF 236 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATL---------------DPTLHSAHLPSGN-FVLLTDTVGF 236 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheec---------------cchhhhccCCCCc-EEEEeechhh
Confidence 33444557899999999999999998433333332222222 2222333333322 2578899983
Q ss_pred c--ccchhhhh------cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCc----EEEEEECccCCCCcccCHHH
Q psy3450 135 G--RFCTIIRS------YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVP----KVLVGNRLHLAFNRTVTTRE 201 (432)
Q Consensus 135 e--~~~~l~~~------~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iP----iILVgNK~DL~~~r~v~~ee 201 (432)
- --..+... -...+|.+|.|.|+++|+--+.....+.-+.... +..| ++=|-||+|.... .+..|
T Consensus 237 isdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~-~~e~E- 314 (410)
T KOG0410|consen 237 ISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED-EVEEE- 314 (410)
T ss_pred hhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc-cCccc-
Confidence 2 11112221 2367999999999999976555555555555443 2222 5567788887432 22211
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 202 AEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 202 ~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+++ -+.+||++|.|.+++.+.+-..+.....
T Consensus 315 ------~n~--~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 315 ------KNL--DVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred ------cCC--ccccccccCccHHHHHHHHHHHhhhhhe
Confidence 222 5779999999999999998877765543
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.37 E-value=2.4e-06 Score=84.00 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=40.1
Q ss_pred CcEEEEEECccCCCCcccCHHHHHHHHHhc--CCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKN--QMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 180 iPiILVgNK~DL~~~r~v~~ee~~~~a~~~--~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.+-++|.||+|+........++..+..+.. +++++++||++|.|++++.++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999642222233444444443 4799999999999999999999764
No 325
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=98.37 E-value=1.9e-07 Score=63.91 Aligned_cols=38 Identities=50% Similarity=0.600 Sum_probs=35.6
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+|-|||++||.+|..+....+|++||||..|+..|+.|
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~~~i~~LpLP~~Lk~yL~~y 39 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRRDLIDQLPLPRRLKDYLKEY 39 (39)
T ss_pred CCCCHHHHHHHHHHHHccccccccCCCCHHHHHHHHcC
Confidence 46899999999999999889999999999999999876
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=2.1e-06 Score=76.85 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=58.4
Q ss_pred cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCC
Q psy3450 144 YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223 (432)
Q Consensus 144 ~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~n 223 (432)
.++++|++++|.|+.++..-.+ ..+...+.....+.|+++|.||+|+.++.+. .+....+.+.+....+.+||+.+.|
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccccc
Confidence 4578999999999998743211 2223333333345899999999999543221 1222233332333457899999999
Q ss_pred HHHHHHHHHHHH
Q psy3450 224 IRESFTELSRRA 235 (432)
Q Consensus 224 I~elf~~L~~~i 235 (432)
++++++.+...+
T Consensus 83 ~~~L~~~l~~~~ 94 (157)
T cd01858 83 KGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 327
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=98.31 E-value=3.2e-07 Score=64.21 Aligned_cols=38 Identities=42% Similarity=0.523 Sum_probs=35.6
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
.|-|||++||.+|..+.....|++||||..||..|+.|
T Consensus 6 ~~~sLqhLCR~~I~~~~~~~~i~~LpLP~~lk~yL~~y 43 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTRTDQIKTLPLPPKLKDYLSYY 43 (43)
T ss_pred CCCCHHHHHHHHHHHHcCCcCcccCCCCHHHHHHHHhC
Confidence 45899999999999999999999999999999999887
No 328
>KOG0082|consensus
Probab=98.29 E-value=8e-06 Score=82.04 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCC--h--------hhHHHHHHHHHhhC--CCCcEEEEEECccC
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS--F--------DGIDRWLKEVEEHA--PGVPKVLVGNRLHL 191 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~S--f--------~~l~~~l~~i~~~~--~~iPiILVgNK~DL 191 (432)
..+.++|++||..-+.-|-.++.+++++|||.++++-+- + .+..++++.|-+.. .+.++||..||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 668999999998778888899999999999999885321 1 12233344443332 57999999999998
Q ss_pred CCC---------------cccCHHHHHHHHHhc----------CCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 192 AFN---------------RTVTTREAEMYAIKN----------QMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 192 ~~~---------------r~v~~ee~~~~a~~~----------~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
-++ ..-..+++..+.+.. .+-+..+.|.+-.||+.+|+.+.+.+...+
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 321 112445555544321 123445688888899999999999887653
No 329
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.4e-05 Score=80.37 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=53.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccc-cceeEEEEEEC--CeEEEEEEEeCCCCc--
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM-LAYKTTTILLD--GKRVKLQLWDTSGQG-- 135 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~t-id~~~~~i~i~--~~~v~l~i~Dt~G~e-- 135 (432)
+++-|||.||||||||.|.+...+--..+|...+.++ ..++..-++. .+.....+..+ -....+.|+|.+|.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIeP--N~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEP--NVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccC--CeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999844442222222222221 1121111000 00000000000 124568999999853
Q ss_pred --ccchhhhhc---ccCceEEEEEEeCC
Q psy3450 136 --RFCTIIRSY---SRGAQGILLVYDIT 158 (432)
Q Consensus 136 --~~~~l~~~~---~~~ad~iIlV~Dvt 158 (432)
+-..+-+.| +|.+|+++.|+|+.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 344555555 48999999999986
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.2e-05 Score=78.96 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc--CCCCcccccCCCCcCccccCCCcccccc----------ceeEE-EEEEC----
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL--ESRFPRFWLDGSSESPFCSGSGKYDDML----------AYKTT-TILLD---- 120 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~--~~~~~~~~~~~~~~~~~~~~ig~~~~ti----------d~~~~-~i~i~---- 120 (432)
+..++|-++|.-.-|||||...+.. ..++++. ..+..+...|..+..+ .|... .....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseE-----lkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~ 82 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEE-----LKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET 82 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHH-----HhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc
Confidence 5678999999999999999998711 0111110 0011111112111110 00000 00000
Q ss_pred CeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cC
Q psy3450 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VT 198 (432)
Q Consensus 121 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~ 198 (432)
.-.-.+.|.|.||+|-.....-+-..-.|+.|||.+++.+..--.-.+-+..+.-. .-..+|+|-||+||..+.+ ..
T Consensus 83 ~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 83 ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHHHHH
Confidence 11235789999999854332222223359999999988753322223322222222 1246899999999964322 23
Q ss_pred HHHHHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 199 TREAEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 199 ~ee~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++++|.+.- +.+++.+||..+.||+-+++.|.+.+-.
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 44556666542 5799999999999999999999998854
No 331
>KOG0468|consensus
Probab=98.22 E-value=7.1e-06 Score=86.76 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=83.8
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCC-Ccccc--ccceeEEEEE---ECCeEEEEEEEe
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS-GKYDD--MLAYKTTTIL---LDGKRVKLQLWD 130 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~i-g~~~~--tid~~~~~i~---i~~~~v~l~i~D 130 (432)
.+....|.++|.-+.|||+|+..| ....-+.........-.+..+. -+... ++.....++- .+++.+-++|.|
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~L-v~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLL-VEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhh-ceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 345678999999999999999987 4443333221111111111000 00000 1122222222 256788899999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
|||+-.|..-....++-+|++++|+|+.+.-.+.. .+.++..-+ .+.|+++|.||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh--ccCcEEEEEehhHH
Confidence 99999998888888999999999999988776654 233333222 35899999999995
No 332
>KOG0084|consensus
Probab=98.21 E-value=3.8e-07 Score=83.52 Aligned_cols=99 Identities=25% Similarity=0.338 Sum_probs=69.8
Q ss_pred cccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCccc
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRF 89 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~ 89 (432)
+..+||+|||++|||+||||||++.||.. ..+.+.+..+.+.|+.+|-+.+- ||+--++-|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~----gk~iKlQIW--------- 63 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELD----GKTIKLQIW--------- 63 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeec----ceEEEEEee---------
Confidence 45789999999999999999999999999 88888889999999999877775 666545544
Q ss_pred ccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 90 WLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 90 ~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
...-.++-.+.+. +| +.+..--+.++|..-++.|..+-
T Consensus 64 -DTAGQERFrtit~-------sy------YR~ahGii~vyDiT~~~SF~~v~ 101 (205)
T KOG0084|consen 64 -DTAGQERFRTITS-------SY------YRGAHGIIFVYDITKQESFNNVK 101 (205)
T ss_pred -eccccHHHhhhhH-------hh------ccCCCeEEEEEEcccHHHhhhHH
Confidence 1100011011111 22 23444457889999888886653
No 333
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=5.6e-06 Score=90.43 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=85.9
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcc--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPR--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+..-+|.|+|.-..|||||..+++- .+.... ...++.......+..-...-|+.....++.+.+ .+.++++||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 3456899999999999999999832 222221 001010000000000001123444455555665 578899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
-+|..-....++-+|++++|+|+...-..+.-.-|.+..+ .++|.+++.||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~---~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK---YGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh---cCCCeEEEEECcccc
Confidence 9999888899999999999999987655444455554433 358999999999974
No 334
>KOG1144|consensus
Probab=98.18 E-value=8.6e-06 Score=87.03 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=75.7
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc-------
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR------- 195 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r------- 195 (432)
+.++||||++.|..++.....-||.+|+|+|+... .+.+. +..++. .+.|+||+.||+|..-.+
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~--rktpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM--RKTPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHh--cCCCeEEeehhhhhhcccccCCCch
Confidence 68899999999999999999999999999999753 33332 233333 358999999999962110
Q ss_pred ----------ccCH-------HHHHHHHHh-cC-------------CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 196 ----------TVTT-------REAEMYAIK-NQ-------------MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 196 ----------~v~~-------ee~~~~a~~-~~-------------~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.+.. .-+.+|+++ ++ +.++++||.+|.||-+|+-+|++.....+
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0100 012233332 11 35788999999999999999998775543
No 335
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.1e-05 Score=82.18 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=96.7
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIR 142 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~ 142 (432)
|...|.-.-|||+|+..+ ....... -+..+....|+|.........+ ..+.|+|+||.+++-.-.-
T Consensus 3 i~t~GhidHgkT~L~~al----------tg~~~d~--l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 3 IGTAGHIDHGKTTLLKAL----------TGGVTDR--LPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred EEEeeeeeccchhhhhhh----------ccccccc--chhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHH
Confidence 556677778999999987 1111111 1222223334454444333333 4789999999998755444
Q ss_pred hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh---cCCcEEEEcCC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK---NQMAFFEVSPL 219 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~---~~~~~~evSAk 219 (432)
.-+...|..+||+|.++.-.-+. .+-+..+... .-...++|.+|+|..++..+ .+...+.... -++++|.+|++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qt-gEhL~iLdll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQT-GEHLLILDLL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhh-HHHHHHHHhc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccc
Confidence 55678899999999865432222 1222222222 22346999999998653311 1222222222 23588999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy3450 220 CDFNIRESFTELSRRA 235 (432)
Q Consensus 220 tg~nI~elf~~L~~~i 235 (432)
+|.||+++.++|....
T Consensus 146 ~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 146 TGRGIEELKNELIDLL 161 (447)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999999988
No 336
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.16 E-value=8.5e-06 Score=72.78 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred eEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHH
Q psy3450 149 QGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228 (432)
Q Consensus 149 d~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf 228 (432)
|++|+|+|+.++.+... .|+........+.|+++|.||+|+..+.++ .+....+.+..+..++.+||++|.|+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence 68999999998866553 344311111246899999999999532211 111122333345678999999999999999
Q ss_pred HHHHHHH
Q psy3450 229 TELSRRA 235 (432)
Q Consensus 229 ~~L~~~i 235 (432)
+.+.+..
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9987764
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.15 E-value=6.6e-06 Score=72.32 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=54.6
Q ss_pred hcccCceEEEEEEeCCCCCChh--hHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFD--GIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~--~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
..++++|++++|+|+.++.+.. .+.+|+... ..+.|+++|.||+|+.++.. .++..++.+..+..++++||++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecC
Confidence 4568899999999999887654 344554432 24689999999999954332 2234455556678899999998
Q ss_pred CCC
Q psy3450 221 DFN 223 (432)
Q Consensus 221 g~n 223 (432)
+.+
T Consensus 82 ~~~ 84 (141)
T cd01857 82 ENA 84 (141)
T ss_pred CCc
Confidence 876
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.13 E-value=5.8e-06 Score=76.09 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
..+.|+...|. ... .-++.-..+.-|+|.|++..+.-- .+-...+. ..=++|.||.||...-..+.+...
T Consensus 97 ~Dll~iEs~GN--L~~-~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~-----~aDllVInK~DLa~~v~~dlevm~ 166 (202)
T COG0378 97 LDLLFIESVGN--LVC-PFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF-----KADLLVINKTDLAPYVGADLEVMA 166 (202)
T ss_pred CCEEEEecCcc--eec-ccCcchhhceEEEEEECCCCCCCc--ccCCCcee-----EeeEEEEehHHhHHHhCccHHHHH
Confidence 45566666661 111 011222233778888988654211 11011111 123789999999765555567666
Q ss_pred HHHHhc--CCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 204 MYAIKN--QMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 204 ~~a~~~--~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+-+++. +.+++++|+++|.|++++++++....
T Consensus 167 ~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 167 RDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 666665 47999999999999999999987654
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.12 E-value=6.2e-06 Score=74.94 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=61.2
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
......++++|++++|+|++++....+ ..+... ..+.|+++|.||+|+..+..+ .+..++.+..+..++.+||
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa 83 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----LGNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNA 83 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----hcCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEEC
Confidence 334567789999999999987654322 122222 234799999999999533211 1111222334457899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy3450 219 LCDFNIRESFTELSRRA 235 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i 235 (432)
+++.|++++.+.+...+
T Consensus 84 ~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 84 KSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 99999999999998876
No 340
>PRK13796 GTPase YqeH; Provisional
Probab=98.05 E-value=1.8e-05 Score=80.77 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=64.0
Q ss_pred ccchhhhhcccCce-EEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHH----HHhcC
Q psy3450 136 RFCTIIRSYSRGAQ-GILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMY----AIKNQ 210 (432)
Q Consensus 136 ~~~~l~~~~~~~ad-~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~----a~~~~ 210 (432)
.|..+.... ...+ .+++|+|+.|.. ..|...+.+...+.|+++|+||+||.. +....+++.++ ++..+
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcC
Confidence 444444333 4444 899999987743 345566665555689999999999964 33334444433 55566
Q ss_pred C---cEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 211 M---AFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 211 ~---~~~evSAktg~nI~elf~~L~~~ 234 (432)
+ .++.+||+++.|++++++.+.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5 68999999999999999999765
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.03 E-value=4e-05 Score=76.70 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=83.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+.|+++|++|.|||||+|.||...-......++.......+++ .+....-.+.-++..++|.++||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~-----~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTL-----EIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcce-----EEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 5678999999999999999999855421111100011110111222 12333344445677889999999995321
Q ss_pred ---c-----------hhhhhcc--------------cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 138 ---C-----------TIIRSYS--------------RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 138 ---~-----------~l~~~~~--------------~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
. .....|+ .+.+++|+..-.+. ..+..++ +..+++....+.+|=|.-|+
T Consensus 96 idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~Ka 172 (373)
T COG5019 96 IDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKA 172 (373)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeecc
Confidence 1 1111222 24688888887553 2333331 23333444456788888999
Q ss_pred cCCCC--cccCHHHHHHHHHhcCCcEEE
Q psy3450 190 HLAFN--RTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 190 DL~~~--r~v~~ee~~~~a~~~~~~~~e 215 (432)
|.-.. ...-.+.+.+....+++++|-
T Consensus 173 D~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 173 DTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 97432 112223344555667888774
No 342
>KOG2655|consensus
Probab=98.00 E-value=7.2e-05 Score=75.32 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=93.3
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+.++++|++|.|||||+|.||...-.......+....+ ..+. .+......+.-+|-.++|.+.||||-
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~-~~t~-----~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERI-KETV-----EIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCc-cccc-----eeeeeeeeecCCCeEEeeEEeccCCC
Confidence 34456789999999999999999999776332211111111100 0011 12333444455778899999999994
Q ss_pred ccc-------ch-------hhhhcc-------------cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEE
Q psy3450 135 GRF-------CT-------IIRSYS-------------RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGN 187 (432)
Q Consensus 135 e~~-------~~-------l~~~~~-------------~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgN 187 (432)
.+. .. ....|+ ...+++|+....+.. .+..++ +..+++....+.+|-|.-
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~ 166 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIA 166 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceee
Confidence 211 11 111222 257888888875532 233331 233444455678888889
Q ss_pred CccCCCCcc--cCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 188 RLHLAFNRT--VTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 188 K~DL~~~r~--v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
|+|.....+ .-.+.+.+-+..+++++|.-..... ++.+....+.+
T Consensus 167 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l 213 (366)
T KOG2655|consen 167 KADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDL 213 (366)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHH
Confidence 999743221 1223344455566776665544333 44444444444
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.99 E-value=1.6e-05 Score=76.56 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=60.5
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+.+.|+.|.|.-.-.. ....-+|.+++|.-..-.+..+.++.=+.++ .=|+|.||.|+...+ ....+.+
T Consensus 122 ~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~~gA~-~~~~~l~ 190 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADRPGAD-RTVRDLR 190 (266)
T ss_dssp -SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SHHHHH-HHHHHHH
T ss_pred CCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCChHHHH-HHHHHHH
Confidence 4567888876422111 2345689999999876666666554444443 237889999964321 1122222
Q ss_pred HHHH---h----cCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 204 MYAI---K----NQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 204 ~~a~---~----~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.... . +..+++.+||.++.||+++++.|.+...
T Consensus 191 ~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 191 SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2222 1 2248999999999999999999987653
No 344
>KOG0086|consensus
Probab=97.95 E-value=1.8e-06 Score=75.94 Aligned_cols=110 Identities=21% Similarity=0.369 Sum_probs=75.5
Q ss_pred cccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCccccc
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWL 91 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~ 91 (432)
.||||||++++|.+|.||++++++|.. ..|....+.+.+.++--||+=|| ||+--++-| .
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVG----gK~vKLQIW----------D 64 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVG----GKTVKLQIW----------D 64 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeec----CcEEEEEEe----------e
Confidence 799999999999999999999999998 77777888899999999999999 776555544 1
Q ss_pred CCCCcCccccCCCccccc-cceeEEEEEECCeEEEEEEEeCCCCcccchhhhhc-----ccCceEEEEEE
Q psy3450 92 DGSSESPFCSGSGKYDDM-LAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSY-----SRGAQGILLVY 155 (432)
Q Consensus 92 ~~~~~~~~~~~ig~~~~t-id~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~-----~~~ad~iIlV~ 155 (432)
+.+.+..+.. ..| +.|..-.+.++|....+.|..+.+.. +...+++|++.
T Consensus 65 --------TAGQErFRSVtRsY------YRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~ 120 (214)
T KOG0086|consen 65 --------TAGQERFRSVTRSY------YRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILC 120 (214)
T ss_pred --------cccHHHHHHHHHHH------hccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEe
Confidence 1111100000 011 23444457889999888887765532 33345555443
No 345
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.94 E-value=5.4e-06 Score=57.29 Aligned_cols=37 Identities=43% Similarity=0.600 Sum_probs=33.3
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
+|-|||.+|+.+|..|+. .|++||||..||..|+.|-
T Consensus 2 ~~~sLQhLCR~~I~~~~~--~i~~LpLP~~Lk~yL~~y~ 38 (41)
T cd03736 2 STPSLQHLCRITINKCTR--QIQELPLPTRLKDYLTEYT 38 (41)
T ss_pred CCCCHHHHHHHHHHHhcC--CCCcCCCCHHHHHHHHHCC
Confidence 467999999999999865 9999999999999999884
No 346
>cd03741 SOCS_SOCS7 SOCS (suppressors of cytokine signaling) box of SOCS7-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS7 is important in the functioning of neuronal cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.91 E-value=5.9e-06 Score=59.22 Aligned_cols=40 Identities=33% Similarity=0.355 Sum_probs=36.4
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhc
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAM 354 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
+|-|||.+|+.+|..+.....|++||||..||..|+.|-.
T Consensus 2 ~v~SLQhLCR~~Ir~~~~~~~i~~LPLP~~Lk~YL~~~~y 41 (49)
T cd03741 2 NVQSLQHLCRFVIRKLVRRDHIPALPLPRRLIDYLREKHY 41 (49)
T ss_pred CCccHHHHHHHHHHHHccccccccCCCCHHHHHHHhccCC
Confidence 4689999999999999988899999999999999988754
No 347
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=8e-05 Score=75.94 Aligned_cols=148 Identities=13% Similarity=0.099 Sum_probs=89.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcC--------ccccCCCccccccceeEEEEEECCeEEEEEEEeCC
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSES--------PFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTS 132 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~--------~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~ 132 (432)
-.++||-.|.+|||||..+|++-+...+ ..+.... .....++ ....|......++++.....+++.|||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq--~AG~Vk~rk~~~~a~SDWM~iE-kqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQ--EAGTVKGRKSGKHAKSDWMEIE-KQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhh--hcceeeeccCCcccccHHHHHH-HhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3578999999999999999854332211 0111100 0000000 011234555555666666778999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
|++.|..-.-..+..+|.++.|.|+...-.-+. .++++-.+. .++||+-..||+|.+. | -+.|-..+.-+.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR~~-r-dP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDREG-R-DPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeecccccc-C-ChHHHHHHHHHHhCcc
Confidence 999998766667778999999999876532221 333333332 4699999999999743 2 2334444555556654
Q ss_pred EEEE
Q psy3450 213 FFEV 216 (432)
Q Consensus 213 ~~ev 216 (432)
..++
T Consensus 165 ~~Pi 168 (528)
T COG4108 165 CAPI 168 (528)
T ss_pred eecc
Confidence 4333
No 348
>KOG1954|consensus
Probab=97.90 E-value=6.4e-05 Score=75.07 Aligned_cols=133 Identities=19% Similarity=0.280 Sum_probs=81.0
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccC--CCccccccceeEEEEEEC-------------
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSG--SGKYDDMLAYKTTTILLD------------- 120 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~--ig~~~~tid~~~~~i~i~------------- 120 (432)
+.+..--|+++|.-..||||+|+-| .++.|+.....+..+..+-.. .|....+++=. .+.++
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yL-le~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGn--al~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYL-LEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGN--ALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHH-HhCCCCccccCCCCCcceeEEEEecCcccccCCc--eeeecCCCchhhhhhhHH
Confidence 3444556999999999999999986 666666443333332221110 01111111000 01111
Q ss_pred ------------C-eEEEEEEEeCCCCc-----------ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh
Q psy3450 121 ------------G-KRVKLQLWDTSGQG-----------RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176 (432)
Q Consensus 121 ------------~-~~v~l~i~Dt~G~e-----------~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~ 176 (432)
+ ---.+.|+||||.- .|......|..++|.||++||....+--++..+.+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 0 01147899999952 34556678889999999999987666556666667766655
Q ss_pred CCCCcEEEEEECccCCC
Q psy3450 177 APGVPKVLVGNRLHLAF 193 (432)
Q Consensus 177 ~~~iPiILVgNK~DL~~ 193 (432)
.. .+-||.||.|..+
T Consensus 211 Ed--kiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 ED--KIRVVLNKADQVD 225 (532)
T ss_pred cc--eeEEEeccccccC
Confidence 33 4668899999754
No 349
>KOG0087|consensus
Probab=97.90 E-value=5.2e-06 Score=76.89 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=53.5
Q ss_pred ccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhh
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L 80 (432)
.++||+||+++|||++|||+.++.|+.. ++|.....++.+.++.-+-+.|+ ||+-.++-|
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd----~k~vkaqIW 68 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVD----GKTVKAQIW 68 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeec----CcEEEEeee
Confidence 5899999999999999999999999999 89998889999999888888888 787666655
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.88 E-value=5.4e-05 Score=74.33 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=61.9
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
....++.+|++|+|+|+.++.+..+ .++.++. .+.|+++|.||+|+.++... +...++.++.+.+++.+||++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~ 87 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKK 87 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCC
Confidence 3456789999999999987755433 1222222 35799999999999532111 111222233456889999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy3450 221 DFNIRESFTELSRRALQ 237 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~ 237 (432)
+.|++++.+.+.+.+.+
T Consensus 88 ~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKE 104 (276)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999998877644
No 351
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=97.86 E-value=8.9e-06 Score=56.04 Aligned_cols=37 Identities=38% Similarity=0.552 Sum_probs=33.5
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
+|-|||.||+.+|..|+. .|++||||..|+..|+.|-
T Consensus 2 ~~~sLQHLCR~~I~~~~~--~i~~LpLP~~L~~yL~~y~ 38 (41)
T cd03734 2 SARSLQHLCRLVINRLVT--DVDCLPLPRRMADYLRQYP 38 (41)
T ss_pred CCccHHHHHHHHHHHhcC--CcccCCCCHHHHHHHHHCC
Confidence 357999999999999985 7899999999999999984
No 352
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.83 E-value=3.4e-05 Score=67.82 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=34.2
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+++++|.+|||||||+|++ .+..... .....|. ......+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l-~~~~~~~----------~~~~~~~-----~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINAL-VGKKKVS----------VSATPGK-----TKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHH-hCCCcee----------eCCCCCc-----ccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998 3322211 1111221 12233444554 4699999995
No 353
>KOG2486|consensus
Probab=97.83 E-value=4.5e-05 Score=73.70 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=84.9
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC--
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~-- 134 (432)
.+....++++|.+|||||+|||.++......... .+..| +. +.+..-...-.+.+.|.||-
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~---------k~K~g------~T--q~in~f~v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTS---------KSKNG------KT--QAINHFHVGKSWYEVDLPGYGR 195 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhc---------CCCCc------cc--eeeeeeeccceEEEEecCCccc
Confidence 3556899999999999999999873332221100 01112 11 11111111224678899992
Q ss_pred --------cccchhhhhcccCc---eEEEEEEeCCCCC-Chh-hHHHHHHHHHhhCCCCcEEEEEECccCCCC------c
Q psy3450 135 --------GRFCTIIRSYSRGA---QGILLVYDITNKW-SFD-GIDRWLKEVEEHAPGVPKVLVGNRLHLAFN------R 195 (432)
Q Consensus 135 --------e~~~~l~~~~~~~a---d~iIlV~Dvt~~~-Sf~-~l~~~l~~i~~~~~~iPiILVgNK~DL~~~------r 195 (432)
+++..+...|+.+- --+++..|++.+- --+ ....|+.+ .++|+.+|.||+|.... +
T Consensus 196 a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kK 270 (320)
T KOG2486|consen 196 AGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTKCDKQKKVKRTGKK 270 (320)
T ss_pred ccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeehhhhhhhccccccC
Confidence 23445555665322 2344555665431 111 22344432 35999999999997431 1
Q ss_pred ccCHHH--HHHHHHh---cCCcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 196 TVTTRE--AEMYAIK---NQMAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 196 ~v~~ee--~~~~a~~---~~~~~~evSAktg~nI~elf~~L~~ 233 (432)
...... ...+.+. ...+++.+|+.++.|++++.-.+..
T Consensus 271 p~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 271 PGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 111111 1111111 1247888999999999998776654
No 354
>KOG1547|consensus
Probab=97.81 E-value=0.00027 Score=67.02 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=83.2
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
..+.++|+|||.+|.|||||+|.+|...-......+... .+...+. .+......+.-++-+.++.++||||-.+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~-~p~pkT~-----eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSA-EPIPKTT-----EIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCccc-CcccceE-----EEEeeeeeeeecceEEEEEEecCCCccc
Confidence 356789999999999999999998554332211111111 1111111 1233345566678889999999999421
Q ss_pred c---chhh-----------hhcc--------------cCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEE
Q psy3450 137 F---CTII-----------RSYS--------------RGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGN 187 (432)
Q Consensus 137 ~---~~l~-----------~~~~--------------~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgN 187 (432)
+ ..-| .+|+ ...+++++....+- .++.-+ .++++.+-+. +.+|-|.-
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIa 192 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIA 192 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEe
Confidence 1 1111 1222 23577777776553 334433 3344443333 56777788
Q ss_pred CccCC--CCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 188 RLHLA--FNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 188 K~DL~--~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
|+|-. ++|..-.+.+++-...+++.++.--+
T Consensus 193 kaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~ 225 (336)
T KOG1547|consen 193 KADTLTLEERSAFKQRIRKELEKHGIDVYPQDS 225 (336)
T ss_pred ecccccHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99952 22332233344444566776655433
No 355
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.80 E-value=1.1e-05 Score=55.34 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=33.1
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (432)
+|-|||.+|+.+|..+.....|++||||..||..|.
T Consensus 2 ~v~sLQhLCR~~Ir~~~~~~~i~~LpLP~~Lk~YL~ 37 (40)
T cd03746 2 QVASLQHLCRMAIRRVMPTQQVKELPIPSKLLEFLT 37 (40)
T ss_pred CCcCHHHHHHHHHHHHccccccccCCCCHHHHHHHh
Confidence 478999999999999988889999999999998875
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00017 Score=70.61 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH--HH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT--RE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~--ee 201 (432)
+.+.|+.|.|.-.-.. ....-+|.+++|.=..-.+..+-++.=+.++. =|+|.||.|.......-. ..
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia-------Di~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA-------DIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh-------heeeEeccChhhHHHHHHHHHH
Confidence 4567888877432211 23356888888875444444444443333332 378899999643211101 11
Q ss_pred HHHHHH------hcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 202 AEMYAI------KNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 202 ~~~~a~------~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+..+.. .+..+.+.+||.+|+|++++++.+.+.....
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 111221 1235899999999999999999998876443
No 357
>KOG0095|consensus
Probab=97.76 E-value=2.5e-05 Score=68.55 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=49.2
Q ss_pred cccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCccc
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSD 70 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~g 70 (432)
|.+|++|||++++|+.|+||++++.|+.. +-|.|-...+.+.++.+|-+-+|...
T Consensus 1 medykflfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gek 55 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEK 55 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeE
Confidence 56799999999999999999999999998 77888888899999999999888544
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.74 E-value=0.00013 Score=72.16 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=62.3
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
....++.+|++|+|+|+.++.+.++ .++.++. .+.|+++|.||+|+.+... .+...++.++.+.+++.+||++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~ 90 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKK 90 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCC
Confidence 3456789999999999988755432 2233222 2579999999999953211 1122222334467789999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy3450 221 DFNIRESFTELSRRALQ 237 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~ 237 (432)
+.|++++.+.+...+..
T Consensus 91 ~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 91 GQGVKKILKAAKKLLKE 107 (287)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999998877644
No 359
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=97.73 E-value=1.8e-05 Score=54.54 Aligned_cols=35 Identities=40% Similarity=0.457 Sum_probs=29.2
Q ss_pred hhhHhhhhhhhhhcccceee---ccCCCChHHHHHhhh
Q psy3450 316 VISLQELCCRAIVARTTVYA---INQLPLPNLIKSHLK 350 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 350 (432)
|-|||++|+.+|..+..... |++||||..|+..|+
T Consensus 1 p~sLq~LCR~~Ir~~l~~~~~~~i~~LpLP~~L~~yL~ 38 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGKKGLERIDKLPLPPRLKDYLL 38 (40)
T ss_dssp ---HHHHHHHHHHHHSSCCHGGGGGGSSS-HHHHHHHC
T ss_pred CccHHHHHHHHHHHHhChhhccccccCCCCHHHHHHHc
Confidence 45899999999999998887 999999999999987
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.72 E-value=9.8e-05 Score=65.73 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
...+++++|.+|+|||||+|++
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l 121 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINAL 121 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999998
No 361
>KOG0080|consensus
Probab=97.72 E-value=2.7e-05 Score=69.27 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=46.6
Q ss_pred ccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
+.+++.|||++||++||||++++.||.+ ..|.+....+.+.|+.+|++-|+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vd 56 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVD 56 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEc
Confidence 5688999999999999999999999998 78888888889999999999888
No 362
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.71 E-value=1.7e-05 Score=54.96 Aligned_cols=37 Identities=38% Similarity=0.425 Sum_probs=32.6
Q ss_pred hhhhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhhh
Q psy3450 315 SVISLQELCCRAIVART---TVYAINQLPLPNLIKSHLKS 351 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 351 (432)
++-|||++||.+|.... ....|++||||..||..|+.
T Consensus 1 ~p~sLq~LCR~~Ir~~lg~~~~~~i~~LpLP~~Lk~yL~~ 40 (41)
T cd03587 1 NPRSLQHLCRLAIRRCLGKRRLDLIDKLPLPPRLKDYLLY 40 (41)
T ss_pred CCcCHHHHHHHHHHHHHCcccccccccCCCCHHHHHHHcc
Confidence 35799999999999997 57899999999999998864
No 363
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=0.00019 Score=70.73 Aligned_cols=136 Identities=19% Similarity=0.168 Sum_probs=84.9
Q ss_pred hhhhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcC
Q psy3450 140 IIRSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSA 218 (432)
+.+.-..+.|-.|+|+.+.+|+ +..-+.+++-.+.. .++..+||.||+||.++.....++........+.+.+.+|+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA 149 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence 3334445678888888888875 34444655544443 45777888999999764433334555667778999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhccccccc-ccCCCceeEEEE
Q psy3450 219 LCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLW-RSNKGKHLLTYF 290 (432)
Q Consensus 219 ktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~-~~~~Gk~~~~y~ 290 (432)
+++.+++++.+.+...+ .-+..+..+++..+.+.-..... .....+- +..+|||++++.
T Consensus 150 ~~~~~~~~l~~~l~~~~------svl~GqSGVGKSSLiN~L~p~~~-------~~t~eIS~~~~rGkHTTt~~ 209 (301)
T COG1162 150 KNGDGLEELAELLAGKI------TVLLGQSGVGKSTLINALLPELN-------QKTGEISEKLGRGRHTTTHV 209 (301)
T ss_pred cCcccHHHHHHHhcCCe------EEEECCCCCcHHHHHHhhCchhh-------hhhhhhcccCCCCCCccceE
Confidence 99999999998887654 33334444555544433211100 0011111 235899998885
No 364
>PRK01889 GTPase RsgA; Reviewed
Probab=97.69 E-value=0.00017 Score=73.44 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=59.6
Q ss_pred ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHH-hcCCcEEEEcCCCCCC
Q psy3450 145 SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFN 223 (432)
Q Consensus 145 ~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-~~~~~~~evSAktg~n 223 (432)
..++|.+++|+++...-+...+++++..+... ++|.+||.||+||.++.. +....+.. ..+.+++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCcc
Confidence 57899999999997554455567776666554 578899999999965311 11222222 3467999999999999
Q ss_pred HHHHHHHHH
Q psy3450 224 IRESFTELS 232 (432)
Q Consensus 224 I~elf~~L~ 232 (432)
++++..++.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999888874
No 365
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.69 E-value=2.1e-05 Score=53.70 Aligned_cols=36 Identities=36% Similarity=0.488 Sum_probs=32.8
Q ss_pred hhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhh
Q psy3450 315 SVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (432)
+|-|||.+|+.+|..+...-.|++||||..||..|.
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~~~i~~LpLP~~Lk~YL~ 37 (39)
T cd03733 2 VVSSLQHLCRMALRRVMTTQQVLALPIPKKMKEFLT 37 (39)
T ss_pred CCCCHHHHHHHHHHHHccccccccCCCCHHHHHHHc
Confidence 468999999999999987788999999999998875
No 366
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.66 E-value=0.00024 Score=82.75 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc------
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG------ 135 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e------ 135 (432)
=.+|||++|+||||+|++- +-.|+- ..........++|.++ ..++. +.++ ..++||+|..
T Consensus 113 WYlviG~~gsGKtt~l~~s--gl~~pl---~~~~~~~~~~~~~~t~-~c~ww-----f~~~---avliDtaG~y~~~~~~ 178 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS--GLKFPL---AERLGAAALRGVGGTR-NCDWW-----FTDE---AVLIDTAGRYTTQDSD 178 (1169)
T ss_pred CEEEECCCCCchhHHHHhC--CCCCcC---chhhccccccCCCCCc-ccceE-----ecCC---EEEEcCCCccccCCCc
Confidence 5799999999999999973 334432 1111111122232111 12222 2232 3689999932
Q ss_pred --ccchhhhhcc---------cCceEEEEEEeCCCCCC--h-------hhHHHHHHHHHhhC-CCCcEEEEEECccCCC
Q psy3450 136 --RFCTIIRSYS---------RGAQGILLVYDITNKWS--F-------DGIDRWLKEVEEHA-PGVPKVLVGNRLHLAF 193 (432)
Q Consensus 136 --~~~~l~~~~~---------~~ad~iIlV~Dvt~~~S--f-------~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~ 193 (432)
.....|..++ +-.|+||+++|+.+--. - ..++..+.++.+.. -.+||.||.+|+|+..
T Consensus 179 ~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 2223344443 44799999999876422 1 13344555555443 5799999999999853
No 367
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.66 E-value=0.00011 Score=66.58 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
...++++++|.+|||||||+|++
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l 135 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRL 135 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34579999999999999999998
No 368
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00046 Score=67.27 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=85.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc--C----CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL--E----SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~--~----~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
.+-.+|..+|.-+-|||||...+.. . ..+..+............++ ......+.++-.+-.+-.+|.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGI-------TIntahveyet~~rhyahVDc 82 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGI-------TINTAHVEYETANRHYAHVDC 82 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCc-------eeccceeEEecCCceEEeccC
Confidence 3457999999999999999887611 1 11111000111111111122 233333334333445688999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCcccC---HHHHHHHHH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTVT---TREAEMYAI 207 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v~---~ee~~~~a~ 207 (432)
||+.+|-...-.-....|+.|||+.++|..--+. ++-+...++. ++| ++++.||+|+.++++.. ..+..++..
T Consensus 83 PGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 9998874322222346899999999988532222 2222222222 354 56778999998754432 335667777
Q ss_pred hcCC-----cEEEEcCCC
Q psy3450 208 KNQM-----AFFEVSPLC 220 (432)
Q Consensus 208 ~~~~-----~~~evSAkt 220 (432)
++++ |++.-||+.
T Consensus 160 ~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 160 EYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HcCCCCCCcceeechhhh
Confidence 7764 577667653
No 369
>KOG3887|consensus
Probab=97.55 E-value=0.00047 Score=65.47 Aligned_cols=159 Identities=22% Similarity=0.323 Sum_probs=88.1
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc-h
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC-T 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~-~ 139 (432)
-+|+++|-..+||||+-+-.|..-. |...+. .+++..++. + .+.+.-+.+++||.|||-.+- .
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlf--lESTski~~----d---------~is~sfinf~v~dfPGQ~~~Fd~ 91 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLF--LESTSKITR----D---------HISNSFINFQVWDFPGQMDFFDP 91 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeE--eeccCcccH----h---------hhhhhhcceEEeecCCccccCCC
Confidence 4599999999999998775422111 100000 000000010 0 112345779999999996542 2
Q ss_pred h--hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHh---hCCCCcEEEEEECccCCC-C------cccCHHHHHHHHH
Q psy3450 140 I--IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE---HAPGVPKVLVGNRLHLAF-N------RTVTTREAEMYAI 207 (432)
Q Consensus 140 l--~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~---~~~~iPiILVgNK~DL~~-~------r~v~~ee~~~~a~ 207 (432)
. ....++++.+.|+|.|.-+.- .+.+.++...+.. .++++.+=+...|.|-.. + |.+-.....+++.
T Consensus 92 s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d 170 (347)
T KOG3887|consen 92 SFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELAD 170 (347)
T ss_pred ccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHh
Confidence 1 234578999999999976531 2223333333332 337888889999999532 2 1111111222222
Q ss_pred h----cCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 208 K----NQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 208 ~----~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
. ....|.-+|- ....|-|.|..+++.+..
T Consensus 171 ~gle~v~vsf~LTSI-yDHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 171 AGLEKVQVSFYLTSI-YDHSIFEAFSKVVQKLIP 203 (347)
T ss_pred hhhccceEEEEEeee-cchHHHHHHHHHHHHHhh
Confidence 1 2235666655 456788888888877743
No 370
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.52 E-value=5.8e-05 Score=51.43 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=31.8
Q ss_pred hhhHhhhhhhhhhcccceeeccCCCChHHHHHhhh
Q psy3450 316 VISLQELCCRAIVARTTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (432)
|-|||-+|+.+|..+.....++.||||..||..|+
T Consensus 3 v~SLQHLCR~~I~~~~~~~~~~~LPLP~~Lk~yL~ 37 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTYQVLALPIPKKMKEFLT 37 (39)
T ss_pred cccHHHHHHHHHHHhccccccccCCCcHHHHHHHc
Confidence 57999999999999987778999999999998876
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.51 E-value=0.00016 Score=66.73 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEeCcccchhHHHHHhhhc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYL 82 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~ 82 (432)
..++++|.+|||||||+|.|+.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999843
No 372
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.49 E-value=0.00019 Score=65.65 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~ 81 (432)
...++++++|.+|||||||+|++.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~ 138 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLK 138 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHh
Confidence 445899999999999999999983
No 373
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.49 E-value=0.00039 Score=68.71 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.0
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
...++++++|.+|||||||+|++
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l 141 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRL 141 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHH
Confidence 34689999999999999999998
No 374
>KOG1487|consensus
Probab=97.45 E-value=0.0011 Score=63.71 Aligned_cols=147 Identities=22% Similarity=0.211 Sum_probs=84.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECC----eEEEEEEEeCCCCcc
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG----KRVKLQLWDTSGQGR 136 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~----~~v~l~i~Dt~G~e~ 136 (432)
-||-++|-|.||||||+..+ .... ++... -+.++-+.+.| +.-++++.|.||.-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l----------~g~~-----s~vas------yefttl~~vpG~~~y~gaKiqlldlpgiie 118 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKL----------TGTF-----SEVAA------YEFTTLTTVPGVIRYKGAKIQLLDLPGIIE 118 (358)
T ss_pred eeeeEEecCccchhhhhhhh----------cCCC-----Ccccc------ccceeEEEecceEeccccceeeecCcchhc
Confidence 47889999999999999986 1111 11110 11112222222 124679999999643
Q ss_pred cch----h---hhhcccCceEEEEEEeCCCCCChhhH-HHHHHH------------------------------------
Q psy3450 137 FCT----I---IRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE------------------------------------ 172 (432)
Q Consensus 137 ~~~----l---~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~------------------------------------ 172 (432)
-.. - .-...+.++.+++|.|+-.+-+...+ ++-++-
T Consensus 119 gakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rs 198 (358)
T KOG1487|consen 119 GAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRS 198 (358)
T ss_pred ccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHH
Confidence 211 1 11345789999999999776554433 111111
Q ss_pred ----HHhhC----------------------CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 173 ----VEEHA----------------------PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 173 ----i~~~~----------------------~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
.+.+. .-+|.+.+.||+|-. +.||..-. ......+.+||-++.|+++
T Consensus 199 il~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsI-----SiEELdii--~~iphavpISA~~~wn~d~ 271 (358)
T KOG1487|consen 199 ILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSI-----SIEELDII--YTIPHAVPISAHTGWNFDK 271 (358)
T ss_pred HHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeeccccee-----eeecccee--eeccceeecccccccchHH
Confidence 11100 025777788888752 22221100 0123578899999999999
Q ss_pred HHHHHHHHH
Q psy3450 227 SFTELSRRA 235 (432)
Q Consensus 227 lf~~L~~~i 235 (432)
+++.+-+.+
T Consensus 272 lL~~mweyL 280 (358)
T KOG1487|consen 272 LLEKMWEYL 280 (358)
T ss_pred HHHHHhhcc
Confidence 999887765
No 375
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.45 E-value=0.00026 Score=63.27 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
.++|+++|.+|||||||+|++
T Consensus 102 ~~~v~~~G~~nvGKStliN~l 122 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTL 122 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHH
Confidence 468999999999999999998
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.44 E-value=0.00039 Score=68.26 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.6
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
..++++++|.+|||||||+|++
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l 138 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRL 138 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999998
No 377
>KOG4273|consensus
Probab=97.39 E-value=0.0012 Score=62.88 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=90.0
Q ss_pred EEEEeCcccc--hhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe----EEEEEEEeCCCCc
Q psy3450 62 KFLLVGDSDV--GKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK----RVKLQLWDTSGQG 135 (432)
Q Consensus 62 KVvvvG~~gv--GKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~----~v~l~i~Dt~G~e 135 (432)
-++|+|-+|| ||-+|+.+| ....|......... ..++.. +++.+ .+.+.|.-.. +
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl-~s~dfed~ses~~~--------------te~hgw--tid~kyysadi~lcishic--d 66 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRL-GSEDFEDESESNDA--------------TEFHGW--TIDNKYYSADINLCISHIC--D 66 (418)
T ss_pred eEEEecccccccchHHHHHHh-cchhheeeccccCc--------------eeeece--EecceeeecceeEEeeccc--c
Confidence 4689999999 999999997 54444322111111 122211 12222 2222322221 1
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC------------------cc-
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN------------------RT- 196 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~------------------r~- 196 (432)
++.-.......-..++++|||++....++.++.|+....-..-+ -.+.+|||.|.... |.
T Consensus 67 e~~lpn~~~a~pl~a~vmvfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl 145 (418)
T KOG4273|consen 67 EKFLPNAEIAEPLQAFVMVFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDL 145 (418)
T ss_pred hhccCCcccccceeeEEEEEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhH
Confidence 11111112234567999999999999999999998754332212 24678999996321 00
Q ss_pred -------------------------cCHHHHHHHHHhcCCcEEEEcCCC------------CCCHHHHHHHHHHHH
Q psy3450 197 -------------------------VTTREAEMYAIKNQMAFFEVSPLC------------DFNIRESFTELSRRA 235 (432)
Q Consensus 197 -------------------------v~~ee~~~~a~~~~~~~~evSAkt------------g~nI~elf~~L~~~i 235 (432)
.....+.+|+.++++.++|.+|.. ..||+.+|..|-..+
T Consensus 146 ~~di~dfgisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 146 MIDICDFGISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred hhhhhhccccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 112235678888899999998843 247888888776554
No 378
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.38 E-value=0.0018 Score=65.38 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=64.0
Q ss_pred EEEEeCCCCcccch--hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc--cCHHH
Q psy3450 126 LQLWDTSGQGRFCT--IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--VTTRE 201 (432)
Q Consensus 126 l~i~Dt~G~e~~~~--l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--v~~ee 201 (432)
+.|+||.|+|.|-. ++-.+-++.|-.+|++.+++.-+--. ++-+-.+.. -+.|+++|.+|+|+.++.. -..++
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a--~~lPviVvvTK~D~~~ddr~~~v~~e 279 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA--MELPVIVVVTKIDMVPDDRFQGVVEE 279 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh--hcCCEEEEEEecccCcHHHHHHHHHH
Confidence 67899999998743 22334478999999999887643211 222221111 3589999999999964311 01111
Q ss_pred HHHH----------------------HHhcC---CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 202 AEMY----------------------AIKNQ---MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 202 ~~~~----------------------a~~~~---~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+.++ +-+.+ .|+|.+|+-+|+|++-+ +++...+
T Consensus 280 i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~L 337 (527)
T COG5258 280 ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLL 337 (527)
T ss_pred HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhC
Confidence 1111 11112 48999999999998544 4444333
No 379
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.38 E-value=7.6e-05 Score=51.69 Aligned_cols=37 Identities=43% Similarity=0.717 Sum_probs=30.1
Q ss_pred hhhhHhhhhhhhhhccccee-eccCCCChHHHHHhhhhhh
Q psy3450 315 SVISLQELCCRAIVARTTVY-AINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 353 (432)
+|-|||-||+.+|..+++.+ .++.||+| ||..|+.|-
T Consensus 2 ~v~SLQHLCR~~In~~~~~~~~~~~LP~~--Lk~yL~~Y~ 39 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSYEKRTQLPLP--IKEFLDQYD 39 (42)
T ss_pred CcccHHHHHHHHHHHhcCcccchhhccHH--HHHHHHhCC
Confidence 46899999999999998765 47777776 888888773
No 380
>KOG0078|consensus
Probab=97.37 E-value=0.00015 Score=67.38 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=46.7
Q ss_pred cccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCc
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGD 68 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~ 68 (432)
.+|+++|++++||+++|||+++.|+.+ +.|...+..+.+.++.+|.+.+..
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDG 58 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCC
Confidence 789999999999999999999999999 888888888999999999877763
No 381
>KOG1143|consensus
Probab=97.36 E-value=0.0016 Score=65.34 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=64.8
Q ss_pred EEEEEeCCCCcccchhhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC--------
Q psy3450 125 KLQLWDTSGQGRFCTIIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN-------- 194 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~-------- 194 (432)
-+.|+|.+|..+|....-.-+. ..|..++|+++...-.+.. ++-+..+... ++|+.++.+|+|+.+.
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHH
Confidence 3689999999988654333221 3577888888776543321 3334444443 5999999999999653
Q ss_pred ----------------cccCHHHHHHHHHhc---C-CcEEEEcCCCCCCHHHHHHH
Q psy3450 195 ----------------RTVTTREAEMYAIKN---Q-MAFFEVSPLCDFNIRESFTE 230 (432)
Q Consensus 195 ----------------r~v~~ee~~~~a~~~---~-~~~~evSAktg~nI~elf~~ 230 (432)
+..+.+++..-+++. + .|+|.+|+.+|++++-+-..
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 112233443333332 2 48999999999998654433
No 382
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.34 E-value=0.0018 Score=66.67 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=78.9
Q ss_pred EEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCC----------hhhHHHHHHHHHhhC--CCCc
Q psy3450 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS----------FDGIDRWLKEVEEHA--PGVP 181 (432)
Q Consensus 114 ~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~S----------f~~l~~~l~~i~~~~--~~iP 181 (432)
...+.++ ....+.++|++|+..-+.-|..++.++++||||+++++-+- +.+....+..+-... .+.|
T Consensus 227 e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ 305 (389)
T PF00503_consen 227 EIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTP 305 (389)
T ss_dssp EEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSE
T ss_pred EEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCc
Confidence 3444441 23567999999998888889999999999999999874211 233333444443322 5799
Q ss_pred EEEEEECccCCC------C----------cc--cCHHHHHHHHHhc------------CCcEEEEcCCCCCCHHHHHHHH
Q psy3450 182 KVLVGNRLHLAF------N----------RT--VTTREAEMYAIKN------------QMAFFEVSPLCDFNIRESFTEL 231 (432)
Q Consensus 182 iILVgNK~DL~~------~----------r~--v~~ee~~~~a~~~------------~~~~~evSAktg~nI~elf~~L 231 (432)
+||+.||.|+-. . .. -..+.+..+.... .+-+..++|.+-.+++.+|+.+
T Consensus 306 iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v 385 (389)
T PF00503_consen 306 IILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAV 385 (389)
T ss_dssp EEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHH
T ss_pred eEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHh
Confidence 999999999721 0 11 2345555555431 1134578888888899998888
Q ss_pred HHHH
Q psy3450 232 SRRA 235 (432)
Q Consensus 232 ~~~i 235 (432)
.+.|
T Consensus 386 ~~~i 389 (389)
T PF00503_consen 386 KDII 389 (389)
T ss_dssp HHHH
T ss_pred cCcC
Confidence 7643
No 383
>KOG0447|consensus
Probab=97.32 E-value=0.0046 Score=64.79 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=92.0
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccc--cCCCccc-----c--------------------
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFC--SGSGKYD-----D-------------------- 108 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~--~~ig~~~-----~-------------------- 108 (432)
..++..+|+|||+..+||||.+..+....-||.-.-.--+..+.. ...|.|. +
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 346788999999999999999998744444443221111111111 1112110 0
Q ss_pred ------------ccceeEEEEEECCeE-EEEEEEeCCCC-------------cccchhhhhcccCceEEEEEEeCCCCCC
Q psy3450 109 ------------MLAYKTTTILLDGKR-VKLQLWDTSGQ-------------GRFCTIIRSYSRGAQGILLVYDITNKWS 162 (432)
Q Consensus 109 ------------tid~~~~~i~i~~~~-v~l~i~Dt~G~-------------e~~~~l~~~~~~~ad~iIlV~Dvt~~~S 162 (432)
|+......+.+.|.. -+..++|.||. +....+...|+.+.++||+|.--.+-+.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 122222233444432 35678999984 2344567789999999999974222211
Q ss_pred h-hhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC-----CcEEEEcC
Q psy3450 163 F-DGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-----MAFFEVSP 218 (432)
Q Consensus 163 f-~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~-----~~~~evSA 218 (432)
- ..+..+...+.- .+.-.|+|.+|.|+.++.-.+...++++....- ..||.+-.
T Consensus 464 ERSnVTDLVsq~DP--~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVT 523 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP--HGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVT 523 (980)
T ss_pred hhhhHHHHHHhcCC--CCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEe
Confidence 1 122222222221 256789999999998877777777777665321 25666543
No 384
>KOG0448|consensus
Probab=97.31 E-value=0.002 Score=69.07 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=45.4
Q ss_pred EEEEEeCCCCc---ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC
Q psy3450 125 KLQLWDTSGQG---RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN 194 (432)
Q Consensus 125 ~l~i~Dt~G~e---~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~ 194 (432)
.+.+.|.||.+ +...-...+..++|++|||....+.....+ +.++....+. +..|.|+.||||....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 35778999964 444555677889999999998766544333 4444444443 3567788999998643
No 385
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.23 E-value=0.00093 Score=68.02 Aligned_cols=84 Identities=13% Similarity=-0.050 Sum_probs=50.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCC-CcccccCCCCcCccccCCCccccccceeEEEEEECCe---------------EE
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESR-FPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK---------------RV 124 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~-~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~---------------~v 124 (432)
+|+.|+|.||+|||||+|.+..... -..+| +. +|++.....+.+.+. ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y--pf-------------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a 67 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP--PF-------------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPT 67 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC--CC-------------CCCCCceeEEEechhHHHHHHHHhCCcCcCCc
Confidence 6899999999999999999822221 11111 11 111222223333321 23
Q ss_pred EEEEEeCCCCccc----chhhh---hcccCceEEEEEEeCCC
Q psy3450 125 KLQLWDTSGQGRF----CTIIR---SYSRGAQGILLVYDITN 159 (432)
Q Consensus 125 ~l~i~Dt~G~e~~----~~l~~---~~~~~ad~iIlV~Dvt~ 159 (432)
.+++.|.||.-.- ..+.+ ..++.+|++++|+|..+
T Consensus 68 ~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 68 TTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred eEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 5789999996432 22223 34689999999999854
No 386
>KOG0081|consensus
Probab=97.19 E-value=8.2e-05 Score=66.06 Aligned_cols=59 Identities=32% Similarity=0.490 Sum_probs=49.5
Q ss_pred cccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEe---CcccchhH
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLV---GDSDVGKQ 74 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvv---G~~gvGKS 74 (432)
+.+||||+|++.+||+|+||++++.+|.+ ..|.++.-.+.+.++.-|=++- |+.|+|+-
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~ 64 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRG 64 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcc
Confidence 56899999999999999999999999998 7787777788888887766654 66667764
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0086 Score=53.87 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=78.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCC-CCc--
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTS-GQG-- 135 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~-G~e-- 135 (432)
..+||.+-|+||||||||+.++ .+.-.... -.+| -+....+.-+|+.+=+.+.|.. |.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki----------~e~L~~~g--~kvg------Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~ 65 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKI----------AEKLREKG--YKVG------GFITPEVREGGKRIGFKIVDLATGEEGI 65 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHH----------HHHHHhcC--ceee------eEEeeeeecCCeEeeeEEEEccCCceEE
Confidence 3579999999999999999987 11000000 1122 4566666777888888888877 321
Q ss_pred ------------cc-------c----hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccC
Q psy3450 136 ------------RF-------C----TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHL 191 (432)
Q Consensus 136 ------------~~-------~----~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL 191 (432)
+| . ......++.||++|+ |=--+--|. .+++.+.+.+.. .+.|+|.+..+.+.
T Consensus 66 la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 66 LARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred EEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 01 0 011223355676654 322221111 144444444433 45788877776552
Q ss_pred CCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 192 AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 192 ~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
....+ -.+..+.-++. .+-.|=+.++..+...+
T Consensus 143 ----~P~v~----~ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 143 ----HPLVQ----RIKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred ----ChHHH----HhhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 11112 22333433333 46667778888888766
No 388
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.13 E-value=0.0017 Score=58.38 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCCcccchhhhh--------cccCceEEEEEEeCCCCCCh-hhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRS--------YSRGAQGILLVYDITNKWSF-DGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~--------~~~~ad~iIlV~Dvt~~~Sf-~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
..+..++||+|..+-..+... ..-..|.++.++|..+.... ++...+..++... =+||.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence 456789999998643333322 22357899999997653221 1113344444432 2668999996
No 389
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.12 E-value=0.002 Score=64.58 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=57.8
Q ss_pred eEEEEEEEeCCCCcccchh----hhhc--------ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 122 KRVKLQLWDTSGQGRFCTI----IRSY--------SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l----~~~~--------~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
..+.+.|+||+|....... ...+ -...+..++|.|++.. .+.+.. ...+.+.. -+.-+|.||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~--~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV--GLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC--CCCEEEEECC
Confidence 3467899999997432111 1111 1246778999998853 333332 22222211 2446889999
Q ss_pred cCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHH
Q psy3450 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228 (432)
Q Consensus 190 DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf 228 (432)
|.... .-.+...+...+.|+..++ +|++++++-
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95422 2345556677789998888 788887764
No 390
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.12 E-value=0.001 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.2
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
...+++++|.+|||||||+|.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l 120 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINAL 120 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHH
Confidence 4578999999999999999998
No 391
>KOG0466|consensus
Probab=97.10 E-value=0.00039 Score=67.95 Aligned_cols=107 Identities=9% Similarity=0.160 Sum_probs=68.4
Q ss_pred EEEEEeCCCCcccch-hhhhcccCceEEEEEEeCCC----CCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--
Q psy3450 125 KLQLWDTSGQGRFCT-IIRSYSRGAQGILLVYDITN----KWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV-- 197 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~-l~~~~~~~ad~iIlV~Dvt~----~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v-- 197 (432)
.+.|+|.||++-... |.+. ..-.|+.+|+...+. +++-+++.. -++.+. ..++++-||+||..+.+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnG-aAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L---khiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNG-AAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL---KHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEeccCCchHHHHHHHhcc-hHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh---ceEEEEechhhhhhHHHHHH
Confidence 467899999875432 2221 122477777776554 333333321 122222 358999999999754432
Q ss_pred CHHHHHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 198 TTREAEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 198 ~~ee~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..+++..|.+.- +++++.+||.-++||+-+.+++++.+-.
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 233455555543 5799999999999999999999998843
No 392
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.06 E-value=0.00052 Score=61.98 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEeCcccchhHHHHHhhhcC
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLE 83 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~ 83 (432)
-++++|.+|||||||+|.|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998443
No 393
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.05 E-value=0.0048 Score=60.55 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred EEEEEEEeCCCCcccchhh----hh--------cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 123 RVKLQLWDTSGQGRFCTII----RS--------YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~----~~--------~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
.+.+.|+||+|........ .. .-...|.+++|.|++.. .+.+. +...+.+.. -+--+|.||.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlD 228 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLD 228 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccC
Confidence 4678999999975432211 11 11247899999999743 33332 333333322 14568899999
Q ss_pred CCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHH
Q psy3450 191 LAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230 (432)
Q Consensus 191 L~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~ 230 (432)
.... .-.+..++...+.|+..++ +|.+++++-..
T Consensus 229 e~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 229 GTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 7432 2344555667788888888 78888776443
No 394
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.04 E-value=0.0018 Score=47.97 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=31.7
Q ss_pred CceEEEEEEeCCCCC--ChhhHHHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 147 GAQGILLVYDITNKW--SFDGIDRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 147 ~ad~iIlV~Dvt~~~--Sf~~l~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
-.+++++++|++... +.++...++++++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 368999999998754 55666778899999988999999999998
No 395
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.04 E-value=0.00098 Score=66.99 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.7
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
.+++.|+|-||||||||||+|
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L 152 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRL 152 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHH
Confidence 478999999999999999998
No 396
>KOG0092|consensus
Probab=97.03 E-value=0.0015 Score=59.95 Aligned_cols=139 Identities=14% Similarity=0.253 Sum_probs=90.3
Q ss_pred ceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCC
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGS 94 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~ 94 (432)
.-+|++++|+.++||++|+.||.. +.|.+...++.+..+..|.+-+++..+ . | +.|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~i------k-f-------eIW---- 59 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTI------K-F-------EIW---- 59 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEE------E-E-------EEE----
Confidence 457999999999999999999998 888888899999999999999987611 1 1 000
Q ss_pred CcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcc-----cCceEEEEE----EeCCC--CCCh
Q psy3450 95 SESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYS-----RGAQGILLV----YDITN--KWSF 163 (432)
Q Consensus 95 ~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~-----~~ad~iIlV----~Dvt~--~~Sf 163 (432)
.+.+.+. ......+++.|-..-|.++|..-.+.|...-...- ..-|++|.+ .|+.+ .-.+
T Consensus 60 ----DTAGQER-----y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~ 130 (200)
T KOG0092|consen 60 ----DTAGQER-----YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEF 130 (200)
T ss_pred ----EcCCccc-----ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccH
Confidence 1112210 11123456778888899999998877755433221 124555544 35555 3455
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 164 DGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 164 ~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
++.+.+.+. .+.+.+-.-.|...
T Consensus 131 ~ea~~yAe~-----~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 131 EEAQAYAES-----QGLLFFETSAKTGE 153 (200)
T ss_pred HHHHHHHHh-----cCCEEEEEeccccc
Confidence 555554443 34566666667653
No 397
>PRK12288 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.001 Score=67.60 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=17.7
Q ss_pred EEEeCcccchhHHHHHhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~ 81 (432)
++++|.+|||||||||+|.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALL 226 (347)
T ss_pred EEEECCCCCCHHHHHHHhc
Confidence 7899999999999999983
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0053 Score=65.19 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCCcccchhhhh---ccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRS---YSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~---~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
.+.+.|+||+|.......... .+. .....++|++.+. +..++...+..+... .+.-+|.||+|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~---~~~gvILTKlDEt~---- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA---KPQGVVLTKLDETG---- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh---CCeEEEEecCcCcc----
Confidence 467899999996432211000 010 1234567777653 355555555555443 36779999999632
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNI 224 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI 224 (432)
..-.+...+...+.++..++ +|.+|
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 34566677777788877776 56666
No 399
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=97.02 E-value=0.0003 Score=48.81 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=27.1
Q ss_pred hhHhhhhhhhhhcccce----eeccCCCChHHHHHhh
Q psy3450 317 ISLQELCCRAIVARTTV----YAINQLPLPNLIKSHL 349 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 349 (432)
-+||++|+++|-.-... .+|++||||.+||..|
T Consensus 4 ~~Lq~LcR~aiR~~lg~~~l~~aI~~LpLP~sLK~YL 40 (43)
T cd03727 4 GTLKALARYAVRRSLGVQYLPEAVKQLPLPRSVKEYL 40 (43)
T ss_pred cCHHHHHHHHHHHHHhhhhHHhhcccCCCCHHHHHHH
Confidence 47999999998765533 3899999999999876
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.00 E-value=0.003 Score=65.64 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCCcccch-hhh---hc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCT-IIR---SY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~-l~~---~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
.+.+.|+||+|...... +.. .+ ..+.+-++||.|++-...- ......+.+.. .+--+|.||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~--~~~g~IlTKlD~~ar-- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV--DVGSVIITKLDGHAK-- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc--CCcEEEEECccCCCC--
Confidence 46789999999653321 111 11 2356889999998654222 22333333321 256788999997421
Q ss_pred cCHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 197 VTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
.-.+...+...+.|+..++ +|++++++
T Consensus 255 --gG~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 255 --GGGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred --ccHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 1223445556677776665 56666655
No 401
>KOG0463|consensus
Probab=96.98 E-value=0.0062 Score=61.25 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=55.3
Q ss_pred EEEEEeCCCCcccchhhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHH
Q psy3450 125 KLQLWDTSGQGRFCTIIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREA 202 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~ 202 (432)
.+.|+|.+|+|+|-...-.-+ .-.|..++++-.+-.- .-..++.+-.... -.+|+.+|.+|+|..... +..|..
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa--L~VPVfvVVTKIDMCPAN-iLqEtm 295 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA--LHVPVFVVVTKIDMCPAN-ILQETM 295 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh--hcCcEEEEEEeeccCcHH-HHHHHH
Confidence 378999999998855322211 2235555555433210 0111222222222 248999999999985422 222222
Q ss_pred H---HHHHh--------------------------cCCcEEEEcCCCCCCHHHHHHH
Q psy3450 203 E---MYAIK--------------------------NQMAFFEVSPLCDFNIRESFTE 230 (432)
Q Consensus 203 ~---~~a~~--------------------------~~~~~~evSAktg~nI~elf~~ 230 (432)
. ++.+. .-|++|.+|..+|.|++-+...
T Consensus 296 Kll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 296 KLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 2 22222 1267999999999998644433
No 402
>PRK13695 putative NTPase; Provisional
Probab=96.96 E-value=0.0085 Score=54.36 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=44.5
Q ss_pred hcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCC
Q psy3450 143 SYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220 (432)
Q Consensus 143 ~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt 220 (432)
..++++++ +++|=- ...+.. ..+.+.+.... .+.|+|++.+|... ...+.++....+..++++ +
T Consensus 92 ~~l~~~~~--lllDE~--~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~ 157 (174)
T PRK13695 92 RALEEADV--IIIDEI--GKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---T 157 (174)
T ss_pred hccCCCCE--EEEECC--CcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---c
Confidence 34556777 566721 111121 22333333322 45799999998543 122334444556778888 5
Q ss_pred CCCHHHHHHHHHHHH
Q psy3450 221 DFNIRESFTELSRRA 235 (432)
Q Consensus 221 g~nI~elf~~L~~~i 235 (432)
.+|=+++...+.+.+
T Consensus 158 ~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 PENRDSLPFEILNRL 172 (174)
T ss_pred chhhhhHHHHHHHHH
Confidence 567778888887765
No 403
>KOG0467|consensus
Probab=96.95 E-value=0.0024 Score=69.17 Aligned_cols=130 Identities=20% Similarity=0.212 Sum_probs=78.7
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
+....-+++++-.-.-|||||...|...+-.....+.+...--... ..+....|..+...|..-.+.+.++++|+||+-
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~r-edeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTR-EDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeecccc-chhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3445567899999999999999998443322111111111100000 000001123333344444466889999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECcc
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLH 190 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~D 190 (432)
+|.+......+-+|++++.+|+...-.-+.. ..+++.. .+...++|.||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhh
Confidence 9999998999999999999998765332221 1111111 3466899999999
No 404
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.95 E-value=0.00059 Score=47.46 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=29.3
Q ss_pred hhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVART---TVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 350 (432)
-|||++|+.+|..+. ....|++||||..||..|.
T Consensus 4 ~sLq~LCR~~Ir~~lg~~~~~~I~~LpLP~~Lk~yLl 40 (42)
T cd03718 4 LPLMDLCRRRVRVALGRDRLEEIEQLPLPPSLKNYLL 40 (42)
T ss_pred CCHHHHHHHHHHHHhCcccccccccCCCCHHHHHHHc
Confidence 589999999997766 3569999999999998875
No 405
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.92 E-value=0.0024 Score=60.81 Aligned_cols=90 Identities=18% Similarity=0.062 Sum_probs=48.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCC-CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLES-RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~-~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..-|.|+|++++|||+|+|+++... .|.... .. ... +.| +......+.. +....+.++||+|....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~---~~-~~~--T~g-----i~~~~~~~~~-~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD---TS-QQT--TKG-----IWMWSVPFKL-GKEHAVLLLDTEGTDGR 73 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC---CC-CCC--ccc-----eEEEeccccC-CCcceEEEEecCCcCcc
Confidence 34568899999999999999984431 443111 10 000 111 1222111111 23467899999997543
Q ss_pred ch------hhhhcccC--ceEEEEEEeCCCC
Q psy3450 138 CT------IIRSYSRG--AQGILLVYDITNK 160 (432)
Q Consensus 138 ~~------l~~~~~~~--ad~iIlV~Dvt~~ 160 (432)
.. ..-..+.. ++++|+..+....
T Consensus 74 ~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 74 ERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred ccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 22 11122223 7888887776543
No 406
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0059 Score=64.18 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=79.2
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
+..+++=|+|+|+||+|||||+..+ + .+|... ......| -...+.|+.-++.|..++ .
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSl-V-rr~tk~--------ti~~i~G----------PiTvvsgK~RRiTflEcp--~ 122 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSL-V-RRFTKQ--------TIDEIRG----------PITVVSGKTRRITFLECP--S 122 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHH-H-HHHHHh--------hhhccCC----------ceEEeecceeEEEEEeCh--H
Confidence 4456677889999999999999987 1 111110 0000011 111245677788999988 2
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhh-HHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHH-----h-
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDG-IDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----K- 208 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~-l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~- 208 (432)
....++ ...+-||.+||+.|.+-. |+- ..+++..+..+. -.-++-|.+..||-.. +-....+....+ +
T Consensus 123 Dl~~mi-DvaKIaDLVlLlIdgnfG--fEMETmEFLnil~~HG-mPrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEi 197 (1077)
T COG5192 123 DLHQMI-DVAKIADLVLLLIDGNFG--FEMETMEFLNILISHG-MPRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEI 197 (1077)
T ss_pred HHHHHH-hHHHhhheeEEEeccccC--ceehHHHHHHHHhhcC-CCceEEEEeecccccC-hHHHHHHHHHHhhhHHHHH
Confidence 333333 234668999999997643 332 134555444443 2346778999999543 222233322111 1
Q ss_pred -cCCcEEEEcCCC
Q psy3450 209 -NQMAFFEVSPLC 220 (432)
Q Consensus 209 -~~~~~~evSAkt 220 (432)
.|+.+|.+|-..
T Consensus 198 yqGaKlFylsgV~ 210 (1077)
T COG5192 198 YQGAKLFYLSGVE 210 (1077)
T ss_pred cCCceEEEecccc
Confidence 267888888753
No 407
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.83 E-value=0.0022 Score=61.97 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|.+|||||||+|++
T Consensus 122 ~~~~~G~sgvGKStLiN~L 140 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINAL 140 (245)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 408
>PRK12289 GTPase RsgA; Reviewed
Probab=96.83 E-value=0.0021 Score=65.30 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=17.8
Q ss_pred EEEeCcccchhHHHHHhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~ 81 (432)
++|+|.+|||||||||.|.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred EEEEeCCCCCHHHHHHHHc
Confidence 7999999999999999983
No 409
>KOG0394|consensus
Probab=96.80 E-value=0.00036 Score=63.58 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=92.8
Q ss_pred cceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCC
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDG 93 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~ 93 (432)
-.|+|++++||+|+||+++..+|.. ..|..++..+.+.++.-|=+.|. ||+-.++.| ...
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd----~~~vtlQiW----------DTA 66 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVD----DRSVTLQIW----------DTA 66 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEc----CeEEEEEEE----------ecc
Confidence 4689999999999999999999998 77778888899999988888877 555555554 111
Q ss_pred CCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh---hhhcccCc-----eEE--EEE---EeCCC-
Q psy3450 94 SSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI---IRSYSRGA-----QGI--LLV---YDITN- 159 (432)
Q Consensus 94 ~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l---~~~~~~~a-----d~i--IlV---~Dvt~- 159 (432)
..++- ..+| .-.+.|..+-+..+|..-.+.|..+ +..++..| +.+ |++ .|+.+
T Consensus 67 GQERF--qsLg-----------~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 67 GQERF--QSLG-----------VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred cHHHh--hhcc-----------cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 11111 1111 1123566777888898887766554 23344333 333 333 46644
Q ss_pred ---CCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 160 ---KWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 160 ---~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
..|....+.|...- .++|.+-.--|-+.
T Consensus 134 ~~r~VS~~~Aq~WC~s~----gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 134 KSRQVSEKKAQTWCKSK----GNIPYFETSAKEAT 164 (210)
T ss_pred ccceeeHHHHHHHHHhc----CCceeEEecccccc
Confidence 34666777786542 46888888878764
No 410
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.77 E-value=0.00078 Score=48.79 Aligned_cols=36 Identities=39% Similarity=0.438 Sum_probs=31.4
Q ss_pred hhhhHhhhhhhhhhccccee------eccCCCChHHHHHhhh
Q psy3450 315 SVISLQELCCRAIVARTTVY------AINQLPLPNLIKSHLK 350 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 350 (432)
+|-|||.+|+.+|..+.... .|++||||..|+..|.
T Consensus 2 ~~~sLqhLCRl~IR~~lg~~~l~~~~~i~~LpLP~~Lk~YL~ 43 (51)
T cd03722 2 SVPSLTHLCRLEIRSSLKSERLRSDSFICQLPLPRSLQDYLL 43 (51)
T ss_pred CCccHHHHHHHHHHHHcchhhcccccccccCCCCHHHHHHHh
Confidence 46899999999999998755 4899999999998875
No 411
>KOG1491|consensus
Probab=96.74 E-value=0.0034 Score=62.46 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=52.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE---------------CCeE
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL---------------DGKR 123 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i---------------~~~~ 123 (432)
..+|+-|||-||||||||+|.+....--+.++.. .||+...-.+.+ ....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF---------------~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vp 83 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF---------------CTIDPNEARVEVPDSRFDLLCPIYGPKSKVP 83 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc---------------ceeccccceeecCchHHHHHHHhcCCcceee
Confidence 4579999999999999999998332221221111 112222222222 1234
Q ss_pred EEEEEEeCCCCcc----cchhhhhc---ccCceEEEEEEeCCC
Q psy3450 124 VKLQLWDTSGQGR----FCTIIRSY---SRGAQGILLVYDITN 159 (432)
Q Consensus 124 v~l~i~Dt~G~e~----~~~l~~~~---~~~ad~iIlV~Dvt~ 159 (432)
..|+++|++|.-+ -..+-+.| +|.+|+++.|+++..
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 6789999998643 23344444 588999999988753
No 412
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.0055 Score=61.90 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=56.9
Q ss_pred EEEEEEeCCCCcccch-hh---hhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCT-II---RSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~-l~---~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
+.+.++||+|.-.... +. ..+. -..|.++||.|++... +.......+.... -.--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~--~~~giIlTKlD~~~~--- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV--GIDGVILTKVDADAK--- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC--CCCEEEEeeecCCCC---
Confidence 4589999999753211 11 1121 2578899999986542 2222223232211 134678899997432
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~ 230 (432)
.-.+...+...+.|+..++ +|.+++++...
T Consensus 295 -~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 -GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 2234455556788888887 79998877543
No 413
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.015 Score=59.62 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCCcccchhhhh---cc---cCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CC--C--cEEEEEECcc
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRS---YS---RGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PG--V--PKVLVGNRLH 190 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~---~~---~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~--i--PiILVgNK~D 190 (432)
...+.++||+|...+...... .+ ....-.+||.+.+.. .+.+...+..+.... +. . +-=+|.+|.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 346799999997543322111 12 223456889998764 233333333333321 10 0 2246779999
Q ss_pred CCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 191 LAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 191 L~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
-.. ..-.+..++...+.|+..++ +|.+|.+
T Consensus 293 Et~----~~G~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 293 EAS----NLGGVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred cCC----CccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 632 33456667777787776666 5665544
No 414
>KOG0093|consensus
Probab=96.65 E-value=0.0017 Score=57.19 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=47.2
Q ss_pred ccccccccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCc
Q psy3450 7 VATQKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGD 68 (432)
Q Consensus 7 ~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~ 68 (432)
-+..++.||++|++++||+.+||++++.||.. .+|.+..-.+.+.++..|-+.=++
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~ 67 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSD 67 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecc
Confidence 34566899999999999999999999999998 888887778888888777655554
No 415
>KOG0094|consensus
Probab=96.63 E-value=0.0018 Score=59.74 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=42.3
Q ss_pred cceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
-..+|++++||.+||||+|+.||.. +.|...+..+.+.|+..|-+.+-
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLE 67 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEc
Confidence 3458999999999999999999998 88888999999999988866654
No 416
>cd03730 SOCS_ASB14 SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.61 E-value=0.0013 Score=48.61 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=32.3
Q ss_pred hhhHhhhhhhhhhccccee------eccCCCChHHHHHhhhhhh
Q psy3450 316 VISLQELCCRAIVARTTVY------AINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 353 (432)
+-|||.||+.+|..|...- .|.+||||..||..|.-+.
T Consensus 3 P~sLQHLCRl~IR~~lg~~~l~~~~~i~~LpLP~~LK~YLly~~ 46 (57)
T cd03730 3 PRSLKHLCRLKIRACMGRLRLRCPVFMSFLPLPNRLKAYILYKE 46 (57)
T ss_pred CCCHHHHHHHHHHHHcCccccccccccccCCCCHHHHHHHHHhh
Confidence 4689999999999998653 4789999999999987664
No 417
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.60 E-value=0.0014 Score=46.00 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=28.8
Q ss_pred hhHhhhhhhhhhcccce----eeccCCCChHHHHHhh
Q psy3450 317 ISLQELCCRAIVARTTV----YAINQLPLPNLIKSHL 349 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 349 (432)
.|||.||+++|..|... ..|.+||||..||..|
T Consensus 4 ~sLqhLCR~~Ir~~lg~~~~~~~i~~LpLP~~Lk~yL 40 (44)
T cd03725 4 PPLKHLCRVFIRLCLRPWPVDVKVKALPLPDRLKWYL 40 (44)
T ss_pred cCHHHHHHHHHHHhcCccccccccccCCCCHHHHHHh
Confidence 58999999999999753 4789999999998876
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.57 E-value=0.02 Score=58.63 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCCcccchhh----hhcccC--ceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEECccCCCCc
Q psy3450 123 RVKLQLWDTSGQGRFCTII----RSYSRG--AQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGNRLHLAFNR 195 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~----~~~~~~--ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgNK~DL~~~r 195 (432)
.+.+.++||.|...+.... ..|+.. ..-+.||++++.. .+++++.++.+... |+ =++.+|.|-.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET--- 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDET--- 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEccccc---
Confidence 4468999999976554322 223322 3445667777765 45666666655543 33 4778999953
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCH
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNI 224 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI 224 (432)
-+.-....++.+.+.|+-.++ +|.+|
T Consensus 352 -~s~G~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 352 -TSLGNLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred -CchhHHHHHHHHhCCCeEEEe--CCCCC
Confidence 344556666666666655554 56665
No 419
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=96.56 E-value=0.0014 Score=45.58 Aligned_cols=35 Identities=40% Similarity=0.438 Sum_probs=30.1
Q ss_pred hhhHhhhhhhhhhcccc---eeeccCCCChHHHHHhhh
Q psy3450 316 VISLQELCCRAIVARTT---VYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 350 (432)
.-|||++|+.+|-.+.. ...|++||||..||..|.
T Consensus 3 P~sLq~LCR~~Ir~~lg~~~~~~i~~LplP~~Lk~yLl 40 (42)
T cd03716 3 PRSLQHLCRLAIRRCLGRRRLELIKKLPLPPRLKDYLL 40 (42)
T ss_pred CCCHHHHHHHHHHHHhCccccccCccCCCCHHHHHHHc
Confidence 36899999999998875 458999999999998774
No 420
>PRK13796 GTPase YqeH; Provisional
Probab=96.52 E-value=0.0035 Score=64.08 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEeCcccchhHHHHHhhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~ 81 (432)
.++.++|.+|||||||+|+|.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHH
Confidence 379999999999999999983
No 421
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.51 E-value=0.0094 Score=52.22 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
+.+.++|+++.. .......+..+|.++++.+.+ ..++..+...++.+.+.....++.+|.|+.+-
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 668999999753 233346788999999999865 44566655556666554445678899999974
No 422
>cd03723 SOCS_ASB4_ASB18 SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Asb4 was identified as imprinted gene in mice. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.50 E-value=0.0016 Score=46.64 Aligned_cols=34 Identities=38% Similarity=0.383 Sum_probs=29.0
Q ss_pred hhHhhhhhhhhhcccce---eeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVARTTV---YAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 350 (432)
-|||.+|+.+|..+... ..|++||||..||..|.
T Consensus 4 ~SLqhLCR~~IR~~lg~~~~~~I~~LpLP~~Lk~YLl 40 (48)
T cd03723 4 RSLQHLCRCAIRKLLGSRCHKLVPQLSLPTSLKNYLL 40 (48)
T ss_pred CCHHHHHHHHHHHHhcccccccCccCCCCHHHHHHHc
Confidence 58999999999987643 68999999999998774
No 423
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.50 E-value=0.0026 Score=64.91 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEeCcccchhHHHHHhhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~ 81 (432)
.+++++|.+|||||||+|+++
T Consensus 155 ~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999983
No 424
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.49 E-value=0.0037 Score=61.66 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-.+++|.+|||||||+|+|
T Consensus 166 ~svl~GqSGVGKSSLiN~L 184 (301)
T COG1162 166 ITVLLGQSGVGKSTLINAL 184 (301)
T ss_pred eEEEECCCCCcHHHHHHhh
Confidence 4679999999999999998
No 425
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.45 E-value=0.02 Score=51.78 Aligned_cols=83 Identities=13% Similarity=0.025 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCCcccch----hhhhc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCT----IIRSY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~----l~~~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
...+.|.||+|...+.. ....+ ....+.+++|+|..... +..++...+.+..+ ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~~~-- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCCCC--
Confidence 34578899999742211 11111 13489999999985432 33345555543322 24577799997432
Q ss_pred cCHHHHHHHHHhcCCcEE
Q psy3450 197 VTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~~ 214 (432)
...+...+...+.|+.
T Consensus 155 --~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 --GGAALSIRAVTGKPIK 170 (173)
T ss_pred --cchhhhhHHHHCcCeE
Confidence 2223335556666554
No 426
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.029 Score=58.29 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCcccch----hhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCT----IIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~----l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
..+.++||+|...... ....+. ....-.+||.|.+.. .+.+.+++..+... -+-=+|.+|.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~---~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH---GIHGCIITKVDEAA---- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC---CCCEEEEEeeeCCC----
Confidence 4578999999654322 111221 223457888888744 34445444444322 12347789999642
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCH-HHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNI-RESF 228 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI-~elf 228 (432)
..-.+..++...+.++..++ +|.+| +++.
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred CccHHHHHHHHhCCCEEEEE--CCCCchhhhh
Confidence 33455667777888877776 67777 4443
No 427
>KOG0465|consensus
Probab=96.40 E-value=0.019 Score=61.19 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=51.5
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
+.++++++||||+-.|.--....++--|+.++|+|....-.-+...-|.+. +++ ++|.|...||.|.
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry--~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY--NVPRICFINKMDR 168 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc--CCCeEEEEehhhh
Confidence 368899999999998887778888999999999997765433444555443 333 4899999999996
No 428
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.031 Score=58.53 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=52.7
Q ss_pred EEEEEeCCCCcccchh-h---hh--cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEECccCCCCccc
Q psy3450 125 KLQLWDTSGQGRFCTI-I---RS--YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGNRLHLAFNRTV 197 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l-~---~~--~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgNK~DL~~~r~v 197 (432)
.+.|+||+|....... . .. ....+|.+++|+|.+... +.......+.+ .+++ -+|.||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a---- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTA---- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCC----
Confidence 6799999997543211 1 11 133678999999987642 22223333332 2333 47789999632
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
..-.+...+...+.|+..++ +|++++++
T Consensus 247 ~~G~~ls~~~~~~~Pi~fig--~Ge~v~Dl 274 (437)
T PRK00771 247 KGGGALSAVAETGAPIKFIG--TGEKIDDL 274 (437)
T ss_pred cccHHHHHHHHHCcCEEEEe--cCCCcccC
Confidence 12345556667777777666 35555444
No 429
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.013 Score=60.19 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=54.6
Q ss_pred EEEEEEeCCCCcccch--h--hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCT--I--IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~--l--~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
+.+.|+||+|...... + ...++ ...+.++||.|++-. ..++..++..+... -.-=+|.+|.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~idglI~TKLDET~---- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HIDGIVFTKFDETA---- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---CCCEEEEEcccCCC----
Confidence 5789999999743211 1 12222 234678899887643 23445555555432 12357789999643
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
..-.+..++...+.|+..++ +|.+|.+
T Consensus 392 k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 392 SSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 23445667777788777665 5666543
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.03 Score=62.04 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCcccch-h---hhhc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCT-I---IRSY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~-l---~~~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
..+.|+||+|...... + .... ....+-++||.|.+.. .+.+.+....+.....--+-=+|.+|.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~---- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT---- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC----
Confidence 4689999999432211 1 1111 1234567899998753 3344444444433211012347789999643
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCH-HHHH----HHHHHHHhh
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNI-RESF----TELSRRALQ 237 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI-~elf----~~L~~~i~~ 237 (432)
..-.+..+....+.|+..++ +|.+| +++. +.+++.++.
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 23345666777788877776 67777 5553 345555554
No 431
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.31 E-value=0.0024 Score=44.38 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=29.0
Q ss_pred hhHhhhhhhhhhcccc---eeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVARTT---VYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 350 (432)
-|||.+|+.+|..+.. ...|++||||..|+..|.
T Consensus 4 ~sLqhLCR~~Ir~~lg~~~~~~i~~L~LP~~Lk~yL~ 40 (42)
T cd03729 4 LSLQQLCRINLRKALGTRALEKIAKLNIPNRIIDYLS 40 (42)
T ss_pred CCHHHHHHHHHHHHhchhhhccCccCCCCHHHHHHHc
Confidence 5899999999998764 456899999999998774
No 432
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.0028 Score=59.16 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEEEeCCCCcccchh----hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCTI----IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l----~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
+.+.++||+|...+... ...++ ...+-++||.|++... +.+..+.. ..+..+ +-=+|.+|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~~--~~~lIlTKlDet~---- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAFG--IDGLILTKLDETA---- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHSS--TCEEEEESTTSSS----
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhccc--CceEEEEeecCCC----
Confidence 56899999996543221 11222 2467889999987653 33333222 222211 2346689999632
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
..-.+..++...+.|+-.++ +|.+|++
T Consensus 155 ~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 33456677777888877776 5666643
No 433
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.28 E-value=0.0072 Score=59.74 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEEeCcccchhHHHHHhhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~ 81 (432)
-.++++|.+|||||||+|.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~ 182 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALL 182 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999983
No 434
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.032 Score=58.21 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred EEEEEEEeCCCCcccc----hhhhhccc---CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc
Q psy3450 123 RVKLQLWDTSGQGRFC----TIIRSYSR---GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~----~l~~~~~~---~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r 195 (432)
.+.+.|+||+|..... .....++. .-.-+++|.+.+-. ..++...+..+.... +-=+|.+|.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~---~~~vI~TKlDet~-- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP---LDGLIFTKLDETS-- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC---CCEEEEecccccc--
Confidence 3578999999974332 11222333 23456777887643 334444444443221 2258899999632
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCH-HHH
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNI-RES 227 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI-~el 227 (432)
..-.+..++...+.++..++ +|.+| +++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl 400 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRVPDDI 400 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence 33456777778888887776 57775 444
No 435
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=96.27 E-value=0.0025 Score=44.96 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=29.7
Q ss_pred hhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVART---TVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 350 (432)
-+||++|+.+|-.|. ....|++||||..+|..|.
T Consensus 4 ~sL~~LCRl~IR~~lG~~~l~~I~~L~lP~~Lk~yLl 40 (45)
T cd03726 4 RTLQDLCRIKIRHCIGLQNLKLLDELPIAKVMKDYLK 40 (45)
T ss_pred cCHHHHHHHHHHHHHhhhhcccCccCCCCHHHHHHHh
Confidence 589999999998777 5568999999999998875
No 436
>KOG0079|consensus
Probab=96.24 E-value=0.00093 Score=58.84 Aligned_cols=49 Identities=29% Similarity=0.439 Sum_probs=42.0
Q ss_pred cccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEe
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLV 66 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvv 66 (432)
++|.|||+++|||+|+||++++.+|.+ +.|...+-.+.+.|+.+|-+=|
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i 52 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDI 52 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeec
Confidence 678899999999999999999999998 6777777788888887776544
No 437
>KOG0085|consensus
Probab=96.21 E-value=0.0059 Score=57.77 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=67.1
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCC----------CCCChhhHHHHHHHHHhhC--CCCcEEEEEECc
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDIT----------NKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRL 189 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt----------~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~ 189 (432)
.++.+.+.|.+||..-+..|-..+.+.-.+++++.++ +....++...++..|..+. .+.++|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3445667777777655555555555555555544332 1222233333333333332 468999999999
Q ss_pred cCCCCc----------------ccCHHHHHHHHHhc----C-----C-cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 190 HLAFNR----------------TVTTREAEMYAIKN----Q-----M-AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 190 DL~~~r----------------~v~~ee~~~~a~~~----~-----~-~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
||.++. +-..+.+.+|.-++ + + ---.+.|.+-.||.-+|..+-..+++.+
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 985421 12233444554432 2 1 1123567788899999999988887643
No 438
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.0079 Score=69.24 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=65.9
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc-----
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG----- 135 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e----- 135 (432)
.=.+|||++|+||||++.. .+..|+-....+ ..-..+.| +. ..|. -+.+ +-.++||+|..
T Consensus 126 PWy~viG~pgsGKTtal~~--sgl~Fpl~~~~~---~~~~~~~g-T~-~cdw-----wf~d---eaVlIDtaGry~~q~s 190 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLN--SGLQFPLAEQMG---ALGLAGPG-TR-NCDW-----WFTD---EAVLIDTAGRYITQDS 190 (1188)
T ss_pred CceEEecCCCCCcchHHhc--ccccCcchhhhc---cccccCCC-Cc-ccCc-----cccc---ceEEEcCCcceecccC
Confidence 4578999999999999985 455555322111 11111111 00 0011 1122 24788999842
Q ss_pred ---ccchhhhhc---------ccCceEEEEEEeCCCCCChhh---------HHHHHHHHHhhC-CCCcEEEEEECccCCC
Q psy3450 136 ---RFCTIIRSY---------SRGAQGILLVYDITNKWSFDG---------IDRWLKEVEEHA-PGVPKVLVGNRLHLAF 193 (432)
Q Consensus 136 ---~~~~l~~~~---------~~~ad~iIlV~Dvt~~~Sf~~---------l~~~l~~i~~~~-~~iPiILVgNK~DL~~ 193 (432)
.-...|..+ .+-.|+||+..|+.+.-+-+. ++.-++++.+.- -..||.|++||.|+..
T Consensus 191 ~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 191 ADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred cchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 122233333 255799999999875322221 222344444433 4799999999999853
No 439
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.15 E-value=0.054 Score=54.49 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=57.4
Q ss_pred EEEEEEeCCCCcccchhhhhcc--------cCceEEEEEEeCCCCCChhh-H-HHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYS--------RGAQGILLVYDITNKWSFDG-I-DRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~--------~~ad~iIlV~Dvt~~~Sf~~-l-~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
+...++.|.|...-......+. -..|+++-|+|+.+-..... + ....+++.. -=+||.||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence 5567888988765434333332 23588999999876533222 2 222233322 2378899999976
Q ss_pred CcccCHHHHHHHHHhcC--CcEEEEcCCCCCCHHHHHH
Q psy3450 194 NRTVTTREAEMYAIKNQ--MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 194 ~r~v~~ee~~~~a~~~~--~~~~evSAktg~nI~elf~ 229 (432)
..+ .+..++..++.+ +++++++.. +....+++.
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll~ 194 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSYG-DVDLAELLD 194 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhhc
Confidence 543 455566666665 588888873 334443433
No 440
>KOG0464|consensus
Probab=96.11 E-value=0.0022 Score=65.14 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=81.9
Q ss_pred ceEEEEEeCcccchhHHHHHhhhc-CCCCc--ccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYL-ESRFP--RFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~-~~~~~--~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..-+|-++..-.+||||...|++- .+..- ..-.++.+...+- .++ ....+....--+.++.+..+++++||||+-
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfl-a~e-rergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFL-AIE-RERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHH-HHH-HhcCceeeeeeeecccccceEeeecCCCcc
Confidence 344678888889999999988721 11110 0000111110000 000 001123333444556666778999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
.|+-.....++--|+++.|||.+-.-.-+.+..|.+.-+ -++|-+...||+|..
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk---~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK---FKIPAHCFINKMDKL 167 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc---cCCchhhhhhhhhhh
Confidence 998888899999999999999987655566677765322 358999999999963
No 441
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.11 E-value=0.0097 Score=54.17 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
||++-|++|+|||||++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~ 19 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKV 19 (168)
T ss_dssp EEEEES-TTSSHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHH
Confidence 6899999999999999997
No 442
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.11 E-value=0.044 Score=55.02 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=51.8
Q ss_pred EEEEEEeCCCCcccchhhhhccc--------CceEEEEEEeCCCCCChh-hHHHHHHHHHhhCCCCcEEEEEECccCCCC
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSR--------GAQGILLVYDITNKWSFD-GIDRWLKEVEEHAPGVPKVLVGNRLHLAFN 194 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~--------~ad~iIlV~Dvt~~~Sf~-~l~~~l~~i~~~~~~iPiILVgNK~DL~~~ 194 (432)
....++.|.|..+-..+...++. ..++++-|+|+.+..... +......++.. -=+||.||+|+..+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEEEeccccCCH
Confidence 45678889997655444443321 248899999987532211 11112223332 23788899999653
Q ss_pred cccCHHHHHHHHHhcC--CcEEEEcCCCCCCHHHHH
Q psy3450 195 RTVTTREAEMYAIKNQ--MAFFEVSPLCDFNIRESF 228 (432)
Q Consensus 195 r~v~~ee~~~~a~~~~--~~~~evSAktg~nI~elf 228 (432)
.+...+..+..+ ++++++. ........+|
T Consensus 166 ----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 166 ----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred ----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 245555555544 5666654 2223444444
No 443
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.10 E-value=0.04 Score=49.97 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=62.3
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHH
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTRE 201 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee 201 (432)
..+.+.|+||++... ......+..+|.+|++...+ ..+...+..+++.+++. +.|+.+|.||.|... ...++
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~---~~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF--GIPVGVVINKYDLND---EIAEE 162 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCc---chHHH
Confidence 457789999997642 22335568899999999876 45677777887777654 467899999999642 23456
Q ss_pred HHHHHHhcCCcEEE
Q psy3450 202 AEMYAIKNQMAFFE 215 (432)
Q Consensus 202 ~~~~a~~~~~~~~e 215 (432)
+.+++++.+++++.
T Consensus 163 ~~~~~~~~~~~vl~ 176 (179)
T cd03110 163 IEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHcCCCeEE
Confidence 77788888887653
No 444
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.07 E-value=0.12 Score=53.43 Aligned_cols=173 Identities=20% Similarity=0.160 Sum_probs=92.7
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccc----cCCCCcCccccCCCccccc-----cceeEEEEEE-CCeEEEEEEE
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFW----LDGSSESPFCSGSGKYDDM-----LAYKTTTILL-DGKRVKLQLW 129 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~----~~~~~~~~~~~~ig~~~~t-----id~~~~~i~i-~~~~v~l~i~ 129 (432)
.+=+-|||+-.+|||||++||+---..|... .....+.-+..+.|.+-.| +.-....+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3557899999999999999983221111100 0001111112233322211 1222344555 4668899999
Q ss_pred eCCCC--------c--ccchh--hhh-----------------cccC--ceEEEEEEeCC----CCCChhhH-HHHHHHH
Q psy3450 130 DTSGQ--------G--RFCTI--IRS-----------------YSRG--AQGILLVYDIT----NKWSFDGI-DRWLKEV 173 (432)
Q Consensus 130 Dt~G~--------e--~~~~l--~~~-----------------~~~~--ad~iIlV~Dvt----~~~Sf~~l-~~~l~~i 173 (432)
|+.|- + .-..+ .++ .+++ .=++++.-|.+ .++++.+. .+.++++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 98772 1 10111 111 1122 23455555543 24455555 5567777
Q ss_pred HhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 174 EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 174 ~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++. +.|++++.|-.+-. ..-+.+-+.++.++++++.+.+++..- +-+++..-|-+.+++
T Consensus 177 k~i--gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVLYE 235 (492)
T ss_pred HHh--CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHHhc
Confidence 765 47999999987742 223445566777889999999987533 334444443333433
No 445
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.07 E-value=0.017 Score=51.35 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=34.6
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
.+.+.|+||+|.... ...++..+|-+|+|...+--+.+. +.++ ..+. .-=++|.||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~-~~k~-~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQ-AIKA-GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHH-Hhhh-hHhh-----hcCEEEEeCCC
Confidence 467899999986532 234788899999987654111111 1111 1122 23478889998
No 446
>KOG0098|consensus
Probab=96.05 E-value=0.0042 Score=56.89 Aligned_cols=48 Identities=25% Similarity=0.543 Sum_probs=37.2
Q ss_pred ccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEe
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLV 66 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvv 66 (432)
++++||++++||.||||++++.||.+ ..|.+....+.+.++-.+-+-|
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~i 50 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTI 50 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEE
Confidence 57999999999999999999999998 5666666666666555443333
No 447
>KOG0460|consensus
Probab=96.04 E-value=0.034 Score=55.58 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=85.7
Q ss_pred ccceEEEEEeCcccchhHHHHHhhh---cC---CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLY---LE---SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~---~~---~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
..+-.+|--||.-.-|||||-..+. .. .++..+..-.........++ ....-.+.+.-..-.+--.|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI-------TIn~aHveYeTa~RhYaH~D 123 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI-------TINAAHVEYETAKRHYAHTD 123 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc-------eEeeeeeeeeccccccccCC
Confidence 3456789999999999999987651 11 11111111111111111122 33333333433334456679
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc---cCHHHHHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT---VTTREAEMYAI 207 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~---v~~ee~~~~a~ 207 (432)
+||+.+|-...-.-...-|+.|||+..+|..- ..-++-+...++..- ..+++..||.|+.++.+ .-+-+++++..
T Consensus 124 CPGHADYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV-~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 124 CPGHADYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV-KHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred CCchHHHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC-ceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 99998774322222345799999999998642 222333333333321 24678889999975432 22345667777
Q ss_pred hcC-----CcEEEEcCC
Q psy3450 208 KNQ-----MAFFEVSPL 219 (432)
Q Consensus 208 ~~~-----~~~~evSAk 219 (432)
.++ +|++.=||+
T Consensus 202 e~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HcCCCCCCCCeeecchh
Confidence 776 467766654
No 448
>KOG3859|consensus
Probab=96.04 E-value=0.014 Score=56.76 Aligned_cols=145 Identities=17% Similarity=0.250 Sum_probs=78.5
Q ss_pred eeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE 96 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~ 96 (432)
.+.+.++-+ +|-.++-+...+ ......+.++|+.||..|.|||||+..||... | .....
T Consensus 14 ~R~l~l~GH-vGFdsLPdQLV~--------------ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~-f-----~~~p~ 72 (406)
T KOG3859|consen 14 CRTLQLAGH-VGFDSLPDQLVN--------------KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-F-----ESEPS 72 (406)
T ss_pred ceeeeecCc-cCcccChHHHHH--------------HHHhcCceEEEEEeccCCccHHHHHHHHhccc-c-----CCCCC
Confidence 455555544 665555444333 23344678999999999999999999985432 1 11111
Q ss_pred CccccCCCccccccceeEEE--EEECCeEEEEEEEeCCCC-------cccchhh-------hhc-------------c--
Q psy3450 97 SPFCSGSGKYDDMLAYKTTT--ILLDGKRVKLQLWDTSGQ-------GRFCTII-------RSY-------------S-- 145 (432)
Q Consensus 97 ~~~~~~ig~~~~tid~~~~~--i~i~~~~v~l~i~Dt~G~-------e~~~~l~-------~~~-------------~-- 145 (432)
+...+++ .....+ +.-.+-.+++.|.||.|- +.|..+. ..| +
T Consensus 73 ~H~~~~V-------~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hD 145 (406)
T KOG3859|consen 73 THTLPNV-------KLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHD 145 (406)
T ss_pred ccCCCCc-------eeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222333 333333 333466788999999983 1222211 111 2
Q ss_pred cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 146 RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 146 ~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
...+++++....+- .++..++-. .+++...++.||-|+-|.|-.
T Consensus 146 sRiH~CLYFI~PTG-H~LKslDLv--tmk~LdskVNIIPvIAKaDti 189 (406)
T KOG3859|consen 146 SRIHVCLYFISPTG-HSLKSLDLV--TMKKLDSKVNIIPVIAKADTI 189 (406)
T ss_pred CceEEEEEEecCCC-cchhHHHHH--HHHHHhhhhhhHHHHHHhhhh
Confidence 34577777776653 344444221 122222345666667788863
No 449
>PRK00098 GTPase RsgA; Reviewed
Probab=96.03 E-value=0.013 Score=58.15 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|.+|||||||+|.+
T Consensus 166 ~~~~~G~sgvGKStlin~l 184 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNAL 184 (298)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 450
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.03 E-value=0.073 Score=50.80 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=38.6
Q ss_pred EEEEEEeC-CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 124 VKLQLWDT-SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 124 v~l~i~Dt-~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
..+.+.|| +|.|.|. +...+++|.+|.|.|.+.+ |+....+..+...+. .=.++.+|.||.|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-GIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-CCceEEEEEeeccc
Confidence 34566666 3444432 3456889999999997643 444444333322222 12589999999995
No 451
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=95.97 E-value=0.0057 Score=56.60 Aligned_cols=49 Identities=49% Similarity=0.683 Sum_probs=33.8
Q ss_pred cccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEe
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLV 66 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvv 66 (432)
++++.+||+++|+.|+|||+++.++.. ..+.+.+.++...++..+.+.+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~ 50 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILL 50 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEE
Confidence 467889999999999999999999987 4454444444444443333333
No 452
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=95.91 E-value=0.004 Score=43.25 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=29.0
Q ss_pred hhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVART---TVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 350 (432)
.||+++|+.+|-.|. ....|++||||..||..|.
T Consensus 4 ~sL~~lCRl~IR~~lg~~~l~~I~~L~LP~~Lk~yLl 40 (42)
T cd03743 4 LPLMDLCRRSARQALGRHRLHHIQSLPLPQTLKNYLQ 40 (42)
T ss_pred cCHHHHHHHHHHHHHhHhhhccCccCCCCHHHHHHHc
Confidence 589999999987766 5568999999999998875
No 453
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.89 E-value=0.023 Score=51.83 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 149 QGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 149 d~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
|++++|.|+.++.+..+ ..+.+.+.....+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999988754332 233333211123579999999999954
No 454
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.85 E-value=0.011 Score=53.96 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=42.9
Q ss_pred EEEEEEEeCCCCcccchh--hhh-c--ccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCTI--IRS-Y--SRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l--~~~-~--~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
.....|+.+.|......+ ... + .-..+.+|.|+|+.+......+ ..+..++... =+||.||+|+..+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE- 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-
Confidence 355677888886544443 010 0 1246889999998765333444 3333444332 27788999986433
Q ss_pred cCHHHHHHHHHhc
Q psy3450 197 VTTREAEMYAIKN 209 (432)
Q Consensus 197 v~~ee~~~~a~~~ 209 (432)
...+..++..++.
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 1224445555544
No 455
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.018 Score=59.01 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCCcccch----hhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCT----IIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~----l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
.+.+.|+||+|...... ....+.. ..+.++||.+.+. ...++..++..+... -+--+|.+|.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l---~i~glI~TKLDET~--- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEI---PIDGFIITKMDETT--- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcC---CCCEEEEEcccCCC---
Confidence 36789999999743321 1122222 3466677776532 234444433332221 13357799999632
Q ss_pred cCHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 197 VTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
..-.+..++...+.|+..++ +|.+|.+
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 33456667777888877776 5666654
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.79 E-value=0.051 Score=57.51 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=55.9
Q ss_pred EEEEEeCCCCcccchh-h--hhcccC---ceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC
Q psy3450 125 KLQLWDTSGQGRFCTI-I--RSYSRG---AQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT 198 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l-~--~~~~~~---ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~ 198 (432)
.+.++||+|....... . ...+.+ ..-.+||.|.+.. ...+.+....+... ..--+|.||.|-.. .
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~~---~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRGP---GLAGCILTKLDEAA----S 406 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhccC---CCCEEEEeCCCCcc----c
Confidence 5789999995432211 0 111111 1226788887643 23333333333222 23356789999532 3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCCH-HHHHH----HHHHHHhh
Q psy3450 199 TREAEMYAIKNQMAFFEVSPLCDFNI-RESFT----ELSRRALQ 237 (432)
Q Consensus 199 ~ee~~~~a~~~~~~~~evSAktg~nI-~elf~----~L~~~i~~ 237 (432)
.-.+..++...+.++..++ +|.+| +++.. .+++.++.
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 3456677778888877776 67787 55543 34455544
No 457
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.086 Score=54.35 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=56.4
Q ss_pred EEEEEEEeCCCCcccchh----hhhcccC--ce-EEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc
Q psy3450 123 RVKLQLWDTSGQGRFCTI----IRSYSRG--AQ-GILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l----~~~~~~~--ad-~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r 195 (432)
.+.+.++||+|......+ ...++.. .+ -.+||.|++.. ..++.+.+..+... -+-=+|.+|.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~---~~~~~I~TKlDet~-- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF---SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC---CCCEEEEEeccCCC--
Confidence 467899999996533211 1122222 13 57899998865 34444444443322 13457789999632
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCH-HHHHH
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNI-RESFT 229 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI-~elf~ 229 (432)
..-.+..++...+.|+..++ +|.+| +++..
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIVPHNISI 357 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 23445666777788776665 67777 45443
No 458
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=95.60 E-value=0.006 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.1
Q ss_pred hhHhhhhhhhhhcccc---eeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVARTT---VYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 350 (432)
-+||.+|+.+|..+.. ...|++||||..|+..|.
T Consensus 4 ~sLq~LCRl~IR~~lg~~~l~~I~~L~LP~~Lk~YLl 40 (45)
T cd03721 4 RPLAHLCRLKVRTLIGINRIKLIDTLPLPPRLIRYLN 40 (45)
T ss_pred CCHHHHHHHHHHHHHhHHhhccCccCCCCHHHHHHHc
Confidence 5899999999998874 357899999999998774
No 459
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.57 E-value=0.081 Score=55.24 Aligned_cols=94 Identities=15% Similarity=0.043 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCCcccch-hhh---hc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCT-IIR---SY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~-l~~---~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
.+.+.|+||+|...... +.. .+ .-..+.++||.|.+.. ++...+...+....+ ..=+|.||.|-..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~--i~giIlTKlD~~~--- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG--LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC--CCEEEEeCccCcc---
Confidence 35689999999643221 111 11 2347888999998643 444455555543321 2347789999532
Q ss_pred cCHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 197 VTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
..-.+...+...+.|+..+.. |++++++
T Consensus 254 -~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 254 -RGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred -cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 122366677778888777663 5555554
No 460
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.055 Score=53.08 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=55.8
Q ss_pred EEEEEEEeCCCCcccch-h---hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 123 RVKLQLWDTSGQGRFCT-I---IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~-l---~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
.+.+.|+||+|...... . +..++ -..+-++||.|++.. .+++..++..+... .+-=+|.+|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~---~~~~~I~TKlDet~--- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC---CCCEEEEEeecCCC---
Confidence 46789999999753211 1 11222 234668999997643 34455555555432 23357789999643
Q ss_pred cCHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 197 VTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
..-.+..++...+.|+..++ +|.+|.+
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 23345566777788877776 5666643
No 461
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.48 E-value=0.17 Score=47.39 Aligned_cols=88 Identities=16% Similarity=0.096 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCCcccchhhh-hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcE-EEEEECccCCCCcccC
Q psy3450 123 RVKLQLWDTSGQGRFCTIIR-SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPK-VLVGNRLHLAFNRTVT 198 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~-~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPi-ILVgNK~DL~~~r~v~ 198 (432)
.+.+.++|++|......+.. ...+.+|.+|++.+.+ ..++..+...++.+++.. .+.++ .+|.||.|.. ..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~ 190 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE 190 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence 47789999976542222211 1124799999999763 445555555545444432 24443 4899999853 23
Q ss_pred HHHHHHHHHhcCCcEEE
Q psy3450 199 TREAEMYAIKNQMAFFE 215 (432)
Q Consensus 199 ~ee~~~~a~~~~~~~~e 215 (432)
.+..+++.+.++.+.+.
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 44566777777765543
No 462
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.42 E-value=0.25 Score=44.29 Aligned_cols=84 Identities=15% Similarity=-0.048 Sum_probs=52.6
Q ss_pred EEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH
Q psy3450 125 KLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM 204 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~ 204 (432)
.+.|+|+++.... .....+..+|.+|++.+.+ ..++..+..+++.+.... .....+|.|+.|-... ...+....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~iv~N~~~~~~~--~~~~~~~~ 137 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-IKVVGVIVNRVRPDMV--EGGDMVED 137 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CceEEEEEeCCccccc--chhhHHHH
Confidence 5799999976432 2334567899999999865 446777777777666532 2346789999986321 12222334
Q ss_pred HHHhcCCcEE
Q psy3450 205 YAIKNQMAFF 214 (432)
Q Consensus 205 ~a~~~~~~~~ 214 (432)
+.+.++.+++
T Consensus 138 ~~~~~~~~v~ 147 (179)
T cd02036 138 IEEILGVPLL 147 (179)
T ss_pred HHHHhCCCEE
Confidence 4455566554
No 463
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.38 E-value=0.013 Score=52.17 Aligned_cols=43 Identities=35% Similarity=0.601 Sum_probs=32.0
Q ss_pred cceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEE
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLK 62 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iK 62 (432)
|+.+||+++|+.++|||+++.++.. ..+.+.+.++...++..+
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~ 43 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIR 43 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEE
Confidence 5779999999999999999999987 555555455554444433
No 464
>cd03731 SOCS_ASB15 SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB15 is expressed predominantly in skeletal muscle and participates in the regulation of protein turnover and muscle cell development by stimulating protein synthesis and regulating differentiation of muscle cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=95.37 E-value=0.009 Score=44.14 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.2
Q ss_pred hhHhhhhhhhhhcccc------eeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVARTT------VYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 350 (432)
-|||++|+.+|-.|.. ...|++||||..||..|.
T Consensus 4 ~sL~~LCRl~IR~~lG~~~l~~~~~I~~LpLP~~Lk~YLl 43 (56)
T cd03731 4 RPLKHLCRLKIRKLMGLQKLQQPSSMKKLPLPPALKRYIL 43 (56)
T ss_pred CCHHHHHHHHHHHHHhHHhhccccccccCCCCHHHHHHHh
Confidence 5799999999988874 346999999999998875
No 465
>PRK10867 signal recognition particle protein; Provisional
Probab=95.36 E-value=0.043 Score=57.35 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCCcccch-hhh---hc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCc
Q psy3450 123 RVKLQLWDTSGQGRFCT-IIR---SY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNR 195 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~-l~~---~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r 195 (432)
.+.+.|+||+|...... +.. .+ .-..+.+++|.|.... +++..+...+.+. ++ .-+|.||.|-...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~i~giIlTKlD~~~r- 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LGLTGVILTKLDGDAR- 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CCCCEEEEeCccCccc-
Confidence 36689999999543211 111 11 1246778999997542 3444444444432 22 2467799996321
Q ss_pred ccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 196 TVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
.-.+...+...+.|+..++. |++++++
T Consensus 256 ---gG~alsi~~~~~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT--GEKLDDL 282 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC--CCccccC
Confidence 12356666777888766653 5555443
No 466
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.35 E-value=0.014 Score=52.56 Aligned_cols=48 Identities=38% Similarity=0.533 Sum_probs=34.0
Q ss_pred cceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
++.+|++++|++++|||+++.++.. ..+.....++...+...+.+.++
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~ 49 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYN 49 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEc
Confidence 5789999999999999999999876 44544444454444444444444
No 467
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=95.18 E-value=0.0049 Score=57.77 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=34.3
Q ss_pred eeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCc
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGD 68 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~ 68 (432)
+||+++|++++|||+++.++.. ..+.+.+.++.+.+...|.+-++.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~ 46 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKE 46 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcC
Confidence 5999999999999999999987 555555555665555556555543
No 468
>PLN03110 Rab GTPase; Provisional
Probab=95.13 E-value=0.017 Score=54.37 Aligned_cols=49 Identities=37% Similarity=0.551 Sum_probs=33.8
Q ss_pred cccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEe
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLV 66 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvv 66 (432)
++++.+||+++|+.|+|||+++.++.. ..+...+.++.+.++..+.+.+
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~ 56 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQV 56 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEE
Confidence 467899999999999999999999876 4443333444444444343333
No 469
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.11 E-value=0.05 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-+++.|++|+|||+|++.+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 470
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.03 E-value=0.24 Score=50.20 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred EEEEEEeCCCCcccchhhhhcc-------cCceEEEEEEeCCCCCC--h--------------------hhH-HHHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYS-------RGAQGILLVYDITNKWS--F--------------------DGI-DRWLKEV 173 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~-------~~ad~iIlV~Dvt~~~S--f--------------------~~l-~~~l~~i 173 (432)
....+++|.|......+...+. -..|++|-|+|+.+... + ..+ ..+..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999766545444331 14688999999874321 0 001 1122333
Q ss_pred HhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh-cC--CcEEEEcCCCCCCHHHHHH
Q psy3450 174 EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQ--MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 174 ~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-~~--~~~~evSAktg~nI~elf~ 229 (432)
.. .=+||.||+|+..+.+ .+..++..+. ++ ++++++. ........+|.
T Consensus 173 ~~-----AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 AC-----ADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred Hh-----CCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 32 2378899999965432 2334444544 33 2566654 33445666654
No 471
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.97 E-value=0.021 Score=52.92 Aligned_cols=26 Identities=46% Similarity=0.807 Sum_probs=23.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+|+.+||+++|+.|+|||+++.++..
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 56789999999999999999999976
No 472
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.83 E-value=0.094 Score=42.99 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=32.1
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~ 171 (432)
+.+.++|+++... ......+..+|.++++.+.+ ..++..+.++++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 6789999998643 22336677899999999764 456666666665
No 473
>cd03728 SOCS_ASB_9_11 SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=94.73 E-value=0.016 Score=40.20 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=28.1
Q ss_pred hhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVART---TVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 350 (432)
-+|+++|+.+|-.+- ....|++||||..|+..|.
T Consensus 4 ~sL~~LCRl~iR~~lg~~~~~~I~~L~lP~~Lk~yLl 40 (42)
T cd03728 4 PSLMQLCRLCIRKCFGRKQHHKIHKLHLPEPLKHFLL 40 (42)
T ss_pred cCHHHHHHHHHHHHHhHHHHccCccCCCCHHHHHHHc
Confidence 479999998876554 6678999999999998773
No 474
>KOG2485|consensus
Probab=94.71 E-value=0.028 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
...+.+.|+|-||||||||+|.+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~ 163 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINAL 163 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHH
Confidence 45689999999999999999986
No 475
>cd03719 SOCS_SSB2 SOCS (suppressors of cytokine signaling) box of SSB2 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB2 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB2, like SSB4 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=94.70 E-value=0.017 Score=40.07 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.4
Q ss_pred hhHhhhhhhhhhc---ccceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVA---RTTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 350 (432)
-+|+.+|+.+|-. ......|++||||..|+..|.
T Consensus 4 ~sL~~LcRl~IR~~lg~~~l~~i~~L~LP~~Lk~YLl 40 (42)
T cd03719 4 HSLLHLSRLCVRHALGDTRLGQVSALPLPPAMKRYLL 40 (42)
T ss_pred CCHHHHHHHHHHHHHhHHHhccCccCCCCHHHHHHHc
Confidence 4788898877644 457789999999999998774
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.70 E-value=0.021 Score=48.07 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|.|.+||||||+.+.|
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4889999999999999998
No 477
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.69 E-value=0.026 Score=50.73 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=34.2
Q ss_pred eeeEEEEecCCCcccceechhhhHHHHHhhhcC-ccccccccccceEEEEEeC
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKLELTAWLMETK-PVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~-~~~~~~~~~~~~iKVvvvG 67 (432)
.+|++++|+.|+|||+++.++.. ..+. ..+.++...++..+.+.++
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~ 50 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVY 50 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEEC
Confidence 47999999999999999999987 5555 4555666655555555443
No 478
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.68 E-value=0.43 Score=46.26 Aligned_cols=67 Identities=22% Similarity=0.117 Sum_probs=41.3
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEE-EEEECccC
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKV-LVGNRLHL 191 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiI-LVgNK~DL 191 (432)
.+.+.|+||+|...... ....+..+|.+|++... +..++..+...++.+... ..+++++ +|.|+.|.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p-~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDN-DFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecC-CcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 46789999977532211 12336789999998865 444566655555444432 2455543 78899884
No 479
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.68 E-value=0.029 Score=49.79 Aligned_cols=25 Identities=44% Similarity=0.881 Sum_probs=22.8
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|+.+||+++|+.|+|||+++.++..
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Confidence 5779999999999999999999865
No 480
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=94.65 E-value=1.2 Score=40.58 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=66.2
Q ss_pred CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 147 GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 147 ~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
..|.|+|++|..+..|++.++.=+..+...+---.+.++++-..-.+...+..++..+++..+.++++.+--.+..+...
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 58999999999999999988776666654432224556666665555577889999999999999999887666666666
Q ss_pred HHHHHHHHH
Q psy3450 227 SFTELSRRA 235 (432)
Q Consensus 227 lf~~L~~~i 235 (432)
+=+.|.+.+
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 666666555
No 481
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.65 E-value=0.028 Score=50.22 Aligned_cols=26 Identities=38% Similarity=0.852 Sum_probs=23.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+++.+||+++|+.++|||+++.++..
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 46889999999999999999999876
No 482
>KOG0099|consensus
Probab=94.62 E-value=0.071 Score=51.52 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=52.2
Q ss_pred EEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC-------CChhhHHHHHHH---HHhhC--CCCcE
Q psy3450 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK-------WSFDGIDRWLKE---VEEHA--PGVPK 182 (432)
Q Consensus 115 ~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~-------~Sf~~l~~~l~~---i~~~~--~~iPi 182 (432)
+.+.++ .++++++|.+||..-+.-|-+.+.+..++|+|...++- .+-..+++-+.. +.+.. ..+.+
T Consensus 195 t~FqVd--kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisv 272 (379)
T KOG0099|consen 195 TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISV 272 (379)
T ss_pred EEEecc--ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhhe
Confidence 344444 46789999999998888899999999999999877641 111222222222 22222 35789
Q ss_pred EEEEECccCC
Q psy3450 183 VLVGNRLHLA 192 (432)
Q Consensus 183 ILVgNK~DL~ 192 (432)
||..||.|+.
T Consensus 273 IlFLNKqDll 282 (379)
T KOG0099|consen 273 ILFLNKQDLL 282 (379)
T ss_pred eEEecHHHHH
Confidence 9999999983
No 483
>PLN00023 GTP-binding protein; Provisional
Probab=94.62 E-value=0.013 Score=58.83 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=37.6
Q ss_pred cceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeCc
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVGD 68 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG~ 68 (432)
...+||+++|+.|+|||+++.++.. ..+...+.++.+.+..+|.+-++.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~ 67 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGS 67 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECC
Confidence 3458999999999999999999987 555555566666666667666653
No 484
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.62 E-value=0.18 Score=39.68 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=45.7
Q ss_pred EEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh-h
Q psy3450 63 FLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI-I 141 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l-~ 141 (432)
+++.|.+|+|||++...+.. .-.. .| .+...++ .+.++|+++.-..... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~----------~l~~------~g---------~~v~~~~----d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAA----------ALAK------RG---------KRVLLID----DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred EEEECCCCCCHHHHHHHHHH----------HHHH------CC---------CeEEEEC----CEEEEeCCCCccchhhhh
Confidence 57889999999999988610 0000 01 1222233 5789999986432221 1
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHH
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRW 169 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~ 169 (432)
......+|.++++.+.... +.......
T Consensus 53 ~~~~~~~~~vi~v~~~~~~-~~~~~~~~ 79 (99)
T cd01983 53 LLALLAADLVIIVTTPEAL-AVLGARRL 79 (99)
T ss_pred hhhhhhCCEEEEecCCchh-hHHHHHHH
Confidence 3556788999999886543 34444433
No 485
>cd03744 SOCS_SSB1 SOCS (suppressors of cytokine signaling) box of SSB1 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), both the absence and the presence of HGF and enhances the HGF-MET-induced mitogen-activated protein kinases Erk-transcription factor Elk-1-serum response elements (SRE) pathway. SSB1, like SSB2 and SSB4, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=94.60 E-value=0.019 Score=39.85 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.8
Q ss_pred hhHhhhhhhhhhccc---ceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVART---TVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 350 (432)
.+|+++|+.+|-.+- ....|++||||..|+..|.
T Consensus 4 ~sL~~LCRl~iR~~lg~~~l~~I~~L~LP~~Lk~YLl 40 (42)
T cd03744 4 LPLMDLCRRSVRLALGRERLSEIHTLPLPASLKNYLL 40 (42)
T ss_pred CCHHHHHHHHHHHHHhHhhhccCcCCCCCHHHHHHHc
Confidence 579999998886554 5578999999999998773
No 486
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.59 E-value=0.027 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.805 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+.+|++++|+.++|||+++.++..
T Consensus 1 ~~~ki~iiG~~~vGKTsli~~~~~ 24 (166)
T cd04122 1 YIFKYIIIGDMGVGKSCLLHQFTE 24 (166)
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999986
No 487
>KOG1424|consensus
Probab=94.57 E-value=0.06 Score=56.43 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhhcCccccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe
Q psy3450 43 WLMETKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK 122 (432)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~ 122 (432)
.+.+..........+...+.|-+||-|||||||+||.|....+......++.+. .|.+..+.-.-
T Consensus 297 ~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK--------------HFQTi~ls~~v- 361 (562)
T KOG1424|consen 297 RLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK--------------HFQTIFLSPSV- 361 (562)
T ss_pred hhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc--------------eeEEEEcCCCc-
Q ss_pred EEEEEEEeCCC
Q psy3450 123 RVKLQLWDTSG 133 (432)
Q Consensus 123 ~v~l~i~Dt~G 133 (432)
.+.|+||
T Consensus 362 ----~LCDCPG 368 (562)
T KOG1424|consen 362 ----CLCDCPG 368 (562)
T ss_pred ----eecCCCC
No 488
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.54 E-value=0.026 Score=51.62 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=33.4
Q ss_pred eeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
+|++++|+.++|||+++.++.. ..+.+.+.++.+.++..+.+-++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~ 45 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIR 45 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEEC
Confidence 5999999999999999999987 55655556666555544444444
No 489
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=94.42 E-value=0.033 Score=51.10 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=31.0
Q ss_pred ceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccce
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYL 60 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~ 60 (432)
..+|++++|+.++|||+++.++.. ..+.+.+.++...++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~ 43 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYT 43 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeE
Confidence 557999999999999999999987 5565555555554443
No 490
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=94.41 E-value=0.023 Score=39.43 Aligned_cols=34 Identities=38% Similarity=0.519 Sum_probs=27.9
Q ss_pred hhHhhhhhhhhhcc---cceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVAR---TTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 350 (432)
-||+++|+.+|-.| .....|++||||..|+..|.
T Consensus 4 ~sL~~lCRl~iR~~lg~~~~~~I~~L~lP~~Lk~yLl 40 (42)
T cd03724 4 SSLCQLCRLCIRNYIGRSRLHLIPQLQLPTLLKNFLQ 40 (42)
T ss_pred cCHHHHHHHHHHHHHhHhhhccCccCCCCHHHHHHHc
Confidence 57899999877554 46789999999999998774
No 491
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.097 Score=54.38 Aligned_cols=92 Identities=20% Similarity=0.087 Sum_probs=51.6
Q ss_pred EEEEEEEeCCCCcccch----hhhhccc-----CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 123 RVKLQLWDTSGQGRFCT----IIRSYSR-----GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~----l~~~~~~-----~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
.+.+.++||+|...... .+..+++ ...-.+||.|++.. .+++...+..+... -+-=+|.+|.|-..
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~---~~~glIlTKLDEt~ 373 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL---NYRRILLTKLDEAD 373 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC---CCCEEEEEcccCCC
Confidence 45679999999642211 1122222 23467889998765 23444444433222 12357789999632
Q ss_pred CcccCHHHHHHHHHhcCCcEEEEcCCCCCCHH
Q psy3450 194 NRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225 (432)
Q Consensus 194 ~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~ 225 (432)
..-.+..++...+.|+..++ +|.+|.
T Consensus 374 ----~~G~il~i~~~~~lPI~ylt--~GQ~VP 399 (432)
T PRK12724 374 ----FLGSFLELADTYSKSFTYLS--VGQEVP 399 (432)
T ss_pred ----CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 22345666777788776665 455543
No 492
>PLN03108 Rab family protein; Provisional
Probab=94.39 E-value=0.036 Score=51.85 Aligned_cols=49 Identities=24% Similarity=0.539 Sum_probs=33.8
Q ss_pred ccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
+++.+||+++|+.++|||+++.++.. ..+.+...++...++..+.+.++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~ 51 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITID 51 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEEC
Confidence 46789999999999999999999876 44444444444444444444443
No 493
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=94.38 E-value=0.029 Score=51.21 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.9
Q ss_pred eeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccce
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYL 60 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~ 60 (432)
++|++++|+.++|||+++.++.. ..|...+.++.+..+.
T Consensus 1 ~~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~ 39 (176)
T cd04133 1 FIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFS 39 (176)
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeE
Confidence 47999999999999999999997 6666556666655543
No 494
>PRK08118 topology modulation protein; Reviewed
Probab=94.27 E-value=0.031 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=18.3
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
||+|+|++|+|||||.+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L 21 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQL 21 (167)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999987
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.24 E-value=0.028 Score=50.30 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=15.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
||+|.|.+++|||||++.|
T Consensus 1 rI~i~G~~stGKTTL~~~L 19 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEAL 19 (163)
T ss_dssp -EEEE--TTSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 7999999999999999998
No 496
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.23 E-value=0.083 Score=53.14 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCC-cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 132 SGQ-GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~-e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+|+ .++.......+..+|+++-|.|+.++.+... ..+.+...+.|.++|+||.||.+. .+..+-.+.+.++.+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~ 91 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPK-EVTKKWKKYFKKEEG 91 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCH-HHHHHHHHHHHhcCC
Confidence 553 4556666778899999999999999876542 222333334567999999999653 233344444555556
Q ss_pred CcEEEEcCCCCCCHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~ 229 (432)
...+.++++.+.+...+..
T Consensus 92 ~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CccEEEEeecccCccchHH
Confidence 6778888888887766664
No 497
>cd03720 SOCS_ASB1 SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=94.21 E-value=0.025 Score=39.27 Aligned_cols=34 Identities=38% Similarity=0.478 Sum_probs=27.5
Q ss_pred hhHhhhhhhhhhcc---cceeeccCCCChHHHHHhhh
Q psy3450 317 ISLQELCCRAIVAR---TTVYAINQLPLPNLIKSHLK 350 (432)
Q Consensus 317 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 350 (432)
-+|+++|+.+|-.+ .....|++||||..+|..|.
T Consensus 4 ~sL~~LcR~~iR~~lG~~~l~~I~~L~lP~~lk~yLl 40 (42)
T cd03720 4 RSLLSLCRIAVRRALGKQRLSLICSLPLPDPIKKFLL 40 (42)
T ss_pred CCHHHHHHHHHHHHHHHhHhccCcCCCCCHHHHHHHc
Confidence 57899999887544 45678999999999998774
No 498
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.13 E-value=0.043 Score=48.53 Aligned_cols=25 Identities=52% Similarity=0.939 Sum_probs=22.8
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++.+|++++|++++|||+++.++..
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999976
No 499
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.01 E-value=0.033 Score=48.23 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=17.0
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
|+++|.+|+|||||++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l 19 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRL 19 (143)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999997
No 500
>PRK07261 topology modulation protein; Provisional
Probab=94.01 E-value=0.037 Score=50.34 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
||+|+|.+|+|||||.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 7999999999999999987
Done!