Query psy3450
Match_columns 432
No_of_seqs 442 out of 3136
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:00:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.3E-36 2.5E-40 281.0 15.4 166 59-239 12-178 (216)
2 3cbq_A GTP-binding protein REM 100.0 2.4E-30 8.2E-35 238.0 19.3 174 51-239 14-190 (195)
3 2ew1_A RAS-related protein RAB 100.0 3E-30 1E-34 239.0 18.7 172 54-240 20-192 (201)
4 2hup_A RAS-related protein RAB 100.0 2.2E-30 7.5E-35 239.0 17.5 173 52-239 21-195 (201)
5 2fu5_C RAS-related protein RAB 100.0 1.6E-30 5.5E-35 234.4 15.9 169 56-239 4-173 (183)
6 3tw8_B RAS-related protein RAB 100.0 5.6E-30 1.9E-34 229.2 19.0 170 55-239 4-173 (181)
7 2a5j_A RAS-related protein RAB 100.0 5.7E-30 1.9E-34 233.5 18.5 173 52-239 13-186 (191)
8 3tkl_A RAS-related protein RAB 100.0 1.3E-29 4.4E-34 230.6 20.4 172 55-241 11-183 (196)
9 3q3j_B RHO-related GTP-binding 100.0 3.7E-30 1.3E-34 240.1 16.3 170 55-240 22-206 (214)
10 3t5g_A GTP-binding protein RHE 100.0 9.1E-30 3.1E-34 229.1 18.1 166 59-240 5-172 (181)
11 3reg_A RHO-like small GTPase; 100.0 1.3E-29 4.5E-34 231.4 18.9 169 55-239 18-190 (194)
12 1z08_A RAS-related protein RAB 100.0 8.5E-30 2.9E-34 226.0 16.9 166 57-237 3-169 (170)
13 2gf9_A RAS-related protein RAB 100.0 2.4E-29 8.3E-34 228.6 19.8 170 54-238 16-186 (189)
14 1z0f_A RAB14, member RAS oncog 100.0 1.8E-29 6.1E-34 225.5 18.6 167 56-237 11-178 (179)
15 2bcg_Y Protein YP2, GTP-bindin 100.0 2.3E-29 8E-34 231.8 20.0 173 57-244 5-178 (206)
16 1z2a_A RAS-related protein RAB 100.0 1.1E-29 3.6E-34 224.7 16.9 165 58-237 3-167 (168)
17 3c5c_A RAS-like protein 12; GD 100.0 7.6E-30 2.6E-34 232.5 16.4 164 57-237 18-186 (187)
18 3kkq_A RAS-related protein M-R 100.0 1.8E-29 6.2E-34 227.5 18.6 166 56-237 14-182 (183)
19 2bme_A RAB4A, RAS-related prot 100.0 1.6E-29 5.3E-34 228.2 18.0 169 56-239 6-175 (186)
20 2il1_A RAB12; G-protein, GDP, 100.0 1.6E-29 5.6E-34 231.1 17.9 171 52-237 18-190 (192)
21 3q85_A GTP-binding protein REM 100.0 1.6E-29 5.6E-34 224.3 17.4 164 60-238 2-168 (169)
22 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-29 4.7E-34 226.7 16.7 166 58-238 4-174 (178)
23 3dz8_A RAS-related protein RAB 100.0 2.4E-30 8.3E-35 235.9 11.6 173 52-239 15-188 (191)
24 2oil_A CATX-8, RAS-related pro 100.0 2.8E-29 9.7E-34 228.7 18.7 172 52-238 17-189 (193)
25 3q72_A GTP-binding protein RAD 100.0 2.7E-29 9.4E-34 222.2 17.8 162 60-238 2-165 (166)
26 1r2q_A RAS-related protein RAB 100.0 2.3E-29 7.8E-34 222.6 17.1 163 58-235 4-167 (170)
27 2nzj_A GTP-binding protein REM 100.0 4.8E-29 1.7E-33 222.2 19.3 166 59-240 3-172 (175)
28 2g6b_A RAS-related protein RAB 100.0 5E-29 1.7E-33 223.4 19.5 169 56-238 6-175 (180)
29 2efe_B Small GTP-binding prote 100.0 3.8E-29 1.3E-33 224.4 18.7 166 57-237 9-175 (181)
30 1zbd_A Rabphilin-3A; G protein 100.0 5.4E-29 1.8E-33 228.6 19.9 168 56-238 4-172 (203)
31 2q3h_A RAS homolog gene family 100.0 4.4E-29 1.5E-33 228.9 19.0 169 56-240 16-198 (201)
32 2g3y_A GTP-binding protein GEM 100.0 3.9E-29 1.3E-33 234.1 18.6 171 55-239 32-205 (211)
33 3ihw_A Centg3; RAS, centaurin, 100.0 3.8E-29 1.3E-33 227.7 18.1 163 55-239 15-182 (184)
34 1g16_A RAS-related protein SEC 100.0 3.4E-29 1.2E-33 221.9 17.1 164 59-238 2-166 (170)
35 2atx_A Small GTP binding prote 100.0 5E-29 1.7E-33 227.2 18.6 165 57-237 15-193 (194)
36 2fg5_A RAB-22B, RAS-related pr 100.0 2.4E-29 8.3E-34 229.7 16.5 169 54-237 17-186 (192)
37 2o52_A RAS-related protein RAB 100.0 2.5E-29 8.7E-34 231.5 16.7 170 55-239 20-190 (200)
38 1u8z_A RAS-related protein RAL 100.0 3.9E-29 1.3E-33 220.3 17.0 162 60-237 4-167 (168)
39 1z0j_A RAB-22, RAS-related pro 100.0 5.1E-29 1.7E-33 220.7 17.7 164 58-236 4-168 (170)
40 2j0v_A RAC-like GTP-binding pr 100.0 2.3E-29 7.9E-34 232.9 16.1 167 58-240 7-183 (212)
41 2fn4_A P23, RAS-related protei 100.0 5.3E-29 1.8E-33 222.8 17.9 168 57-240 6-175 (181)
42 3cpj_B GTP-binding protein YPT 100.0 4.2E-29 1.5E-33 233.8 17.8 171 56-241 9-180 (223)
43 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-29 7.2E-34 228.3 15.1 164 58-237 5-183 (184)
44 1ek0_A Protein (GTP-binding pr 100.0 4.2E-29 1.5E-33 220.9 16.6 161 60-235 3-167 (170)
45 2bov_A RAla, RAS-related prote 100.0 5.9E-29 2E-33 228.0 17.7 166 58-239 12-179 (206)
46 2iwr_A Centaurin gamma 1; ANK 100.0 3.8E-29 1.3E-33 224.4 16.0 159 59-239 6-171 (178)
47 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-28 4.5E-33 220.1 19.4 166 57-238 4-175 (177)
48 1c1y_A RAS-related protein RAP 100.0 5.4E-29 1.8E-33 219.9 16.5 161 60-236 3-166 (167)
49 1mh1_A RAC1; GTP-binding, GTPa 100.0 1E-28 3.5E-33 222.3 18.5 164 59-238 4-181 (186)
50 3bc1_A RAS-related protein RAB 100.0 1.1E-28 3.7E-33 223.1 18.3 169 56-239 7-187 (195)
51 2p5s_A RAS and EF-hand domain 100.0 5.7E-29 1.9E-33 228.5 16.4 167 56-237 24-197 (199)
52 1z06_A RAS-related protein RAB 100.0 8E-29 2.7E-33 225.2 17.0 167 55-236 15-187 (189)
53 1kao_A RAP2A; GTP-binding prot 100.0 8.3E-29 2.8E-33 218.0 16.4 161 60-236 3-165 (167)
54 1gwn_A RHO-related GTP-binding 100.0 4.3E-29 1.5E-33 231.8 15.1 166 56-237 24-204 (205)
55 2a9k_A RAS-related protein RAL 100.0 1.2E-28 4.1E-33 221.6 17.6 165 58-238 16-182 (187)
56 1x3s_A RAS-related protein RAB 100.0 2.1E-28 7.1E-33 222.2 18.5 167 57-239 12-180 (195)
57 2j1l_A RHO-related GTP-binding 100.0 1.5E-28 5.2E-33 228.9 17.9 166 58-239 32-211 (214)
58 2y8e_A RAB-protein 6, GH09086P 100.0 1.1E-28 3.8E-33 220.3 15.6 163 59-236 13-176 (179)
59 3oes_A GTPase rhebl1; small GT 100.0 5.6E-29 1.9E-33 228.9 14.0 167 58-240 22-190 (201)
60 4dsu_A GTPase KRAS, isoform 2B 100.0 2.8E-28 9.5E-33 220.0 18.3 165 59-240 3-169 (189)
61 2atv_A RERG, RAS-like estrogen 100.0 1.9E-28 6.6E-33 224.2 17.2 165 58-239 26-193 (196)
62 2gco_A H9, RHO-related GTP-bin 100.0 4.1E-28 1.4E-32 223.4 19.4 164 58-237 23-200 (201)
63 1ky3_A GTP-binding protein YPT 100.0 1.8E-28 6E-33 219.6 16.3 168 57-239 5-180 (182)
64 2f7s_A C25KG, RAS-related prot 100.0 7.3E-29 2.5E-33 230.4 13.5 171 54-239 19-201 (217)
65 3bwd_D RAC-like GTP-binding pr 100.0 2.9E-29 1E-33 225.3 10.4 163 59-237 7-181 (182)
66 2cjw_A GTP-binding protein GEM 100.0 4.7E-28 1.6E-32 222.2 18.6 167 58-239 4-174 (192)
67 3clv_A RAB5 protein, putative; 100.0 5.7E-28 2E-32 219.5 19.0 164 58-238 5-205 (208)
68 2erx_A GTP-binding protein DI- 100.0 1.9E-28 6.6E-33 217.1 15.4 162 59-236 2-166 (172)
69 3l0i_B RAS-related protein RAB 100.0 4.5E-30 1.6E-34 235.9 4.6 173 51-238 24-197 (199)
70 2yc2_C IFT27, small RAB-relate 100.0 1.2E-28 4.1E-33 226.0 13.9 168 58-238 18-193 (208)
71 3cph_A RAS-related protein SEC 100.0 5.1E-28 1.8E-32 223.2 17.9 168 56-239 16-184 (213)
72 1vg8_A RAS-related protein RAB 100.0 4.5E-28 1.6E-32 222.6 17.2 168 57-240 5-178 (207)
73 2fv8_A H6, RHO-related GTP-bin 100.0 9.4E-28 3.2E-32 221.9 18.8 165 58-238 23-201 (207)
74 2ce2_X GTPase HRAS; signaling 100.0 1.5E-27 5.2E-32 209.4 18.4 161 60-237 3-165 (166)
75 3con_A GTPase NRAS; structural 100.0 1.8E-27 6.1E-32 216.0 19.0 164 58-238 19-184 (190)
76 3t1o_A Gliding protein MGLA; G 100.0 1E-28 3.6E-33 224.1 10.8 176 56-240 10-195 (198)
77 4djt_A GTP-binding nuclear pro 100.0 8.8E-28 3E-32 223.2 16.6 176 57-247 8-185 (218)
78 4gzl_A RAS-related C3 botulinu 100.0 4.8E-28 1.7E-32 223.8 14.7 162 58-235 28-203 (204)
79 3gj0_A GTP-binding nuclear pro 100.0 5.1E-28 1.8E-32 225.7 13.3 173 55-244 10-182 (221)
80 4bas_A ADP-ribosylation factor 99.9 1.4E-27 4.7E-32 217.7 15.2 169 53-240 10-192 (199)
81 2gf0_A GTP-binding protein DI- 99.9 1.9E-27 6.6E-32 216.8 14.5 164 58-238 6-172 (199)
82 2zej_A Dardarin, leucine-rich 99.9 1.5E-27 5.3E-32 216.5 9.2 166 60-238 2-179 (184)
83 1upt_A ARL1, ADP-ribosylation 99.9 1.8E-26 6.1E-31 204.7 14.9 157 59-237 6-169 (171)
84 1r8s_A ADP-ribosylation factor 99.9 3.9E-27 1.3E-31 207.9 10.2 155 61-237 1-162 (164)
85 3llu_A RAS-related GTP-binding 99.9 4.3E-27 1.5E-31 215.6 10.5 167 52-235 12-195 (196)
86 1f6b_A SAR1; gtpases, N-termin 99.9 2.3E-26 7.7E-31 211.7 15.3 153 60-234 25-196 (198)
87 1m2o_B GTP-binding protein SAR 99.9 4.9E-26 1.7E-30 207.9 15.8 154 59-234 22-189 (190)
88 2wkq_A NPH1-1, RAS-related C3 99.9 6.1E-26 2.1E-30 223.5 17.4 165 57-237 152-330 (332)
89 1zj6_A ADP-ribosylation factor 99.9 7.9E-26 2.7E-30 205.0 16.8 157 59-237 15-178 (187)
90 3th5_A RAS-related C3 botulinu 99.9 2.3E-28 8E-33 225.0 0.0 162 58-235 28-203 (204)
91 2h57_A ADP-ribosylation factor 99.9 6.8E-26 2.3E-30 206.0 16.3 162 55-236 16-186 (190)
92 2f9l_A RAB11B, member RAS onco 99.9 1.4E-25 4.8E-30 206.0 18.1 167 58-239 3-170 (199)
93 1ksh_A ARF-like protein 2; sma 99.9 1.7E-25 6E-30 202.1 18.4 158 58-237 16-180 (186)
94 2h17_A ADP-ribosylation factor 99.9 5.4E-26 1.9E-30 205.3 14.9 159 54-234 15-180 (181)
95 2b6h_A ADP-ribosylation factor 99.9 2.1E-26 7.2E-31 210.7 12.0 158 58-237 27-191 (192)
96 2x77_A ADP-ribosylation factor 99.9 4.1E-26 1.4E-30 207.0 13.8 159 58-238 20-185 (189)
97 1zd9_A ADP-ribosylation factor 99.9 1E-26 3.5E-31 211.5 9.7 160 57-237 19-185 (188)
98 1fzq_A ADP-ribosylation factor 99.9 5.7E-26 2E-30 205.7 14.1 158 58-237 14-178 (181)
99 1oix_A RAS-related protein RAB 99.9 3.8E-25 1.3E-29 202.4 18.0 165 56-235 25-190 (191)
100 3iev_A GTP-binding protein ERA 99.9 5.4E-26 1.8E-30 224.5 12.8 206 57-317 7-224 (308)
101 1moz_A ARL1, ADP-ribosylation 99.9 2.9E-25 9.8E-30 199.6 16.1 159 58-238 16-181 (183)
102 3c5h_A Glucocorticoid receptor 99.9 5.5E-26 1.9E-30 218.3 8.6 175 52-235 11-253 (255)
103 2hjg_A GTP-binding protein ENG 99.9 2.3E-24 7.7E-29 222.6 17.4 223 57-317 172-410 (436)
104 2wji_A Ferrous iron transport 99.9 2.1E-24 7.3E-29 192.3 14.0 153 60-235 3-163 (165)
105 4dcu_A GTP-binding protein ENG 99.9 9.3E-24 3.2E-28 219.2 18.9 224 56-317 191-430 (456)
106 3r7w_B Gtpase2, GTP-binding pr 99.9 3.4E-25 1.2E-29 219.5 6.3 157 62-237 1-174 (331)
107 2fh5_B SR-beta, signal recogni 99.9 8.2E-25 2.8E-29 202.5 8.3 159 58-234 5-213 (214)
108 2qu8_A Putative nucleolar GTP- 99.9 4.4E-23 1.5E-27 193.7 19.4 164 58-239 27-207 (228)
109 3o47_A ADP-ribosylation factor 99.9 5E-24 1.7E-28 212.3 13.3 157 59-237 164-327 (329)
110 3r7w_A Gtpase1, GTP-binding pr 99.9 9.7E-24 3.3E-28 208.2 14.7 160 59-235 2-179 (307)
111 1wf3_A GTP-binding protein; GT 99.9 2.1E-24 7.2E-29 212.6 8.8 198 60-317 7-216 (301)
112 2lkc_A Translation initiation 99.9 9.4E-23 3.2E-27 182.1 16.3 158 58-238 6-172 (178)
113 2cxx_A Probable GTP-binding pr 99.9 1E-23 3.6E-28 190.3 9.8 155 61-239 2-186 (190)
114 2wjg_A FEOB, ferrous iron tran 99.9 3.8E-23 1.3E-27 186.7 12.4 157 59-238 6-170 (188)
115 3lvq_E ARF-GAP with SH3 domain 99.9 2E-23 6.8E-28 218.5 11.5 161 58-240 320-487 (497)
116 1svi_A GTP-binding protein YSX 99.9 9.8E-23 3.4E-27 185.1 13.2 157 58-235 21-193 (195)
117 2gj8_A MNME, tRNA modification 99.9 6.2E-23 2.1E-27 184.5 11.2 153 60-236 4-165 (172)
118 2dyk_A GTP-binding protein; GT 99.9 1.5E-22 5.2E-27 177.5 10.8 151 61-235 2-160 (161)
119 3dpu_A RAB family protein; roc 99.9 8.1E-23 2.8E-27 216.1 9.2 165 57-239 38-210 (535)
120 1ega_A Protein (GTP-binding pr 99.9 3.6E-22 1.2E-26 196.5 9.7 201 60-318 8-218 (301)
121 3a1s_A Iron(II) transport prot 99.9 1.4E-21 4.8E-26 188.2 13.1 155 59-236 4-166 (258)
122 3pqc_A Probable GTP-binding pr 99.9 3.8E-21 1.3E-25 173.9 14.6 157 57-237 20-194 (195)
123 3b1v_A Ferrous iron uptake tra 99.9 7.9E-22 2.7E-26 191.5 10.7 153 59-235 2-162 (272)
124 1mky_A Probable GTP-binding pr 99.8 2.3E-20 7.8E-25 192.8 17.4 217 58-316 178-411 (439)
125 4dhe_A Probable GTP-binding pr 99.8 1.2E-20 4E-25 175.4 13.3 162 58-237 27-211 (223)
126 3iby_A Ferrous iron transport 99.8 3E-21 1E-25 185.7 8.2 151 61-234 2-164 (256)
127 1nrj_B SR-beta, signal recogni 99.8 2.2E-21 7.6E-26 179.9 5.6 146 57-223 9-170 (218)
128 3k53_A Ferrous iron transport 99.8 3.5E-20 1.2E-24 179.1 13.1 156 60-237 3-166 (271)
129 3gee_A MNME, tRNA modification 99.8 9.3E-20 3.2E-24 190.0 15.4 158 59-236 232-397 (476)
130 3i8s_A Ferrous iron transport 99.8 1.5E-20 5.2E-25 182.4 8.0 154 60-236 3-168 (274)
131 2e87_A Hypothetical protein PH 99.8 4.4E-19 1.5E-23 178.3 16.3 161 58-237 165-336 (357)
132 3qq5_A Small GTP-binding prote 99.8 4.2E-20 1.4E-24 189.7 8.6 161 56-238 30-197 (423)
133 1xzp_A Probable tRNA modificat 99.8 6.9E-19 2.3E-23 183.6 15.7 154 60-237 243-405 (482)
134 1lnz_A SPO0B-associated GTP-bi 99.8 3E-19 1E-23 178.7 9.9 157 61-237 159-330 (342)
135 3ohm_A Guanine nucleotide-bind 99.8 1.1E-18 3.9E-23 173.2 12.4 127 111-239 156-320 (327)
136 1mky_A Probable GTP-binding pr 99.8 2.2E-18 7.4E-23 178.0 13.6 155 61-238 2-167 (439)
137 3sjy_A Translation initiation 99.8 2.4E-17 8.1E-22 168.4 18.8 174 57-236 5-191 (403)
138 2qag_A Septin-2, protein NEDD5 99.7 5.3E-19 1.8E-23 178.2 5.9 172 57-238 34-234 (361)
139 3geh_A MNME, tRNA modification 99.7 1.6E-18 5.5E-23 180.0 9.1 154 59-237 223-384 (462)
140 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-18 7E-23 167.0 9.3 167 58-235 6-202 (274)
141 4fid_A G protein alpha subunit 99.7 3.8E-18 1.3E-22 170.1 10.7 124 112-237 151-328 (340)
142 3p26_A Elongation factor 1 alp 99.7 4.6E-18 1.6E-22 177.6 11.8 163 58-227 31-228 (483)
143 3lxx_A GTPase IMAP family memb 99.7 2.3E-17 8E-22 155.9 15.3 165 56-237 25-214 (239)
144 2qtf_A Protein HFLX, GTP-bindi 99.7 2.9E-17 9.8E-22 165.7 16.2 159 62-238 181-355 (364)
145 3cb4_D GTP-binding protein LEP 99.7 1.9E-17 6.6E-22 176.7 15.5 170 59-236 3-181 (599)
146 2ywe_A GTP-binding protein LEP 99.7 3.8E-17 1.3E-21 174.3 15.5 169 58-236 4-183 (600)
147 1s0u_A EIF-2-gamma, translatio 99.7 8.7E-17 3E-21 164.4 17.1 166 58-236 6-197 (408)
148 2xtp_A GTPase IMAP family memb 99.7 1.9E-17 6.5E-22 158.3 11.3 165 58-238 20-209 (260)
149 2hjg_A GTP-binding protein ENG 99.7 3.2E-18 1.1E-22 176.6 5.6 153 61-237 4-165 (436)
150 2ged_A SR-beta, signal recogni 99.7 9.5E-18 3.3E-22 152.0 7.2 118 58-196 46-173 (193)
151 2c78_A Elongation factor TU-A; 99.7 1.4E-17 4.6E-22 170.2 8.7 168 58-235 9-210 (405)
152 3j2k_7 ERF3, eukaryotic polype 99.7 5.1E-17 1.7E-21 167.8 13.1 164 57-229 14-217 (439)
153 2aka_B Dynamin-1; fusion prote 99.7 7.2E-19 2.5E-23 171.0 -0.8 109 124-234 125-250 (299)
154 1kk1_A EIF2gamma; initiation o 99.7 1.3E-16 4.6E-21 163.1 15.8 167 57-236 7-199 (410)
155 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-17 4.2E-22 164.1 7.7 134 75-233 32-169 (301)
156 1cip_A Protein (guanine nucleo 99.7 3.3E-17 1.1E-21 164.5 10.0 127 111-239 182-346 (353)
157 1wb1_A Translation elongation 99.7 8.2E-17 2.8E-21 168.1 13.4 166 58-236 17-188 (482)
158 3lxw_A GTPase IMAP family memb 99.7 2.5E-16 8.5E-21 150.3 15.0 163 58-237 19-208 (247)
159 2xtz_A Guanine nucleotide-bind 99.7 3.9E-17 1.3E-21 164.0 9.3 125 114-238 169-346 (354)
160 1d2e_A Elongation factor TU (E 99.7 5.4E-17 1.9E-21 165.4 9.7 166 60-235 3-193 (397)
161 2elf_A Protein translation elo 99.7 1.4E-16 4.6E-21 161.1 12.3 146 62-237 23-180 (370)
162 2qnr_A Septin-2, protein NEDD5 99.7 2.7E-17 9.4E-22 161.7 6.6 172 57-238 15-215 (301)
163 1jny_A EF-1-alpha, elongation 99.7 1.2E-17 4.2E-22 172.2 3.3 163 59-229 5-205 (435)
164 1zun_B Sulfate adenylate trans 99.7 7.5E-17 2.6E-21 166.2 8.8 168 58-229 22-216 (434)
165 1azs_C GS-alpha; complex (lyas 99.7 1.7E-16 6E-21 161.5 10.7 125 112-238 207-386 (402)
166 3izy_P Translation initiation 99.7 5.5E-18 1.9E-22 178.5 -0.6 158 60-236 4-167 (537)
167 3tr5_A RF-3, peptide chain rel 99.7 3.4E-16 1.1E-20 165.1 12.8 126 58-193 11-148 (528)
168 1pui_A ENGB, probable GTP-bind 99.6 7.3E-16 2.5E-20 141.5 12.6 155 58-235 24-197 (210)
169 4dcu_A GTP-binding protein ENG 99.6 5.6E-17 1.9E-21 168.2 5.5 154 60-237 23-185 (456)
170 1zcb_A G alpha I/13; GTP-bindi 99.6 2.1E-16 7.2E-21 159.2 8.8 126 112-239 191-355 (362)
171 1r5b_A Eukaryotic peptide chai 99.6 9.5E-17 3.2E-21 167.0 6.1 170 58-229 41-244 (467)
172 3avx_A Elongation factor TS, e 99.6 5.6E-16 1.9E-20 173.4 12.1 169 57-235 293-484 (1289)
173 3izq_1 HBS1P, elongation facto 99.6 2.2E-16 7.4E-21 169.3 7.2 163 58-228 165-363 (611)
174 1g7s_A Translation initiation 99.6 1.7E-15 5.7E-20 161.7 12.4 166 60-237 5-218 (594)
175 1f60_A Elongation factor EEF1A 99.6 5.1E-16 1.7E-20 161.1 6.1 160 59-227 6-202 (458)
176 1jwy_B Dynamin A GTPase domain 99.6 1.2E-15 4E-20 149.6 8.1 111 124-236 131-261 (315)
177 1zo1_I IF2, translation initia 99.6 1.2E-16 4E-21 167.1 0.5 154 60-233 4-163 (501)
178 3t34_A Dynamin-related protein 99.6 2.9E-15 9.8E-20 150.5 8.6 109 124-234 136-258 (360)
179 3mca_A HBS1, elongation factor 99.6 1.2E-15 4.1E-20 163.0 6.1 160 57-225 174-371 (592)
180 2j69_A Bacterial dynamin-like 99.6 5.9E-15 2E-19 160.5 11.2 111 125-237 175-325 (695)
181 1wxq_A GTP-binding protein; st 99.6 4.9E-16 1.7E-20 158.4 2.2 91 61-160 1-114 (397)
182 1udx_A The GTP-binding protein 99.6 3.1E-14 1.1E-18 145.8 15.4 159 62-239 159-327 (416)
183 3def_A T7I23.11 protein; chlor 99.6 2.7E-14 9.3E-19 137.1 14.1 125 59-200 35-172 (262)
184 2qag_C Septin-7; cell cycle, c 99.6 3.4E-15 1.2E-19 152.9 8.2 170 56-235 27-225 (418)
185 2dy1_A Elongation factor G; tr 99.5 2.1E-14 7.2E-19 155.5 13.3 130 58-192 7-139 (665)
186 1h65_A Chloroplast outer envel 99.5 3.4E-14 1.2E-18 136.8 12.8 127 58-201 37-176 (270)
187 1dar_A EF-G, elongation factor 99.5 7.1E-14 2.4E-18 151.9 15.4 132 57-193 9-143 (691)
188 2h5e_A Peptide chain release f 99.5 1.3E-13 4.3E-18 145.5 13.6 128 58-193 11-148 (529)
189 2xex_A Elongation factor G; GT 99.5 4.1E-13 1.4E-17 146.0 17.6 132 57-193 7-141 (693)
190 2hf9_A Probable hydrogenase ni 99.5 6.7E-16 2.3E-20 143.7 -6.0 58 180-237 165-224 (226)
191 2wsm_A Hydrogenase expression/ 99.5 5.3E-14 1.8E-18 130.4 6.6 104 124-237 109-214 (221)
192 2rdo_7 EF-G, elongation factor 99.5 9.2E-13 3.2E-17 143.4 17.0 133 58-193 8-148 (704)
193 2x2e_A Dynamin-1; nitration, h 99.4 1.5E-14 5.2E-19 144.9 1.4 108 124-233 130-254 (353)
194 2qpt_A EH domain-containing pr 99.4 7.2E-14 2.5E-18 148.1 4.1 67 125-193 155-232 (550)
195 2yv5_A YJEQ protein; hydrolase 99.4 1.1E-12 3.8E-17 128.8 10.0 97 134-232 66-164 (302)
196 1jal_A YCHF protein; nucleotid 99.4 3.4E-12 1.1E-16 128.2 13.1 145 61-220 3-240 (363)
197 3p32_A Probable GTPase RV1496/ 99.4 1.9E-13 6.7E-18 137.1 3.2 104 124-237 172-284 (355)
198 1n0u_A EF-2, elongation factor 99.3 5.2E-12 1.8E-16 140.0 13.5 132 58-192 17-163 (842)
199 3zvr_A Dynamin-1; hydrolase, D 99.3 5.9E-13 2E-17 144.9 4.9 144 125-312 151-315 (772)
200 1yrb_A ATP(GTP)binding protein 99.3 7.4E-12 2.5E-16 119.0 11.7 111 124-237 109-257 (262)
201 2dby_A GTP-binding protein; GD 99.3 8.8E-12 3E-16 125.7 9.3 158 61-233 2-258 (368)
202 2www_A Methylmalonic aciduria 99.2 9.8E-12 3.4E-16 124.5 6.4 101 124-235 167-277 (349)
203 2p67_A LAO/AO transport system 99.1 5.8E-12 2E-16 125.7 1.5 103 124-236 149-260 (341)
204 3vqt_A RF-3, peptide chain rel 99.1 1.1E-09 3.7E-14 115.9 14.7 123 58-192 29-165 (548)
205 4a9a_A Ribosome-interacting GT 99.0 3.5E-09 1.2E-13 106.8 15.6 153 58-229 70-240 (376)
206 2qm8_A GTPase/ATPase; G protei 99.0 3.9E-10 1.3E-14 112.3 8.2 102 124-235 148-259 (337)
207 3l82_B F-box only protein 4; T 98.9 6E-10 2.1E-14 103.1 5.8 104 131-237 109-223 (227)
208 3j25_A Tetracycline resistance 98.9 9.9E-10 3.4E-14 118.3 6.4 122 61-192 3-132 (638)
209 4fn5_A EF-G 1, elongation fact 98.8 3.6E-08 1.2E-12 107.4 14.2 132 58-192 11-150 (709)
210 3h2y_A GTPase family protein; 98.8 6.9E-09 2.4E-13 104.5 7.8 97 133-235 55-158 (368)
211 3l2o_B F-box only protein 4; s 98.8 6.3E-09 2.1E-13 100.7 6.5 106 131-238 194-309 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 8.9E-08 3.1E-12 97.1 12.8 87 59-159 19-127 (392)
213 2ohf_A Protein OLA1, GTP-bindi 98.7 7.3E-09 2.5E-13 105.0 4.7 92 59-165 21-134 (396)
214 3ec1_A YQEH GTPase; atnos1, at 98.7 1.6E-08 5.5E-13 101.8 5.8 97 133-235 57-160 (369)
215 1puj_A YLQF, conserved hypothe 98.4 6.6E-07 2.2E-11 86.7 8.2 99 130-237 5-106 (282)
216 2j37_W Signal recognition part 98.3 1E-06 3.5E-11 92.0 7.5 101 124-234 184-310 (504)
217 2qag_B Septin-6, protein NEDD5 98.0 8.3E-06 2.9E-10 83.3 8.0 149 56-219 38-218 (427)
218 3ec1_A YQEH GTPase; atnos1, at 98.0 1.4E-06 4.9E-11 87.5 1.8 145 61-223 163-317 (369)
219 1tq4_A IIGP1, interferon-induc 98.0 5.3E-05 1.8E-09 77.2 12.4 158 60-235 69-251 (413)
220 3sop_A Neuronal-specific septi 97.9 3.6E-05 1.2E-09 73.9 10.2 24 59-82 1-24 (270)
221 3h2y_A GTPase family protein; 97.8 1.1E-06 3.7E-11 88.4 -2.3 141 61-218 161-311 (368)
222 3cnl_A YLQF, putative uncharac 97.7 2.2E-05 7.4E-10 75.1 4.9 91 132-234 5-98 (262)
223 2jz3_A Suppressor of cytokine 97.7 1.3E-05 4.6E-10 54.1 2.1 37 316-353 1-37 (40)
224 2v3c_C SRP54, signal recogniti 97.7 1.1E-05 3.8E-10 82.7 2.0 91 123-225 180-278 (432)
225 1t9h_A YLOQ, probable GTPase E 97.6 3.6E-05 1.2E-09 75.4 3.8 91 138-230 77-170 (307)
226 3dm5_A SRP54, signal recogniti 97.4 0.00093 3.2E-08 68.5 11.6 92 124-226 183-280 (443)
227 1puj_A YLQF, conserved hypothe 97.4 0.00016 5.4E-09 69.9 5.4 24 58-81 118-141 (282)
228 3cnl_A YLQF, putative uncharac 97.3 6.7E-05 2.3E-09 71.7 2.1 21 61-81 100-120 (262)
229 2rcn_A Probable GTPase ENGC; Y 97.2 0.00092 3.1E-08 66.7 9.4 85 144-231 127-213 (358)
230 1j8m_F SRP54, signal recogniti 97.1 0.0012 4E-08 64.2 8.1 93 123-227 180-281 (297)
231 3kl4_A SRP54, signal recogniti 97.0 0.0018 6E-08 66.3 8.6 91 123-224 179-277 (433)
232 4dkx_A RAS-related protein RAB 96.7 0.00072 2.4E-08 62.5 2.8 49 13-67 10-58 (216)
233 4dzz_A Plasmid partitioning pr 96.6 0.0033 1.1E-07 56.3 7.1 85 123-214 75-162 (206)
234 1f5n_A Interferon-induced guan 96.6 0.0016 5.6E-08 69.0 5.4 25 58-82 36-60 (592)
235 1bif_A 6-phosphofructo-2-kinas 96.6 0.00046 1.6E-08 71.3 0.8 99 59-176 38-148 (469)
236 3e70_C DPA, signal recognition 96.4 0.005 1.7E-07 60.6 7.2 92 125-227 213-310 (328)
237 3szr_A Interferon-induced GTP- 96.3 0.0043 1.5E-07 66.2 6.3 19 62-80 47-65 (608)
238 2ew1_A RAS-related protein RAB 95.9 0.0047 1.6E-07 55.8 3.7 34 5-38 15-48 (201)
239 3dz8_A RAS-related protein RAB 95.8 0.0054 1.8E-07 54.3 3.6 31 8-38 15-45 (191)
240 2c9w_A Suppressor of cytokine 95.7 0.0034 1.2E-07 55.8 2.0 46 304-353 121-166 (169)
241 2izv_A Suppressor of cytokine 95.7 0.0025 8.5E-08 57.8 0.9 40 317-356 137-176 (187)
242 2oil_A CATX-8, RAS-related pro 95.5 0.0088 3E-07 52.8 3.7 31 8-38 17-47 (193)
243 3l0i_B RAS-related protein RAB 95.4 0.0071 2.4E-07 54.0 2.8 35 4-38 21-55 (199)
244 3q5d_A Atlastin-1; G protein, 95.0 0.017 5.8E-07 59.2 4.8 25 58-82 65-89 (447)
245 1z0f_A RAB14, member RAS oncog 95.0 0.017 5.8E-07 49.8 4.0 27 12-38 11-37 (179)
246 3tkl_A RAS-related protein RAB 95.0 0.015 5.2E-07 51.1 3.7 33 6-38 6-38 (196)
247 3tw8_B RAS-related protein RAB 94.9 0.012 4.1E-07 50.8 2.8 30 9-38 2-31 (181)
248 2xxa_A Signal recognition part 94.9 0.29 1E-05 49.8 13.6 84 123-216 183-273 (433)
249 2gf9_A RAS-related protein RAB 94.9 0.018 6.2E-07 50.6 4.1 29 10-38 16-44 (189)
250 2fu5_C RAS-related protein RAB 94.8 0.015 5E-07 50.7 3.1 28 11-38 3-30 (183)
251 2f7s_A C25KG, RAS-related prot 94.8 0.011 3.8E-07 53.3 2.3 35 4-38 13-47 (217)
252 1oix_A RAS-related protein RAB 94.7 0.021 7.1E-07 50.7 3.8 33 6-38 19-51 (191)
253 2hup_A RAS-related protein RAB 94.7 0.018 6E-07 51.6 3.3 32 7-38 20-51 (201)
254 2a5j_A RAS-related protein RAB 94.6 0.024 8.1E-07 50.0 4.0 29 10-38 15-43 (191)
255 2bme_A RAB4A, RAS-related prot 94.5 0.025 8.6E-07 49.2 3.8 28 11-38 5-32 (186)
256 2bcg_Y Protein YP2, GTP-bindin 94.4 0.028 9.5E-07 50.1 4.0 27 12-38 4-30 (206)
257 3cpj_B GTP-binding protein YPT 94.3 0.025 8.7E-07 51.4 3.6 27 12-38 9-35 (223)
258 1kgd_A CASK, peripheral plasma 94.1 0.021 7.3E-07 50.5 2.4 19 62-80 7-25 (180)
259 3cbq_A GTP-binding protein REM 94.0 0.026 8.8E-07 50.4 2.9 27 12-38 19-45 (195)
260 2o52_A RAS-related protein RAB 94.0 0.03 1E-06 50.0 3.2 29 10-38 19-47 (200)
261 1ye8_A Protein THEP1, hypothet 93.9 0.024 8.3E-07 50.5 2.5 19 62-80 2-20 (178)
262 4bas_A ADP-ribosylation factor 93.9 0.09 3.1E-06 46.1 6.3 29 10-38 11-39 (199)
263 3kkq_A RAS-related protein M-R 93.9 0.036 1.2E-06 48.2 3.5 27 12-38 14-40 (183)
264 2y8e_A RAB-protein 6, GH09086P 93.7 0.039 1.3E-06 47.4 3.5 24 15-38 13-36 (179)
265 1z06_A RAS-related protein RAB 93.7 0.045 1.6E-06 48.0 3.8 30 9-38 13-42 (189)
266 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.04 1.4E-06 47.4 3.4 28 11-38 2-29 (177)
267 2il1_A RAB12; G-protein, GDP, 93.6 0.031 1.1E-06 49.4 2.7 30 9-38 19-48 (192)
268 1lvg_A Guanylate kinase, GMP k 93.6 0.029 9.9E-07 50.6 2.4 19 62-80 6-24 (198)
269 1zbd_A Rabphilin-3A; G protein 93.6 0.044 1.5E-06 48.6 3.6 27 12-38 4-30 (203)
270 1vg8_A RAS-related protein RAB 93.6 0.042 1.4E-06 48.7 3.4 27 12-38 4-30 (207)
271 2chg_A Replication factor C sm 93.5 0.037 1.3E-06 49.1 2.9 18 63-80 41-58 (226)
272 1gwn_A RHO-related GTP-binding 93.3 0.039 1.3E-06 49.7 2.9 31 8-38 19-50 (205)
273 3gj0_A GTP-binding nuclear pro 93.3 0.057 2E-06 48.7 3.9 27 12-38 11-37 (221)
274 3bc1_A RAS-related protein RAB 93.2 0.06 2E-06 46.8 3.8 27 12-38 7-33 (195)
275 1g16_A RAS-related protein SEC 93.1 0.054 1.9E-06 46.0 3.3 25 14-38 1-25 (170)
276 3a00_A Guanylate kinase, GMP k 93.0 0.041 1.4E-06 48.8 2.5 18 63-80 4-21 (186)
277 1z08_A RAS-related protein RAB 93.0 0.065 2.2E-06 45.6 3.6 26 13-38 3-28 (170)
278 3ney_A 55 kDa erythrocyte memb 93.0 0.041 1.4E-06 50.1 2.4 20 62-81 21-40 (197)
279 3tr0_A Guanylate kinase, GMP k 92.9 0.042 1.4E-06 49.0 2.4 19 62-80 9-27 (205)
280 1ex7_A Guanylate kinase; subst 92.9 0.043 1.5E-06 49.4 2.4 19 63-81 4-22 (186)
281 2p5s_A RAS and EF-hand domain 92.8 0.05 1.7E-06 48.3 2.7 27 12-38 24-50 (199)
282 1zp6_A Hypothetical protein AT 92.7 0.042 1.5E-06 48.4 2.1 19 62-80 11-29 (191)
283 1z2a_A RAS-related protein RAB 92.7 0.08 2.7E-06 44.8 3.8 25 14-38 3-27 (168)
284 4gp7_A Metallophosphoesterase; 92.6 0.047 1.6E-06 47.9 2.2 19 62-80 11-29 (171)
285 2fg5_A RAB-22B, RAS-related pr 92.6 0.074 2.5E-06 46.8 3.5 27 12-38 19-45 (192)
286 1znw_A Guanylate kinase, GMP k 92.6 0.05 1.7E-06 49.1 2.4 19 62-80 22-40 (207)
287 2g3y_A GTP-binding protein GEM 92.5 0.068 2.3E-06 48.7 3.3 27 12-38 33-59 (211)
288 3tau_A Guanylate kinase, GMP k 92.5 0.051 1.8E-06 49.2 2.4 19 62-80 10-28 (208)
289 1s96_A Guanylate kinase, GMP k 92.5 0.052 1.8E-06 50.0 2.4 20 62-81 18-37 (219)
290 3c5c_A RAS-like protein 12; GD 92.5 0.071 2.4E-06 46.9 3.2 26 13-38 18-43 (187)
291 1z6g_A Guanylate kinase; struc 92.4 0.053 1.8E-06 49.6 2.4 19 62-80 25-43 (218)
292 1ky3_A GTP-binding protein YPT 92.4 0.076 2.6E-06 45.6 3.2 27 12-38 4-30 (182)
293 3kb2_A SPBC2 prophage-derived 92.3 0.058 2E-06 46.4 2.5 19 62-80 3-21 (173)
294 2qor_A Guanylate kinase; phosp 92.3 0.057 1.9E-06 48.6 2.4 19 62-80 14-32 (204)
295 3uc9_A Increased recombination 92.3 0.15 5.1E-06 47.5 5.2 21 62-82 29-51 (233)
296 3lw7_A Adenylate kinase relate 92.2 0.06 2.1E-06 46.0 2.4 19 62-80 3-21 (179)
297 3c8u_A Fructokinase; YP_612366 92.1 0.064 2.2E-06 48.4 2.5 22 59-80 21-42 (208)
298 3clv_A RAB5 protein, putative; 92.1 0.094 3.2E-06 45.7 3.5 49 13-67 4-52 (208)
299 1kag_A SKI, shikimate kinase I 92.0 0.067 2.3E-06 46.3 2.4 19 62-80 6-24 (173)
300 3ihw_A Centg3; RAS, centaurin, 92.0 0.094 3.2E-06 46.1 3.4 25 14-38 18-42 (184)
301 2fn4_A P23, RAS-related protei 91.9 0.11 3.7E-06 44.6 3.7 26 13-38 6-31 (181)
302 2f9l_A RAB11B, member RAS onco 91.9 0.1 3.6E-06 46.2 3.7 25 14-38 3-27 (199)
303 1x3s_A RAS-related protein RAB 91.9 0.096 3.3E-06 45.7 3.3 27 12-38 11-37 (195)
304 2bdt_A BH3686; alpha-beta prot 91.8 0.072 2.5E-06 47.0 2.4 19 62-80 4-22 (189)
305 1ly1_A Polynucleotide kinase; 91.8 0.073 2.5E-06 46.1 2.4 19 62-80 4-22 (181)
306 3fb4_A Adenylate kinase; psych 91.7 0.076 2.6E-06 47.9 2.6 20 61-80 1-20 (216)
307 2j41_A Guanylate kinase; GMP, 91.7 0.073 2.5E-06 47.3 2.4 19 62-80 8-26 (207)
308 1z0j_A RAB-22, RAS-related pro 91.7 0.11 3.7E-06 44.0 3.4 26 13-38 3-28 (170)
309 3reg_A RHO-like small GTPase; 91.6 0.094 3.2E-06 46.1 3.0 28 11-38 18-45 (194)
310 1t9h_A YLOQ, probable GTPase E 91.6 0.056 1.9E-06 52.6 1.6 19 62-80 175-193 (307)
311 3dl0_A Adenylate kinase; phosp 91.6 0.08 2.7E-06 47.8 2.6 20 61-80 1-20 (216)
312 1r2q_A RAS-related protein RAB 91.6 0.11 3.6E-06 44.0 3.2 25 14-38 4-28 (170)
313 2cdn_A Adenylate kinase; phosp 91.5 0.093 3.2E-06 46.8 2.9 24 57-80 17-40 (201)
314 2bbw_A Adenylate kinase 4, AK4 91.5 0.085 2.9E-06 48.9 2.7 20 61-80 28-47 (246)
315 1knq_A Gluconate kinase; ALFA/ 91.5 0.11 3.7E-06 45.2 3.2 20 61-80 9-28 (175)
316 2efe_B Small GTP-binding prote 91.4 0.14 4.6E-06 44.1 3.8 27 12-38 8-34 (181)
317 2atx_A Small GTP binding prote 91.3 0.13 4.4E-06 45.1 3.6 25 14-38 16-40 (194)
318 2rcn_A Probable GTPase ENGC; Y 91.2 0.083 2.8E-06 52.5 2.4 19 62-80 217-235 (358)
319 4eun_A Thermoresistant glucoki 91.2 0.088 3E-06 47.1 2.4 20 61-80 30-49 (200)
320 1qhx_A CPT, protein (chloramph 91.2 0.091 3.1E-06 45.6 2.4 19 62-80 5-23 (178)
321 2hxs_A RAB-26, RAS-related pro 91.2 0.12 4.1E-06 44.3 3.2 24 15-38 5-28 (178)
322 2gco_A H9, RHO-related GTP-bin 91.1 0.18 6.2E-06 44.7 4.4 24 15-38 24-47 (201)
323 1htw_A HI0065; nucleotide-bind 91.1 0.097 3.3E-06 45.7 2.4 19 62-80 35-53 (158)
324 2gf0_A GTP-binding protein DI- 91.0 0.13 4.4E-06 45.1 3.3 29 10-38 2-30 (199)
325 1m7b_A RND3/RHOE small GTP-bin 91.0 0.11 3.9E-06 45.2 2.9 26 13-38 4-29 (184)
326 2jaq_A Deoxyguanosine kinase; 91.0 0.099 3.4E-06 46.2 2.5 19 62-80 2-20 (205)
327 3ec2_A DNA replication protein 91.0 0.094 3.2E-06 45.9 2.3 19 62-80 40-58 (180)
328 3tif_A Uncharacterized ABC tra 91.0 0.094 3.2E-06 48.7 2.4 19 62-80 33-51 (235)
329 3vaa_A Shikimate kinase, SK; s 91.0 0.1 3.6E-06 46.6 2.7 20 61-80 26-45 (199)
330 2qz4_A Paraplegin; AAA+, SPG7, 91.0 0.24 8.3E-06 45.6 5.3 20 61-80 40-59 (262)
331 1nks_A Adenylate kinase; therm 90.9 0.1 3.6E-06 45.6 2.6 19 62-80 3-21 (194)
332 3t61_A Gluconokinase; PSI-biol 90.9 0.098 3.4E-06 46.7 2.4 20 61-80 19-38 (202)
333 4djt_A GTP-binding nuclear pro 90.9 0.12 4.2E-06 46.3 3.1 29 10-38 5-33 (218)
334 2yv5_A YJEQ protein; hydrolase 90.9 0.095 3.3E-06 50.6 2.4 19 62-80 167-185 (302)
335 2ehv_A Hypothetical protein PH 90.7 0.1 3.6E-06 47.7 2.4 19 62-80 32-50 (251)
336 1u0l_A Probable GTPase ENGC; p 90.7 0.1 3.5E-06 50.3 2.4 19 62-80 171-189 (301)
337 1ek0_A Protein (GTP-binding pr 90.7 0.14 4.9E-06 43.2 3.2 23 16-38 3-25 (170)
338 2g6b_A RAS-related protein RAB 90.6 0.19 6.4E-06 43.1 3.9 29 10-38 4-32 (180)
339 3cph_A RAS-related protein SEC 90.6 0.17 5.8E-06 44.9 3.7 27 12-38 16-42 (213)
340 1kht_A Adenylate kinase; phosp 90.5 0.12 4.2E-06 45.1 2.7 20 61-80 4-23 (192)
341 2i3b_A HCR-ntpase, human cance 90.5 0.1 3.5E-06 46.9 2.1 19 62-80 3-21 (189)
342 3trf_A Shikimate kinase, SK; a 90.4 0.13 4.4E-06 45.0 2.7 20 61-80 6-25 (185)
343 1jbk_A CLPB protein; beta barr 90.4 0.12 4E-06 44.6 2.4 19 62-80 45-63 (195)
344 3asz_A Uridine kinase; cytidin 90.4 0.13 4.3E-06 46.2 2.7 20 61-80 7-26 (211)
345 3uie_A Adenylyl-sulfate kinase 90.4 0.12 4E-06 46.3 2.4 20 61-80 26-45 (200)
346 1sxj_E Activator 1 40 kDa subu 90.4 0.44 1.5E-05 46.1 6.8 18 63-80 39-56 (354)
347 2pcj_A ABC transporter, lipopr 90.4 0.1 3.6E-06 48.0 2.1 19 62-80 32-50 (224)
348 2f1r_A Molybdopterin-guanine d 90.4 0.1 3.4E-06 46.2 1.9 19 62-80 4-22 (171)
349 2if2_A Dephospho-COA kinase; a 90.4 0.11 3.8E-06 46.3 2.3 20 61-80 2-21 (204)
350 1cke_A CK, MSSA, protein (cyti 90.3 0.13 4.4E-06 46.6 2.7 20 61-80 6-25 (227)
351 2j0v_A RAC-like GTP-binding pr 90.3 0.2 6.8E-06 44.6 3.9 24 15-38 8-31 (212)
352 3co5_A Putative two-component 90.3 0.25 8.5E-06 41.8 4.3 19 62-80 29-47 (143)
353 3q85_A GTP-binding protein REM 90.3 0.13 4.4E-06 43.7 2.5 23 16-38 2-24 (169)
354 3lnc_A Guanylate kinase, GMP k 90.3 0.084 2.9E-06 48.3 1.3 19 62-80 29-47 (231)
355 1np6_A Molybdopterin-guanine d 90.2 0.12 4.2E-06 45.8 2.4 19 62-80 8-26 (174)
356 3cm0_A Adenylate kinase; ATP-b 90.2 0.15 5E-06 44.6 2.9 20 61-80 5-24 (186)
357 4a74_A DNA repair and recombin 90.2 0.11 3.8E-06 46.8 2.2 19 62-80 27-45 (231)
358 3q3j_B RHO-related GTP-binding 90.1 0.13 4.4E-06 46.4 2.5 25 14-38 25-49 (214)
359 2iwr_A Centaurin gamma 1; ANK 90.1 0.13 4.6E-06 44.1 2.5 24 15-38 6-29 (178)
360 2rhm_A Putative kinase; P-loop 90.0 0.16 5.5E-06 44.5 3.0 20 61-80 6-25 (193)
361 1e4v_A Adenylate kinase; trans 90.0 0.12 4.2E-06 46.6 2.3 19 62-80 2-20 (214)
362 2onk_A Molybdate/tungstate ABC 90.0 0.13 4.4E-06 48.0 2.4 19 62-80 26-44 (240)
363 2cbz_A Multidrug resistance-as 90.0 0.14 4.8E-06 47.6 2.7 19 62-80 33-51 (237)
364 1b0u_A Histidine permease; ABC 90.0 0.13 4.4E-06 48.6 2.4 19 62-80 34-52 (262)
365 3n70_A Transport activator; si 89.9 0.31 1.1E-05 41.2 4.7 19 62-80 26-44 (145)
366 1gtv_A TMK, thymidylate kinase 89.9 0.097 3.3E-06 46.9 1.4 19 62-80 2-20 (214)
367 1mv5_A LMRA, multidrug resista 89.8 0.15 5.1E-06 47.6 2.7 19 62-80 30-48 (243)
368 2ff7_A Alpha-hemolysin translo 89.8 0.15 5.1E-06 47.7 2.7 19 62-80 37-55 (247)
369 3sr0_A Adenylate kinase; phosp 89.8 0.15 5.1E-06 46.5 2.6 20 61-80 1-20 (206)
370 2p65_A Hypothetical protein PF 89.8 0.15 5E-06 44.0 2.4 19 62-80 45-63 (187)
371 1sgw_A Putative ABC transporte 89.7 0.14 4.9E-06 46.9 2.4 19 62-80 37-55 (214)
372 1lw7_A Transcriptional regulat 89.7 0.15 5E-06 50.4 2.7 21 60-80 170-190 (365)
373 2cjw_A GTP-binding protein GEM 89.7 0.1 3.5E-06 46.2 1.4 25 14-38 4-28 (192)
374 1g6h_A High-affinity branched- 89.7 0.14 4.8E-06 48.2 2.4 19 62-80 35-53 (257)
375 3fvq_A Fe(3+) IONS import ATP- 89.7 0.26 8.9E-06 48.9 4.5 19 62-80 32-50 (359)
376 2v9p_A Replication protein E1; 89.7 0.15 5.2E-06 49.5 2.7 19 62-80 128-146 (305)
377 2plr_A DTMP kinase, probable t 89.7 0.17 5.8E-06 45.0 2.9 20 61-80 5-24 (213)
378 2a9k_A RAS-related protein RAL 89.7 0.19 6.7E-06 43.2 3.2 26 13-38 15-40 (187)
379 3tlx_A Adenylate kinase 2; str 89.7 0.17 6E-06 46.9 3.0 22 59-80 28-49 (243)
380 3gfo_A Cobalt import ATP-bindi 89.6 0.14 4.8E-06 48.8 2.4 19 62-80 36-54 (275)
381 2eyu_A Twitching motility prot 89.6 0.14 4.9E-06 48.3 2.4 19 62-80 27-45 (261)
382 1jjv_A Dephospho-COA kinase; P 89.6 0.17 6E-06 45.1 2.9 20 61-80 3-22 (206)
383 1ji0_A ABC transporter; ATP bi 89.5 0.15 5.2E-06 47.4 2.4 19 62-80 34-52 (240)
384 2olj_A Amino acid ABC transpor 89.5 0.15 5.1E-06 48.3 2.4 19 62-80 52-70 (263)
385 4g1u_C Hemin import ATP-bindin 89.4 0.15 5.1E-06 48.4 2.4 19 62-80 39-57 (266)
386 2pt5_A Shikimate kinase, SK; a 89.4 0.17 5.7E-06 43.5 2.5 19 62-80 2-20 (168)
387 2pze_A Cystic fibrosis transme 89.4 0.17 5.7E-06 46.8 2.7 19 62-80 36-54 (229)
388 1ukz_A Uridylate kinase; trans 89.4 0.22 7.6E-06 44.2 3.4 22 59-80 14-35 (203)
389 1ak2_A Adenylate kinase isoenz 89.4 0.17 5.8E-06 46.4 2.7 22 59-80 15-36 (233)
390 3b85_A Phosphate starvation-in 89.3 0.14 4.6E-06 46.8 2.0 19 62-80 24-42 (208)
391 2ghi_A Transport protein; mult 89.2 0.17 6E-06 47.7 2.7 19 62-80 48-66 (260)
392 1via_A Shikimate kinase; struc 89.2 0.15 5.2E-06 44.3 2.1 19 62-80 6-24 (175)
393 3t5g_A GTP-binding protein RHE 89.1 0.22 7.5E-06 42.9 3.1 24 15-38 5-28 (181)
394 1tev_A UMP-CMP kinase; ploop, 89.1 0.2 6.8E-06 43.8 2.9 20 61-80 4-23 (196)
395 2qi9_C Vitamin B12 import ATP- 89.1 0.16 5.6E-06 47.6 2.4 19 62-80 28-46 (249)
396 2d2e_A SUFC protein; ABC-ATPas 89.1 0.16 5.6E-06 47.5 2.4 19 62-80 31-49 (250)
397 2nzj_A GTP-binding protein REM 89.1 0.22 7.7E-06 42.3 3.1 24 15-38 3-26 (175)
398 3iij_A Coilin-interacting nucl 89.1 0.17 6E-06 44.1 2.4 20 61-80 12-31 (180)
399 1aky_A Adenylate kinase; ATP:A 89.1 0.18 6E-06 45.7 2.5 20 61-80 5-24 (220)
400 1nrj_B SR-beta, signal recogni 89.0 0.39 1.3E-05 42.9 4.8 26 13-38 9-34 (218)
401 2qt1_A Nicotinamide riboside k 89.0 0.21 7.3E-06 44.6 3.0 21 60-80 21-41 (207)
402 2ixe_A Antigen peptide transpo 89.0 0.18 6.3E-06 47.9 2.7 19 62-80 47-65 (271)
403 1vpl_A ABC transporter, ATP-bi 89.0 0.17 5.8E-06 47.7 2.4 19 62-80 43-61 (256)
404 2zu0_C Probable ATP-dependent 88.9 0.17 5.9E-06 47.9 2.4 19 62-80 48-66 (267)
405 1y63_A LMAJ004144AAA protein; 88.9 0.2 6.7E-06 44.2 2.7 20 61-80 11-30 (184)
406 2yc2_C IFT27, small RAB-relate 88.9 0.18 6E-06 44.4 2.4 25 15-39 19-43 (208)
407 3nh6_A ATP-binding cassette SU 88.9 0.17 6E-06 49.0 2.5 19 62-80 82-100 (306)
408 2ihy_A ABC transporter, ATP-bi 88.9 0.19 6.4E-06 48.1 2.7 19 62-80 49-67 (279)
409 3be4_A Adenylate kinase; malar 88.9 0.19 6.4E-06 45.6 2.6 21 60-80 5-25 (217)
410 1g29_1 MALK, maltose transport 88.9 0.38 1.3E-05 47.9 5.0 19 62-80 31-49 (372)
411 1gvn_B Zeta; postsegregational 88.8 0.34 1.2E-05 46.3 4.4 21 60-80 33-53 (287)
412 2kjq_A DNAA-related protein; s 88.8 0.16 5.3E-06 43.7 1.8 19 62-80 38-56 (149)
413 1zd8_A GTP:AMP phosphotransfer 88.8 0.17 5.9E-06 46.1 2.3 20 61-80 8-27 (227)
414 1zcb_A G alpha I/13; GTP-bindi 88.7 0.22 7.4E-06 49.5 3.0 23 58-80 31-53 (362)
415 1ixz_A ATP-dependent metallopr 88.7 0.19 6.3E-06 46.6 2.4 18 63-80 52-69 (254)
416 2xb4_A Adenylate kinase; ATP-b 88.7 0.19 6.6E-06 45.8 2.5 19 62-80 2-20 (223)
417 2nq2_C Hypothetical ABC transp 88.6 0.19 6.4E-06 47.3 2.5 19 62-80 33-51 (253)
418 1oxx_K GLCV, glucose, ABC tran 88.6 0.35 1.2E-05 47.8 4.5 19 62-80 33-51 (353)
419 2wwf_A Thymidilate kinase, put 88.5 0.22 7.5E-06 44.4 2.8 20 61-80 11-30 (212)
420 2v54_A DTMP kinase, thymidylat 88.5 0.21 7.3E-06 44.2 2.7 20 61-80 5-24 (204)
421 2yz2_A Putative ABC transporte 88.5 0.19 6.5E-06 47.5 2.4 19 62-80 35-53 (266)
422 2z0h_A DTMP kinase, thymidylat 88.5 0.2 6.8E-06 44.0 2.4 19 62-80 2-20 (197)
423 2w0m_A SSO2452; RECA, SSPF, un 88.5 0.2 6.8E-06 45.0 2.4 19 62-80 25-43 (235)
424 3aez_A Pantothenate kinase; tr 88.4 0.19 6.6E-06 48.8 2.4 23 58-80 88-110 (312)
425 2bov_A RAla, RAS-related prote 88.3 0.29 9.8E-06 43.0 3.3 25 14-38 12-36 (206)
426 2x8a_A Nuclear valosin-contain 88.2 0.2 7E-06 47.5 2.4 18 63-80 47-64 (274)
427 1c1y_A RAS-related protein RAP 88.2 0.22 7.6E-06 41.9 2.4 22 17-38 4-25 (167)
428 2q3h_A RAS homolog gene family 88.1 0.21 7.1E-06 44.0 2.3 26 13-38 17-42 (201)
429 2pbr_A DTMP kinase, thymidylat 88.1 0.23 7.8E-06 43.4 2.5 19 62-80 2-20 (195)
430 2p5t_B PEZT; postsegregational 88.1 0.27 9.1E-06 45.8 3.2 22 59-80 31-52 (253)
431 2pjz_A Hypothetical protein ST 88.1 0.23 7.8E-06 47.0 2.7 19 62-80 32-50 (263)
432 3bos_A Putative DNA replicatio 88.1 0.22 7.4E-06 44.9 2.4 20 61-80 53-72 (242)
433 1rj9_A FTSY, signal recognitio 88.1 0.21 7.1E-06 48.4 2.4 89 126-225 187-287 (304)
434 3t1o_A Gliding protein MGLA; G 88.0 0.44 1.5E-05 41.3 4.4 26 12-38 10-35 (198)
435 2c95_A Adenylate kinase 1; tra 88.0 0.2 6.9E-06 44.0 2.1 20 61-80 10-29 (196)
436 2yvu_A Probable adenylyl-sulfa 88.0 0.31 1E-05 42.8 3.3 21 60-80 13-33 (186)
437 3llu_A RAS-related GTP-binding 88.0 0.13 4.4E-06 45.5 0.8 29 10-38 14-42 (196)
438 3oes_A GTPase rhebl1; small GT 87.9 0.23 7.8E-06 44.0 2.4 24 15-38 23-46 (201)
439 1mh1_A RAC1; GTP-binding, GTPa 87.9 0.28 9.7E-06 42.1 3.0 23 16-38 5-27 (186)
440 1u8z_A RAS-related protein RAL 87.9 0.29 9.8E-06 41.1 3.0 23 16-38 4-26 (168)
441 2atv_A RERG, RAS-like estrogen 87.9 0.28 9.5E-06 43.1 3.0 24 15-38 27-50 (196)
442 1e6c_A Shikimate kinase; phosp 87.9 0.24 8.1E-06 42.6 2.5 19 62-80 4-22 (173)
443 1kao_A RAP2A; GTP-binding prot 87.8 0.29 1E-05 41.0 3.0 22 17-38 4-25 (167)
444 1zak_A Adenylate kinase; ATP:A 87.8 0.21 7.2E-06 45.3 2.2 20 61-80 6-25 (222)
445 1uf9_A TT1252 protein; P-loop, 87.8 0.26 8.9E-06 43.5 2.7 21 60-80 8-28 (203)
446 4ido_A Atlastin-1; GTPase, GTP 87.6 0.58 2E-05 47.8 5.5 23 58-80 65-87 (457)
447 2bwj_A Adenylate kinase 5; pho 87.5 0.24 8.4E-06 43.5 2.4 20 61-80 13-32 (199)
448 2jeo_A Uridine-cytidine kinase 87.5 0.25 8.4E-06 45.7 2.4 20 61-80 26-45 (245)
449 2ze6_A Isopentenyl transferase 87.4 0.25 8.5E-06 46.2 2.4 19 62-80 3-21 (253)
450 2fh5_B SR-beta, signal recogni 87.3 0.21 7.1E-06 44.6 1.8 25 14-38 5-29 (214)
451 4e22_A Cytidylate kinase; P-lo 87.3 0.27 9.3E-06 45.8 2.7 20 61-80 28-47 (252)
452 1odf_A YGR205W, hypothetical 3 87.3 0.32 1.1E-05 46.7 3.2 22 59-80 30-51 (290)
453 1njg_A DNA polymerase III subu 87.3 0.26 8.8E-06 43.9 2.4 19 62-80 47-65 (250)
454 1qf9_A UMP/CMP kinase, protein 87.3 0.28 9.7E-06 42.7 2.6 20 61-80 7-26 (194)
455 1z47_A CYSA, putative ABC-tran 87.3 0.25 8.5E-06 49.0 2.4 19 62-80 43-61 (355)
456 1nn5_A Similar to deoxythymidy 87.2 0.24 8.1E-06 44.2 2.2 20 61-80 10-29 (215)
457 1iy2_A ATP-dependent metallopr 87.1 0.26 8.9E-06 46.4 2.4 18 63-80 76-93 (278)
458 2vli_A Antibiotic resistance p 87.1 0.21 7.1E-06 43.4 1.7 20 61-80 6-25 (183)
459 2cvh_A DNA repair and recombin 87.1 0.27 9.3E-06 43.9 2.4 19 62-80 22-40 (220)
460 3kta_A Chromosome segregation 87.0 0.25 8.6E-06 43.0 2.1 19 62-80 28-46 (182)
461 3a4m_A L-seryl-tRNA(SEC) kinas 87.0 0.27 9.1E-06 46.1 2.4 20 61-80 5-24 (260)
462 2iyv_A Shikimate kinase, SK; t 87.0 0.28 9.6E-06 42.8 2.4 19 62-80 4-22 (184)
463 1xjc_A MOBB protein homolog; s 87.0 0.28 9.6E-06 43.3 2.4 19 62-80 6-24 (169)
464 2yyz_A Sugar ABC transporter, 87.0 0.26 8.9E-06 48.9 2.4 19 62-80 31-49 (359)
465 2bbs_A Cystic fibrosis transme 86.9 0.26 9E-06 47.3 2.4 19 62-80 66-84 (290)
466 3d31_A Sulfate/molybdate ABC t 86.9 0.25 8.4E-06 48.8 2.2 19 62-80 28-46 (348)
467 2it1_A 362AA long hypothetical 86.9 0.27 9.1E-06 48.9 2.4 19 62-80 31-49 (362)
468 2vp4_A Deoxynucleoside kinase; 86.8 0.26 8.9E-06 45.2 2.2 21 60-80 20-40 (230)
469 3b9q_A Chloroplast SRP recepto 86.8 0.27 9.3E-06 47.5 2.4 20 61-80 101-120 (302)
470 1rz3_A Hypothetical protein rb 86.8 0.32 1.1E-05 43.5 2.8 21 60-80 22-42 (201)
471 3rlf_A Maltose/maltodextrin im 86.7 0.27 9.3E-06 49.2 2.4 19 62-80 31-49 (381)
472 2pez_A Bifunctional 3'-phospho 86.7 0.3 1E-05 42.6 2.4 20 61-80 6-25 (179)
473 1in4_A RUVB, holliday junction 86.7 0.28 9.6E-06 47.7 2.5 19 62-80 53-71 (334)
474 2w58_A DNAI, primosome compone 86.7 0.3 1E-05 43.3 2.4 20 61-80 55-74 (202)
475 1n0w_A DNA repair protein RAD5 86.6 0.29 1E-05 44.4 2.4 19 62-80 26-44 (243)
476 1lv7_A FTSH; alpha/beta domain 86.6 0.29 9.9E-06 45.3 2.4 20 61-80 46-65 (257)
477 1v43_A Sugar-binding transport 86.5 0.28 9.7E-06 48.9 2.4 19 62-80 39-57 (372)
478 1cr0_A DNA primase/helicase; R 86.4 0.27 9.3E-06 46.6 2.2 19 62-80 37-55 (296)
479 2ce2_X GTPase HRAS; signaling 86.3 0.42 1.4E-05 39.8 3.1 22 17-38 4-25 (166)
480 3tui_C Methionine import ATP-b 86.2 0.3 1E-05 48.6 2.4 19 62-80 56-74 (366)
481 3jvv_A Twitching mobility prot 86.2 0.3 1E-05 48.3 2.4 19 62-80 125-143 (356)
482 1vht_A Dephospho-COA kinase; s 86.2 0.39 1.3E-05 43.2 3.0 20 61-80 5-24 (218)
483 3umf_A Adenylate kinase; rossm 86.1 0.32 1.1E-05 44.7 2.4 18 63-80 32-49 (217)
484 3tqc_A Pantothenate kinase; bi 86.0 0.41 1.4E-05 46.7 3.2 23 58-80 90-112 (321)
485 4dsu_A GTPase KRAS, isoform 2B 86.0 0.41 1.4E-05 41.2 3.0 24 15-38 3-26 (189)
486 2j1l_A RHO-related GTP-binding 85.9 0.34 1.2E-05 43.4 2.5 23 16-38 34-56 (214)
487 2gza_A Type IV secretion syste 85.8 0.3 1E-05 48.3 2.2 19 62-80 177-195 (361)
488 2ewv_A Twitching motility prot 85.8 0.33 1.1E-05 48.3 2.5 19 62-80 138-156 (372)
489 3con_A GTPase NRAS; structural 85.8 0.43 1.5E-05 41.4 3.0 23 16-38 21-43 (190)
490 2erx_A GTP-binding protein DI- 85.6 0.43 1.5E-05 40.2 2.8 23 16-38 3-25 (172)
491 1sq5_A Pantothenate kinase; P- 85.6 0.32 1.1E-05 46.9 2.1 21 60-80 80-100 (308)
492 1m7g_A Adenylylsulfate kinase; 85.5 0.36 1.2E-05 43.4 2.4 20 61-80 26-45 (211)
493 2fv8_A H6, RHO-related GTP-bin 85.5 0.41 1.4E-05 42.5 2.7 24 15-38 24-47 (207)
494 2pt7_A CAG-ALFA; ATPase, prote 85.4 0.32 1.1E-05 47.5 2.1 19 62-80 173-191 (330)
495 1hqc_A RUVB; extended AAA-ATPa 85.4 0.48 1.7E-05 45.1 3.4 20 61-80 39-58 (324)
496 3h4m_A Proteasome-activating n 85.4 0.37 1.3E-05 45.2 2.5 20 61-80 52-71 (285)
497 3c5h_A Glucocorticoid receptor 85.3 0.29 9.9E-06 45.6 1.7 27 12-38 15-50 (255)
498 4eaq_A DTMP kinase, thymidylat 85.3 0.37 1.3E-05 44.4 2.4 20 61-80 27-46 (229)
499 1uj2_A Uridine-cytidine kinase 85.3 0.44 1.5E-05 44.2 3.0 22 59-80 21-42 (252)
500 3u61_B DNA polymerase accessor 85.3 0.64 2.2E-05 44.5 4.2 18 63-80 51-68 (324)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.3e-36 Score=280.96 Aligned_cols=166 Identities=29% Similarity=0.544 Sum_probs=141.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+|||++|||||||+++| ..+. +...+.+++| +++..+.+.+++..++++||||+|+++|.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~-~~~~---------f~~~~~~Tig-----~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRF-MYDS---------FDNTYQATIG-----IDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHH-HHSC---------CC---------------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred CcEEEEEECcCCcCHHHHHHHH-HhCC---------CCCCcCCccc-----eEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 4589999999999999999997 3333 4444556666 58888889999999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
.+++.|+++++++|+|||+++++||+++..|+..+.... +++|++|||||+||.++|+++.++++++|++++++|+|||
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S 156 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 156 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence 999999999999999999999999999999999998765 7899999999999998999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhc
Q psy3450 218 PLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~~ 239 (432)
|++|.||+++|+.|++.+....
T Consensus 157 Aktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC----
T ss_pred CCCCcCHHHHHHHHHHHHHhhh
Confidence 9999999999999999886543
No 2
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=238.01 Aligned_cols=174 Identities=25% Similarity=0.289 Sum_probs=141.6
Q ss_pred ccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 51 ~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
...+...+..+||+|+|++|||||||+++| .+..+.. ...++. +.++....+.+++..+++.+||
T Consensus 14 ~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l-~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~l~i~D 78 (195)
T 3cbq_A 14 LYFQGQKDGIFKVMLVGESGVGKSTLAGTF-GGLQGDS---------AHEPEN-----PEDTYERRIMVDKEEVTLVVYD 78 (195)
T ss_dssp --------CEEEEEEECSTTSSHHHHHHHT-CCEECCG---------GGTTTS-----CTTEEEEEEEETTEEEEEEEEC
T ss_pred ccCCCCCCcEEEEEEECCCCCCHHHHHHHH-HhccCCc---------cCCCCc-----ccceEEEEEEECCEEEEEEEEe
Confidence 344455667899999999999999999997 2221110 111121 2366777788999999999999
Q ss_pred CCCCcccch-hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 131 TSGQGRFCT-IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 131 t~G~e~~~~-l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
|+|++.+.. ++..+++++|++|+|||++++++|+.+..|+.++.... .++|++|||||+|+.+++.+..++++.+++
T Consensus 79 t~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~ 158 (195)
T 3cbq_A 79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 158 (195)
T ss_dssp CCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred cCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH
Confidence 999998765 77888999999999999999999999999999998765 479999999999998888899999999999
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.++++|+|+||++|.||+++|++|++.+.++.
T Consensus 159 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 159 TLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp HTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred HhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999986543
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-30 Score=238.95 Aligned_cols=172 Identities=35% Similarity=0.611 Sum_probs=148.7
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
...++..+||+++|++|||||||+++| .++.+ ...+.+++| .++....+.+++..+.+++|||+|
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRF-TQGLF---------PPGQGATIG-----VDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHH-HHSSC---------CTTCCCCCS-----EEEEEEEEEETTEEEEEEEEEECC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHH-HhCCC---------CCCCCCccc-----eeEEEEEEEECCEEEEEEEEECCC
Confidence 445678899999999999999999997 33333 222334443 477778888999999999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+++++..++++.+++..+++
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 164 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY 164 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999998775 57999999999999877888899999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
|+++||++|.||+++|++|++.+.++..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876543
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=238.99 Aligned_cols=173 Identities=36% Similarity=0.607 Sum_probs=144.4
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
.+....+..+||+|+|++|||||||+++| ....+ ...+.+++| .++....+.+++..+.+.||||
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt 85 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRF-KTGAF---------SERQGSTIG-----VDFTMKTLEIQGKRVKLQIWDT 85 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHH-HHSCC------------------------CEEEEEEEETTEEEEEEEECC
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHH-hhCCC---------CCCCCCCcc-----eEEEEEEEEECCEEEEEEEEEC
Confidence 44556678899999999999999999998 33333 222333433 4677788888998899999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.... +++|++||+||+|+.+++.+..++++++++..+
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 165 (201)
T 2hup_A 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD 165 (201)
T ss_dssp TTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998876 679999999999998778889999999999999
Q ss_pred C-cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 211 M-AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 211 ~-~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+ +++++||++|.||+++|++|++.+.++.
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999997654
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.6e-30 Score=234.43 Aligned_cols=169 Identities=45% Similarity=0.752 Sum_probs=122.5
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..++.+||+++|++|||||||+++| .+.. +...+.++++ .++....+.+++..+.+.+|||+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l-~~~~---------~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRF-SEDA---------FNSTFISTIG-----IDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp CCSEEEEEEEECCCCC--------------------------CHHHHHC-----EEEEEEEEEETTEEEEEEEEEC----
T ss_pred ccCCceEEEEECCCCCCHHHHHHHH-HhCC---------CCCCCCCccc-----ceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 3467899999999999999999997 2322 2222333333 46777788889999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|++||+||+|+.+++.+..++++++++.++++++
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM 148 (183)
T ss_dssp -----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEE
T ss_pred hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999999999998764 5799999999999988788899999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.||+++|++|.+.+.++.
T Consensus 149 ~~Sa~~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 149 ETSAKANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp ECCC---CCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=229.19 Aligned_cols=170 Identities=35% Similarity=0.664 Sum_probs=147.4
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
...+..+||+++|++|||||||+++| .+..+ ...+.++.+ .++....+.+++..+.+.+|||+|+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRF-ADNTF---------SGSYITTIG-----VDFKIRTVEINGEKVKLQIWDTAGQ 68 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHH-CSCC------------CCTTTBS-----EEEEEEEEEETTEEEEEEEEEETTG
T ss_pred cccCcceEEEEECCCCCCHHHHHHHH-hcCCC---------CCccCCCce-----eEEEEEEEEECCEEEEEEEEcCCCc
Confidence 34567899999999999999999998 33332 222233332 4677788888999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+.+..++..+++++|++|+|||++++.+|+.+..|+..+....+++|++||+||+|+.+.+.+..+++..++...+++++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999998888899999999999988888888999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.|++++|++|.+.+.+..
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 149 ETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=5.7e-30 Score=233.45 Aligned_cols=173 Identities=34% Similarity=0.632 Sum_probs=147.9
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
......++.+||+|+|++|||||||+++| .+..+. ....+++| .++....+.+++..+.+.+|||
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt 77 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQF-TDKRFQ---------PVHDLTIG-----VEFGARMVNIDGKQIKLQIWDT 77 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHH-HHSCCC---------C-----CC-----SSEEEEEEEETTEEEEEEEECC
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----ceeEEEEEEECCEEEEEEEEEC
Confidence 44556678899999999999999999998 333322 22223333 4677778888999999999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+|++++..++..+++++|++|+|||++++++|+.+..|+..+.... +++|++||+||+|+.+++++..++++.+++.++
T Consensus 78 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 157 (191)
T 2a5j_A 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG 157 (191)
T ss_dssp TTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998764 679999999999998778888999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++++++||++|.||+++|++|++.+.++.
T Consensus 158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 158 LIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=230.65 Aligned_cols=172 Identities=41% Similarity=0.703 Sum_probs=149.0
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
...+..+||+|+|++|||||||+++| .+..+ ...+.++.+ .++....+.+++..+.+.||||+|+
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRF-ADDTY---------TESYISTIG-----VDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHH-HHSCC---------CSCCCCCSS-----EEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHH-HcCCC---------CCCCCCccc-----ceEEEEEEEECCEEEEEEEEECCCc
Confidence 34567899999999999999999998 33332 222233333 4677788888999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+...+.+..+++..+++.+++++
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPF 155 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCE
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcE
Confidence 9999999999999999999999999999999999999998775 579999999999998888899999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~~~ 241 (432)
+++||++|.||+++|++|++.+.++...
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876543
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=3.7e-30 Score=240.14 Aligned_cols=170 Identities=22% Similarity=0.348 Sum_probs=140.9
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+|+|++|||||||+++| .++.+ ...+.++++ +.....+.+++..+.+.||||+|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVL-AKDCY---------PETYVPTVF------ENYTACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHH-HHSCC---------CSSCCCCSE------EEEEEEEEC--CEEEEEEEEECCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHH-hcCCC---------CCCcCCeee------eeEEEEEEECCEEEEEEEEECCCC
Confidence 34456799999999999999999998 33333 333344554 334566778888999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhh-HHHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHH
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDG-IDRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTRE 201 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~-l~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee 201 (432)
++|..++..+++++|++|+|||++++++|++ +..|+..+....+++|++|||||+|+.++ +.+..++
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ 165 (214)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHH
Confidence 9999999999999999999999999999999 69999999998888999999999999653 7799999
Q ss_pred HHHHHHhcCC-cEEEEcCCCCCC-HHHHHHHHHHHHhhhcC
Q psy3450 202 AEMYAIKNQM-AFFEVSPLCDFN-IRESFTELSRRALQRNG 240 (432)
Q Consensus 202 ~~~~a~~~~~-~~~evSAktg~n-I~elf~~L~~~i~~~~~ 240 (432)
+..+++.+++ +|+||||++|.| |+++|++|++.+.++..
T Consensus 166 ~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 166 GCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999999999 999999999998 99999999999876543
No 10
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=9.1e-30 Score=229.06 Aligned_cols=166 Identities=26% Similarity=0.364 Sum_probs=142.6
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .++.+ ...+.++.+ +.....+.+++..+.+++|||+|++++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQF-VEGQF---------VDSYDPTIE------NTFTKLITVNGQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHH-HHSSC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCCCCTTC
T ss_pred ceEEEEEECcCCCCHHHHHHHH-HcCCC---------CCCCCCCcc------ccEEEEEEECCEEEEEEEEeCCCchhhh
Confidence 5689999999999999999998 22222 233334444 3336777889999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
.++..+++++|++|+|||++++++|+.+..|+.++.... +++|++||+||+|+.+++.+..++++++++.++++|+++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 999999999999999999999999999999999987664 479999999999998889999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~ 240 (432)
||++|.|++++|++|++.+.+.+.
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC--
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999977654
No 11
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.3e-29 Score=231.36 Aligned_cols=169 Identities=22% Similarity=0.364 Sum_probs=144.3
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+++|++|||||||+++| .++.+ ...+.++++ +.....+.+++..+.+.+|||+|+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAF-SKGEI---------PTAYVPTVF------ENFSHVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHH-HHSCC---------CSSCCCCSE------EEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHH-hcCCC---------CCccCCeee------eeeEEEEEECCEEEEEEEEECCCc
Confidence 34456799999999999999999998 33322 223334444 444556778999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC--CcccCHHHHHHHHHhcCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF--NRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~--~r~v~~ee~~~~a~~~~~ 211 (432)
+++..++..+++++|++|+|||++++++|+++ ..|+..+....+++|++||+||+|+.+ .+.+..+++.++++.+++
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 99999999999999999999999999999997 889999998888899999999999975 377889999999999999
Q ss_pred c-EEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 212 A-FFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 212 ~-~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
. |+++||++|.||+++|++|++.+.++.
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 7 999999999999999999999997654
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=8.5e-30 Score=226.04 Aligned_cols=166 Identities=33% Similarity=0.565 Sum_probs=136.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.+..+||+++|++|||||||+++| .++.+. ..+.++++ .++....+.+++..+.+.+|||+|+++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRY-CENKFN---------DKHITTLG-----ASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHH-HHCCCC---------SSCCCCCS-----CEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CCcceEEEEECcCCCCHHHHHHHH-HcCCCC---------cCCCCccc-----eEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 356799999999999999999998 333332 22233443 356667788888899999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+++++..++++++++..++++++
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYH 147 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999987654 57899999999999877888899999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~ 237 (432)
+||++|.|++++|++|++.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 148 TSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=2.4e-29 Score=228.65 Aligned_cols=170 Identities=35% Similarity=0.625 Sum_probs=146.9
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
....++.+||+|+|++|||||||+++| .+..+. ..+.+++| .++....+..++..+.+.+|||+|
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRY-ADDSFT---------PAFVSTVG-----IDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHH-HHSCCC---------CSCCCCCC-----CEEEEEEEEETTEEEEEEEEECCS
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHH-HcCCCC---------CCcCCcee-----EEEEEEEEEECCeEEEEEEEeCCC
Confidence 344577899999999999999999998 333332 22233333 366667778888899999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
++++..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|++||+||+|+.+++.+..++++++++.++++
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE 160 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999998875 57999999999999877888889999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++||++|.|++++|++|++.+.++
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988664
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.8e-29 Score=225.51 Aligned_cols=167 Identities=35% Similarity=0.681 Sum_probs=144.6
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+++| .+..+. ..+.++.+ .++....+.+++..+.+.+|||+|++
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQF-TEKKFM---------ADCPHTIG-----VEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHH-HHSCCC---------SSCTTSCC-----CCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred ccccceEEEEECCCCCCHHHHHHHH-HcCCCC---------CCCCCccc-----eEEEEEEEEECCeEEEEEEEECCCCh
Confidence 4567899999999999999999998 333322 22223333 36667778889989999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++++|++|+|||++++.+++.+..|+..+.... +++|+++|+||+|+.+++++..++++++++.++++++
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999998766 6899999999999987788889999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~ 237 (432)
++||++|.||+++|++|++.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 156 EASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999998854
No 15
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=2.3e-29 Score=231.82 Aligned_cols=173 Identities=42% Similarity=0.719 Sum_probs=150.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.+..+||+|+|++|||||||+++| .+..+ ...+.++++ .++....+.+++..+.+.+|||+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRF-SDDTY---------TNDYISTIG-----VDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHH-HHCCC---------CTTCCCSSC-----CCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCccc-----ceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 467899999999999999999998 33333 222334443 467777888899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|++||+||+|+.+++.+..+++..+++..++++++
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 149 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999998765 67999999999999888888999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhcCCccc
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRNGMERL 244 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~~~~~~ 244 (432)
+||++|.||+++|++|.+.+.+......+
T Consensus 150 ~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~ 178 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTMARQIKESMSQQNL 178 (206)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHCCHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999876554443
No 16
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.1e-29 Score=224.67 Aligned_cols=165 Identities=30% Similarity=0.553 Sum_probs=143.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| .+..+ ...+.+++| .++....+.+++..+.+.+|||+|++++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRY-CKGIF---------TKDYKKTIG-----VDFLERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHH-HHCCC---------CCCSSCCCS-----SSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred ceeEEEEEECcCCCCHHHHHHHH-HcCCC---------CCCCCCceE-----EEEEEEEEEECCEEEEEEEEcCCCcHhH
Confidence 45799999999999999999998 33332 222333433 4777788888998999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
..++..+++++|++|+|||++++.+++.+..|+..+....++.|+++|+||+|+.+++++..++++++++.++++++++|
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999987667899999999999987778888999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++|.|++++|++|.+.+.+
T Consensus 148 a~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTTBSSHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998854
No 17
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=7.6e-30 Score=232.52 Aligned_cols=164 Identities=27% Similarity=0.361 Sum_probs=136.8
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++| .++.+ ...+.++++ +.....+.+++..+.++||||+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKF-LTKRF---------ISEYDPNLE------DTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHH-HHSSC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCC---
T ss_pred CCceEEEEEECCCCCcHHHHHHHH-HhCCC---------CcccCCCcc------ceeeEEEEECCEEEEEEEEECCCCCc
Confidence 456799999999999999999998 33333 223344554 33355677899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
+..+ ..+++.+|++|+|||++++++|+++..|+.++.... +++|++||+||+|+.+++++..+++.++++.++++
T Consensus 82 ~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 160 (187)
T 3c5c_A 82 PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL 160 (187)
T ss_dssp CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE
T ss_pred chhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc
Confidence 8875 679999999999999999999999999999988763 57999999999999877889999999999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhh
Q psy3450 213 FFEVSP-LCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 213 ~~evSA-ktg~nI~elf~~L~~~i~~ 237 (432)
|+++|| ++|.||+++|+.|++.+.+
T Consensus 161 ~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 161 FFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEeecCccccHHHHHHHHHHHHhh
Confidence 999999 8999999999999998754
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.8e-29 Score=227.51 Aligned_cols=166 Identities=27% Similarity=0.422 Sum_probs=143.8
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.....+||+++|++|||||||+++|. +..+ ...+.++.+ +.....+.+++..+.+.+|||+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~-~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFF-QKIF---------VDDYDPTIE------DSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHH-HSCC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCSCG
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHH-hCCC---------CCCCCCCcc------ceeEEEEEeCCcEEEEEEEECCCch
Confidence 44568999999999999999999983 2222 222334443 3346777889999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
++..++..+++++|++|+|||++++++|+.+..|+..+... ..++|+++|+||+|+.+++.+..++++++++.++++|
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPY 157 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCE
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999998663 2679999999999998888999999999999999999
Q ss_pred EEEcCC-CCCCHHHHHHHHHHHHhh
Q psy3450 214 FEVSPL-CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 214 ~evSAk-tg~nI~elf~~L~~~i~~ 237 (432)
+++||+ +|.||+++|++|.+.+.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHHhh
Confidence 999999 999999999999998864
No 19
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.6e-29 Score=228.23 Aligned_cols=169 Identities=38% Similarity=0.684 Sum_probs=146.4
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+++| .+..+. ..+.++++ .++....+.+++..+.+.+|||+|++
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQF-IEKKFK---------DDSNHTIG-----VEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHH-HHSSCC---------TTCCCCSE-----EEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccccceEEEEECCCCCCHHHHHHHH-HcCCCC---------CCCCCccc-----eEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4567899999999999999999997 333332 22223332 36667778889988999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++++|++|+|||++++++|+.+..|+..+.... +++|++||+||+|+..++.+..+++..+++..+++++
T Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 150 (186)
T ss_dssp GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999988765 6799999999999987788888999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.||+++|+++++.+.++.
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 151 ETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 20
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=231.07 Aligned_cols=171 Identities=35% Similarity=0.649 Sum_probs=142.9
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
..+...+..+||+|+|++|||||||+++| .++.+ ...+.+++| .++....+.+++..+.+.+|||
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~l~Dt 82 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERF-TDDTF---------CEACKSTVG-----VDFKIKTVELRGKKIRLQIWDT 82 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHH-CC-----------------CCTT-----EEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHH-hcCCC---------CcCCCCccc-----eeEEEEEEEECCeEEEEEEEeC
Confidence 34455678899999999999999999998 33322 222334443 4677778888998999999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhc-
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN- 209 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~- 209 (432)
+|++++..++..+++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+.+++++..++++++++..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 162 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT 162 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999988776 47999999999999877888889999999885
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++++||++|.||+++|++|.+.+.+
T Consensus 163 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 163 GMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999998865
No 21
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.6e-29 Score=224.30 Aligned_cols=164 Identities=25% Similarity=0.322 Sum_probs=133.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .+..+. ....++ .+.++....+.+++..+.+.+|||+|++++..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l-~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTF-GGLQGD---------HAHEME-----NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HCC--------------------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred cEEEEEECCCCCCHHHHHHHH-HhccCc---------ccccCC-----CcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence 589999999999999999997 322221 111111 12367778888999999999999999998876
Q ss_pred -hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC--CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 140 -IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 140 -l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~--~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
++..+++++|++++|||++++++|+.+..|+.++....+ ++|+++|+||+|+.+++++..+++..+++.++++|+++
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T 3q85_A 67 WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIET 146 (169)
T ss_dssp ---CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEe
Confidence 677788999999999999999999999999999988764 79999999999998888899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhh
Q psy3450 217 SPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~ 238 (432)
||++|.|++++|+++++.+..+
T Consensus 147 Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCccCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988653
No 22
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.4e-29 Score=226.68 Aligned_cols=166 Identities=30% Similarity=0.462 Sum_probs=142.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECC-eEEEEEEEeCCCCcc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG-KRVKLQLWDTSGQGR 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~-~~v~l~i~Dt~G~e~ 136 (432)
...+||+++|++|||||||+++| .++.+ ...+.+++| .++....+.+++ ..+.+++|||+|+++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCF-AQETF---------GKQYKQTIG-----LDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHH-HGGGT---------THHHHHTTT-----SSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHH-HhCcC---------CCCCCCcee-----EEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 45699999999999999999998 33332 222334444 477778888876 678999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCc-EEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVP-KVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iP-iILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
+..++..+++++|++|+|||++++++|+++..|+..+.... .+.| ++||+||+|+.+++.+..+++..+++.++++
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2hxs_A 69 GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS 148 (178)
T ss_dssp TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE
T ss_pred ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999987743 2455 8999999999877888899999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++||++|.||+++|++|++.+.+.
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998654
No 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-30 Score=235.92 Aligned_cols=173 Identities=35% Similarity=0.636 Sum_probs=149.9
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
..+...++.+||+|+|++|||||||+++| .+..+ ...+.++.| .++....+.+++..+.+.||||
T Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt 79 (191)
T 3dz8_A 15 YFQGNFDYMFKLLIIGNSSVGKTSFLFRY-ADDTF---------TPAFVSTVG-----IDFKVKTVYRHEKRVKLQIWDT 79 (191)
T ss_dssp EETTEEEECEEEEEEESTTSSHHHHHHHH-HHHTT---------CCCEEEEET-----TTEEEEEEEETTTTEEEEEECH
T ss_pred ccccccCeeeEEEEECCCCcCHHHHHHHH-hcCCC---------CcccCCCee-----eEEEEEEEEECCEEEEEEEEeC
Confidence 44556778899999999999999999998 32222 222223333 4677778888888899999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+|++.+..++..+++++|++|+|||++++++|+.+..|+..+.... +++|++||+||+|+.+++.+..++++.+++.++
T Consensus 80 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 159 (191)
T 3dz8_A 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG 159 (191)
T ss_dssp HHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998876 679999999999998888899999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++++++||++|.||+++|++|++.+.++.
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987654
No 24
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=228.67 Aligned_cols=172 Identities=35% Similarity=0.637 Sum_probs=146.5
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
......+..+||+|+|++|||||||+++| .+..+. ..+.+++| .++....+.+++..+.+.||||
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt 81 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRF-TRNEFS---------HDSRTTIG-----VEFSTRTVMLGTAAVKAQIWDT 81 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHH-HHSCCC---------SSCCCCSS-----EEEEEEEEEETTEEEEEEEEEE
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----eeEEEEEEEECCEEEEEEEEeC
Confidence 33455677899999999999999999998 333332 22233333 4666777888888999999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+...+.+..+++..+++..+
T Consensus 82 ~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 161 (193)
T 2oil_A 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG 161 (193)
T ss_dssp SCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998765 579999999999998777888899999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.||+++|++|++.+.++
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=2.7e-29 Score=222.20 Aligned_cols=162 Identities=24% Similarity=0.319 Sum_probs=122.9
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .+..+. ...++.| ......+.+++..+.+.+|||+|++++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l-~~~~~~----------~~~~~~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 64 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIF-GGVEDG----------PEAEAAG------HTYDRSIVVDGEEASLMVYDIWEQDGGRW 64 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHH-CCC--------------------------CEEEEEEEETTEEEEEEEEECC-------
T ss_pred eEEEEEECCCCCCHHHHHHHH-cCcccc----------CCCCccc------cceEEEEEECCEEEEEEEEECCCCccchh
Confidence 579999999999999999997 222211 1222333 33346677899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++.+|++++|||++++++|+.+..|+..+.... +++|+++|+||+|+.+++.+..++++.++..++++++++|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 99999999999999999999999999999999988764 6799999999999988889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh
Q psy3450 218 PLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~ 238 (432)
|++|.|++++|++|.+.+.++
T Consensus 145 a~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GGGTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=2.3e-29 Score=222.65 Aligned_cols=163 Identities=36% Similarity=0.611 Sum_probs=141.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| ..+.+ ...+.+++| .++....+.+++..+.+.+|||+|++++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRF-VKGQF---------HEFQESTIG-----AAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHH-HHSCC---------CTTCCCCSS-----EEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCccc-----eEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 35689999999999999999998 33322 222233333 3566677788888999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+++.+..+++..+++..+++++++
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999999999988764 689999999999998777888899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy3450 217 SPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i 235 (432)
||++|.|++++|++|.+.+
T Consensus 149 Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998866
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=222.20 Aligned_cols=166 Identities=25% Similarity=0.328 Sum_probs=134.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc--
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR-- 136 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~-- 136 (432)
..+||+++|++|||||||+++| .+..+... .++.| .++....+.+++..+.+.+|||+|++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l-~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLF-AGKQERDL----------HEQLG-----EDVYERTLTVDGEDTTLVVVDTWEAEKLD 66 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHH-HCC---------------CCCSS-----SSEEEEEEEETTEEEEEEEECCC------
T ss_pred eEEEEEEECCCCccHHHHHHHH-hcCCCccc----------cCccc-----cceeEEEEEECCEEEEEEEEecCCCCccc
Confidence 5689999999999999999997 33333211 11222 256667788899999999999999987
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+..+...+++.+|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+.+++..++++.++..++++++
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEE
T ss_pred hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEE
Confidence 67777889999999999999999999999999999888753 5799999999999988888999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++||++|.||+++|++|++.+.++..
T Consensus 147 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 147 ETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999866543
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5e-29 Score=223.40 Aligned_cols=169 Identities=38% Similarity=0.657 Sum_probs=137.4
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+++|++|||||||+++| .+..+.. ..+.++.+ .++....+.+++..+.+.+|||+|++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l-~~~~~~~--------~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRF-KDGAFLA--------GTFISTVG-----IDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHH-HHSCCCC--------CCCCCCCS-----CEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cCCcceEEEEECcCCCCHHHHHHHH-HhCCCCC--------CCcCCcee-----eEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3467899999999999999999998 3333311 11223333 46666777889999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++++|++|+|||++++.+++++..|+..+.... .++|++||+||+|+..++++..++++.+++.++++++
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp -------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999999999998866 5799999999999988888889999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++||++|.|++++|++|.+.+.++
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 152 ETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=3.8e-29 Score=224.39 Aligned_cols=166 Identities=31% Similarity=0.562 Sum_probs=143.3
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++| ....+ .....+++| .++....+.+++..+.+.+|||+|+++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRF-VKDQF---------VEFQESTIG-----AAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHH-HHCCC---------TTTSCCCSC-----CSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred CccceEEEEECcCCCCHHHHHHHH-HcCCC---------CCcCCCCce-----eEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 456799999999999999999998 33332 222233333 366777788899899999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
+..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+.+++..+++..+++..++++++
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999998775 57999999999999887888899999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~ 237 (432)
+||++|.|++++|++|++.+.+
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 154 TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CCSSSCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987744
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=5.4e-29 Score=228.62 Aligned_cols=168 Identities=34% Similarity=0.639 Sum_probs=146.6
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..++.+||+|+|++|||||||+++| .+..+ ...+.+++| .++....+.+++..+.+.+|||+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRY-ADDSF---------TPAFVSTVG-----IDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHH-HTCCC---------CSCCCCCCS-----EEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceeeEEEEECCCCCCHHHHHHHH-hcCCC---------CCCcCCccc-----eeEEEEEEEECCeEEEEEEEECCCch
Confidence 3467899999999999999999998 33333 222334443 46667778889989999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+.+.+..+++..+++.++++++
T Consensus 69 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEE
T ss_pred hhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999999999999999999998766 5799999999999988888889999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++||++|.||+++|++|.+.+.++
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 149 EASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp ECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 31
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=228.85 Aligned_cols=169 Identities=25% Similarity=0.419 Sum_probs=140.0
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.....+||+++|++|||||||+++| .+..+ ...+.++++ +.....+.+++..+.+.+|||+|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSY-TTNGY---------PTEYIPTAF------DNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHH-HC-----------------CCSS------EEEEEEEEETTEEEEEEEEECCCST
T ss_pred CCCcceEEEEECCCCCCHHHHHHHH-HhCCC---------CCCCCCccc------ceeEEEEEECCEEEEEEEEECCCCH
Confidence 3456799999999999999999998 33223 223334443 4455677889989999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHH
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREA 202 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~ 202 (432)
+|..++..+++++|++|+|||++++++|+++. .|+..+....+++|++||+||+|+.. .+.+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 99999999999999999999999999999996 79999998878899999999999965 367888899
Q ss_pred HHHHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 203 EMYAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 203 ~~~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
..+++.+++ +|+++||++|.||+++|++|++.+.+...
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999887 99999999999999999999999876543
No 32
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.9e-29 Score=234.09 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=139.7
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
...+..+||+|+|++|||||||+++| .+... .+...+ +++| .++..+.+.+++..+++.+|||+|+
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~-~~~~~-------~~~~~~-~~~g-----~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIF-AGVHD-------SMDSDC-EVLG-----EDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHH-HCCCC-------TTCCC----CC-----TTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHH-HhCCC-------CCCCcC-Cccc-----eeeEEEEEEECCeeeEEEEeecCCC
Confidence 34566799999999999999999997 32111 011111 1122 3677788889999999999999999
Q ss_pred cc-cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 135 GR-FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 135 e~-~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
+. +..+...|++.+|++|+|||++++++|+.+..|+..+.... +++|+||||||+||.+.+++..++++.++..+++
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~ 177 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC 177 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC
Confidence 87 56677788999999999999999999999999998887642 5799999999999987788888999999999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+|+||||++|.||+++|++|++.+..+.
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999886543
No 33
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=3.8e-29 Score=227.71 Aligned_cols=163 Identities=17% Similarity=0.311 Sum_probs=138.0
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+++|++|||||||+++| .++.|. ..+.++. +.+.+.+.+++..+.++||||+|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~-~~~~~~---------~~~~~t~-------~~~~~~~~~~~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRY-LTGTYV---------QEESPEG-------GRFKKEIVVDGQSYLLLIRDEGGP 77 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHH-HHSSCC---------CCCCTTC-------EEEEEEEEETTEEEEEEEEECSSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHH-hcCCCC---------CCcCCCc-------ceEEEEEEECCEEEEEEEEECCCC
Confidence 34456799999999999999999997 333332 2222332 334578889999999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCC--CCcccCHHHHHHHHHhcC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLA--FNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~--~~r~v~~ee~~~~a~~~~ 210 (432)
+++. +++++|++|+|||++++.+|+++..|+.++.... +++|++|||||+|+. .++.+..+++.++++.++
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK 152 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC
Confidence 8876 7889999999999999999999999999998764 579999999999994 467889999999999997
Q ss_pred -CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 211 -MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 211 -~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++|+++||++|.||+++|++|++.+.+++
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999987654
No 34
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=3.4e-29 Score=221.87 Aligned_cols=164 Identities=41% Similarity=0.698 Sum_probs=139.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .+..+. ..+.++++ .++....+.+++..+.+.+|||+|++++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRF-VEDKFN---------PSFITTIG-----IDFKIKTVDINGKKVKLQIWDTAGQERFR 66 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHH-HHCCCC---------C------------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred CceEEEEECcCCCCHHHHHHHH-HhCCCC---------CCCCCccc-----eeEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 5689999999999999999998 333332 22233333 36667778888888999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
.++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+ .++.+..+++.++++.++++++++|
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999999999999999999998776 57999999999999 4567888899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh
Q psy3450 218 PLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~~ 238 (432)
|++|.|++++|++|.+.+.++
T Consensus 146 a~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998654
No 35
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5e-29 Score=227.21 Aligned_cols=165 Identities=24% Similarity=0.409 Sum_probs=141.4
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++| .++.+. ..+.++.+ +.....+.+++..+.+.+|||+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSY-ANDAFP---------EEYVPTVF------DHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHH-HHSSCC---------CSCCCSSC------CCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred CCceEEEEEECCCCCCHHHHHHHH-hcCCCC---------CCCCCccc------ceeEEEEEECCEEEEEEEEECCCCcc
Confidence 346799999999999999999998 333332 22334443 34456677888889999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHH
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAE 203 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~ 203 (432)
+..++..+++++|++|+|||++++++|+.+. .|+..+....+++|++||+||+|+.+. +.+..+++.
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 9999999999999999999999999999996 899999988778999999999999753 578889999
Q ss_pred HHHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 204 MYAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 204 ~~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++.+++ +|+++||++|.||+++|++|++.++.
T Consensus 159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999998 99999999999999999999998753
No 36
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-29 Score=229.69 Aligned_cols=169 Identities=31% Similarity=0.499 Sum_probs=143.0
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
...++..+||+|+|++|||||||+++| .+..+ ...+.+++| .++....+.+++..+.+.+|||+|
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRF-VQDHF---------DHNISPTIG-----ASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHH-HHCCC---------CTTCCCCSS-----EEEEEEEEECSSSEEEEEEEEECC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHH-hcCCC---------CCCcCCCcc-----eeEEEEEEEeCCEEEEEEEEcCCC
Confidence 445577899999999999999999998 33222 222334444 355666777788889999999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMA 212 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~ 212 (432)
++++..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+++.+..++++++++.++++
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 161 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI 161 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999998876 57999999999999877788899999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++||++|.||+++|++|.+.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 162 VVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987743
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=231.48 Aligned_cols=170 Identities=37% Similarity=0.658 Sum_probs=142.7
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
...+..+||+|+|++|||||||+++| .++.+ ...+.++++ .++....+.+++..+.+.||||+|+
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQF-IENKF---------KQDSNHTIG-----VEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHH-HC--------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred cccCcceEEEEECcCCCCHHHHHHHH-HhCCC---------CccCCCccc-----ceeEEEEEEECCeeeEEEEEcCCCc
Confidence 34567899999999999999999998 33333 222333333 4677778888998999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
+++..++..+++.+|++|+|||++++.+|+.+..|+..+.... +++|++||+||+|+..++.+..+++..+++..++++
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 164 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEE
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999999999988765 679999999999998778888899999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+++||++|.||+++|++|++.+.++.
T Consensus 165 ~~~SA~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 165 LETSALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=3.9e-29 Score=220.35 Aligned_cols=162 Identities=27% Similarity=0.418 Sum_probs=137.0
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++|. +..+ ...+.++.+ +.....+.+++..+.+.+|||+|++++..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~-~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM-YDEF---------VEDYEPTKA------DSYRKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-HSCC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCC---CHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH-hCcc---------CCCCCCCcc------eEEEEEEEECCEEEEEEEEECCCcchhHH
Confidence 5899999999999999999983 2222 222233333 34455677889899999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++.+|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+.+.+++..+++..+++.++++++++|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETS 147 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 99999999999999999999999999999999988765 3799999999999987778889999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++|.|++++|++|.+.+.+
T Consensus 148 a~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 148 AKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998854
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=5.1e-29 Score=220.71 Aligned_cols=164 Identities=33% Similarity=0.552 Sum_probs=142.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| .+..+ ...+.++.| .++....+.+++..+.+.+|||+|++++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRF-VEDSF---------DPNINPTIG-----ASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHH-HHSCC---------CTTCCCCCS-----EEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHH-HcCCC---------CCCCCCcee-----EEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 45799999999999999999998 33332 222334444 3566677788888999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
..++..+++++|++|+|||++++.+++.+..|+..+.... +++|+++|+||+|+.+.+++..+++..+++..+++++++
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999999999999999999999998874 789999999999998778888999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q psy3450 217 SPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~ 236 (432)
||++|.|++++|++|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998763
No 40
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=2.3e-29 Score=232.90 Aligned_cols=167 Identities=28% Similarity=0.465 Sum_probs=139.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| ..+.+ ...+.++++ +.....+.+++..+.+.+|||+|+++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICY-TSNKF---------PTDYIPTVF------DNFSANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHH-HHSCC---------CSSCCCSSC------CCEEEEEECSSCEEEEEEECCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHH-hcCCC---------CccCCCccc------eeEEEEEEECCEEEEEEEEECCCcHHH
Confidence 35699999999999999999998 33333 223334444 444566778888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCcc--------cCHHHHHHHHHh
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNRT--------VTTREAEMYAIK 208 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r~--------v~~ee~~~~a~~ 208 (432)
..++..+++++|++|+|||++++++|+++. .|+..+....+++|++||+||+|+.+++. +..+++.++++.
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999996 89999998877899999999999976554 478889999999
Q ss_pred cCC-cEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 209 NQM-AFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 209 ~~~-~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+++ +|+++||++|.||+++|++|++.+.+...
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 151 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred cCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 996 99999999999999999999999976543
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=5.3e-29 Score=222.85 Aligned_cols=168 Identities=28% Similarity=0.452 Sum_probs=142.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++|. +..+ ...+.++.+ +.....+.+++..+.+.+|||+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~-~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFI-QSYF---------VSDYDPTIE------DSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHH-HSSC---------CSSCCTTCC------EEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH-hCcC---------ccccCCCcC------ceEEEEEEECCEEEEEEEEECCCchh
Confidence 3457899999999999999999983 3222 222334443 33346677889889999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh-C-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH-A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~-~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+..++..+++++|++|+|||++++++|+.+..|+.++... . .++|+++|+||+|+.+.+++..+++..++...+++++
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999999999988443 2 5799999999999987788889999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++||++|.|++++|++|.+.+.+..+
T Consensus 150 ~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 150 EASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999876543
No 42
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-29 Score=233.84 Aligned_cols=171 Identities=40% Similarity=0.662 Sum_probs=141.7
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+++| .+..+. ..+.+++| .++....+.+++..+.+.||||+|++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRF-TKNEFN---------MDSKSTIG-----VEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHH-HHCCCC---------C------C-----CSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----ceeEEEEEEECCEEEEEEEEECCCcc
Confidence 3467899999999999999999998 333332 22233443 46777788889988999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+|..++..+++.+|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+...+++..+++..+++..+++|+
T Consensus 74 ~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp TTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred chhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999998765 5799999999999987788888999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcCC
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNGM 241 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~~ 241 (432)
++||++|.||+++|++|++.+.++...
T Consensus 154 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 154 ETSALNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp ECCCC-CCCHHHHHHHHHHHHTTCC--
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999775543
No 43
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=2.1e-29 Score=228.32 Aligned_cols=164 Identities=23% Similarity=0.413 Sum_probs=139.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| .++.+ ...+.++++ ......+.+++..+.+.+|||+|+++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVF-AKDCF---------PENYVPTVF------ENYTASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHH-HHSCC---------CSSCCCCSE------EEEEEEEECSSCEEEEEEEEECCSGGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCccc------eeEEEEEEECCEEEEEEEEECCCChhh
Confidence 45799999999999999999998 33333 222334443 333456677888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++++|+++ ..|+..+....+++|++||+||+|+.+ .+.+..+++.+
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 99999999999999999999999999999 789999988878899999999999964 26688899999
Q ss_pred HHHhcC-CcEEEEcCC-CCCCHHHHHHHHHHHHhh
Q psy3450 205 YAIKNQ-MAFFEVSPL-CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 205 ~a~~~~-~~~~evSAk-tg~nI~elf~~L~~~i~~ 237 (432)
+++.++ ++|+++||+ +|.||+++|+.+++.+++
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999987 699999999 689999999999998864
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.2e-29 Score=220.89 Aligned_cols=161 Identities=32% Similarity=0.553 Sum_probs=139.3
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .++.+. ..+.++.| .++....+.+++..+.+.+|||+|++++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRF-VSNDFA---------ENKEPTIG-----AAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HHSCCC---------TTCCCCSS-----EEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----eeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 589999999999999999998 333322 22333443 356667778899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCC---cccCHHHHHHHHHhcCCcEEE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFN---RTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~---r~v~~ee~~~~a~~~~~~~~e 215 (432)
++..+++++|++|+|||++++.+++++..|+..+.... +++|+++|+||+|+..+ +++..++++.+++..++++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999988765 67999999999999655 678888999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q psy3450 216 VSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i 235 (432)
+||++|.|++++|++|.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTTS
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 45
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=228.03 Aligned_cols=166 Identities=27% Similarity=0.409 Sum_probs=143.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+|+|++|||||||+++|. ++.+ ...+.++.+ +.....+.+++..+.+.||||+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~-~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFM-YDEF---------VEDYEPTKA------DSYRKKVVLDGEEVQIDILDTAGQEDY 75 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH-HSCC---------CTTCCTTCC------EEEEEEEEETTEEEEEEEEECCCTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHH-hCCC---------CCCCCCccc------eEEEEEEEECCEEEEEEEEcCCChhhh
Confidence 457899999999999999999983 2222 222333443 444566778898899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
..++..+++.+|++|+|||++++++|+.+..|+..+.... .++|++||+||+|+.+.+++..+++..+++.+++++++
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999999999999999998876 37999999999999877888899999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+||++|.||+++|++|++.+.++.
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999987653
No 46
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=3.8e-29 Score=224.40 Aligned_cols=159 Identities=17% Similarity=0.347 Sum_probs=133.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .++.+. . +.++++ +...+.+.+++..+.+++|||+|+++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l-~~~~~~---------~-~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRF-LTGSYQ---------V-LEKTES------EQYKKEMLVDGQTHLVLIREEAGAPD-- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHH-HHSCCC---------C-CSSCSS------SEEEEEEEETTEEEEEEEEECSSSCC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HhCCCC---------C-cCCCcc------eeEEEEEEECCEEEEEEEEECCCCch--
Confidence 4689999999999999999997 333332 1 334454 55567788899999999999999987
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCC--CCcccCHHHHHHHHHhc-CC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLA--FNRTVTTREAEMYAIKN-QM 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~--~~r~v~~ee~~~~a~~~-~~ 211 (432)
..+++++|++|+|||++++++|+.+..|+..+.... +++|++|||||+|+. .++.+..++++++++.. ++
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 143 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC
Confidence 467889999999999999999999999876665432 579999999999994 46788899999999876 68
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+|+++||++|.||+++|++|++.+.+..
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.3e-28 Score=220.11 Aligned_cols=166 Identities=30% Similarity=0.584 Sum_probs=140.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.+..+||+++|++|||||||+++| .+..+ ...+.++.| .++....+.+++..+.+.+|||+|+++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRY-VTNKF---------DTQLFHTIG-----VEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHH-HHSCC---------CC----CCS-----EEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred ccceeEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCcee-----eeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 356799999999999999999998 32222 223334444 466677888899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCCCcccCHHHHHHHHH-hcC
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQ 210 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-~~~ 210 (432)
+..++..+++.+|++|+|||++++.+++.+..|+..+.... .++|+++|+||+|+. ++++..+++.++++ ..+
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~ 147 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGD 147 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTC
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999987643 578999999999997 57788899999998 567
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.|++++|++|++.+.++
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999999998653
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=5.4e-29 Score=219.93 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=137.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .++.+ ...+.++.+ +.....+.+++..+.+.+|||+|++++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQF-VQGIF---------VEKYDPTIE------DSYRKQVEVDCQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HHCCC---------CCSCCCCSE------EEEEEEEESSSCEEEEEEEEECSSCSSTT
T ss_pred eeEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCCcc------ceEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 589999999999999999998 32333 222333443 33345667788889999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHhc-CCcEEEE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEV 216 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-~~~~~ev 216 (432)
++..+++++|++++|||++++.+|+.+..|+..+... .+++|+++|+||+|+.+++.+..+++..+++.+ +++++++
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES 146 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEe
Confidence 9999999999999999999999999999999988765 357999999999999887888899999999987 7899999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q psy3450 217 SPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~ 236 (432)
||++|.|++++|++|.+.+.
T Consensus 147 Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 147 SAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp BTTTTBSHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998873
No 49
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1e-28 Score=222.25 Aligned_cols=164 Identities=27% Similarity=0.458 Sum_probs=140.6
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .++.+. ..+.++.+ +.....+.+++..+.+++|||+|++++.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISY-TTNAFP---------GEYIPTVF------DNYSANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHH-HHSSCC---------SSCCCCSC------CEEEEEEEETTEEEEEEEECCCCSGGGT
T ss_pred cEEEEEEECCCCCCHHHHHHHH-HcCCCC---------CCcCCccc------ceeEEEEEECCEEEEEEEEECCCCHhHH
Confidence 4589999999999999999997 333332 22333443 4445667789999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHHH
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMY 205 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~~ 205 (432)
.++..+++++|++|+|||++++.+|+++. .|+..+....+++|+++|+||+|+.+. +.+..+++..+
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 99999999999999999999999999996 799999887778999999999999653 56788899999
Q ss_pred HHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 206 AIKNQM-AFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 206 a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++.+++ +++++||++|.|++++|++|.+.+.+.
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 999997 999999999999999999999998653
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.1e-28 Score=223.14 Aligned_cols=169 Identities=35% Similarity=0.608 Sum_probs=143.8
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcccccccee-EEEEEECCe---------EEE
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK-TTTILLDGK---------RVK 125 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~-~~~i~i~~~---------~v~ 125 (432)
..+..+||+|+|++|||||||+++| .+..+ ...+.+++| .++. .+.+.+++. .+.
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQY-TDGKF---------NSKFITTVG-----IDFREKRVVYRANGPDGAVGRGQRIH 71 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHH-HHSCC---------CCSCCCCCS-----EEEEEEEEEECTTSCCCSSCCCEEEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHH-hcCCC---------CcCcccccc-----eeeeeEEEEEecCCcccccccCcEEE
Confidence 4577899999999999999999998 33322 222333443 3444 456666665 789
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+.+|||+|++++..++..+++++|++|+|||++++.+++++..|+..+.... .++|+++|+||+|+.+++.+..+++.
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 151 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAR 151 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence 9999999999999999999999999999999999999999999999998766 57999999999999877788889999
Q ss_pred HHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 204 MYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 204 ~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus 152 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 152 ELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987643
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=228.52 Aligned_cols=167 Identities=35% Similarity=0.561 Sum_probs=136.5
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+++| .++.+ ...+.+++| .++....+.+++..+.+.||||+|++
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRL-CKNEF---------RENISATLG-----VDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHH-HHCCC---------C---------------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHH-HhCCC---------CccCCCCcc-----ceeEEEEEEECCEEEEEEEEECCCCc
Confidence 3456799999999999999999998 33333 222333333 36667778889999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCC------CCcccCHHHHHHHHHh
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLA------FNRTVTTREAEMYAIK 208 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~------~~r~v~~ee~~~~a~~ 208 (432)
++..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+. ..+.+..++++.+++.
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~ 168 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT 168 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765 579999999999995 4577888999999999
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.+++++++||++|.||+++|++|++.+.+
T Consensus 169 ~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 169 YGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998854
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=8e-29 Score=225.22 Aligned_cols=167 Identities=31% Similarity=0.597 Sum_probs=139.6
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+|+|++|||||||+++| .++.+. ..+.++++ .++....+.+++..+.+.+|||+|+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRF-CAGRFP---------DRTEATIG-----VDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHH-HHSSCC---------SSCCCCCS-----CCEEEEEEEETTEEEEEEEEECCCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHH-HcCCCC---------CCCCCCcc-----eEEEEEEEEECCEEEEEEEEECCCc
Confidence 34456799999999999999999997 333332 22233443 4677788888998999999999999
Q ss_pred cccc-hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 135 GRFC-TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 135 e~~~-~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
+++. .++..+++++|++|+|||++++.+|+.+..|+.++.... .++|++||+||+|+.+.+++..++++.+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 159 (189)
T 1z06_A 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 159 (189)
T ss_dssp HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC
Confidence 9998 888999999999999999999999999999999998764 6799999999999987788889999999999999
Q ss_pred cEEEEcCCCC---CCHHHHHHHHHHHHh
Q psy3450 212 AFFEVSPLCD---FNIRESFTELSRRAL 236 (432)
Q Consensus 212 ~~~evSAktg---~nI~elf~~L~~~i~ 236 (432)
+++++||++| .||+++|++|++.+.
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999999 999999999988764
No 53
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=8.3e-29 Score=218.04 Aligned_cols=161 Identities=25% Similarity=0.414 Sum_probs=139.8
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .++.+ ...+.++.+ +.....+.+++..+.+.+|||+|++++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l-~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQF-VTGTF---------IEKYDPTIE------DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHH-HHSCC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEEECCCCCCHHHHHHHH-HcCCC---------cccCCCCcc------eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 489999999999999999998 33332 222333443 44567778899999999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++++|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+++++..+++..+++.++++++++|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 99999999999999999999999999999999887754 5799999999999987788889999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy3450 218 PLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~ 236 (432)
|++|.|++++|++|.+.+.
T Consensus 147 a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 147 AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 54
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=4.3e-29 Score=231.76 Aligned_cols=166 Identities=23% Similarity=0.423 Sum_probs=139.4
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+++|++|||||||+++| .++.+. ..+.++++ ......+.+++..+.+.||||+|++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVF-AKDCFP---------ENYVPTVF------ENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHH-HHSCCC---------SSCCCCSE------EEEEEEEESSSSEEEEEEEEECCSG
T ss_pred ccceeeEEEEECCCCCCHHHHHHHH-hcCCCC---------CCcCCccc------eeEEEEEEECCEEEEEEEEeCCCcH
Confidence 4467799999999999999999998 333332 22334443 3334566778888999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCC------------CcccCHHHH
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAF------------NRTVTTREA 202 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~------------~r~v~~ee~ 202 (432)
+|..++..+++++|++|+|||++++++|+++ ..|+..+....+++|++|||||+|+.+ .+.+..+++
T Consensus 88 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 88 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHH
Confidence 9999999999999999999999999999999 799999988878899999999999964 266888999
Q ss_pred HHHHHhcC-CcEEEEcCC-CCCCHHHHHHHHHHHHhh
Q psy3450 203 EMYAIKNQ-MAFFEVSPL-CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 203 ~~~a~~~~-~~~~evSAk-tg~nI~elf~~L~~~i~~ 237 (432)
+++++.++ ++|++|||+ +|.||+++|+.|++.+++
T Consensus 168 ~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 168 ANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999887 699999999 689999999999998865
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.2e-28 Score=221.64 Aligned_cols=165 Identities=27% Similarity=0.410 Sum_probs=141.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+|+|++|||||||+++|. +..+. ..+.++.+ +.....+.+++..+.+.||||+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~-~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFM-YDEFV---------EDYEPTKA------DSYRKKVVLDGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH-HSCCC---------CSCCTTCC------EEEEEEEEETTEEEEEEEEECCCTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHh-hCCCC---------CcCCCccc------eEEEEEEEECCEEEEEEEEECCCCccc
Confidence 356899999999999999999983 22222 22233333 444566778898899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC--CCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~--~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
..++..+++.+|++|+|||++++++|+.+..|+.++..... ++|++||+||+|+.+++++..+++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999887653 7999999999999877788899999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~ 238 (432)
+||++|.||+++|++|.+.+.++
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 160 TSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998654
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=222.17 Aligned_cols=167 Identities=37% Similarity=0.638 Sum_probs=143.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+|+|++|||||||+++| .+..+ ...+.+++| .++....+.+++..+.+.||||+|+++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRF-TDDTF---------DPELAATIG-----VDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHH-HHSCC---------CTTCCCCCS-----EEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHH-HcCCC---------CccCCCccc-----eEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 345799999999999999999998 33332 222334443 466677788899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+..++..+++++|++|+|||++++.+++.+..|+.++.... .++|++||+||+|+. ++++..+++..+++.++++++
T Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEE
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999999999998765 579999999999994 467888899999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.||+++|++|.+.+.+..
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred EecCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987643
No 57
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=228.86 Aligned_cols=166 Identities=29% Similarity=0.443 Sum_probs=125.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .++.+. ..+.++++ +.....+.+++..+.+.+|||+|+++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVF-ADGAFP---------ESYTPTVF------ERYMVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHH-HC----------------CCCCC------EEEEEEEEETTEEEEEEEEEC------
T ss_pred cceEEEEEECcCCCCHHHHHHHH-HcCCCC---------CCCCCccc------eeEEEEEEECCEEEEEEEEECCCchhh
Confidence 34689999999999999999998 333332 22333443 444566788999999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++.+|+.+. .|+..+....+++|++||+||+|+..+ +.+..+++..
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 999999999999999999999999999995 799999888788999999999999764 3678889999
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+++.+++ +|+++||++|.||+++|++|++.+++..
T Consensus 176 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 176 MARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999998 9999999999999999999999987654
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=1.1e-28 Score=220.33 Aligned_cols=163 Identities=31% Similarity=0.587 Sum_probs=141.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+|+|++|||||||+++| .+..+ ...+.++.+ .++....+.+++..+.+.+|||+|++++.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l-~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRF-MYDSF---------DNTYQATIG-----IDFLSKTMYLEDRTVRLQLWDTAGQERFR 77 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHH-HHSCC---------CSSCCCCCS-----EEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCcee-----eEEEEEEEEECCeEEEEEEEECCCcHHHH
Confidence 4589999999999999999998 33332 222233333 46777888889999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
.++..+++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+++++..+++..+++..+++++++|
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999999999999987654 5799999999999987788888999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy3450 218 PLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~ 236 (432)
|++|.|++++|++|.+.+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988663
No 59
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=228.90 Aligned_cols=167 Identities=25% Similarity=0.345 Sum_probs=137.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+|+|++|||||||+++| .++.+ ...+.++.+ ......+.+++..+.+.||||+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQF-VEGEF---------SEGYDPTVE------NTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHH-HHSCC---------CSCCCCCSE------EEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCcCHHHHHHHH-HhCCC---------CCCCCCccc------eEEEEEEEECCEEEEEEEEECCCccch
Confidence 46799999999999999999998 33333 222333433 333556666777899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
..++..+++++|++|+|||++++++|+.+..|+..+.... .++|++||+||+|+..++.+..+++..+++.++++|++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999999999999999998763 57899999999999888889999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 216 VSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+||++|.||+++|++|++.+.+...
T Consensus 166 ~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 166 SSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred EeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999976543
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=2.8e-28 Score=219.97 Aligned_cols=165 Identities=27% Similarity=0.453 Sum_probs=139.0
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++|. +..+ ...+.++.+ +.....+.+++..+.+.+|||+|++++.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~-~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLI-QNHF---------VDEYDPTIE------DSYRKQVVIDGETCLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH-HSSC---------CCCCCTTCC------EEEEEEEEETTEEEEEEEEECCCC---C
T ss_pred cEEEEEEECCCCCCHHHHHHHHH-hCCC---------CCCCCCCch------heEEEEEEECCcEEEEEEEECCCcHHHH
Confidence 46899999999999999999983 3222 222223332 5566777889999999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
.++..+++.+|++++|||++++.+|+.+..|+..+.... .++|+++|+||+|+. ++.+..+++..+++.++++++++
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIET 145 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999999999999999999988754 579999999999996 46778889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 217 SPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~~ 240 (432)
||++|.|++++|++|.+.+.+...
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999976543
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=224.18 Aligned_cols=165 Identities=30% Similarity=0.404 Sum_probs=140.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .+..+ ...+.++++ ......+.+++..+.+.+|||+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRF-LTKRF---------IWEYDPTLE------STYRHQATIDDEVVSMEILDTAGQED- 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHH-HHSCC---------CSCCCTTCC------EEEEEEEEETTEEEEEEEEECCCCCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHH-HhCCC---------CcccCCCCC------ceEEEEEEECCEEEEEEEEECCCCCc-
Confidence 35689999999999999999998 33333 222334443 33455677889899999999999988
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
..++..+++.+|++|+|||++++++|+++..|+..+.... +++|++||+||+|+.+.+++..+++..+++.+++++++
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 168 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYE 168 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEE
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEE
Confidence 7788899999999999999999999999999999887753 57999999999999877889999999999999999999
Q ss_pred EcCCCCC-CHHHHHHHHHHHHhhhc
Q psy3450 216 VSPLCDF-NIRESFTELSRRALQRN 239 (432)
Q Consensus 216 vSAktg~-nI~elf~~L~~~i~~~~ 239 (432)
+||++|. ||+++|++|++.+.++.
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 9999999 99999999999987654
No 62
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=4.1e-28 Score=223.37 Aligned_cols=164 Identities=29% Similarity=0.468 Sum_probs=139.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .+..+. ..+.++++ ......+.+++..+.+.+|||+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVF-SKDQFP---------EVYVPTVF------ENYIADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHH-HHSSCC---------SSCCCSSC------CCCEEEEEETTEEEEEEEECCCCSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHH-HhCcCC---------cccCCccc------ceEEEEEEECCEEEEEEEEECCCchhH
Confidence 46789999999999999999997 333332 22333443 222345678888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++++|+.+ ..|+..+....+++|+++|+||+|+.+. +.+..+++.+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 99999999999999999999999999999 7899999887778999999999999764 5678889999
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++..++ +++++||++|.||+++|++|++.+++
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 89999999999999999999998753
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=1.8e-28 Score=219.63 Aligned_cols=168 Identities=32% Similarity=0.572 Sum_probs=128.2
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCCc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQG 135 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~e 135 (432)
.+..+||+++|++|||||||+++| .+..+. ..+.+++| .++....+.++ +..+.+.+|||+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRY-VNDKYS---------QQYKATIG-----ADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHH-HHSCCC---------TTC---CC-----CSCEEEEECCSSSCCEEEEEECCC---
T ss_pred cCceEEEEEECCCCCCHHHHHHHH-HhCcCC---------cccCCccc-----eEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 356799999999999999999998 333322 22333333 36666777776 567889999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCC-CCcccCHHHHHHHHH-h
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLA-FNRTVTTREAEMYAI-K 208 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~-~~r~v~~ee~~~~a~-~ 208 (432)
++..++..+++++|++|+|||++++.+|+.+..|+.++.... .++|+++|+||+|+. ..+.+..+++.++++ .
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~ 149 (182)
T 1ky3_A 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL 149 (182)
T ss_dssp -------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT
T ss_pred HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887653 578999999999995 345678888999988 5
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.+++++++||++|.||+++|++|.+.+.+++
T Consensus 150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 150 GDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999987654
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=7.3e-29 Score=230.36 Aligned_cols=171 Identities=32% Similarity=0.609 Sum_probs=143.5
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe----------E
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK----------R 123 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~----------~ 123 (432)
...++..+||+|+|++|||||||+++| .+..+ ...+.++++ +++..+.+.+++. .
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l-~~~~~---------~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRY-TDNKF---------NPKFITTVG-----IDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHH-HCSCC---------CCEEEEEEE-----EEEEEEEEEEEC-------CCEEE
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHH-hcCCC---------CcCCCCcee-----EEEEEEEEEECCccccccccCcee
Confidence 345677899999999999999999998 33332 222333332 3566666777766 7
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTRE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee 201 (432)
+.+.||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+++.+..++
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 899999999999999999999999999999999999999999999998887654 579999999999998778888999
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 202 AEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 202 ~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++++++.++++++++||++|.||+++|++|++.+.++.
T Consensus 164 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 164 ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987643
No 65
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=2.9e-29 Score=225.33 Aligned_cols=163 Identities=30% Similarity=0.516 Sum_probs=126.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| ....+. ..+.++++ +.....+.+++..+.+++|||+|++++.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISY-TSNTFP---------TDYVPTVF------DNFSANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHH-HHSCCC-------------------------CBCCCC-------CEEECCCC-CTTT
T ss_pred ceEEEEEECCCCCCHHHHHHHH-hcCCCC---------CCCCCeee------eeEEEEEEECCEEEEEEEEECCCChhhh
Confidence 4689999999999999999998 333332 22223332 1112233456777889999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCcc----------cCHHHHHHHHH
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNRT----------VTTREAEMYAI 207 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r~----------v~~ee~~~~a~ 207 (432)
.++..+++++|++|+|||++++.+|+++. .|+..+....+++|+++|+||+|+.+++. +..+++.++++
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999996 79999998877899999999999976554 47888999999
Q ss_pred hcCC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 208 KNQM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 208 ~~~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.+++ +|+++||++|.||+++|++|++.+++
T Consensus 151 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 151 LIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 9997 99999999999999999999998753
No 66
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=4.7e-28 Score=222.15 Aligned_cols=167 Identities=22% Similarity=0.300 Sum_probs=136.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
+..+||+++|++|||||||+++|... ..|. ..+ +++| .++..+.+.+++..+.+.+|||+|++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~---------~~~-~~~~-----~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMD---------SDX-EVLG-----EDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------GGGC-----TTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcC---------ccc-cccc-----eeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 34689999999999999999997321 1111 111 1122 366777888999999999999999876
Q ss_pred -cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcE
Q psy3450 137 -FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213 (432)
Q Consensus 137 -~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~ 213 (432)
+..+...|++.+|++|+|||+++++||+.+..|+..+.... +++|+++|+||+|+..++.+..+++..++..++++|
T Consensus 69 ~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~ 148 (192)
T 2cjw_A 69 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKF 148 (192)
T ss_dssp --CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEE
T ss_pred hhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCce
Confidence 56677888999999999999999999999999998887653 579999999999998778888888889999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+|+||++|.||+++|+++++.+..+.
T Consensus 149 ~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 149 IETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999886543
No 67
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=5.7e-28 Score=219.54 Aligned_cols=164 Identities=27% Similarity=0.472 Sum_probs=137.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeE--------------
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR-------------- 123 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~-------------- 123 (432)
+..+||+|+|++|||||||+++| .+..+. ..+.+++| .++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRL-TKDTFH---------ENTNTTIG-----ASFCTYVVNLNDINIKNNSNNEKNNNIN 69 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHH-HHSCCC---------SSCCCCCS-----CEEEEEEEETTC----------------
T ss_pred CcceEEEEECCCCCCHHHHHHHH-HhCcCC---------CCcCcccc-----ceeEEEEEEecCcccccccccccccccc
Confidence 46799999999999999999998 333332 22233333 35555555565544
Q ss_pred -----------------------EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCC
Q psy3450 124 -----------------------VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180 (432)
Q Consensus 124 -----------------------v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~i 180 (432)
+.+.||||||++++..++..+++.+|++|+|||++++.+++++..|+..+..... .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~ 148 (208)
T 3clv_A 70 SINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-Y 148 (208)
T ss_dssp ---------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-C
T ss_pred ccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-C
Confidence 8899999999999999999999999999999999999999999999999987654 8
Q ss_pred cEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 181 PiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
|+++|+||+| ..++++..+++.++++..+++++++||++|.|++++|++|.+.+.++
T Consensus 149 piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 149 IIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999 55678889999999999999999999999999999999999988664
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=217.06 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=136.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .++.+ ...+.++.+ ......+..++..+.+.+|||+|++++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRF-VKGTF---------RESYIPTVE------DTYRQVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHH-HTCCC---------CSSCCCCSC------EEEEEEEEETTEEEEEEEEECCSCSSCH
T ss_pred CceEEEEECCCCCCHHHHHHHH-HcCCC---------CCCCCCCcc------ccEEEEEEECCEEEEEEEEECCCchhhH
Confidence 3589999999999999999998 33332 222333443 3334556678888999999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
.++..+++.+|++|+|||++++++++.+..|+..+.+.. +++|+++|+||+|+.+.+++..+++..+++.+++++++
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 999999999999999999999999999999988887653 57999999999999877888888899999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHh
Q psy3450 216 VSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~ 236 (432)
+||++|.|++++|++|.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC
T ss_pred ecCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999998663
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.5e-30 Score=235.86 Aligned_cols=173 Identities=40% Similarity=0.682 Sum_probs=137.5
Q ss_pred ccccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 51 ~~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
.......+..+||+|+|++|||||||+++| .+.. +...+.++.+ .++....+.+++..+.+.|||
T Consensus 24 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l-~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~D 88 (199)
T 3l0i_B 24 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRF-ADDT---------YTESYISTIG-----VDFKIRTIELDGKTIKLQIWD 88 (199)
T ss_dssp -CC-CCCSEEEEEEEECCTTSCCTTTTTSS-BCCC---------CCCHHHHHHC-----CSEEEEEEEETTEEEEEEEEC
T ss_pred cccCcccCcceEEEEECCCCCCHHHHHHHH-hcCC---------CCCCcCCccc-----ceEEEEEEEECCEEEEEEEEE
Confidence 344455678899999999999999999997 3332 2222233332 477778888999999999999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhc
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN 209 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~ 209 (432)
|+|++++..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+++.+..++++.+++.+
T Consensus 89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~ 168 (199)
T 3l0i_B 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL 168 (199)
T ss_dssp CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT
T ss_pred CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998765 47999999999999888888888888999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+++++++||++|.||+++|++|++.+.++
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999877543
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.2e-28 Score=226.04 Aligned_cols=168 Identities=23% Similarity=0.356 Sum_probs=112.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe--EEEEEEEeCCCCc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK--RVKLQLWDTSGQG 135 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~--~v~l~i~Dt~G~e 135 (432)
...+||+|+|++|||||||+++| .+... .+...+.+++| +++....+.+++. .+.+.+|||+|++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l-~~~~~-------~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMF-TSKGS-------KFLKDYAMTSG-----VEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEEC-----------------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred ccceEEEEECCCCCCHHHHHHHH-HhCCC-------cccCCCCCccc-----eEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 56799999999999999999997 22200 22222333332 3566777888887 8999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCC----CCcEEEEEECccCCC-CcccCHHHHHHHHHhcC
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP----GVPKVLVGNRLHLAF-NRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~----~iPiILVgNK~DL~~-~r~v~~ee~~~~a~~~~ 210 (432)
++..++..+++++|++|+|||++++.+|+.+..|+..+....+ ++|++||+||+|+.+ ++.+..+++.++++.++
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT 164 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999988754 799999999999987 78889999999999999
Q ss_pred CcEEEEcCCC-CCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLC-DFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAkt-g~nI~elf~~L~~~i~~~ 238 (432)
++++++||++ |.||+++|++|++.+.+.
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp CEEEECCC-------CHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999988654
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-28 Score=223.19 Aligned_cols=168 Identities=42% Similarity=0.701 Sum_probs=142.2
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+++| .+..+. ..+.++++ .++....+.+++..+.+.||||+|++
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRF-VEDKFN---------PSFITTIG-----IDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHH-HHCCCC---------CSSSCCCS-----CCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CCCcceEEEEECCCCCCHHHHHHHH-HhCCCC---------cccCCccc-----ceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3456799999999999999999998 333332 22233333 46777788889989999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++.+|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+ .++.+..+++..+++.++++++
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999998766 46999999999999 4577888899999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
++||++|.||+++|++|.+.+.++.
T Consensus 160 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 160 ESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp ECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=4.5e-28 Score=222.57 Aligned_cols=168 Identities=32% Similarity=0.631 Sum_probs=141.3
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
.+..+||+|+|++|||||||+++| .+..+. ..+.+++| .++....+.+++..+.+.+|||+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-----~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQY-VNKKFS---------NQYKATIG-----ADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHH-HHSCCC---------SSCCCCCS-----EEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHH-HcCCCC---------CCCCCccc-----ceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456799999999999999999998 333322 22333443 466777788888889999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCCcEEEEEECccCCCCcccCHHHHHHHHH-hcC
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-KNQ 210 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-~~~ 210 (432)
+..++..+++++|++|+|||++++.+|+.+..|+.++.... .++|++||+||+|+. ++.+..+++..+++ ..+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~ 148 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNN 148 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTS
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999887654 468999999999997 56778888888888 667
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++++++||++|.||+++|++|++.+.++..
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999976543
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.4e-28 Score=221.94 Aligned_cols=165 Identities=29% Similarity=0.480 Sum_probs=137.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .++.+. ..+.++.+ +.....+.+++..+.+.+|||+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVF-SKDEFP---------EVYVPTVF------ENYVADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHH-HHSSCC----------------C------CEEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred ccCcEEEEECcCCCCHHHHHHHH-hcCCCC---------CcCCCccc------ceEEEEEEECCEEEEEEEEECCCcHHH
Confidence 34689999999999999999998 333332 22333443 333445778898999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++++|+.+ ..|+..+....+++|+++|+||+|+... +.+..+++..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 99999999999999999999999999999 7899999887778999999999999654 5678888999
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+++..++ +++++||++|.||+++|++|.+.+++.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999988 999999999999999999999998754
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=1.5e-27 Score=209.39 Aligned_cols=161 Identities=29% Similarity=0.455 Sum_probs=137.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++|. +..+. ..+.++.+ +.....+.+++..+.+.+|||+|++++..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~-~~~~~---------~~~~~~~~------~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLI-QNHFV---------DECDPTIE------DSYRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH-HSSCC---------SCCCTTCC------EEEEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eeEEEEECCCCCCHHHHHHHHH-hCcCc---------cccCCccc------eEEEEEEEECCEEEEEEEEECCCchhhhH
Confidence 4799999999999999999983 33332 22223333 44456677888899999999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEEc
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~evS 217 (432)
++..+++.+|++++|||++++++++++..|+..+.... .++|+++|+||+|+.. +.+..+++.+++++++++++++|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEec
Confidence 99999999999999999999999999999999988765 3799999999999976 66778889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++|.|++++|++|.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=1.8e-27 Score=215.97 Aligned_cols=164 Identities=28% Similarity=0.434 Sum_probs=129.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
-..+||+++|++|||||||+++|. ++.+. ..+.++.+ +.....+.+++..+.+.+|||+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~-~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLI-QNHFV---------DEYDPTIE------DSYRKQVVIDGETCLLDILDTAGQEEY 82 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH-HSSCC---------SCCCTTCC------EEEEEEEEETTEEEEEEEEECCC----
T ss_pred cceeEEEEECcCCCCHHHHHHHHH-cCCCc---------cccCCccc------eEEEEEEEECCEEEEEEEEECCChHHH
Confidence 356899999999999999999983 33332 12222332 444567778898999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~e 215 (432)
..++..+++.+|++++|||+++..+|+++..|+..+.... .++|+++|+||+|+.. +.+..++++++++.+++++++
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIE 161 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999999999999987754 4799999999999975 667888999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 216 VSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 216 vSAktg~nI~elf~~L~~~i~~~ 238 (432)
+||++|.|++++|++|.+.+.+.
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988664
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1e-28 Score=224.09 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=137.0
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCc--CccccCCCccccccceeEEEE-EECCeEEEEEEEeCC
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSE--SPFCSGSGKYDDMLAYKTTTI-LLDGKRVKLQLWDTS 132 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~--~~~~~~ig~~~~tid~~~~~i-~i~~~~v~l~i~Dt~ 132 (432)
..+..+||+++|++|||||||++.+ .+.+...+...... ....+++| .++....+ .+++..+.+++|||+
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l--~~~~~~~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWI--YSKVPEGRKGEMVSLATEDERTLF-----FDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHH--HHTSCGGGBCCCEEEECSSCEEEE-----EEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccccEEEEECCCCCCHHHHHHHH--Hhhcccccccccccccccccccee-----eeecccccccccCCceEEEEEeCC
Confidence 4467899999999999999999654 23333222111000 00111221 13333333 456778999999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCC------CCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDIT------NKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt------~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
|+++|..++..+++++|++|+|||++ +.++|+.+..|+.++....+++|++||+||+|+.+ .+..+++++++
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~ 160 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVV 160 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc--ccCHHHHHHHH
Confidence 99999999999999999999999999 56788888889988865557899999999999964 47889999999
Q ss_pred HhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 207 IKNQM-AFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 207 ~~~~~-~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
+.+++ +++++||++|.||+++|++|++.+.++.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999 99999999999999999999999987654
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=8.8e-28 Score=223.20 Aligned_cols=176 Identities=24% Similarity=0.436 Sum_probs=140.1
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEeCCCCc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWDTSGQG 135 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~Dt~G~e 135 (432)
.+..+||+|+|++|||||||+++| ....+...+.++.+ ..+....+.. ++..+.+.+|||+|++
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l----------~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRV----------LDGRFEKNYNATVG-----AVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBC----------TTCSTTCEEETTTT-----EEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred ccCccEEEEECCCCCCHHHHHHHH----------hcCCCCCCCCCccc-----eeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 456799999999999999999997 33333333444443 1233333333 3445889999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
.+..++..+++++|++|+|||++++.+|+++..|+..+.... .++|++||+||+|+.+.+++..+++..+++..+++++
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYF 152 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEE
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEE
Confidence 999999999999999999999999999999999999998765 4589999999999988778899999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcCCcccccc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNGMERLWRS 247 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~ 247 (432)
++||++|.||+++|++|++.+.+..........
T Consensus 153 ~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~ 185 (218)
T 4djt_A 153 EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNV 185 (218)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCC
T ss_pred EEecCCCCCHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999876655444333
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=4.8e-28 Score=223.79 Aligned_cols=162 Identities=26% Similarity=0.466 Sum_probs=136.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| ..+.+. ..+.++.+ +.....+.+++..+.+.||||+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISY-TTNAFP---------GEYIPTVF------DNYSANVMVDGKPVNLGLWDTAGLEDY 91 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHH-HHSCCC---------C-CCCCSE------EEEEEEEECC-CEEEEEEEEECCSGGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHH-HhCCCC---------CCcCCeec------ceeEEEEEECCEEEEEEEEECCCchhh
Confidence 45689999999999999999997 333332 22223333 556677778888999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCc------------ccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNR------------TVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r------------~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++.+|+++. .|+..+....+++|++||+||+|+...+ .+..+++..
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 999999999999999999999999999996 8999999887889999999999997643 378888999
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i 235 (432)
+++..++ +++++||++|.||+++|++|++.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999987 699999999999999999998764
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=5.1e-28 Score=225.72 Aligned_cols=173 Identities=21% Similarity=0.483 Sum_probs=144.7
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+++|++|||||||+++| .. +.+...+.++.| .++....+.+++..+.+.||||+|+
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~-~~---------~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRH-LT---------GEFEKKYVATLG-----VEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTB-HH---------HHHTCEEETTTT-----EEEEEEEEEETTEEEEEEEEEECSG
T ss_pred CCcccceEEEEECCCCCCHHHHHHHH-Hc---------CCCCCCCCCccc-----eeEEEEEEEECCEEEEEEEEeCCCh
Confidence 34567799999999999999999996 22 222233444554 3566667778899999999999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
+.+..++..+++++|++|+|||++++.+|+.+..|+..+....+++|++||+||+|+.+.+ +. +++..+++..+++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK-VK-AKSIVFHRKKNLQYY 152 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCS-SC-GGGCCHHHHHTCEEE
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccc-cc-HHHHHHHHHcCCEEE
Confidence 9999999999999999999999999999999999999999888889999999999996543 22 356678888899999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhhcCCccc
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQRNGMERL 244 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~~~~~~~ 244 (432)
++||++|.||+++|++|.+.+.........
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l~~~~~~~~~ 182 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKLIGDPNLEFV 182 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHHHTCTTCCEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999877654433
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=1.4e-27 Score=217.75 Aligned_cols=169 Identities=19% Similarity=0.298 Sum_probs=125.4
Q ss_pred ccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcC-ccccCCCccccccceeEEEEEECCeEEEEEEEeC
Q psy3450 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSES-PFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDT 131 (432)
Q Consensus 53 ~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~-~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt 131 (432)
+........||+|+|++|||||||+++| .+.. +.. .+.+++| +....+. +..+.+.||||
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l-~~~~---------~~~~~~~~t~~-------~~~~~~~--~~~~~~~i~Dt 70 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQV-KPAQ---------SSSKHITATVG-------YNVETFE--KGRVAFTVFDM 70 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHH-SCCC-------------CCCCCSS-------EEEEEEE--ETTEEEEEEEE
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHH-hcCC---------Ccccccccccc-------eeEEEEE--eCCEEEEEEEC
Confidence 3445667889999999999999999998 3333 322 2344443 3333333 44578999999
Q ss_pred CCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---------CCCcEEEEEECccCCCCcc---cCH
Q psy3450 132 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---------PGVPKVLVGNRLHLAFNRT---VTT 199 (432)
Q Consensus 132 ~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---------~~iPiILVgNK~DL~~~r~---v~~ 199 (432)
+|++++..++..+++++|++|+|||++++++|+++..|+..+.... +++|++||+||+|+..... +..
T Consensus 71 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 150 (199)
T 4bas_A 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE 150 (199)
T ss_dssp CCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998886542 2789999999999975422 111
Q ss_pred HHHH-HHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 200 REAE-MYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 200 ee~~-~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
.... .+++..+++++++||++|.||+++|++|++.+.++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 151 ILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp HHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred HhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 1111 1124567899999999999999999999999977643
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=216.77 Aligned_cols=164 Identities=26% Similarity=0.376 Sum_probs=137.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .++.+ ...+.++++ ......+..++..+.+.+|||+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l-~~~~~---------~~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRF-VKGTF---------RDTYIPTIE------DTYRQVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHH-HHSCC---------CCTTSCCCC------EEEEEEEEETTEEEEEEEEECCGGGSC
T ss_pred CCeeEEEEECCCCCcHHHHHHHH-HcCCC---------CCcccCccc------cceeEEEEECCEEEEEEEEeCCChHHh
Confidence 34689999999999999999998 33332 222333443 333455677888899999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
..++..+++.+|++|+|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+ +.+..+++..+++.++++++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEE
Confidence 9999999999999999999999999999988888776643 4689999999999964 66788889999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 215 EVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++||++|.||+++|++|++.+.++
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEecCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999887553
No 82
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.5e-27 Score=216.47 Aligned_cols=166 Identities=19% Similarity=0.354 Sum_probs=123.9
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE---CCeEEEEEEEeCCCCcc
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~Dt~G~e~ 136 (432)
.+||+++|++|||||||+++| .+.. ..+...+.+++| +++....+.+ ++..+.+.+|||+|+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l-~~~~-------~~~~~~~~~t~g-----~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQL-MKTK-------KSDLGMQSATVG-----IDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHH-TCC------------------CS-----EEEEEEEC---------CEEEEEEECSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH-hcCC-------CccCCCcceecc-----EEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 479999999999999999998 2210 011122333443 3554444433 34577899999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCC-CChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC---HHHHHHHHHhcCCc
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNK-WSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT---TREAEMYAIKNQMA 212 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~-~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~---~ee~~~~a~~~~~~ 212 (432)
|..+++.++++++++++|||++++ .+|+.+..|+.++....+++|++|||||+|+.+.+.+. .+.+..+++.++++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998 58999999999998777789999999999997655443 34456677677776
Q ss_pred ----EEEEcCCCCC-CHHHHHHHHHHHHhhh
Q psy3450 213 ----FFEVSPLCDF-NIRESFTELSRRALQR 238 (432)
Q Consensus 213 ----~~evSAktg~-nI~elf~~L~~~i~~~ 238 (432)
|+++||++|. +++++++.|.+.+.+.
T Consensus 149 ~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 149 AIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred chhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 9999999997 9999999999888653
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=1.8e-26 Score=204.74 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=123.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| ..+.+. .+.+++ .+....+.+++ +.+.+|||+|++++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l-~~~~~~----------~~~~t~-------~~~~~~~~~~~--~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRL-QVGEVV----------TTIPTI-------GFNVETVTYKN--LKFQVWDLGGLTSIR 65 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHH-HHSSCC----------CCCCCS-------SEEEEEEEETT--EEEEEEEECCCGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHH-hcCCCC----------CcCCcC-------ccceEEEEECC--EEEEEEECCCChhhh
Confidence 4589999999999999999998 333321 122333 34455566664 678999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHH-----HHHhcCC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEM-----YAIKNQM 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~-----~a~~~~~ 211 (432)
.++..+++++|++|+|||++++++|+.+..|+..+.... .++|+++|+||+|+.+... .++... +++..++
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKW 143 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCce
Confidence 999999999999999999999999999999988876543 5799999999999965432 222222 2233456
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++||++|.|++++|++|.+.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999998854
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=3.9e-27 Score=207.86 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=118.4
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
+||+++|++|||||||+++| .++.+.. +.+++ .+....+..+ .+.+.+|||+|++++..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l-~~~~~~~----------~~~t~-------~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKL-KLGEIVT----------TIPTI-------GFNVETVEYK--NISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHH-HHHCSSC----------CCCCS-------SCCEEEEECS--SCEEEEEECCCCGGGHHH
T ss_pred CEEEEECCCCCCHHHHHHHH-HcCCcCc----------ccCcC-------ceeEEEEEEC--CEEEEEEEcCCChhhHHH
Confidence 58999999999999999998 3333321 12333 2333444443 477899999999999999
Q ss_pred hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH-----HHhcCCcE
Q psy3450 141 IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY-----AIKNQMAF 213 (432)
Q Consensus 141 ~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~-----a~~~~~~~ 213 (432)
+..+++++|++|+|||++++++|+.+..|+..+.... +++|+++|+||+|+.++ ...++.... ++..++++
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEE
Confidence 9999999999999999999999999999998887642 57999999999999653 222322221 11234579
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 214 FEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++||++|.||+++|++|.+.+.+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEcccCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999988743
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=4.3e-27 Score=215.63 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=123.5
Q ss_pred cccccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEE-CCeEEEEEEEe
Q psy3450 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL-DGKRVKLQLWD 130 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i-~~~~v~l~i~D 130 (432)
......+..+||+++|++|||||||++++ .+. +. .....+.+ .........+ ++..+.+++||
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l-~~~-~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~D 75 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVV-FHK-MS---------PNETLFLE-----STNKIYKDDISNSSFVNFQIWD 75 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHH-HSC-CC---------GGGGGGCC-----CCCSCEEEEECCTTSCCEEEEE
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHH-Hhc-CC---------Ccceeeec-----cccceeeeeccCCCeeEEEEEE
Confidence 33445667899999999999999999976 221 21 11112221 0111122223 35678899999
Q ss_pred CCCCcccchhh---hhcccCceEEEEEEeCCCC--CChhhHHHHHHHHHhhCCCCcEEEEEECccCCC-------CcccC
Q psy3450 131 TSGQGRFCTII---RSYSRGAQGILLVYDITNK--WSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF-------NRTVT 198 (432)
Q Consensus 131 t~G~e~~~~l~---~~~~~~ad~iIlV~Dvt~~--~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~-------~r~v~ 198 (432)
|+|+++|..+. ..+++++|++|+|||++++ ++++.+..|+.++....+++|++|||||+|+.. .+.+.
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~ 155 (196)
T 3llu_A 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIH 155 (196)
T ss_dssp CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHH
Confidence 99999987776 7999999999999999998 566677778887766678899999999999854 35666
Q ss_pred HHHHHHHHH----hcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 199 TREAEMYAI----KNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 199 ~ee~~~~a~----~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+++..+++ .++++|+++||++ .||+++|+.|++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 156 QRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 777888888 6788999999999 99999999999875
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=2.3e-26 Score=211.74 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=120.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .++.+. .+.++++ .....+.+++ +.+++|||+|++++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l-~~~~~~----------~~~~t~~-------~~~~~~~~~~--~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHML-KDDRLG----------QHVPTLH-------PTSEELTIAG--MTFTTFDLGGHIQARR 84 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHH-SCC----------------CCCC-------CSCEEEEETT--EEEEEEEECC----CC
T ss_pred CcEEEEECCCCCCHHHHHHHH-hcCCCC----------ccCCCCC-------ceeEEEEECC--EEEEEEECCCcHhhHH
Confidence 479999999999999999997 333332 1233443 2235566777 7889999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh---------
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK--------- 208 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~--------- 208 (432)
++..+++++|++|+|||++++++|+++..|+.++.+.. .++|+++|+||+|+.. .+..+++.+++..
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccc
Confidence 99999999999999999999999999999999887642 5799999999999964 5677888777653
Q ss_pred --------cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 --------NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 --------~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.++++++|||++|.||+++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 24589999999999999999999764
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=4.9e-26 Score=207.95 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=124.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||++++ .++.+. .+.+++ ......+.+++ +.+.+|||+|++++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l-~~~~~~----------~~~~t~-------~~~~~~~~~~~--~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHML-KNDRLA----------TLQPTW-------HPTSEELAIGN--IKFTTFDLGGHIQAR 81 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHH-HHSCCC----------CCCCCC-------SCEEEEEEETT--EEEEEEECCCSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHH-hcCCCC----------ccccCC-------CCCeEEEEECC--EEEEEEECCCCHHHH
Confidence 3479999999999999999997 333332 122344 33456667777 778999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHHh--------
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-------- 208 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-------- 208 (432)
.++..+++++|++|+|||++++++|+++..|+.++.... .++|+++|+||+|+.+ .+..+++.+++..
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQR 159 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCcccccccc
Confidence 999999999999999999999999999999999887642 6799999999999964 5667777666543
Q ss_pred ----cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 ----NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 ----~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.+++|+++||++|.||+++|++|.+.
T Consensus 160 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 160 IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 34689999999999999999999753
No 88
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=6.1e-26 Score=223.47 Aligned_cols=165 Identities=27% Similarity=0.451 Sum_probs=141.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++| ..+.+. ..+.++++ +.....+.+++..+.+++|||+|++.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISY-TTNAFP---------GEYIPTVF------DNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHH-HHSCCC---------CSCCCCSE------EEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred ccceeEEEEECCCCCChHHHHHHH-HhCCCC---------cccCCccc------ceeEEEEEECCEEEEEEEEeCCCchh
Confidence 345689999999999999999997 333332 22233333 55566778899999999999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCC------------cccCHHHHH
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAE 203 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~------------r~v~~ee~~ 203 (432)
+..++..+++++|++|+|||++++.+|+++. .|+..+....+++|+++|+||+|+... +.+..+++.
T Consensus 216 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 9999999999999999999999999999996 799999888778999999999999653 678889999
Q ss_pred HHHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 204 MYAIKNQM-AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 204 ~~a~~~~~-~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.+++..++ +|+++||++|.||+++|+.|++.+++
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 99999997 99999999999999999999998865
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.9e-26 Score=205.02 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=121.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .++.+. .+.+++| +....+.+++ +.+.+|||+|++++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l-~~~~~~----------~~~~t~~-------~~~~~~~~~~--~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQF-SMNEVV----------HTSPTIG-------SNVEEIVINN--TRFLMWDIGGQESLR 74 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHH-HTTSCE----------EEECCSC-------SSCEEEEETT--EEEEEEECCC----C
T ss_pred CccEEEEECCCCCCHHHHHHHH-hcCCCC----------cCcCCCc-------cceEEEEECC--EEEEEEECCCCHhHH
Confidence 4689999999999999999998 333322 2334443 3334555665 778999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcCC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQM 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~~ 211 (432)
.++..+++++|++|+|||++++++|+++..|+..+... ..+.|+++|+||+|+.+ ....+++.+... ..++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCc
Confidence 99999999999999999999999999999999998775 26799999999999964 234455444332 3456
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++||++|.||+++|++|++.+..
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999998844
No 90
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.3e-28 Score=225.04 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=135.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .++.+. ..+.++.+ +.....+.+++..+.+++|||+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISY-TTNAFP---------GEYIPTVF------DNYSANVMVDGKPVNLGLWDTAGQEDY 91 (204)
Confidence 45689999999999999999997 333332 22233333 334455667788889999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHH-HHHHHHHhhCCCCcEEEEEECccCCCCc------------ccCHHHHHH
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGID-RWLKEVEEHAPGVPKVLVGNRLHLAFNR------------TVTTREAEM 204 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~DL~~~r------------~v~~ee~~~ 204 (432)
..++..+++++|++|+|||++++.+|+++. .|+..+....+++|+++|+||+|+.+.+ .+..+++..
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 999999999999999999999999999996 8999888776789999999999996543 566778888
Q ss_pred HHHhcCC-cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 205 YAIKNQM-AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 205 ~a~~~~~-~~~evSAktg~nI~elf~~L~~~i 235 (432)
+++..++ +++++||++|.||+++|++|++.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 8888887 999999999999999999998765
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=205.98 Aligned_cols=162 Identities=16% Similarity=0.244 Sum_probs=125.8
Q ss_pred ccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 55 ~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
......+||+++|++|||||||+++|.....+. ..+.+++ .+....+.+++ +.+.+|||+|+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~t~-------~~~~~~~~~~~--~~~~l~Dt~G~ 77 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQS---------QNILPTI-------GFSIEKFKSSS--LSFTVFDMSGQ 77 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCC---------SSCCCCS-------SEEEEEEECSS--CEEEEEEECCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCC---------CCcCCcc-------ceeEEEEEECC--EEEEEEECCCC
Confidence 334567999999999999999999982221121 1122333 45556666665 67899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCcccCHHHHHHHHH---
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAI--- 207 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v~~ee~~~~a~--- 207 (432)
+++..++..+++++|++|+|||++++++|+++..|+..+.... .++|+++|+||+|+.+ .+..+++.+++.
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~ 155 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLEN 155 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhh
Confidence 9999999999999999999999999999999999998887653 4799999999999964 345566666553
Q ss_pred --hcCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 208 --KNQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 208 --~~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
..+++++++||++|.||+++|++|.+.+.
T Consensus 156 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 156 IKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 23578999999999999999999998763
No 92
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=1.4e-25 Score=206.03 Aligned_cols=167 Identities=41% Similarity=0.700 Sum_probs=142.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
++.+||+++|++|||||||+++| .+..+. ..+.+++| +++....+.+++..+.+.+|||+|++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l-~~~~~~---------~~~~~t~~-----~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRF-TRNEFN---------LESKSTIG-----VEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHH-HHSCCC---------C---CCCS-----CEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred cceEEEEEECcCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----eeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 56799999999999999999997 333332 22233443 4667778889999999999999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEEEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ev 216 (432)
..++..++++++++|+|||+++..+|+++..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++.+.++.++++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~ 147 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIET 147 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEE
Confidence 8888899999999999999999999999999998887654 568999999999998777888889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 217 SPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~~ 239 (432)
||+++.|++++|+.|.+.+.+..
T Consensus 148 Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987643
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1.7e-25 Score=202.10 Aligned_cols=158 Identities=17% Similarity=0.261 Sum_probs=124.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .... ...+.+++ .+....+.+++ +.+.+|||+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l----------~~~~-~~~~~~t~-------~~~~~~~~~~~--~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKF----------NGED-VDTISPTL-------GFNIKTLEHRG--FKLNIWDVGGQKSL 75 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH----------TTCC-CSSCCCCS-------SEEEEEEEETT--EEEEEEEECCSHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHH----------hcCC-CCcccccC-------ccceEEEEECC--EEEEEEECCCCHhH
Confidence 35689999999999999999998 2222 22233344 34455566654 67899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~ 210 (432)
..++..+++++|++|+|||++++++|+++..|+..+... .+++|+++|+||+|+.++. ..++..+... ..+
T Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (186)
T 1ksh_A 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHH 153 (186)
T ss_dssp HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCc
Confidence 999999999999999999999999999999999888764 2679999999999996543 3344333221 345
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++++||++|.|++++|++|.+.+.+
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred eEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999998854
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=5.4e-26 Score=205.26 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=121.6
Q ss_pred cccccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 54 ~~~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.......+||+++|++|||||||+++| .++.+ ..+.+++| +....+.+++ +.+.+|||+|
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l-~~~~~----------~~~~~t~~-------~~~~~~~~~~--~~~~i~Dt~G 74 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQF-SMNEV----------VHTSPTIG-------SNVEEIVINN--TRFLMWDIGG 74 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHH-HTTSC----------EEEECCSS-------SSCEEEEETT--EEEEEEEESS
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHH-hcCCC----------CccCCcCc-------eeeEEEEECC--EEEEEEECCC
Confidence 334456799999999999999999998 33332 22334443 2234455665 7789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHH-----
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYA----- 206 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a----- 206 (432)
++++..++..+++++|++|+|||++++++|+++..|+..+... ..++|+++|+||+|+.+. ...++..+..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~ 152 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSI 152 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGC
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccc
Confidence 9999999999999999999999999999999999999888765 367999999999999643 3344444333
Q ss_pred HhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 207 IKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 207 ~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
+..+++++++||++|.||+++|++|++.
T Consensus 153 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 KDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 2245689999999999999999999754
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=2.1e-26 Score=210.75 Aligned_cols=158 Identities=15% Similarity=0.211 Sum_probs=117.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| ..+.+. .+.+++ .+....+..++ +.+.+|||+|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l-~~~~~~----------~~~~t~-------~~~~~~~~~~~--~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKL-KLGEIV----------TTIPTI-------GFNVETVEYKN--ICFTVWDVGGQDKI 86 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHH-CSSCCE----------EEEEET-------TEEEEEEEETT--EEEEEEECC-----
T ss_pred CCccEEEEECCCCCCHHHHHHHH-HhCCcc----------ccCCcC-------ceeEEEEEECC--EEEEEEECCCCHhH
Confidence 34589999999999999999997 333332 123344 44445555554 77899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHH-----HHhcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMY-----AIKNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~-----a~~~~ 210 (432)
..++..+++++|++|+|||++++++|+.+..|+..+.... +++|++||+||+|+.+.. ..++..+. ++..+
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~ 164 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRT 164 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCc
Confidence 9999999999999999999999999999999999887543 579999999999996532 22322221 11234
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++++||++|.||+++|++|++.+.+
T Consensus 165 ~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 165 WYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred eEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 579999999999999999999988743
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.93 E-value=4.1e-26 Score=207.02 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=123.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| ..+.+. .+.+++ .+....+.+++ +.+.+|||+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l-~~~~~~----------~~~~t~-------~~~~~~~~~~~--~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRL-HLGDVV----------TTVPTV-------GVNLETLQYKN--ISFEVWDLGGQTGV 79 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHT-CCSCCE----------EECSST-------TCCEEEEEETT--EEEEEEEECCSSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHH-HcCCCC----------CcCCCC-------ceEEEEEEECC--EEEEEEECCCCHhH
Confidence 34689999999999999999997 333322 122343 33344555654 67899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHH-----HHHhcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEM-----YAIKNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~-----~a~~~~ 210 (432)
..++..+++++|++|+|||++++++|+++..|+..+.... +++|+++|+||+|+.+.. ..++... .++..+
T Consensus 80 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 157 (189)
T 2x77_A 80 RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRT 157 (189)
T ss_dssp CCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCc
Confidence 9999999999999999999999999999999988886643 579999999999996542 2222222 122335
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.||+++|++|.+.+.++
T Consensus 158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 158 WTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999988653
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.93 E-value=1e-26 Score=211.52 Aligned_cols=160 Identities=20% Similarity=0.335 Sum_probs=121.8
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+|+|++|||||||+++| .++.+. ..+.+++| .....+..+ .+.+.+|||+|+++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~t~~-------~~~~~~~~~--~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVI-ASGQFN---------EDMIPTVG-------FNMRKITKG--NVTIKLWDIGGQPR 79 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHH-HHSCCC---------CSCCCCCS-------EEEEEEEET--TEEEEEEEECCSHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHH-HcCCCC---------CccCCCCc-------eeEEEEEeC--CEEEEEEECCCCHh
Confidence 345799999999999999999998 333332 22334443 222233333 47789999999999
Q ss_pred cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHH-----Hhc
Q psy3450 137 FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKN 209 (432)
Q Consensus 137 ~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~ 209 (432)
+..++..+++++|++|+|||++++++|+.+..|+..+... ..++|++||+||+|+... ...++..+.. ...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~ 157 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDR 157 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSS
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccC
Confidence 9999999999999999999999999999999999888764 267999999999999653 2223322211 123
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 210 QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 210 ~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++++||++|.||+++|++|++.+.+
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999987744
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=5.7e-26 Score=205.73 Aligned_cols=158 Identities=21% Similarity=0.326 Sum_probs=122.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+++| .+..+ ..+.+++| +....+.+++ +.+.+|||+|++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l-~~~~~----------~~~~~t~g-------~~~~~~~~~~--~~l~i~Dt~G~~~~ 73 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQL-ASEDI----------SHITPTQG-------FNIKSVQSQG--FKLNVWDIGGQRKI 73 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHH-CCSCC----------EEEEEETT-------EEEEEEEETT--EEEEEEECSSCGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHH-hcCCC----------CcccCcCC-------eEEEEEEECC--EEEEEEECCCCHHH
Confidence 45689999999999999999998 22221 12334443 4445566664 67899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHH-----HhcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~~ 210 (432)
..++..+++++|++|+|||++++++|+++..|+..+... ..++|+++|+||+|+.+.+. .++..+.. ...+
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 151 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRV 151 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCc
Confidence 999999999999999999999999999999998887543 25799999999999975432 23332221 1234
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++++||++|.||+++|++|++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 152 WQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred eEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999987744
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=3.8e-25 Score=202.42 Aligned_cols=165 Identities=41% Similarity=0.714 Sum_probs=142.1
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
+.+..+||+++|++|||||||++++ .+..++ ..+.+++| .++....+.+++..+.+++||++|++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l-~~~~~~---------~~~~~t~~-----~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRF-TRNEFN---------LESKSTIG-----VEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHH-HHSCCC---------CSCCCCCS-----EEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHH-hcCCCC---------CCCCCccc-----eEEEEEEEEECCEEEEEEEEECCCCc
Confidence 4567899999999999999999997 333332 22334444 46777888899999999999999999
Q ss_pred ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCCcEE
Q psy3450 136 RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFF 214 (432)
Q Consensus 136 ~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~~~~ 214 (432)
++..++..+++.++++++|||+++..+|+++..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++.+.++.++
T Consensus 90 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp SSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred chhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999998887654 5689999999999987777888899999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 215 evSAktg~nI~elf~~L~~~i 235 (432)
++||+++.|++++|+.|.+.+
T Consensus 170 d~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 170 ETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998876
No 100
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=5.4e-26 Score=224.49 Aligned_cols=206 Identities=18% Similarity=0.167 Sum_probs=158.3
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
..+.-.|+++|.+|||||||+|+| .+..+.... +..+ +|.+........+ ...++.||||||+.+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l-~g~~~~i~s----------~~~~---tT~~~~~~~~~~~-~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNL-LGTKVSIIS----------PKAG---TTRMRVLGVKNIP-NEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHH-HTSCCSCCC----------SSSC---CCCSCEEEEEEET-TTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHH-hCCCccccC----------CCCC---ceeeEEEEEEecC-CCCeEEEEECcCCCc
Confidence 345679999999999999999997 444432211 1111 1123333333333 146789999999966
Q ss_pred cc----------hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 137 FC----------TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 137 ~~----------~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
+. .....+++++|++|+|+|+++..++++...|+..+... ++|+++|+||+|+...+....+....+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~ 149 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIH 149 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHH
Confidence 54 45567889999999999999999999988888887763 5899999999999755666677778888
Q ss_pred HhcC--CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCc
Q psy3450 207 IKNQ--MAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGK 284 (432)
Q Consensus 207 ~~~~--~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk 284 (432)
+.++ .+++++||++|.|++++|+.|.+.+ +...+.++.+..++...+++
T Consensus 150 ~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l--------------~~~~~~~~~~~~td~~~~~~--------------- 200 (308)
T 3iev_A 150 KKHPELTEIVPISALKGANLDELVKTILKYL--------------PEGEPLFPEDMITDLPLRLL--------------- 200 (308)
T ss_dssp HHCTTCCCEEECBTTTTBSHHHHHHHHHHHS--------------CBCCCSSCTTCCBCCCHHHH---------------
T ss_pred HhccCCCeEEEEeCCCCCCHHHHHHHHHHhC--------------ccCCCCCCcccccCCCHHHH---------------
Confidence 8875 6899999999999999999999887 23344566667777777776
Q ss_pred eeEEEEEEeeccccCCccccccccccccchhhh
Q psy3450 285 HLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 285 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
.+|++|+++...+++|+||+.+|+
T Consensus 201 ---------~~e~irek~~~~~~~eiP~~~~v~ 224 (308)
T 3iev_A 201 ---------AAEIVREKAMMLTREEVPTSIAVK 224 (308)
T ss_dssp ---------HHHHHHHHHHHTCCTTHHHHCEEE
T ss_pred ---------HHHHHHHHHHhhhhhhcCCeeEEE
Confidence 678999999999999999999984
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.9e-25 Score=199.64 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=121.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||++++ .++.+ ..+.+++| +....+.+++ +.+.+|||+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l-~~~~~----------~~~~~t~~-------~~~~~~~~~~--~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRL-QIGEV----------VTTKPTIG-------FNVETLSYKN--LKLNVWDLGGQTSI 75 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHT-CCSEE----------EEECSSTT-------CCEEEEEETT--EEEEEEEEC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHH-hcCCc----------CccCCcCc-------cceEEEEECC--EEEEEEECCCCHhH
Confidence 45689999999999999999997 32222 12334443 3345556665 77899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHh-----cC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-----NQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-----~~ 210 (432)
..++..+++++|++|+|||++++++|+++..|+..+... ..++|+++|+||+|+.+. ...++..+.... .+
T Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~ 153 (183)
T 1moz_A 76 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRS 153 (183)
T ss_dssp CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCc
Confidence 999999999999999999999999999999999988765 367999999999999643 334444433321 23
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.||+++|++|.+.+.++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999988654
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.5e-26 Score=218.26 Aligned_cols=175 Identities=17% Similarity=0.221 Sum_probs=124.3
Q ss_pred cccccccceEEEEEeCcc---------cchhHHHHHhhhcC---CCCcccccCCCCcCccccCCCcccccccee------
Q psy3450 52 ATQKQYDYLLKFLLVGDS---------DVGKQEILSGLYLE---SRFPRFWLDGSSESPFCSGSGKYDDMLAYK------ 113 (432)
Q Consensus 52 ~~~~~~~~~iKVvvvG~~---------gvGKSSLln~L~~~---~~~~~~~~~~~~~~~~~~~ig~~~~tid~~------ 113 (432)
+.....+..+||+|+|++ |||||||+++| .+ ..+...+.... .+......++.+.
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l-~~~~~~~~~~~~~~t~------~~~~~~~~~i~~~~~~~~~ 83 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRF-VRPSADEFHLDHTSVL------STSDFGGRVVNNDHFLYWG 83 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHH-HCCSTTTCCSCCCCEE------CHHHHTSTTTTTCSEEEEE
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHH-HhccCCccccccCCcc------cccccceeEeecccccccc
Confidence 344456778999999999 99999999997 44 23321111100 0000000111110
Q ss_pred -EEEEEECCeEEEEEEEe-----------------------CCCCcccchhhhhccc---------------------Cc
Q psy3450 114 -TTTILLDGKRVKLQLWD-----------------------TSGQGRFCTIIRSYSR---------------------GA 148 (432)
Q Consensus 114 -~~~i~i~~~~v~l~i~D-----------------------t~G~e~~~~l~~~~~~---------------------~a 148 (432)
.....+++..+.++||| ++|+++|..++..+++ ++
T Consensus 84 ~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (255)
T 3c5h_A 84 EVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163 (255)
T ss_dssp EEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEEC
T ss_pred cccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccC
Confidence 01122567789999999 7888888888888888 79
Q ss_pred eEEEEEEeCCCC--CChhhHHHHHHHHHhh--CCCCcEEEEEECccCCCCcccCHHHHHHHHHh-cCCcEEEEcCCCCCC
Q psy3450 149 QGILLVYDITNK--WSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFN 223 (432)
Q Consensus 149 d~iIlV~Dvt~~--~Sf~~l~~~l~~i~~~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~-~~~~~~evSAktg~n 223 (432)
|++|+|||++++ ++|+.+..|+.++... .+++|++||+||+|+.+++.+ ++++++++. .+++|+++||++|.|
T Consensus 164 d~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp CEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred CEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 999999999998 9999999999998765 267999999999999765555 577788876 488999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3450 224 IRESFTELSRRA 235 (432)
Q Consensus 224 I~elf~~L~~~i 235 (432)
|+++|++|++.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 103
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.3e-24 Score=222.61 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=158.1
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC--
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~-- 134 (432)
.+..+||+++|++|||||||+|+|........ ....| +|.+.....+..++.. +.||||||+
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-----------~~~~g---tT~d~~~~~~~~~~~~--~~l~DT~G~~~ 235 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-----------SNVAG---TTRDAVDTSFTYNQQE--FVIVDTAGMRK 235 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------C------------CCEEEEETTEE--EEETTHHHHTC
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCceee-----------cCCCC---ceeeeeEEEEEECCeE--EEEEECCCcCc
Confidence 34578999999999999999999833222110 01111 2345555667777754 799999997
Q ss_pred --------cccchhhh-hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHH
Q psy3450 135 --------GRFCTIIR-SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMY 205 (432)
Q Consensus 135 --------e~~~~l~~-~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~ 205 (432)
|.|..+.. .+++.+|++|+|+|+++..++++. +|+..+.. .+.|+++|+||+|+.+++.+..++..+.
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 312 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEEN 312 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHH
Confidence 45544443 478899999999999999998875 57777665 4589999999999987666554444332
Q ss_pred -HHh----cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhccccccccc
Q psy3450 206 -AIK----NQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRS 280 (432)
Q Consensus 206 -a~~----~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~ 280 (432)
.+. .+++++++||++|.||+++|+.+.+.+........ +....+++...........
T Consensus 313 ~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~------------------t~~ln~~l~~~~~~~~pp~ 374 (436)
T 2hjg_A 313 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ------------------TNVLNDVIMDAVAMNPTPT 374 (436)
T ss_dssp HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC------------------HHHHHHHHHHHHHHSCCCE
T ss_pred HHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCC------------------HHHHHHHHHHHHHhCCCCc
Confidence 232 36799999999999999999999998865432111 2223344444433344445
Q ss_pred CCCceeEEEEEEeeccccCCccccccccccccchhhh
Q psy3450 281 NKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 281 ~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
.+||.+++||..|. +.-+|.+.++.|++..++++=.
T Consensus 375 ~~~~~~~i~y~~q~-~~~pp~~~~~~n~~~~~~~~y~ 410 (436)
T 2hjg_A 375 HNGSRLKIYYATQV-SVKPPSFVVFVNDPELMHFSYE 410 (436)
T ss_dssp ETTEECCEEEEEEE-ETTTTEEEEEESCGGGCCHHHH
T ss_pred cCCcceeEEeEecC-CCCCCEEEEEeCCcccCCHHHH
Confidence 68999999999999 6689999999999988888753
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=2.1e-24 Score=192.26 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=115.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc-
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC- 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~- 138 (432)
.+||+++|++|||||||+++| .+..+.. ...++. +++.....+.+++ ..+.+|||+|++++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l-~~~~~~~---------~~~~~~-----t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNAL-TGENVYI---------GNWPGV-----TVEKKEGEFEYNG--EKFKVVDLPGVYSLTA 65 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HCCSSSC---------C----------CCCCCEEEEEETT--EEEEEEECCCCSCSSS
T ss_pred ccEEEEECCCCCCHHHHHHHH-hCCCeec---------cCCCCc-----ceeeeEEEEEECC--cEEEEEECCCcccCCC
Confidence 479999999999999999997 3333211 111111 2355555666666 568999999998875
Q ss_pred -----hhhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 139 -----TIIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 139 -----~l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
.+...|++ ++|++++|+|+++. +....|+.++.+. ++|+++|+||+|+...+.+.. +++.+++.+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~ 139 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI-DVDKLEKILGV 139 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhc--CCCEEEEEEchHhccccChhh-HHHHHHHHhCC
Confidence 34456665 89999999999874 4556688877653 689999999999965455543 46778888899
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i 235 (432)
+++++||++|.||+++|++|.+.+
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998865
No 105
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=9.3e-24 Score=219.22 Aligned_cols=224 Identities=17% Similarity=0.175 Sum_probs=162.1
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC--
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG-- 133 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G-- 133 (432)
..+..+||+++|++|||||||+|+|...+.+.. ....| ++.+.....+..++. .+.||||||
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-----------~~~~g---tt~~~~~~~~~~~~~--~~~l~DT~G~~ 254 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-----------SNVAG---TTRDAVDTSFTYNQQ--EFVIVDTAGMR 254 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------CC---------CTTSEEEEETTE--EEEETTGGGTT
T ss_pred cccccceeEEecCCCCCHHHHHHHHhCCCcccc-----------CCCCC---eEEEEEEEEEEECCc--eEEEEECCCCC
Confidence 345678999999999999999999833222211 01111 223555556667775 679999999
Q ss_pred --------Ccccchhhhh-cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH
Q psy3450 134 --------QGRFCTIIRS-YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM 204 (432)
Q Consensus 134 --------~e~~~~l~~~-~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~ 204 (432)
+++|..+... +++.+|++|+|+|+++..+.. ...|+..+.+ .++|++||+||+|+.+++++..+++.+
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~ 331 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEE 331 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHH
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHH
Confidence 6777766554 789999999999998865433 2456666655 458999999999998877777788777
Q ss_pred HHHhc-----CCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccc
Q psy3450 205 YAIKN-----QMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWR 279 (432)
Q Consensus 205 ~a~~~-----~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~ 279 (432)
.+++. +++++++||++|.||+++|+.+.+.+.+...... +....+++..........
T Consensus 332 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~------------------t~~ln~~l~~~~~~~~pp 393 (456)
T 4dcu_A 332 NIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQ------------------TNVLNDVIMDAVAMNPTP 393 (456)
T ss_dssp HHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCC------------------HHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCC------------------HHHHHHHHHHHHHhCCCC
Confidence 77654 5799999999999999999999998866543221 122233333333333334
Q ss_pred cCCCceeEEEEEEeeccccCCccccccccccccchhhh
Q psy3450 280 SNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 280 ~~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
..+||..++||..|. ..-||.+.++.|++..++++-.
T Consensus 394 ~~~~~~~ki~y~~q~-~~~pp~~~~~~n~~~~~~~~y~ 430 (456)
T 4dcu_A 394 THNGSRLKIYYATQV-SVKPPSFVVFVNDPELMHFSYE 430 (456)
T ss_dssp EETTEECCEEEEEEE-ETTTTEEEEEESCGGGSCHHHH
T ss_pred CCCCceeeEEEEecC-CCCCCEEEEEecCcccCCHHHH
Confidence 468999999999998 7889999999999988887653
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=3.4e-25 Score=219.46 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=119.0
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch--
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT-- 139 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~-- 139 (432)
||+++|+.|||||||+++++ .+.++.. .....+++| +++. . ++ ..++++||||+||++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~-~~~~~~~------~~~~~~Tig-----~~~~--~--v~-~~v~LqIWDTAGQErf~~~~ 63 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVF-HNMQPLD------TLYLESTSN-----PSLE--H--FS-TLIDLAVMELPGQLNYFEPS 63 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHH-SCCCSGG------GTTCCCCCS-----CCCE--E--EC-SSSCEEEEECCSCSSSCCCS
T ss_pred CEEEECCCCCCHHHHHHHHH-cCCCCCc------cceecCeee-----eeeE--E--Ec-cEEEEEEEECCCchhccchh
Confidence 78999999999999999863 3322211 112334554 2333 2 23 358899999999999964
Q ss_pred -hhhhcccCceEEEEEEeCCCCCChhhHH---HHHHHHHhhCCCCcEEEEEECccCCCC-------cccCHHHHHHHHHh
Q psy3450 140 -IIRSYSRGAQGILLVYDITNKWSFDGID---RWLKEVEEHAPGVPKVLVGNRLHLAFN-------RTVTTREAEMYAIK 208 (432)
Q Consensus 140 -l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~---~~l~~i~~~~~~iPiILVgNK~DL~~~-------r~v~~ee~~~~a~~ 208 (432)
++..|+++++++|+|||++++ .++.+. +|+.++.+..+++|++|||||+||..+ |++..++++++++.
T Consensus 64 l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 64 YDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 468899999999999999998 333333 345555556688999999999999764 56788888888886
Q ss_pred ----cCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 209 ----NQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 209 ----~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++.|+|+||++ .||.++|..+++.+..
T Consensus 143 ~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred cccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 678999999998 5999999999987753
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=8.2e-25 Score=202.53 Aligned_cols=159 Identities=15% Similarity=0.216 Sum_probs=108.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe-EEEEEEEeCCCCcc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK-RVKLQLWDTSGQGR 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~-~v~l~i~Dt~G~e~ 136 (432)
...+||+++|++|||||||+++| .++.+... +.+.. .++. .+.+++. .+.+++|||+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l-~~~~~~~~---------~~~~~------~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRL-LTGQYRDT---------QTSIT------DSSA--IYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHH-HHSCCCCB---------CCCCS------CEEE--EEECSSTTCCEEEEEECCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCCcccc---------cCCcc------eeeE--EEEecCCCccEEEEEECCCChh
Confidence 34689999999999999999998 33333321 11111 1222 2556654 58899999999999
Q ss_pred cch-hhhhcccCceEEEEEEeCCCCC-ChhhHHH-HHHHHHhh---CCCCcEEEEEECccCCCCcccC--HHHHHH----
Q psy3450 137 FCT-IIRSYSRGAQGILLVYDITNKW-SFDGIDR-WLKEVEEH---APGVPKVLVGNRLHLAFNRTVT--TREAEM---- 204 (432)
Q Consensus 137 ~~~-l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~-~l~~i~~~---~~~iPiILVgNK~DL~~~r~v~--~ee~~~---- 204 (432)
+.. ++..|++++|++|+|||+++.. ++..+.. |...+... .+++|++||+||+|+...+... .+...+
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHH
Confidence 987 8889999999999999999853 4555544 44444431 3578999999999997543211 111111
Q ss_pred ----------------------------HHH-hc--CCcEEEEcCCCC------CCHHHHHHHHHHH
Q psy3450 205 ----------------------------YAI-KN--QMAFFEVSPLCD------FNIRESFTELSRR 234 (432)
Q Consensus 205 ----------------------------~a~-~~--~~~~~evSAktg------~nI~elf~~L~~~ 234 (432)
++. .+ +++|+||||++| .||+++|++|.+.
T Consensus 147 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 147 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 11 568999999999 9999999999875
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=4.4e-23 Score=193.65 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=118.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC---
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ--- 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~--- 134 (432)
...+||+|+|++|||||||+++| .+..+... ... .++.+.....+..++ +.+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l-~~~~~~~~-----------~~~---~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIV-SRANVDVQ-----------SYS---FTTKNLYVGHFDHKL--NKYQIIDTPGLLDR 89 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHH-TTTCEEEE-----------CC--------CEEEEEEEETT--EEEEEEECTTTTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCCCccC-----------CCC---CcceeeeeeeeecCC--CeEEEEECCCCcCc
Confidence 45689999999999999999997 33333211 000 011233333444444 67899999999
Q ss_pred ---cc----cchhhhhcccCceEEEEEEeCCCCCChhh--HHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHH---HH
Q psy3450 135 ---GR----FCTIIRSYSRGAQGILLVYDITNKWSFDG--IDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTR---EA 202 (432)
Q Consensus 135 ---e~----~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~--l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~e---e~ 202 (432)
+. +.. +..++..+|++|+|||++++.+|+. ...|+..+....+++|+++|+||+|+.+.+++..+ .+
T Consensus 90 ~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 168 (228)
T 2qu8_A 90 AFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLI 168 (228)
T ss_dssp CGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHH
T ss_pred ccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHH
Confidence 33 222 2345788999999999999988863 24677777765567999999999999877777654 45
Q ss_pred HHHHHhcC--CcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 203 EMYAIKNQ--MAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 203 ~~~a~~~~--~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
..+++..+ ++++++||++|.||+++|++|++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 169 KQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 66777777 89999999999999999999999986644
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=212.32 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=116.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+|+|++|||||||+++| .+..+.. . .+++ ......+..++ +.++||||+|++.|.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l-~~~~~~~---------~-~pT~-------~~~~~~~~~~~--~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKL-KLGEIVT---------T-IPTI-------GFNVETVEYKN--ISFTVWDVGGQDKIR 223 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHT-CSSCCEE---------E-EEET-------TEEEEEEEETT--EEEEEEECC-----C
T ss_pred CcceEEEECCCCccHHHHHHHH-hCCCCCC---------c-cccc-------ceEEEEEecCc--EEEEEEECCCCHhHH
Confidence 4579999999999999999997 3333321 1 1233 33344444444 778999999999999
Q ss_pred hhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHH-----HhcCC
Q psy3450 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYA-----IKNQM 211 (432)
Q Consensus 139 ~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a-----~~~~~ 211 (432)
.++..+++.+|++|+|||++++.+|+.+..|+..+.... +++|++||+||+|+.+.. ..++..... +..++
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNW 301 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCE
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCC
Confidence 999999999999999999999999999988887776543 579999999999996543 223322222 12345
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++||++|.||+++|++|++.+.+
T Consensus 302 ~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 302 YIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 79999999999999999999998854
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=9.7e-24 Score=208.16 Aligned_cols=160 Identities=17% Similarity=0.266 Sum_probs=126.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCC-CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLES-RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~-~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
..+||+++|++|||||||+++|+.+. .+. ...+.++ ++.....+.+++ .+.+.+|||+|++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~--------~~~~~~T-------i~~~~~~~~~~~-~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD--------TRRLGAT-------IDVEHSHLRFLG-NMTLNLWDCGGQDVF 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG--------GGGCCCC-------CSEEEEEEEETT-TEEEEEEEECCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--------ccCcCCc-------cceEEEEEEeCC-ceEEEEEECCCcHHH
Confidence 35899999999999999999973321 111 0112223 344444555555 688999999999988
Q ss_pred -----chhhhhcccCceEEEEEEeCCCCCChhhHHHHHH---HHHhhCCCCcEEEEEECccCCC--Ccc----cCHHHHH
Q psy3450 138 -----CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK---EVEEHAPGVPKVLVGNRLHLAF--NRT----VTTREAE 203 (432)
Q Consensus 138 -----~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~---~i~~~~~~iPiILVgNK~DL~~--~r~----v~~ee~~ 203 (432)
..++..+++++|++|+|||++++++|+++..|.. ++....+++|++|||||+|+.+ +++ +..+++.
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~ 145 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLS 145 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHH
Confidence 7788889999999999999999999999977654 4455567899999999999976 455 6678889
Q ss_pred HHHHhcC---CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 204 MYAIKNQ---MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 204 ~~a~~~~---~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++++.++ ++++++||++ .++.++|..+++.+
T Consensus 146 ~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 146 ETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 9999987 7999999999 89999999988765
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=2.1e-24 Score=212.55 Aligned_cols=198 Identities=15% Similarity=0.087 Sum_probs=135.7
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc---
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR--- 136 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~--- 136 (432)
..+|+++|++|||||||+|+| .+..+.... ...+ +|.+.....+..+ ..++.||||||+.+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l-~g~~~~ivs----------~~~~---tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNL-LGVKVAPIS----------PRPQ---TTRKRLRGILTEG--RRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HTSCCSCCC----------SSSC---CCCSCEEEEEEET--TEEEEEEECCCCCCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHH-hCCceeeec----------CCCC---ceeEEEEEEEEeC--CcEEEEecCccccchhh
Confidence 458999999999999999997 444332111 0111 1112222222233 46789999999876
Q ss_pred -----cchhhhhcccCceEEEEEEeCCCCCChhhHHHHH-HHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc-
Q psy3450 137 -----FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL-KEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN- 209 (432)
Q Consensus 137 -----~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l-~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~- 209 (432)
+......+++++|++|+|||+++..+.. ..|+ +.+....++.|+++|+||+|+...+.. ..+.++.+
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE----AMKAYHELL 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----HHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH----HHHHHHHhc
Confidence 3445567889999999999999876544 4554 455555457899999999999654330 22233332
Q ss_pred C-CcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCc-hhHHHHHHHhcccccccccCCCceeE
Q psy3450 210 Q-MAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESF-TELSRRALQRNGMERLWRSNKGKHLL 287 (432)
Q Consensus 210 ~-~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~r~l~~~~l~r~~~~~~Gk~~~ 287 (432)
+ .+++++||++|.|++++|+.|.+.+.+ ..+.++.+.+ ++...+++
T Consensus 145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l~~--------------~~~~y~~~~~~td~~~~~~------------------ 192 (301)
T 1wf3_A 145 PEAEPRMLSALDERQVAELKADLLALMPE--------------GPFFYPEDYAKSDQTFGEW------------------ 192 (301)
T ss_dssp TTSEEEECCTTCHHHHHHHHHHHHTTCCB--------------CCCSSCTTCCSBSSCHHHH------------------
T ss_pred CcCcEEEEeCCCCCCHHHHHHHHHHhccc--------------CCCCCCcccccCCCCHHHH------------------
Confidence 3 479999999999999999999876522 2223333444 45555554
Q ss_pred EEEEEeeccccCCccccccccccccchhhh
Q psy3450 288 TYFQYCFAGLVRPSVDVNKNKYNLLSFSVI 317 (432)
Q Consensus 288 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
.++++|+++...+.+++||++.|.
T Consensus 193 ------~~e~~Re~~~~~l~~eiP~~~~v~ 216 (301)
T 1wf3_A 193 ------VAEILREEAMKRLWHEVPYAVATK 216 (301)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHCEEE
T ss_pred ------HHHHHHHHHHHHhhcccCceEEEE
Confidence 467889999999999999999884
No 112
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=9.4e-23 Score=182.08 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=112.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .+..+.. ...++.+ .++....+.+++. .+.+|||+|++++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l-~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~--~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAI-RHSKVTE---------QEAGGIT-----QHIGAYQVTVNDK--KITFLDTPGHEAF 68 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHH-HTTCSSC---------SSCCSSS-----TTCCCCEEEETTE--EEEESCCCSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCcccc---------CCCCcee-----EeeeEEEEEeCCc--eEEEEECCCCHHH
Confidence 34679999999999999999997 3333322 1112221 2444455667774 4689999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc-------C
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-------Q 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~-------~ 210 (432)
..++..+++.+|++|+|||+++....+.. .++..+.. .++|+++|+||+|+.+. ..++.....+.. +
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~--~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 69 TTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA--ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWG 142 (178)
T ss_dssp SCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG--GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTT
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh--CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcC
Confidence 99999999999999999999886443322 22233222 46899999999999653 223333333222 2
Q ss_pred --CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 --MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 --~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.||+++|++|++.+...
T Consensus 143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 143 GDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 5899999999999999999999988654
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.89 E-value=1e-23 Score=190.28 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=116.5
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC-------
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG------- 133 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G------- 133 (432)
+||+++|++|||||||+++| .+..+.. .+.++. ......+.++ .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l-~~~~~~~---------~~~~~~-------t~~~~~~~~~----~~~l~Dt~G~~~~~~~ 60 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRL-TGKKVRR---------GKRPGV-------TRKIIEIEWK----NHKIIDMPGFGFMMGL 60 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHH-HSCCCSS---------SSSTTC-------TTSCEEEEET----TEEEEECCCBSCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHH-hCcCCcc---------CCCCCc-------cceeEEEecC----CEEEEECCCccccccC
Confidence 69999999999999999997 3333322 122222 1222233333 579999999
Q ss_pred ----CcccchhhhhcccC-ceEEEEEEeCCCCCChhhH-HHHHHH--------HHh-h-CCCCcEEEEEECccCCCCccc
Q psy3450 134 ----QGRFCTIIRSYSRG-AQGILLVYDITNKWSFDGI-DRWLKE--------VEE-H-APGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 134 ----~e~~~~l~~~~~~~-ad~iIlV~Dvt~~~Sf~~l-~~~l~~--------i~~-~-~~~iPiILVgNK~DL~~~r~v 197 (432)
++.+..++..++++ ++++++|||+.|..+|+++ ..|... +.. . ..++|+++|+||+|+...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 61 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-- 138 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--
Confidence 67777788888887 8988888888889999887 677653 211 1 1579999999999997644
Q ss_pred CHHHHHHHHHhcCCc-------EEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 198 TTREAEMYAIKNQMA-------FFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~-------~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.++++++++.++++ ++++||++|.||+++|++|++.+.+..
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 139 -QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp -HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 56778888888864 799999999999999999999886643
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=3.8e-23 Score=186.73 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=120.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+++| .+..+.. ...++. +++.....+.+++ ..+.+|||+|++.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l-~~~~~~~---------~~~~~~-----t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNAL-TGENVYI---------GNWPGV-----TVEKKEGEFEYNG--EKFKVVDLPGVYSLT 68 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH-HTTCEEE---------EECTTS-----CCEEEEEEEEETT--EEEEEEECCCCSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHH-hCCCccc---------cCCCCe-----eccceEEEEEeCC--cEEEEEECCCcCccc
Confidence 3589999999999999999998 3322211 111222 2355566666666 678999999998875
Q ss_pred ------hhhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 ------TIIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ------~l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
.++..+++ .+|++++|+|.++ ++....|+.++.. .+.|+++|+||+|+...+.+. ++++++++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~ 142 (188)
T 2wjg_A 69 ANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIE-IDVDKLEKILG 142 (188)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred cccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccch-HHHHHHHHHhC
Confidence 34566664 5999999999875 6777888888776 468999999999996544444 45678888889
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++||++|.|++++|+++++.+.+.
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 VKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988543
No 115
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=2e-23 Score=218.55 Aligned_cols=161 Identities=18% Similarity=0.251 Sum_probs=122.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+|+|++|||||||+++|. ++.+.. +.+++ +.....+..++ +.+.||||+|++.|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~-~~~~~~----------~~~T~-------~~~~~~~~~~~--~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLK-LGQSVT----------TIPTV-------GFNVETVTYKN--VKFNVWDVGGQDKI 379 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH-HSSCCC----------CCCCS-------SEEEEEEESSS--CEEEEEEECCCGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHh-cCCCCC----------cCCcc-------ceeEEEEEeCC--EEEEEEECCCcHHH
Confidence 456999999999999999999983 332321 12233 44444444444 67899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC--CCCcEEEEEECccCCCCcccCHHHHHHHHH-----hcC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAI-----KNQ 210 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~--~~iPiILVgNK~DL~~~r~v~~ee~~~~a~-----~~~ 210 (432)
..++..+++++|++|+|||++++++|+++..|+.++.... .++|+|||+||+|+.+. ...++...... ..+
T Consensus 380 ~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 457 (497)
T 3lvq_E 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRN 457 (497)
T ss_dssp SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSC
T ss_pred HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCC
Confidence 9999999999999999999999999999999998886543 57999999999999643 23333322211 123
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhhhcC
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQRNG 240 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~~~~ 240 (432)
++++++||++|.||+++|++|.+.+.+..+
T Consensus 458 ~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 458 WYVQPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 469999999999999999999998755443
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=9.8e-23 Score=185.11 Aligned_cols=157 Identities=15% Similarity=0.250 Sum_probs=107.9
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC----
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG---- 133 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G---- 133 (432)
+..+||+++|++|||||||+++| .+..+. ..+.++.|. +.+ .....+++ .+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l-~~~~~~---------~~~~~~~~~---t~~--~~~~~~~~---~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSL-INRKNL---------ARTSSKPGK---TQT--LNFYIIND---ELHFVDVPGYGFA 82 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHH-HTC-------------------------CC--EEEEEETT---TEEEEECCCBCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCCCc---------cccCCCCCc---eee--EEEEEECC---cEEEEECCCCCcc
Confidence 45789999999999999999998 333221 112222221 111 12223344 479999999
Q ss_pred ------CcccchhhhhcccCc---eEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH--HHH
Q psy3450 134 ------QGRFCTIIRSYSRGA---QGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT--REA 202 (432)
Q Consensus 134 ------~e~~~~l~~~~~~~a---d~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~--ee~ 202 (432)
++.+..++..+++.+ |++++|+|+++..++.+.. ++..+.. .++|+++|+||+|+...+++.. +++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 159 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVV 159 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHH
Confidence 777777788888776 9999999999988887643 2222332 4689999999999976554432 233
Q ss_pred HH-HHHhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 203 EM-YAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 203 ~~-~a~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+ ++...+++++++||++|.||+++|++|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 160 RQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 32 3323467999999999999999999999876
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=6.2e-23 Score=184.54 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=112.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+++| .+..+.. . .... .++.++....+.+++. .+.+|||+|++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l-~~~~~~~-------~---~~~~---~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNAL-AGREAAI-------V---TDIA---GTTRDVLREHIHIDGM--PLHIIDTAGLREASD 67 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHH-HTSCCSC-------C---CSST---TCCCSCEEEEEEETTE--EEEEEECCCCSCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHH-hCCCcce-------e---eCCC---CceeceeeEEEEECCe--EEEEEECCCcccchh
Confidence 479999999999999999998 3222210 0 0011 1234677777888875 478999999976422
Q ss_pred h--------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 140 I--------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 140 l--------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
. ...+++++|++|+|||++++.+++. ..|+..+.+.. .++|+++|+||+|+.++.. .+++..+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~ 139 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNG 139 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccC
Confidence 1 1136799999999999999999874 57888877655 4799999999999854211 1122346
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.+++++||++|.||+++|++|.+.+.
T Consensus 140 ~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 140 HALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999988763
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=1.5e-22 Score=177.54 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc----
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR---- 136 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~---- 136 (432)
.||+++|++|||||||+++|. +..+... . ..++ .+.+.....+..++. .+.+|||+|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~-~~~~~~~-------~-~~~~-----~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL-KKRSAVV-------A-DVPG-----VTRDLKEGVVETDRG--RFLLVDTGGLWSGDKW 65 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HCCC------------------------CCEEEEEEETTE--EEEEEECGGGCSSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHh-CCCeeec-------c-CCCC-----ceecceEEEEEeCCc--eEEEEECCCCCCccch
Confidence 689999999999999999983 3222100 0 0011 123555666677775 679999999887
Q ss_pred ---cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-c
Q psy3450 137 ---FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM-A 212 (432)
Q Consensus 137 ---~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~-~ 212 (432)
+...+..+++.+|++|+|||+++..+... .|+..+... .++|+++|+||+|+.+.+ +++.+++ ++++ +
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~ 137 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGD 137 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCS
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccccch----HhHHHHH-hCCCCC
Confidence 34455678899999999999998755432 333332222 358999999999996532 3344555 6677 8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 213 FFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 213 ~~evSAktg~nI~elf~~L~~~i 235 (432)
++++||++|.|++++|++|++.+
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEecccCCChHHHHHHHHHhC
Confidence 99999999999999999998764
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=8.1e-23 Score=216.14 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=125.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEE------EE--EECCeEEEEEE
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT------TI--LLDGKRVKLQL 128 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~------~i--~i~~~~v~l~i 128 (432)
....+||+++|++|||||||+++| .+..+ ...+.+++| +++..+ .+ ..++..+.+.+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l-~~~~~---------~~~~~~t~g-----~~~~~~~~~~~~~v~~~~~~~~~~~~i 102 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQL-IGETF---------DPKESQTHG-----LNVVTKQAPNIKGLENDDELKECLFHF 102 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHH-HC--------------------C-----CCEEEEEGGGSGGGTTCSTTTTCEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHH-hcCCC---------CCCCCCccc-----eEEEEeccccccceeecCCCceEEEEE
Confidence 456799999999999999999998 33333 222334443 122222 11 12344678999
Q ss_pred EeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 129 WDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 129 ~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
|||+|++.+..+...+++++|++|+|||+++ ++.+..|+.++....+++|+|||+||+|+...+.+..+++++++..
T Consensus 103 ~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~ 179 (535)
T 3dpu_A 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPA 179 (535)
T ss_dssp ECCCSCCTTTTTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred EECCcHHHHHHHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence 9999999999999999999999999999875 4677899999999888899999999999988888888889999888
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
.+++++++||++|.||+++|+.|.+.+.+..
T Consensus 180 ~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 180 IENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp GTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred cCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999886643
No 120
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=3.6e-22 Score=196.48 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=137.1
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc-c--
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-R-- 136 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-~-- 136 (432)
..+|+++|++|||||||+|++ .+..+.... ...+ ++.+.....+..++ .++.+|||||.+ .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L-~g~~~~i~s----------~~~~---tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKL-LGQKISITS----------RKAQ---TTRHRIVGIHTEGA--YQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHH-HTCSEEECC----------CCSS---CCSSCEEEEEEETT--EEEEEESSSSCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCccccC----------CCCC---cceeeEEEEEEECC--eeEEEEECcCCCccch
Confidence 358999999999999999997 443332110 0111 11122222233333 578999999997 2
Q ss_pred ------cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 137 ------FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 137 ------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
+......+++.+|++++|+|+++ +.....|+.+.... .+.|+++|+||+|+...+....+.+.++++.++
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcC
Confidence 33344567899999999999977 44444555443322 358999999999986533333455566666677
Q ss_pred C-cEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhcccccccccCCCceeEEE
Q psy3450 211 M-AFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRSNKGKHLLTY 289 (432)
Q Consensus 211 ~-~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~~~Gk~~~~y 289 (432)
+ .++++||++|.|++++++.+.+.+.. ....++.+..++...+++
T Consensus 148 ~~~~i~iSA~~g~~v~~l~~~i~~~l~~--------------~~~~~~~~~~~d~~~~~~-------------------- 193 (301)
T 1ega_A 148 FLDIVPISAETGLNVDTIAAIVRKHLPE--------------ATHHFPEDYITDRSQRFM-------------------- 193 (301)
T ss_dssp CSEEEECCTTTTTTHHHHHHHHHTTCCB--------------CCCSSCTTCCSCCSHHHH--------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHHHhCCc--------------CCCCCCccccCCCCHHHH--------------------
Confidence 6 79999999999999999999876622 223344444555555554
Q ss_pred EEEeeccccCCccccccccccccchhhhh
Q psy3450 290 FQYCFAGLVRPSVDVNKNKYNLLSFSVIS 318 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (432)
.++++|+++...+++|+||+.+|+.
T Consensus 194 ----~~e~~re~l~~~l~~e~p~~~~v~i 218 (301)
T 1ega_A 194 ----ASEIIREKLMRFLGAELPYSVTVEI 218 (301)
T ss_dssp ----HHHHHHHHHHHHHGGGCCTTEEEEE
T ss_pred ----HHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4678899999999999999988854
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=1.4e-21 Score=188.19 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=116.3
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+|+| .+..+.. ...++ .+++.....+..++ ..+.+|||||++.+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l-~g~~~~~---------~~~pg-----~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNAL-TGTKQYV---------ANWPG-----VTVEKKEGVFTYKG--YTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHH-HTTCEEE---------EECTT-----SCCEEEEEEEEETT--EEEEEEECCCCSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHH-HCCCCcc---------cCCCC-----ceEEEEEEEEEECC--eEEEEEECCCcCccC
Confidence 4689999999999999999998 3322211 11122 22355555555544 678999999998776
Q ss_pred h------hhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 T------IIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ~------l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
. +...|+ .++|++|+|+|+++.++ ...|..++.+. ++|+++|+||+|+...+.+.. ++..+++.++
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg 140 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILEM--EKKVILAMTAIDEAKKTGMKI-DRYELQKHLG 140 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHhc--CCCEEEEEECcCCCCccchHH-HHHHHHHHcC
Confidence 5 335565 58999999999998643 34566666654 589999999999965555543 4678888999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
++++++||++|.|++++|+++.+.+.
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999999999998764
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=3.8e-21 Score=173.87 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=109.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC---
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG--- 133 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G--- 133 (432)
....+||+++|++|||||||+++|+.. .+.. ..++.|. .........+. ++.+|||+|
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~----------~~~~~~~-----t~~~~~~~~~~---~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNR-KIAF----------VSKTPGK-----TRSINFYLVNS---KYYFVDLPGYGY 80 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSC----------CCSSCCC-----CCCEEEEEETT---TEEEEECCCBSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcC-cccc----------ccCCCCC-----ccCeEEEEECC---cEEEEECCCCcc
Confidence 345689999999999999999998332 2211 1122221 11111222232 468999999
Q ss_pred -------CcccchhhhhcccCc---eEEEEEEeCCCCCChhhH--HHHHHHHHhhCCCCcEEEEEECccCCCC--cccCH
Q psy3450 134 -------QGRFCTIIRSYSRGA---QGILLVYDITNKWSFDGI--DRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTT 199 (432)
Q Consensus 134 -------~e~~~~l~~~~~~~a---d~iIlV~Dvt~~~Sf~~l--~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~ 199 (432)
++.+..++..+++.+ |++++|+|.++..+.... ..|+.. . ++|+++|+||+|+.++ ++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~p~i~v~nK~Dl~~~~~~~~~~ 155 (195)
T 3pqc_A 81 AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L--NIPFTIVLTKMDKVKMSERAKKL 155 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T--TCCEEEEEECGGGSCGGGHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c--CCCEEEEEEChhcCChHHHHHHH
Confidence 666777777777665 999999999887554432 334433 2 5899999999999643 33444
Q ss_pred HHHHHHHHhcC-CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 200 REAEMYAIKNQ-MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 200 ee~~~~a~~~~-~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++.+++...+ ++++++||++|.||+++|++|.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 156 EEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 56667777644 799999999999999999999988743
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=7.9e-22 Score=191.49 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=113.0
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+|+|.....+... .++. +++. +...++. ...+.+|||||++.+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~----------~pg~-----tv~~--~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGN----------WPGV-----TVER--KSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCS----------SSCC-----CCSC--EEEECTT-CTTEEEEECCCCSCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC----------CCCC-----cEEE--EEEEEec-CCeEEEEECCCcCccC
Confidence 3579999999999999999998332222111 1111 1232 2333444 5678999999998875
Q ss_pred ------hhhhhccc--CceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 ------TIIRSYSR--GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ------~l~~~~~~--~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
.+...|+. ++|++|+|||+++.+ ....|..++.+ .++|+++|+||+|+...+.+. .++..+++.++
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg 137 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLG 137 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcC
Confidence 45566765 699999999998854 34567666665 368999999999986544444 45677888899
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++++++||++|.||+++|+++++.+
T Consensus 138 ~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 124
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=2.3e-20 Score=192.77 Aligned_cols=217 Identities=18% Similarity=0.161 Sum_probs=141.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
+..+||+++|++|||||||+|++....... ..+..| +|.+.....+.+++. .+.+|||+|+.++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~-----------v~~~~g---tT~d~~~~~i~~~g~--~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-----------VSPIPG---TTRDPVDDEVFIDGR--KYVFVDTAGLRRK 241 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE-----------ECCCC---------CCEEEEETTE--EEEESSCSCC---
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc-----------cCCCCC---CcCCceEEEEEECCE--EEEEEECCCCccc
Confidence 356899999999999999999983222111 011111 223455566778886 4689999998543
Q ss_pred chhh------------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH-
Q psy3450 138 CTII------------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM- 204 (432)
Q Consensus 138 ~~l~------------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~- 204 (432)
.... ..+++.+|++++|+|+++..++++. .+...+.. .+.|+++|+||+|+.+++....++..+
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~ 318 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKL 318 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHH
Confidence 3221 2356789999999999988777653 23333333 358999999999997665555554432
Q ss_pred HHHh----cCCcEEEEcCCCCCCHHHHHHHHHHHHhhhcCCcccccccCCCCCCCcCCCCchhHHHHHHHhccccccccc
Q psy3450 205 YAIK----NQMAFFEVSPLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRKPLINFESFTELSRRALQRNGMERLWRS 280 (432)
Q Consensus 205 ~a~~----~~~~~~evSAktg~nI~elf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~l~~~~l~r~~~~ 280 (432)
+.+. .+++++++||++|.||+++|+.+.+.+....... .+...-+++..........
T Consensus 319 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i------------------~t~~ln~~l~~~~~~~~~~- 379 (439)
T 1mky_A 319 FREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV------------------PSSAINSALQKVLAFTNLP- 379 (439)
T ss_dssp HHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC------------------CHHHHHHHHHHHHTTCCCS-
T ss_pred HHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC------------------CHHHHHHHHHHHHHcCCCC-
Confidence 2233 3579999999999999999999998775542211 1222333343333221111
Q ss_pred CCCceeEEEEEEeeccccCCccccccccccccchhh
Q psy3450 281 NKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSV 316 (432)
Q Consensus 281 ~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (432)
|+.++||..+. +.-+|.+-++.|++..++++-
T Consensus 380 ---~~~ki~y~~q~-~~~p~~~~~~~n~~~~~~~~y 411 (439)
T 1mky_A 380 ---RGLKIFFGVQV-DIKPPTFLFFVNSIEKVKNPQ 411 (439)
T ss_dssp ---TTCCEEEEEEE-ETTTTEEEEEESCSTTCCHHH
T ss_pred ---CCcEEEEEEec-CCCCCEEEEEEcCcccCCHHH
Confidence 77899999998 557899999999998887654
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=1.2e-20 Score=175.42 Aligned_cols=162 Identities=13% Similarity=0.118 Sum_probs=107.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEEC-CeEEEEEEEeCCCC--
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD-GKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~-~~~v~l~i~Dt~G~-- 134 (432)
...+||+|+|++|||||||+|+|.....+.. .....| ++.+.. ...+. .....+.||||||.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~----------~~~~~~---~t~~~~--~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAF----------ASKTPG---RTQHIN--YFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSC----------TTCCCC---SCCCEE--EEEESCTTSCSEEEEECCCCCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCccee----------ecCCCC---cccceE--EEEecCCCCCcEEEEcCCCCCc
Confidence 4568999999999999999999833221111 111111 111222 22233 33456899999994
Q ss_pred --------cccchhhhhcccC---ceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC--HHH
Q psy3450 135 --------GRFCTIIRSYSRG---AQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT--TRE 201 (432)
Q Consensus 135 --------e~~~~l~~~~~~~---ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~--~ee 201 (432)
+.+..+...|++. +|++|+|+|+++..+.. ...|+..+.. .++|+++|+||+|+...+++. .++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~ 168 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRA 168 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHH
Confidence 4445666667655 89999999998865432 2455665554 458999999999996543321 122
Q ss_pred HHHHHHh-------cCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 202 AEMYAIK-------NQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 202 ~~~~a~~-------~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
..+.... .+.+++++||++|.||+++|++|.+.+..
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 169 TQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 2222222 45689999999999999999999998854
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.83 E-value=3e-21 Score=185.74 Aligned_cols=151 Identities=18% Similarity=0.151 Sum_probs=111.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch-
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT- 139 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~- 139 (432)
.||+++|.+|||||||+|+|.. ..+. ....++ .+++.....+.+++. .+.+|||||+..+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g-~~~~---------v~~~pg-----~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~ 64 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN-ANQR---------VGNWPG-----VTVEKKTGEFLLGEH--LIEITDLPGVYSLVAN 64 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT-TSEE---------EEECTT-----SSSEEEEEEEEETTE--EEEEEECCCCSSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCC---------ccCCCC-----ceEEEEEEEEEECCe--EEEEEeCCCccccccc
Confidence 4899999999999999999832 2221 111122 235667777777775 679999999987764
Q ss_pred ---------hhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 140 ---------IIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 140 ---------l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
+...|+ +++|++|+|+|+++.+++..+..| +.+ .++|+++|+||+|+...+.+.. ....+++.
T Consensus 65 ~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~ 138 (256)
T 3iby_A 65 AEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE--LGKPVVVALNMMDIAEHRGISI-DTEKLESL 138 (256)
T ss_dssp ----CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT--SCSCEEEEEECHHHHHHTTCEE-CHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH--cCCCEEEEEEChhcCCcCCcHH-HHHHHHHH
Confidence 455677 899999999999986554443333 333 2589999999999865443322 24557788
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
++++++++||++|.|++++|++|.+.
T Consensus 139 lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 89999999999999999999999876
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=2.2e-21 Score=179.86 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=104.5
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
....+||+++|++|||||||+++| .+..+... ...+.++++ .++ ..+.+.+|||+|++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l-~~~~~~~~------~~~~~~~~~-----~~~---------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLL-TTDSVRPT------VVSQEPLSA-----ADY---------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHH-HHSSCCCB------CCCSSCEEE-----TTG---------GGSSCEEEECCCCGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH-hcCCCCCe------eeecCceEE-----EEe---------eCceEEEEECCCcHH
Confidence 345689999999999999999998 33333210 001111111 111 345689999999999
Q ss_pred cchhhhhcccC----ceEEEEEEeCC-CCCChhhHHHHHHHHHhh-----CCCCcEEEEEECccCCCCcccC------HH
Q psy3450 137 FCTIIRSYSRG----AQGILLVYDIT-NKWSFDGIDRWLKEVEEH-----APGVPKVLVGNRLHLAFNRTVT------TR 200 (432)
Q Consensus 137 ~~~l~~~~~~~----ad~iIlV~Dvt-~~~Sf~~l~~~l~~i~~~-----~~~iPiILVgNK~DL~~~r~v~------~e 200 (432)
+...+..++++ +|++|+|||++ ++++|..+..|+.++... ..++|+++|+||+|+...+.+. .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 147 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 147 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHH
Confidence 99988888887 89999999999 889999999998887653 2579999999999998766544 45
Q ss_pred HHHHHHHhcCCcEEEEcCCCCCC
Q psy3450 201 EAEMYAIKNQMAFFEVSPLCDFN 223 (432)
Q Consensus 201 e~~~~a~~~~~~~~evSAktg~n 223 (432)
++..++...+++|+++||++|.+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 148 EIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhccccccccccccc
Confidence 67777777788999999998875
No 128
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=3.5e-20 Score=179.11 Aligned_cols=156 Identities=19% Similarity=0.102 Sum_probs=116.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.+||+++|++|||||||+|+| .+..+. ....++. +++.....+..++. .+.+|||||+..+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l-~g~~~~---------~~~~~~~-----t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNAL-TGLRQH---------VGNWPGV-----TVEKKEGIMEYREK--EFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHH-HTTCEE---------EEECTTS-----SCEEEEEEEEETTE--EEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHH-hCCCcc---------cCCCCCe-----EEEeeEEEEEECCc--eEEEEeCCCcccccc
Confidence 579999999999999999998 322221 1112222 24666667777774 479999999988766
Q ss_pred ------hhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 140 ------IIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 140 ------l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
+...|+ .++|++|+|+|+++. +....|..++... ..+|+++|+||+|+.+.+.+..+ ...+++.+++
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~ 140 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGV 140 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSS
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCC
Confidence 556666 789999999999875 3334455555543 23899999999998654444333 6778888999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++||++|.|++++|+.+.+.+..
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 141 PVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999988744
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=9.3e-20 Score=189.96 Aligned_cols=158 Identities=19% Similarity=0.152 Sum_probs=102.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+|+| .+..... ..... .+|.+.....+.+++ +.+.+|||+|++++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L-~~~~~a~----------vs~~~---gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTL-LGQERAI----------VSHMP---GTTRDYIEECFIHDK--TMFRLTDTAGLREAG 295 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHC-C-------------------------------CEEEEETT--EEEEEEC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHH-hCCCCcc----------cCCCC---CceEEEEEEEEEECC--eEEEEEECCCCCcch
Confidence 4589999999999999999997 2221100 00111 133466667777777 468999999998765
Q ss_pred hhh--------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 TII--------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ~l~--------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
..+ ..+++++|++|+|||++++.+++++..+...+... .++|+++|+||+|+...+.+. .+.+.+...
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~ 371 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADAL---IRAIADGTG 371 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHH---HHHHHHHHT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchh---HHHHHhcCC
Confidence 443 34789999999999999999987554444433333 368999999999997655432 233444434
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.+++++||++|.||+++|++|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999999885
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=1.5e-20 Score=182.38 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=111.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
.++|+++|.+|||||||+|+|. +..+.. ...++ .+++.....+..++. .+.+|||||++.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~-g~~~~v---------~~~~g-----~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT-GSRQRV---------GNWAG-----VTVERKEGQFSTTDH--QVTLVDLPGTYSLTT 65 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH-TTCEEE---------EECTT-----SSSEEEEEEEECSSC--EEEEEECCCCSCSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHh-CCCccc---------CCCCC-----eeEEEEEEEEEeCCC--ceEEEECcCCCcccc
Confidence 4799999999999999999983 222211 11122 234666666666664 468899999987762
Q ss_pred ----------hhhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 140 ----------IIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 140 ----------l~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
+...|+ +++|++|+|+|+++.+.+ ..|...+.+. ++|+++|+||+|+.+.+.+. .+...+++
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~ 139 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIR-IEIDALSA 139 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHHH--TCCEEEEEECHHHHHHTTEE-ECHHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHhc--CCCEEEEEECccchhhhhHH-HHHHHHHH
Confidence 223333 799999999999985544 3444444443 58999999999986543332 23466778
Q ss_pred hcCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 208 KNQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 208 ~~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
.++++++++||++|.|++++|++|.+.+.
T Consensus 140 ~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 140 RLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999999987653
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=4.4e-19 Score=178.31 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=118.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...++|+++|.+|||||||+++| .+..+... ..+ .++.+.....+..++ ..+.+|||+|...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L-~~~~~~~~---------~~~-----~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKAL-TTAKPEIA---------SYP-----FTTRGINVGQFEDGY--FRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHH-CSSCCEEE---------CCT-----TCSSCEEEEEEEETT--EEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hCCCCccC---------CCC-----CeeeceeEEEEEecC--ceEEEEeCCCcccc
Confidence 35679999999999999999998 32222100 000 011233333344443 56899999998543
Q ss_pred ch---------hhhhcccCceEEEEEEeCCCCC--ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 138 CT---------IIRSYSRGAQGILLVYDITNKW--SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 138 ~~---------l~~~~~~~ad~iIlV~Dvt~~~--Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
.. ....+...+|++|+|+|+++.. +++....|+.++....++.|+++|+||+|+...+.+ +++.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~ 305 (357)
T 2e87_A 228 PISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI--KRLEKFV 305 (357)
T ss_dssp CSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHH--HHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHH--HHHHHHH
Confidence 21 1223456799999999999887 778888999999876657999999999999754433 5566777
Q ss_pred HhcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 207 IKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 207 ~~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+..+++++++||++|.||+++|++|.+.+..
T Consensus 306 ~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 306 KEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 7888999999999999999999999998854
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=4.2e-20 Score=189.71 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=118.4
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.....+||+|+|+.|+|||||+++| .+..+... ... ..++++.....+.+.+. ..+.+|||||++
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L-~~~~~~~~----------~~~---~gtT~d~~~~~~~~~~~-~~l~liDTpG~~ 94 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNAL-VGQNVSIV----------SDY---AGTTTDPVYKSMELHPI-GPVTLVDTPGLD 94 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSS-CC--------------------------CCCCEEEEEETTT-EEEEEEECSSTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHH-HcCCCCcc----------CCC---CCeeeeeEEEEEEECCC-CeEEEEECcCCC
Confidence 4456789999999999999999997 33322110 011 11234666677777664 368999999998
Q ss_pred ccchh-------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 136 RFCTI-------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 136 ~~~~l-------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
++..+ ...+++++|++|+|||++. ......|+..+.+. ++|+++|+||+|+...+.. +.++.+++.
T Consensus 95 d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~--~~~~~l~~~ 167 (423)
T 3qq5_A 95 DVGELGRLRVEKARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE--ELKGLYESR 167 (423)
T ss_dssp CCCTTCCCCHHHHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT--HHHHHSSCC
T ss_pred cccchhHHHHHHHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH--HHHHHHHHH
Confidence 87655 2347889999999999832 23447788887776 5899999999999765544 566677777
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
++++++++||++|.|++++|++|.+.+.+.
T Consensus 168 ~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 YEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 889999999999999999999999988554
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=6.9e-19 Score=183.61 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=113.2
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc-ccc
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-RFC 138 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-~~~ 138 (432)
.+||+++|.+|||||||+|+|...+.... ... ..+|.++....+.+++. .+.+|||+|++ ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v-----------s~~---~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV-----------TDI---PGTTRDVISEEIVIRGI--LFRIVDTAGVRSETN 306 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC-----------CCS---SCCSSCSCCEEEEETTE--EEEEEESSCCCSSCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc-----------CCC---CCeeeeeEEEEEecCCe--EEEEEECCCccccch
Confidence 48999999999999999999833321110 001 11334666677778774 57999999988 654
Q ss_pred h--------hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 T--------IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ~--------l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
. ....+++.+|++|+|||++++.++++.. +++.+ .+.|+++|+||+|+... +..+++.+++. .+
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~ 378 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TD 378 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CS
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccc--cCHHHHHHHhc-CC
Confidence 2 2345789999999999999998887643 33333 36899999999999643 44555555432 44
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++++||++|.||+++|++|.+.+..
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999997653
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=3e-19 Score=178.66 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=115.8
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc----c
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG----R 136 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e----~ 136 (432)
.+|+|+|.+|||||||+++|.........+ ..+|++.....+.+++ ...+.||||||+. +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~---------------~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADY---------------HFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESST---------------TSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccC---------------CccccCceEEEEEeCC-CceEEEecCCCCcccccc
Confidence 368899999999999999973221110000 0112233333455554 2468999999963 3
Q ss_pred cchhhhhccc---CceEEEEEEeCCC---CCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 137 FCTIIRSYSR---GAQGILLVYDITN---KWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 137 ~~~l~~~~~~---~ad~iIlV~Dvt~---~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
+..+...|++ .+|++|+|+|+++ +++++++..|+.++..+. .++|++||+||+|+...+ +..+++++
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~ 298 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKE 298 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHH
Confidence 4445566654 4999999999998 788999999999998865 479999999999996422 44566777
Q ss_pred hcC--CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 208 KNQ--MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 208 ~~~--~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.++ .+++++||+++.|++++|++|.+.+.+
T Consensus 299 ~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 299 KLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 766 689999999999999999999998854
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=1.1e-18 Score=173.16 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=104.3
Q ss_pred ceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCC----------CCCChhhHHHHHHHHHhhC--C
Q psy3450 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDIT----------NKWSFDGIDRWLKEVEEHA--P 178 (432)
Q Consensus 111 d~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt----------~~~Sf~~l~~~l~~i~~~~--~ 178 (432)
.+....+.+++ +.+++|||+||++++.+|..|+++++++|+|||++ +..+|++...|+..+.... .
T Consensus 156 Gi~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 156 GIIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp SEEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eEEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 34445555554 78999999999999999999999999999999665 6677888878888876543 6
Q ss_pred CCcEEEEEECccCCCCc----------------ccCHHHHHHHHH----------hcCCcEEEEcCCCCCCHHHHHHHHH
Q psy3450 179 GVPKVLVGNRLHLAFNR----------------TVTTREAEMYAI----------KNQMAFFEVSPLCDFNIRESFTELS 232 (432)
Q Consensus 179 ~iPiILVgNK~DL~~~r----------------~v~~ee~~~~a~----------~~~~~~~evSAktg~nI~elf~~L~ 232 (432)
++|++|+|||+||.+++ .++.+++.+++. ..++.++++||+++.||+++|+.+.
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 79999999999996543 467888888843 3556789999999999999999999
Q ss_pred HHHhhhc
Q psy3450 233 RRALQRN 239 (432)
Q Consensus 233 ~~i~~~~ 239 (432)
+.+++++
T Consensus 314 ~~Il~~~ 320 (327)
T 3ohm_A 314 DTILQLN 320 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998754
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=2.2e-18 Score=177.96 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=105.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc---
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF--- 137 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~--- 137 (432)
.+|+++|++|||||||+|+| .+.+... .....| .|.+.....+.+++.. +++|||+|++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl-~~~~~~~----------v~~~~g---~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKL-VKKKKAI----------VEDEEG---VTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQD 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HC---------------------------CCSEEEEEETTEE--EEEEECTTTTSSGGG
T ss_pred CEEEEECCCCCCHHHHHHHH-hCCCCce----------ecCCCC---CccceeeEEEEECCeE--EEEEECCCccccccc
Confidence 37999999999999999998 3333211 011112 2246666777788754 689999998742
Q ss_pred ------chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHH-HHHHHhcC
Q psy3450 138 ------CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREA-EMYAIKNQ 210 (432)
Q Consensus 138 ------~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~-~~~a~~~~ 210 (432)
......+++++|++|+|||+++..++.+ .|+..+.+. .++|++||+||+|+.+. . ..++ .++. ..+
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~-~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg 138 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK-STVDTILVANKAENLRE--F-EREVKPELY-SLG 138 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH-HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGS
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH-cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcC
Confidence 3345668899999999999998766543 222222211 25899999999998421 1 1223 3443 456
Q ss_pred C-cEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 211 M-AFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 211 ~-~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+ +++++||++|.|++++|+++.+.+.+.
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 6 789999999999999999999988643
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=2.4e-17 Score=168.35 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=115.1
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcc---ccc-----CCCCcCccccCCCccccccceeEEEEEECCeEEEEEE
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPR---FWL-----DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQL 128 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~---~~~-----~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i 128 (432)
....+||+++|.+|+|||||+++|. +..... ... ...................... ........+.|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i 79 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAIT-GIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSD----DEPKFLRRISF 79 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHH-SCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCC----SCCEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHh-CcccccccCccccceeeccccccccceeccccccccccc----ccccccceEEE
Confidence 3456899999999999999999983 211110 000 0000000000000000000000 00123467899
Q ss_pred EeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHHHHHHH
Q psy3450 129 WDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTREAEMYA 206 (432)
Q Consensus 129 ~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee~~~~a 206 (432)
|||||+++|......++..+|++|+|+|+++..++....+|+..+.... ..|+++|+||+|+.+..+. ..++..++.
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999887888888888776653 2589999999999653321 122333333
Q ss_pred Hhc---CCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 207 IKN---QMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 207 ~~~---~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+.. +++++++||++|.|++++|+.|.+.+.
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 332 568999999999999999999988663
No 138
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.3e-19 Score=178.20 Aligned_cols=172 Identities=19% Similarity=0.290 Sum_probs=99.4
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC--
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~-- 134 (432)
.+..++|+|+|++|+|||||+++++....+...+..... ....++++ +++....+..++..+.+.+|||+|+
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~-~~~~~ti~-----~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAA-EKIERTVQ-----IEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC----------------CEE-----EEEEEEC----CEEEEEEEEC------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC-cccCCcee-----EEEEEEEeecCCcccceEEEEeccccc
Confidence 356789999999999999999998665555432211000 00011211 2333334445677789999999999
Q ss_pred -----cccchhhh-------hcccCceEE-----------EEEEeCCC-CCChhhHH-HHHHHHHhhCCCCcEEEEEECc
Q psy3450 135 -----GRFCTIIR-------SYSRGAQGI-----------LLVYDITN-KWSFDGID-RWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 135 -----e~~~~l~~-------~~~~~ad~i-----------IlV~Dvt~-~~Sf~~l~-~~l~~i~~~~~~iPiILVgNK~ 189 (432)
+.+..+.. .|++.++++ +++|++++ ..++..+. .|+..+ ..++|+|+|+||+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~ 184 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKA 184 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECC
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECC
Confidence 67777766 666555443 46777765 56777774 455444 3578999999999
Q ss_pred cCCCCcccCH--HHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 190 HLAFNRTVTT--REAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 190 DL~~~r~v~~--ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
|+...+++.. +++.++++.++++++++||++|.| ++.|.++.+.+...
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 9976665544 567777888899999999999999 99999999888654
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=1.6e-18 Score=179.99 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=102.3
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|++|||||||+|+|...+..... ..+ | ++.++....+.+++. .+.+|||+|..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~---------~~~--g---tT~d~~~~~i~~~g~--~v~liDT~G~~~~~ 286 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT---------DLP--G---TTRDVVESQLVVGGI--PVQVLDTAGIRETS 286 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS---------CCT--T---CCHHHHHHEEEETTE--EEEECC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc---------CCC--C---eeEEEEEEEEEECCE--EEEEEECCccccch
Confidence 4589999999999999999998332211000 001 1 234555556667774 56999999986654
Q ss_pred hhh--------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 139 TII--------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 139 ~l~--------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
... ..+++.+|++|+|||++++.++.. ..|+..+. +.|+++|+||+|+...+.+. ....+. .+
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~ 357 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLVEKQLIT--SLEYPE--NI 357 (462)
T ss_dssp ------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSSCGGGST--TCCCCT--TC
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCCcchhhH--HHHHhc--cC
Confidence 332 236789999999999999877655 45665553 36999999999997654433 111111 34
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 211 MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 211 ~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.+++++||++|.|++++|++|.+.+..
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999998854
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=2.1e-18 Score=167.00 Aligned_cols=167 Identities=15% Similarity=0.227 Sum_probs=95.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc--
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG-- 135 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e-- 135 (432)
...++|+|+|.+|+|||||+|+++..+.+...+.... ....++++ ++.....+..++..+.+.+|||||..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~--~~~~~t~~-----~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS--HRIKKTVQ-----VEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------CC-----CEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcc--cccCCceE-----EEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4679999999999999999999866666554321110 11122222 34455555556667899999999973
Q ss_pred -----ccchhh-------hhccc-------------CceEEEEEEeCCCCCChhhH-HHHHHHHHhhCCCCcEEEEEECc
Q psy3450 136 -----RFCTII-------RSYSR-------------GAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 136 -----~~~~l~-------~~~~~-------------~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
.+..+. ..|++ ++|++++++|.++.. +... ..++..+.. ++|+|+|+||+
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~ 154 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKA 154 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSG
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEecc
Confidence 233332 33333 377999999776532 3333 445555544 68999999999
Q ss_pred cCCCCcccC--HHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 190 HLAFNRTVT--TREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 190 DL~~~r~v~--~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
|+....+.. .+.+.+.....+++++++||+++.|+++++++|.+.+
T Consensus 155 D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 155 DTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 986433221 1234555567789999999999999999999987654
No 141
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.74 E-value=3.8e-18 Score=170.12 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred eeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCC----------CCCChhhHHHHHHHHHhhC--CC
Q psy3450 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDIT----------NKWSFDGIDRWLKEVEEHA--PG 179 (432)
Q Consensus 112 ~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt----------~~~Sf~~l~~~l~~i~~~~--~~ 179 (432)
+....+.++ .+.+++|||+||++++.+|..|+++++++|+|||++ +..+|++...|+..+.... .+
T Consensus 151 i~~~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~ 228 (340)
T 4fid_A 151 IHEYDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG 228 (340)
T ss_dssp CEEEEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred eEEEEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence 334444444 478999999999999999999999999999999998 7788888888888877543 67
Q ss_pred CcEEEEEECccCCCCc---------------ccCHHHHHHHHHh-c--------------------------CCcEEEEc
Q psy3450 180 VPKVLVGNRLHLAFNR---------------TVTTREAEMYAIK-N--------------------------QMAFFEVS 217 (432)
Q Consensus 180 iPiILVgNK~DL~~~r---------------~v~~ee~~~~a~~-~--------------------------~~~~~evS 217 (432)
+|++|+|||+||..++ ....+++.+++.+ + .+.++++|
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 9999999999984321 1246677665533 2 36789999
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy3450 218 PLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 218 Aktg~nI~elf~~L~~~i~~ 237 (432)
|++..||+++|+.+.+.|++
T Consensus 309 A~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999976
No 142
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=4.6e-18 Score=177.62 Aligned_cols=163 Identities=13% Similarity=0.150 Sum_probs=100.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCccc--------------------ccCCCCcCccccCCCccccccceeEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRF--------------------WLDGSSESPFCSGSGKYDDMLAYKTTT 116 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~--------------------~~~~~~~~~~~~~ig~~~~tid~~~~~ 116 (432)
...+||+++|.+|+|||||+++|+.. ..+... +...........++ +++.....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~Gi-----Ti~~~~~~ 105 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV-----TVSICTSH 105 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCS-----SCCCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCc-----ceEeeeEE
Confidence 35689999999999999999998332 111110 00111111111122 23333333
Q ss_pred EEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhh-----HHHHHHHHHhhCCCCcEEEEEECccC
Q psy3450 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDG-----IDRWLKEVEEHAPGVPKVLVGNRLHL 191 (432)
Q Consensus 117 i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~-----l~~~l~~i~~~~~~iPiILVgNK~DL 191 (432)
++....++.||||||+++|......+++.+|++|+|+|+++..++.. ...+...+.......|+|||+||+|+
T Consensus 106 --~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 106 --FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp --EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred --EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 33445678999999999999988999999999999999998754322 12222222222233579999999999
Q ss_pred CCCcccCHHHHH----HHHHhc-----CCcEEEEcCCCCCCHHHH
Q psy3450 192 AFNRTVTTREAE----MYAIKN-----QMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 192 ~~~r~v~~ee~~----~~a~~~-----~~~~~evSAktg~nI~el 227 (432)
.+.++...+++. .+.+.. +++++++||++|.|++++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 764444334333 333333 358999999999999863
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=155.87 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=106.7
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
..+..+||+|+|++|||||||+|+|. +..+.. ...++. ..+.+.....+.+++. .+.||||||..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~-g~~~~~---------~~~~~~---~~t~~~~~~~~~~~~~--~i~liDTpG~~ 89 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSIL-GRKVFH---------SGTAAK---SITKKCEKRSSSWKET--ELVVVDTPGIF 89 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHH-TSCCSC---------C----------CCSCEEEEEEETTE--EEEEEECCSCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHc-CCCcCc---------cCCCCC---ceeeeEEEEEEEeCCc--eEEEEECCCcc
Confidence 34567999999999999999999983 322211 111110 1223555556667764 57999999943
Q ss_pred -----------ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccC---
Q psy3450 136 -----------RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVT--- 198 (432)
Q Consensus 136 -----------~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~--- 198 (432)
.+......+++++|++|+|+|+++.... ...|+..+.... ...|++||+||+|+...+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i 167 (239)
T 3lxx_A 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL 167 (239)
T ss_dssp -----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH
Confidence 3444445566789999999999865442 234444443321 235999999999986544433
Q ss_pred ---HHHHHHHHHhcCCcEEEEcCCCC-----CCHHHHHHHHHHHHhh
Q psy3450 199 ---TREAEMYAIKNQMAFFEVSPLCD-----FNIRESFTELSRRALQ 237 (432)
Q Consensus 199 ---~ee~~~~a~~~~~~~~evSAktg-----~nI~elf~~L~~~i~~ 237 (432)
.+.++.++++.+..|+.+++..+ .++.++|+.+.+.+.+
T Consensus 168 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 168 REAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ---CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 24677888888888888887754 6899999998887754
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.73 E-value=2.9e-17 Score=165.71 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=109.5
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc------
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG------ 135 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e------ 135 (432)
.|+++|.+|||||||+|+|. +..+.. .+...+|.+.....+.+++. .+.+|||+|.-
T Consensus 181 ~V~lvG~~naGKSTLln~L~-~~~~~~--------------~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~ 243 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT-GLTQKV--------------DTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQ 243 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH-CC-------------------------CCSCEEEEEETTE--EEEEEECCCBCSSCCGG
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCccc--------------cCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHH
Confidence 49999999999999999983 222110 01112334666777888884 56999999962
Q ss_pred ---ccchhhhhcccCceEEEEEEeCCCCC--ChhhHHHHHHHHHhhC-CCCcEEEEEECccCCCCccc-CHHHHHHHHHh
Q psy3450 136 ---RFCTIIRSYSRGAQGILLVYDITNKW--SFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTV-TTREAEMYAIK 208 (432)
Q Consensus 136 ---~~~~l~~~~~~~ad~iIlV~Dvt~~~--Sf~~l~~~l~~i~~~~-~~iPiILVgNK~DL~~~r~v-~~ee~~~~a~~ 208 (432)
.|...+ ..+..+|++++|+|++++. .++.+..|...+.... .+.|+++|+||+|+...... ..+.+..+++.
T Consensus 244 lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 244 IVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE 322 (364)
T ss_dssp GHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH
Confidence 233332 3578899999999999886 5666666766666554 57899999999998653310 01233344455
Q ss_pred c---CCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 209 N---QMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 209 ~---~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+ +.+++++||++|.|++++++.|.+.+...
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 4 24789999999999999999999877543
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=1.9e-17 Score=176.67 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=114.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcC-CCCcccccCCCCcCc--cccCCCccccccceeEEEEEE---CCeEEEEEEEeCC
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGSSESP--FCSGSGKYDDMLAYKTTTILL---DGKRVKLQLWDTS 132 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~~~~~--~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~Dt~ 132 (432)
...+|+++|..++|||||+++|+.. +.+............ .....| .|+......+.+ ++..+.++|||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG---iTi~~~~~~~~~~~~~g~~~~l~liDTP 79 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG---ITIKAQSVTLDYKASDGETYQLNFIDTP 79 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc---ceeeeeEEEEEEecCCCCeEEEEEEECC
Confidence 4679999999999999999998431 111110000000000 000111 112222333333 5667899999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM- 211 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~- 211 (432)
|+++|...+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+...+ ..+...++.+.+++
T Consensus 80 Gh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 80 GHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID 154 (599)
T ss_dssp CCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence 999999988999999999999999999988888888876654 358999999999996533 23334556666665
Q ss_pred --cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 212 --AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 212 --~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+++++||++|.||+++|+++.+.+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999998774
No 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=3.8e-17 Score=174.26 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=116.5
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccccCCC----CcCccccCCCccccccceeEEEEEE---CCeEEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWLDGS----SESPFCSGSGKYDDMLAYKTTTILL---DGKRVKLQLW 129 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~~~~----~~~~~~~~ig~~~~tid~~~~~i~i---~~~~v~l~i~ 129 (432)
+...+|+++|..++|||||+++|+.. +.+........ .......++ |+......+.+ ++..+.++||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGI-----TI~~~~~~~~~~~~dg~~~~inli 78 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGI-----TVKMQAVRMFYKAKDGNTYKLHLI 78 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC----------------------------CCCCSEEEEEECTTSCEEEEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccc-----eeeeeEEEEEEEcCCCCeEEEEEE
Confidence 45679999999999999999998431 11111000000 000000111 12222222322 5667899999
Q ss_pred eCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhc
Q psy3450 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN 209 (432)
Q Consensus 130 Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~ 209 (432)
||||+++|...+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+...+ ..+...++.+.+
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~--~~~v~~el~~~l 153 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSAD--VDRVKKQIEEVL 153 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCC--HHHHHHHHHHTS
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccC--HHHHHHHHHHhh
Confidence 999999998888889999999999999999988888888876554 358999999999996533 223345566666
Q ss_pred CC---cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 210 QM---AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 210 ~~---~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
++ +++++||++|.||+++|+++++.+.
T Consensus 154 g~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 154 GLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 76 4999999999999999999998774
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=8.7e-17 Score=164.43 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=104.5
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCcccc--CCCccccccceeEEEEEE-------------C--
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCS--GSGKYDDMLAYKTTTILL-------------D-- 120 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~--~ig~~~~tid~~~~~i~i-------------~-- 120 (432)
...++|+++|..++|||||+++|. +.... ........ +++ +.+....+.. +
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-g~~~~------~~~~e~~~giTi~-----~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-GVWTD------RHSEELRRGISIR-----LGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-SCCCC------C-------CCCCC-----CEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-CCccc------cCcccccCCcEEE-----eccccccccccccccccccccccccc
Confidence 456899999999999999999983 21110 01111111 221 1222222211 1
Q ss_pred C----eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc
Q psy3450 121 G----KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 121 ~----~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~ 196 (432)
+ ....+.||||||+++|.......+..+|++|+|+|+++........+.+..+... ...|+++|+||+|+.+.+.
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTT
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHH
Confidence 1 1378999999999998877777788899999999999754222223333333332 2358999999999976443
Q ss_pred --cCHHHHHHHHHhc---CCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 197 --VTTREAEMYAIKN---QMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 197 --v~~ee~~~~a~~~---~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
...+++.++++.. +++++++||++|.||++++++|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3346667777653 579999999999999999999987663
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=1.9e-17 Score=158.32 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=104.4
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...++|+|+|++|||||||+++|.....+.... .++ ..+.+.....+..++ ..+.||||||+..+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~---------~~~----~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL---------GSQ----TLTKTCSKSQGSWGN--REIVIIDTPDMFSW 84 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT---------TSC----CCCCSCEEEEEEETT--EEEEEEECCGGGGS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC---------CCC----ceeeeeEEEEEEeCC--CEEEEEECcCCCCC
Confidence 456899999999999999999984333232111 111 012344555556666 45799999998655
Q ss_pred chh-----------hhhcccCceEEEEEEeCCCCCChh-hHHHHHHHHHhhCCCCcEEEEEE-CccCCCCcccCH-----
Q psy3450 138 CTI-----------IRSYSRGAQGILLVYDITNKWSFD-GIDRWLKEVEEHAPGVPKVLVGN-RLHLAFNRTVTT----- 199 (432)
Q Consensus 138 ~~l-----------~~~~~~~ad~iIlV~Dvt~~~Sf~-~l~~~l~~i~~~~~~iPiILVgN-K~DL~~~r~v~~----- 199 (432)
... ...+++.+|++|+|||+++....+ .+..|+.++.......|+++|+| |+|+... .+..
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~ 163 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDS 163 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhc
Confidence 321 223678999999999998622211 12233333321111346666666 9999743 2222
Q ss_pred --HHHHHHHHhcCCc---E--EEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 200 --REAEMYAIKNQMA---F--FEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 200 --ee~~~~a~~~~~~---~--~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
+++..+++..+.. + +++||++|.|++++|+.|.+.+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 164 DNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 3345566666543 2 7899999999999999999988553
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=3.2e-18 Score=176.56 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=98.6
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc-----
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG----- 135 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e----- 135 (432)
.+|+++|++|||||||+|+| .+.++.. .....| .|.+.....+.+++ ..+.+|||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l-~~~~~~~----------v~~~~g---~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~ 67 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRI-AGERISI----------VEDTPG---VTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEP 67 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHH-EEEECC------------------------CEEEECTTCS--SCCEEEC---------C
T ss_pred CEEEEECCCCCCHHHHHHHH-hCCCcee----------ecCCCC---CccceEEEEEEECC--ceEEEEECCCCCCcchh
Confidence 58999999999999999997 3333321 111222 12233333333344 468999999986
Q ss_pred ---ccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC-
Q psy3450 136 ---RFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM- 211 (432)
Q Consensus 136 ---~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~- 211 (432)
.+...+..+++++|++|+|+|+++..++.+ .|+..+... .++|++||+||+|+...+. ++.++. ..++
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~ 139 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFG 139 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC---------CCCSSG-GGSSC
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchh----hHHHHH-HcCCC
Confidence 556667778999999999999998877654 444443332 4689999999999864321 111222 3455
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+++++||++|.|++++++++.+.+.+
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 78999999999999999999988753
No 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.5e-18 Score=151.97 Aligned_cols=118 Identities=17% Similarity=0.256 Sum_probs=86.1
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|++|||||||+++| .+..+... .....++.+ .++ ..+.+.+|||+|++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l-~~~~~~~~------~~~~~~~~~-----~~~---------~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLL-TTDSVRPT------VVSQEPLSA-----ADY---------DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHH-HHSSCC-----------------------CC---------CCTTCSEEEETTCCBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-hcCCCCcc------cccCCCcee-----eee---------cCCeEEEEECCCCchH
Confidence 56789999999999999999998 33332210 001111111 111 3456899999999999
Q ss_pred chhhhhcccC----ceEEEEEEeCC-CCCChhhHHHHHHHHHhh-----CCCCcEEEEEECccCCCCcc
Q psy3450 138 CTIIRSYSRG----AQGILLVYDIT-NKWSFDGIDRWLKEVEEH-----APGVPKVLVGNRLHLAFNRT 196 (432)
Q Consensus 138 ~~l~~~~~~~----ad~iIlV~Dvt-~~~Sf~~l~~~l~~i~~~-----~~~iPiILVgNK~DL~~~r~ 196 (432)
...+..++++ +|++|+|||++ +.++|..+..|+..+... .+++|+++|+||+|+...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp SCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 8888887766 89999999999 888999998888877643 25799999999999976544
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.70 E-value=1.4e-17 Score=170.21 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=111.9
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-------CCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-------SRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-------~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
...+||+++|.+++|||||+++|... ..+...............++ +++.. .+.++.....+.|||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~Gi-----Ti~~~--~~~~~~~~~~~~iiD 81 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGI-----TINTA--HVEYETAKRHYSHVD 81 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTC-----CCSCE--EEEEECSSCEEEEEE
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCC-----CEEee--eeEeccCCeEEEEEE
Confidence 35689999999999999999998331 11110000000000011122 22332 233444446789999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCcc---cCHHHHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRT---VTTREAEMYA 206 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~---v~~ee~~~~a 206 (432)
|||+++|......+++.+|++|+|+|+++... ....+|+..+... ++| +++|+||+|+..+.+ ...+++.+++
T Consensus 82 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 82 CPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999998764 3446666666553 578 899999999974222 1223566677
Q ss_pred HhcC-----CcEEEEcCCCCCC------------------HHHHHHHHHHHH
Q psy3450 207 IKNQ-----MAFFEVSPLCDFN------------------IRESFTELSRRA 235 (432)
Q Consensus 207 ~~~~-----~~~~evSAktg~n------------------I~elf~~L~~~i 235 (432)
+.++ ++++++||++|.| ++++++.|.+.+
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6665 6899999999987 666766666544
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.70 E-value=5.1e-17 Score=167.83 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=106.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCC-CCccc--------------------ccCCCCcCccccCCCccccccceeEE
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLES-RFPRF--------------------WLDGSSESPFCSGSGKYDDMLAYKTT 115 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~-~~~~~--------------------~~~~~~~~~~~~~ig~~~~tid~~~~ 115 (432)
....++|+++|.+++|||||+++|+... .+... +...........+ .|++....
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G-----iTid~~~~ 88 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG-----KTVEVGRA 88 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcC-----ceEEEeEE
Confidence 3457899999999999999999983221 11100 0011111111122 23455555
Q ss_pred EEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCC---hh---hHHHHHHHHHhhCCCCc-EEEEEEC
Q psy3450 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS---FD---GIDRWLKEVEEHAPGVP-KVLVGNR 188 (432)
Q Consensus 116 ~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~S---f~---~l~~~l~~i~~~~~~iP-iILVgNK 188 (432)
.+..++ .++.||||||+++|......+++.+|++|||+|+++... |+ ...+.+..+.. .++| +|+|+||
T Consensus 89 ~~~~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 89 YFETEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEecCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 555554 578999999999998888889999999999999998642 22 22223333332 3466 9999999
Q ss_pred ccCCCC------cccCHHHHHHHHHhcC------CcEEEEcCCCCCCHHHHHH
Q psy3450 189 LHLAFN------RTVTTREAEMYAIKNQ------MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 189 ~DL~~~------r~v~~ee~~~~a~~~~------~~~~evSAktg~nI~elf~ 229 (432)
+|+... .+...++...++++.+ ++++++||++|.|++++++
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 998531 1112234455555554 4799999999999999766
No 153
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.70 E-value=7.2e-19 Score=171.01 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=76.1
Q ss_pred EEEEEEeCCCCc-------------ccchhhhhcccCceEEE-EEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 124 VKLQLWDTSGQG-------------RFCTIIRSYSRGAQGIL-LVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 124 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~iI-lV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
..+.||||||.. .+..+...|++.++.+| +|+|+++..+..+...|+..+.. .+.|+++|+||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEcc
Confidence 568999999964 34556667888888766 69999886555544455555543 358999999999
Q ss_pred cCCCCcccCHHHHHHHHHh--cC-CcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 190 HLAFNRTVTTREAEMYAIK--NQ-MAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 190 DL~~~r~v~~ee~~~~a~~--~~-~~~~evSAktg~nI~elf~~L~~~ 234 (432)
|+.+++....+.++..... .+ .+++++||++|.|++++|+.+.+.
T Consensus 203 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 203 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred ccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9976544333322211001 12 368899999999999999999873
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.70 E-value=1.3e-16 Score=163.07 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=109.4
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCcccc--CCCccccccceeEEEEEE-------------C-
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCS--GSGKYDDMLAYKTTTILL-------------D- 120 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~--~ig~~~~tid~~~~~i~i-------------~- 120 (432)
....++|+++|..++|||||+++|. +... ......... +++ +.+....+.. +
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~-g~~~------~~~~~e~~~giTi~-----~~~~~~~~~~~~~~~~y~~~~~~~~ 74 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT-GVWT------DTHSEELRRGITIK-----IGFADAEIRRCPNCGRYSTSPVCPY 74 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH-TCCC------C--CGGGGSCSSSC-----CEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh-CCcc------ccChhhhcCCcEEE-----Eeeeeeecccccccccccccccccc
Confidence 3567899999999999999999983 2111 011111111 221 1222222211 1
Q ss_pred -C----eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc
Q psy3450 121 -G----KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 121 -~----~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r 195 (432)
+ ....+.||||||+++|.......+..+|++|+|+|+++........+.+..+... ...|+++|+||+|+.+..
T Consensus 75 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHH
T ss_pred cCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHH
Confidence 1 1378999999999998777777778899999999999754222223333333333 225899999999997533
Q ss_pred c--cCHHHHHHHHHh---cCCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 196 T--VTTREAEMYAIK---NQMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 196 ~--v~~ee~~~~a~~---~~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
. ...+++.++++. .+++++++||++|.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2 233455566554 3579999999999999999999987663
No 155
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1.2e-17 Score=164.07 Aligned_cols=134 Identities=17% Similarity=0.078 Sum_probs=106.1
Q ss_pred HHHHhhhcCCCCcccccCCCCc-CccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEE
Q psy3450 75 EILSGLYLESRFPRFWLDGSSE-SPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILL 153 (432)
Q Consensus 75 SLln~L~~~~~~~~~~~~~~~~-~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIl 153 (432)
+|+.++ ..+.+. ..+.+++| ++....+..++ ++++||| +++|..+++.|++++|++|+
T Consensus 32 sl~~~~----------~~~~f~~~~~~pTiG------d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vil 90 (301)
T 1u0l_A 32 ERILCK----------LRGKFRLQNLKIYVG------DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVIL 90 (301)
T ss_dssp CEEEEE----------ECGGGTTTTCCCCTT------CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEE
T ss_pred cEEEEE----------EcccccccCCCCCCc------cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEE
Confidence 577775 333333 34567777 44443332233 6899999 89999999999999999999
Q ss_pred EEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC--CcEEEEcCCCCCCHHHHHHH
Q psy3450 154 VYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ--MAFFEVSPLCDFNIRESFTE 230 (432)
Q Consensus 154 V~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~--~~~~evSAktg~nI~elf~~ 230 (432)
|||+++++ +|+.+..|+.++.. .++|++||+||+||.+++++ ++++++++.++ ++++++||++|.||+++|..
T Consensus 91 V~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 91 VVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp EECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH
Confidence 99999997 78889999998866 46899999999999765543 55677777777 89999999999999999988
Q ss_pred HHH
Q psy3450 231 LSR 233 (432)
Q Consensus 231 L~~ 233 (432)
+..
T Consensus 167 l~g 169 (301)
T 1u0l_A 167 LKG 169 (301)
T ss_dssp HSS
T ss_pred hcC
Confidence 753
No 156
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.69 E-value=3.3e-17 Score=164.55 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=106.4
Q ss_pred ceeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCC----------CCChhhHHHHHHHHHhhC--C
Q psy3450 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN----------KWSFDGIDRWLKEVEEHA--P 178 (432)
Q Consensus 111 d~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~----------~~Sf~~l~~~l~~i~~~~--~ 178 (432)
......+.++ .+.+++|||+||+.++.+|..|+++++++|||||+++ ..+|++...|+..+.... .
T Consensus 182 Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 182 GIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp SEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 3444556665 4789999999999999999999999999999999999 456888888988887642 6
Q ss_pred CCcEEEEEECccCCCCc---------------ccCHHHHHHHHH-----------hcCCcEEEEcCCCCCCHHHHHHHHH
Q psy3450 179 GVPKVLVGNRLHLAFNR---------------TVTTREAEMYAI-----------KNQMAFFEVSPLCDFNIRESFTELS 232 (432)
Q Consensus 179 ~iPiILVgNK~DL~~~r---------------~v~~ee~~~~a~-----------~~~~~~~evSAktg~nI~elf~~L~ 232 (432)
++|+|||+||+||..++ .++.+++..++. ..++.+++|||+++.||+++|+++.
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 79999999999995332 367888888887 3567899999999999999999999
Q ss_pred HHHhhhc
Q psy3450 233 RRALQRN 239 (432)
Q Consensus 233 ~~i~~~~ 239 (432)
+.+++..
T Consensus 340 ~~i~~~~ 346 (353)
T 1cip_A 340 DVIIKNN 346 (353)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9987643
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=8.2e-17 Score=168.13 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=110.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
-..++|+++|..++|||||+++|........ .+ ........+ .|++.....+.+++ ..+.||||||+++|
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~--~d-~~~~e~~~G-----iTi~~~~~~~~~~~--~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSA--HD-KLPESQKRG-----ITIDIGFSAFKLEN--YRITLVDAPGHADL 86 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC----------------------------CCCEEEETT--EEEEECCCSSHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccc--cc-cccccccCc-----cEEecceEEEEECC--EEEEEEECCChHHH
Confidence 3568999999999999999999832221000 00 000011111 12233333444555 56899999999999
Q ss_pred chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCc--ccCHHHHHHHHHhc----CC
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNR--TVTTREAEMYAIKN----QM 211 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r--~v~~ee~~~~a~~~----~~ 211 (432)
......++..+|++|+|+|+++...-+ ..+++..+.. .++|+++|+||+|+.++. +...+++.++++.. ++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQ-TGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHH-HHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHH-HHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 888888899999999999998843222 2333333433 358899999999997532 12234555666655 57
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
+++++||++|.|+++++++|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 8999999999999999999998774
No 158
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=2.5e-16 Score=150.29 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=104.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC---
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ--- 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~--- 134 (432)
...+||+|+|.+|||||||+|+++....+.... ...+ +|.......+..++ ..+.||||||.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~----------~~~~---~T~~~~~~~~~~~~--~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL----------GATS---VTRACTTGSRRWDK--CHVEVVDTPDIFSS 83 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------CCSCEEEEEEETT--EEEEEEECCSCSST
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC----------CCCC---ccccEEEEEEEECC--cEEEEEECCCCCCC
Confidence 457999999999999999999984333322110 0111 12234444555666 45799999997
Q ss_pred -----cccchhhhhcc----cCceEEEEEEeCCCCCChhhHHHHHHHHHhhC----CCCcEEEEEECccCCCCccc----
Q psy3450 135 -----GRFCTIIRSYS----RGAQGILLVYDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTV---- 197 (432)
Q Consensus 135 -----e~~~~l~~~~~----~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~----~~iPiILVgNK~DL~~~r~v---- 197 (432)
+++......++ +++|++|+|+|+++... ....+++.+.+.. .+.|+|||+||.|+.+....
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~ 161 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVS 161 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHh
Confidence 33333233333 89999999999985321 1133344444321 25799999999999653211
Q ss_pred --CHHHHHHHHHhcCCcEEEEcCCC-----CCCHHHHHHHHHHHHhh
Q psy3450 198 --TTREAEMYAIKNQMAFFEVSPLC-----DFNIRESFTELSRRALQ 237 (432)
Q Consensus 198 --~~ee~~~~a~~~~~~~~evSAkt-----g~nI~elf~~L~~~i~~ 237 (432)
..++.+.+.+..+..|+.+++.. +.||+++++.+.+.+.+
T Consensus 162 ~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 162 NTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 11346777788888887777665 57999999999888754
No 159
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.68 E-value=3.9e-17 Score=164.01 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=99.6
Q ss_pred EEEEEECC----eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCC----------CCCChhhHHHHHHHHHhhC--
Q psy3450 114 TTTILLDG----KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDIT----------NKWSFDGIDRWLKEVEEHA-- 177 (432)
Q Consensus 114 ~~~i~i~~----~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt----------~~~Sf~~l~~~l~~i~~~~-- 177 (432)
...+.+++ +.+.+++|||+||++|+.+|..|+++++++|+|||++ +..+|+++..|++.+....
T Consensus 169 e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 169 EIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp EEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred eEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 34444555 6799999999999999999999999999999999998 7889999999999887643
Q ss_pred CCCcEEEEEECccCCCCcc--c-------------------CHHHHHHHHHh----------------cCCcEEEEcCCC
Q psy3450 178 PGVPKVLVGNRLHLAFNRT--V-------------------TTREAEMYAIK----------------NQMAFFEVSPLC 220 (432)
Q Consensus 178 ~~iPiILVgNK~DL~~~r~--v-------------------~~ee~~~~a~~----------------~~~~~~evSAkt 220 (432)
+++|+||||||+||.+++. + +.+++.+++.+ ..+.+++|||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 6899999999999854322 1 24677777543 123568999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q psy3450 221 DFNIRESFTELSRRALQR 238 (432)
Q Consensus 221 g~nI~elf~~L~~~i~~~ 238 (432)
+.||+++|+++.+.+++.
T Consensus 329 ~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 329 QKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.68 E-value=5.4e-17 Score=165.42 Aligned_cols=166 Identities=12% Similarity=0.117 Sum_probs=109.7
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCC------CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLES------RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~------~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+||+++|..++|||||+++|.... .+............. ..| .|++.. .+.++.....+.||||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g---iTi~~~--~~~~~~~~~~~~iiDtpG 75 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEER--ARG---ITINAA--HVEYSTAARHYAHTDCPG 75 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEE--ETT---EEEECE--EEEEECSSCEEEEEECSS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHH--hcC---cEEEee--eEEeccCCeEEEEEECCC
Confidence 5899999999999999999983310 010000000000000 111 122322 233444446789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCcc---cCHHHHHHHHHhc
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRT---VTTREAEMYAIKN 209 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~---v~~ee~~~~a~~~ 209 (432)
+++|......+++.+|++|+|+|+++....+... ++..+... ++| +++|+||+|+.++.. ...+++.+++++.
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 9999888888899999999999999876544433 33444443 578 789999999964221 1234566777776
Q ss_pred C-----CcEEEEcCCCCCC----------HHHHHHHHHHHH
Q psy3450 210 Q-----MAFFEVSPLCDFN----------IRESFTELSRRA 235 (432)
Q Consensus 210 ~-----~~~~evSAktg~n----------I~elf~~L~~~i 235 (432)
+ ++++++||++|.| ++++++.|.+.+
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5 5899999999775 888888887765
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.68 E-value=1.4e-16 Score=161.12 Aligned_cols=146 Identities=6% Similarity=-0.006 Sum_probs=108.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTII 141 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~ 141 (432)
+|+++|.+++|||||+++| . ....+ ++.....+..++ .++.||||||+++|....
T Consensus 23 ~i~iiG~~d~GKSTL~~~L----------~------~~giT-------i~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~ 77 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANL----------G------KKGTS-------SDITMYNNDKEG--RNMVFVDAHSYPKTLKSL 77 (370)
T ss_dssp EEEEEESTTSSHHHHHHTT----------S------EEEEE-------SSSEEEEECSSS--SEEEEEECTTTTTCHHHH
T ss_pred EEEEECCCCCCHHHHHHHH----------H------hCCEE-------EEeeEEEEecCC--eEEEEEECCChHHHHHHH
Confidence 8999999999999999998 2 11122 233333333333 468999999999997777
Q ss_pred hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEE-CccCCCCcccCH--HHHHHHHHhcC---CcEE
Q psy3450 142 RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGN-RLHLAFNRTVTT--REAEMYAIKNQ---MAFF 214 (432)
Q Consensus 142 ~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgN-K~DL~~~r~v~~--ee~~~~a~~~~---~~~~ 214 (432)
...++.+|++|+|+| + ...+....+|+..+... ++|. ++|+| |+|+ +.+.+.. +++.++++..+ ++++
T Consensus 78 ~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 78 ITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp HHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred HHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 778899999999999 4 44566667777766654 4677 88999 9999 5332222 45556665543 6899
Q ss_pred E--EcCCC---CCCHHHHHHHHHHHHhh
Q psy3450 215 E--VSPLC---DFNIRESFTELSRRALQ 237 (432)
Q Consensus 215 e--vSAkt---g~nI~elf~~L~~~i~~ 237 (432)
+ +||++ |.|++++++.|.+.+..
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9 99999 99999999999987643
No 162
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.67 E-value=2.7e-17 Score=161.67 Aligned_cols=172 Identities=17% Similarity=0.230 Sum_probs=91.2
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC--
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ-- 134 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~-- 134 (432)
.+..++|+|+|++|||||||+++++..+.++....... .....++.+ .+.....+..++....+.+|||+|+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~-g~~~~~t~~-----~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGA-AEKIERTVQ-----IEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccC-CcccCCcce-----EeeEEEEecCCCcccCcchhhhhhhhh
Confidence 45668999999999999999999755434443211000 000011111 1222222333555678999999998
Q ss_pred -----cccchhhh-------hcccCc-------------eEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 135 -----GRFCTIIR-------SYSRGA-------------QGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 135 -----e~~~~l~~-------~~~~~a-------------d~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
+.+..+.. .++++. ++++++.+.+ ..+|+.+. .+.++....+.|+++|+||.
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~--~~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLD--VAFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHH--HHHHHHHTTTSCEEEEECCG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHH--HHHHHHHHhcCCEEEEEEeC
Confidence 56655554 444332 3333333322 23566654 23444444568999999999
Q ss_pred cCCCCccc--CHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 190 HLAFNRTV--TTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 190 DL~~~r~v--~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
|+..++++ ..+++.++++.++++|+++||++| |++++|.++.+.+...
T Consensus 166 Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 166 DTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 99754443 346788899999999999999999 9999999999988653
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.67 E-value=1.2e-17 Score=172.23 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=104.8
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcC-CCCccccc---------CCC-----------CcCccccCCCccccccceeEEEE
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFWL---------DGS-----------SESPFCSGSGKYDDMLAYKTTTI 117 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~~---------~~~-----------~~~~~~~~ig~~~~tid~~~~~i 117 (432)
..+||+++|..++|||||+++|+.. ..+..... .+. .......+ .|++.....+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~g-----iTi~~~~~~~ 79 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG-----VTINLTFMRF 79 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC----------------CEE
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcC-----ceeEeeEEEE
Confidence 4689999999999999999998332 12211100 000 00000011 1223332233
Q ss_pred EECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-----CCC-cEEEEEECccC
Q psy3450 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-----PGV-PKVLVGNRLHL 191 (432)
Q Consensus 118 ~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-----~~i-PiILVgNK~DL 191 (432)
+.....+.||||||+++|......+++.+|++|+|+|+++ .+|+.+..|..+.++.. .++ |+++|+||+|+
T Consensus 80 --~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 80 --ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp --ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred --ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 3334678999999999998888889999999999999998 67775544433332211 133 68999999999
Q ss_pred CCCc------ccCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHHHHH
Q psy3450 192 AFNR------TVTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 192 ~~~r------~v~~ee~~~~a~~~~-----~~~~evSAktg~nI~elf~ 229 (432)
.+.. +...+++.++++..+ ++++++||++|.|+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 157 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 6521 122455677777765 6799999999999987654
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=7.5e-17 Score=166.24 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=106.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCC-cccccCC-CCcCccccCCCc----------------cccccceeEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRF-PRFWLDG-SSESPFCSGSGK----------------YDDMLAYKTTTILL 119 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~-~~~~~~~-~~~~~~~~~ig~----------------~~~tid~~~~~i~i 119 (432)
...+||+++|..++|||||+++|...... ....... ........+.+. ...|++.....+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 45689999999999999999998433211 0000000 000000000000 0112233222333
Q ss_pred CCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcc---
Q psy3450 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRT--- 196 (432)
Q Consensus 120 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~--- 196 (432)
.....+.||||||+++|......+++.+|++|+|+|+++... ....+|+..+.... -.|+|+|+||+|+.+..+
T Consensus 101 -~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~-~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 -TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG-IKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp -CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT-CCEEEEEEECTTTTTSCHHHH
T ss_pred -cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-CCeEEEEEEcCcCCcccHHHH
Confidence 334678999999999998888888999999999999998763 33455665554432 236999999999965211
Q ss_pred -cCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHHHHH
Q psy3450 197 -VTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 197 -v~~ee~~~~a~~~~-----~~~~evSAktg~nI~elf~ 229 (432)
...++..++++.++ ++++++||++|.|++++|+
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 12345667777777 6899999999999998644
No 165
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.66 E-value=1.7e-16 Score=161.46 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=102.4
Q ss_pred eeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCC----------CCChhhHHHHHHHHHhhC--CC
Q psy3450 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN----------KWSFDGIDRWLKEVEEHA--PG 179 (432)
Q Consensus 112 ~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~----------~~Sf~~l~~~l~~i~~~~--~~ 179 (432)
...+.+.+++ +.++||||+||+.++.+|..|+++++++|||||+++ ..+|+++..|+..+.... ++
T Consensus 207 i~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~ 284 (402)
T 1azs_C 207 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 284 (402)
T ss_dssp EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS
T ss_pred eEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC
Confidence 3345566665 889999999999999999999999999999999999 889999999999988753 68
Q ss_pred CcEEEEEECccCCCCcc---c---------------------------CHHHHHHHH-----Hh--------cCCcEEEE
Q psy3450 180 VPKVLVGNRLHLAFNRT---V---------------------------TTREAEMYA-----IK--------NQMAFFEV 216 (432)
Q Consensus 180 iPiILVgNK~DL~~~r~---v---------------------------~~ee~~~~a-----~~--------~~~~~~ev 216 (432)
+|+||||||+||..++. + ..+++..|+ +. .++.++++
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 99999999999854332 2 135666664 22 24567899
Q ss_pred cCCCCCCHHHHHHHHHHHHhhh
Q psy3450 217 SPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 217 SAktg~nI~elf~~L~~~i~~~ 238 (432)
||+++.||+++|+.+.+.+++.
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999888654
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.66 E-value=5.5e-18 Score=178.52 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=106.5
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
..+|+++|++|+|||||+++| .+..+..... ++++ .++....+..++ ...+.||||||++.|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L-~~~~~~~~~~---------~giT-----~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKL-RKTQVAAMEA---------GGIT-----QHIGAFLVSLPS-GEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHH-HHHHHHHSSS---------CCBC-----CCTTSCCBCSSC-SSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHH-hCCCcccccC---------Ccee-----EEEeEEEEEeCC-CCEEEEEECCChHHHHH
Confidence 468999999999999999997 3333322111 1110 111111222211 12579999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc-CHHHHHHH---HHhc--CCcE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV-TTREAEMY---AIKN--QMAF 213 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v-~~ee~~~~---a~~~--~~~~ 213 (432)
++..+++.+|++|||+|+++....+....| ..+.. .++|+++|+||+|+.+.+.. ..++...+ +..+ .+++
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEE
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceE
Confidence 999999999999999999987765544333 33333 45899999999999643211 11222211 1122 2489
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 214 FEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~~i~ 236 (432)
+++||++|.|++++|+.+...+.
T Consensus 145 v~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCchhHHHHHHHhhh
Confidence 99999999999999999998763
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.66 E-value=3.4e-16 Score=165.09 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=85.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccc---c----CCCCcCc-----cccCCCccccccceeEEEEEECCeEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFW---L----DGSSESP-----FCSGSGKYDDMLAYKTTTILLDGKRVK 125 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~---~----~~~~~~~-----~~~~ig~~~~tid~~~~~i~i~~~~v~ 125 (432)
+...+|+|+|.+|+|||||+++|.......... . ....... ...++ ++......+..++ +.
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~Gi-----Ti~~~~~~~~~~~--~~ 83 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGI-----SVTTSVMQFPYKD--YL 83 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCC-----SSSSSEEEEEETT--EE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCe-----eEEEeEEEEEeCC--EE
Confidence 356799999999999999999983111100000 0 0000000 00111 2333344445554 67
Q ss_pred EEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 126 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 126 l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
++||||||+++|......+++.+|++|+|+|+++..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~--~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL--RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT--TTCCEEEEEECTTSCC
T ss_pred EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEeCCCCcc
Confidence 899999999999999999999999999999999988877766553 3333 3589999999999854
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=7.3e-16 Score=141.53 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=99.2
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc-
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR- 136 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~- 136 (432)
....+|+++|++|||||||++++ .+..+ .....++.|.. .....+.+++ .+.+|||+|...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l-~g~~~---------~~~~~~~~G~~-----~~~~~~~~~~---~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL-TNQKS---------LARTSKTPGRT-----QLINLFEVAD---GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT-CCC---------------------------CCEEEEEEET---TEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHH-hCCCc---------cccccCCCccc-----eeeEEEEecC---CEEEEECcCCccc
Confidence 34579999999999999999997 22221 11122333311 1122233333 468999999742
Q ss_pred ---------cchhhhhcc---cCceEEEEEEeCCCCCChhh--HHHHHHHHHhhCCCCcEEEEEECccCCCC--cccCHH
Q psy3450 137 ---------FCTIIRSYS---RGAQGILLVYDITNKWSFDG--IDRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTTR 200 (432)
Q Consensus 137 ---------~~~l~~~~~---~~ad~iIlV~Dvt~~~Sf~~--l~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~e 200 (432)
+......++ +.++++++++|+++..++.+ +..|+. . .++|+++|+||+|+... ++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~ 160 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLN 160 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHH
Confidence 222233344 57899999999998876643 233332 2 35899999999998643 222234
Q ss_pred HHHHHHHhcC--CcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 201 EAEMYAIKNQ--MAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 201 e~~~~a~~~~--~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+..++.+.+ +.++++||+++.|++++++.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 161 MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5566665554 5789999999999999999998876
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=5.6e-17 Score=168.19 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=98.7
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC------
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG------ 133 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G------ 133 (432)
..+|+|+|++|||||||+|+| .+.++... ....| .+.+.. ...++.....+.+|||+|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l-~~~~~~~v----------~~~~g---~t~~~~--~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRI-AGERISIV----------EDTPG---VTRDRI--YSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHH-EEEEEC------------------------CE--EEECTTCSSCCEEECCCC------
T ss_pred CCEEEEECCCCCcHHHHHHHH-hCCCCccc----------CCCCC---cceeEE--EEEEEECCceEEEEECCCCCCcch
Confidence 469999999999999999997 43333211 11112 111222 223333345789999999
Q ss_pred --CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 134 --QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 134 --~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
++++......+++++|++|+|+|..+. +.....|+.++... .++|++||+||+|+.+.+ ++..++. ..+.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~ 158 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR-TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGF 158 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT-CCSCEEEEEECC-------------CCSG-GGSS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH-cCCCEEEEEECccchhhh----hhHHHHH-HcCC
Confidence 666777788889999999999998764 33444555554433 468999999999985422 1111111 2233
Q ss_pred -cEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 212 -AFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 212 -~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.++++||++|.|++++++.+.+.+..
T Consensus 159 ~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 159 GEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred CceEEeecccccchHHHHHHHHhhccc
Confidence 56799999999999999999876643
No 170
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.64 E-value=2.1e-16 Score=159.21 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=97.7
Q ss_pred eeEEEEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCC----------CCChhhHHHHHHHHHhhC--CC
Q psy3450 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN----------KWSFDGIDRWLKEVEEHA--PG 179 (432)
Q Consensus 112 ~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~----------~~Sf~~l~~~l~~i~~~~--~~ 179 (432)
...+.+.+++ +.+++|||+|++.++.+|..|+++++++|||||+++ ..+|++...|+..+.... .+
T Consensus 191 i~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 191 IHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp EEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 3445556654 789999999999999999999999999999999999 678999999999887642 68
Q ss_pred CcEEEEEECccCCCCc----------------ccCHHHHHHHHH-----------hcCCcEEEEcCCCCCCHHHHHHHHH
Q psy3450 180 VPKVLVGNRLHLAFNR----------------TVTTREAEMYAI-----------KNQMAFFEVSPLCDFNIRESFTELS 232 (432)
Q Consensus 180 iPiILVgNK~DL~~~r----------------~v~~ee~~~~a~-----------~~~~~~~evSAktg~nI~elf~~L~ 232 (432)
+|+|||+||+||..++ .++.+++..++. ..++.+++|||+++.||+++|+++.
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 9999999999985322 267788888762 3457899999999999999999999
Q ss_pred HHHhhhc
Q psy3450 233 RRALQRN 239 (432)
Q Consensus 233 ~~i~~~~ 239 (432)
+.+++.+
T Consensus 349 ~~i~~~~ 355 (362)
T 1zcb_A 349 DTILHDN 355 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.64 E-value=9.5e-17 Score=167.05 Aligned_cols=170 Identities=13% Similarity=0.140 Sum_probs=93.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc-CCCCcccc---------cCCC------CcCccccCCCccccccceeEEEEEECC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL-ESRFPRFW---------LDGS------SESPFCSGSGKYDDMLAYKTTTILLDG 121 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~-~~~~~~~~---------~~~~------~~~~~~~~ig~~~~tid~~~~~i~i~~ 121 (432)
...++|+++|..++|||||+++|.. .+.+.... ..+. ..............|++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999732 22221100 0000 000000000001122333333444454
Q ss_pred eEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC---CChhhHHHHHHHHHhhC-CCCc-EEEEEECccCCCCc-
Q psy3450 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK---WSFDGIDRWLKEVEEHA-PGVP-KVLVGNRLHLAFNR- 195 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~~l~~~l~~i~~~~-~~iP-iILVgNK~DL~~~r- 195 (432)
..+.||||||+++|......+++.+|++|||+|+++. .+|+....|.+.+.... .++| +|||+||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 5689999999999988888889999999999999986 35543323333322211 3577 99999999995311
Q ss_pred -----ccCHHHHHHHHHhc-------CCcEEEEcCCCCCCHHHHHH
Q psy3450 196 -----TVTTREAEMYAIKN-------QMAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 196 -----~v~~ee~~~~a~~~-------~~~~~evSAktg~nI~elf~ 229 (432)
+...+++..+++.. +++++++||++|.|++++|+
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 11233566666665 35699999999999988763
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=5.6e-16 Score=173.39 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=110.8
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCC------CCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEe
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLES------RFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWD 130 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~------~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~D 130 (432)
....+||+++|.+++|||||+++|.... .+.......... .....| .|++.. .+.++.....+.|||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~--~ErerG---ITIdva--~v~f~~~~~kI~IID 365 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAP--EEKARG---ITINTS--HVEYDTPTRHYAHVD 365 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC--------------------------CCS--CEEEECSSCEEEEEE
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhcccccccccccccccccc--ccccCc---eeEEEE--EEEEcCCCEEEEEEE
Confidence 3457899999999999999999983310 010000000000 001112 112222 223444456789999
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCCCccc---CHHHHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAFNRTV---TTREAEMYA 206 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~~r~v---~~ee~~~~a 206 (432)
|||+++|......+++.+|++|+|+|+++.... ...+|+..+... ++| +|||+||+|+.++.+. ..+++.+++
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 999999988888889999999999999987544 345566665544 478 7899999999753221 234566777
Q ss_pred HhcC-----CcEEEEcCCCC--------CCHHHHHHHHHHHH
Q psy3450 207 IKNQ-----MAFFEVSPLCD--------FNIRESFTELSRRA 235 (432)
Q Consensus 207 ~~~~-----~~~~evSAktg--------~nI~elf~~L~~~i 235 (432)
++.+ ++++++||++| .||+++++.|.+.+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 7665 58999999999 45888888887655
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.2e-16 Score=169.32 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=101.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccc------------cCCCC---------cCccccCCCccccccceeEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFW------------LDGSS---------ESPFCSGSGKYDDMLAYKTTT 116 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~------------~~~~~---------~~~~~~~ig~~~~tid~~~~~ 116 (432)
...+||+++|.+|+|||||+++|.......... -.+.+ ......++ |++.....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~Gi-----Tid~~~~~ 239 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV-----TVSICTSH 239 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTT-----CCSCSCCE
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCe-----eEeeeeEE
Confidence 456899999999999999999983221110000 00000 00001111 23333333
Q ss_pred EEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCC---CChh---hHHHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK---WSFD---GIDRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 117 i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~---~Sf~---~l~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
+..+ ..++.||||||+++|......+++.+|++|+|+|+++. .+|. ...+.+..+.. ....|+|||+||+|
T Consensus 240 ~~~~--~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiD 316 (611)
T 3izq_1 240 FSTH--RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMD 316 (611)
T ss_dssp EECS--SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTT
T ss_pred EecC--CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEeccc
Confidence 3333 45789999999999998888999999999999999873 1221 11222222222 22245999999999
Q ss_pred CCCCcccCHH----HHHHHHHhcC-----CcEEEEcCCCCCCHHHHH
Q psy3450 191 LAFNRTVTTR----EAEMYAIKNQ-----MAFFEVSPLCDFNIRESF 228 (432)
Q Consensus 191 L~~~r~v~~e----e~~~~a~~~~-----~~~~evSAktg~nI~elf 228 (432)
+.+.++...+ ++..++...+ ++++++||++|.||+++.
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9753333222 3334444443 589999999999998773
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.61 E-value=1.7e-15 Score=161.73 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=101.7
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcccccccee---E----EEEEECCeEEEEEEEeCC
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK---T----TTILLDGKRVKLQLWDTS 132 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~---~----~~i~i~~~~v~l~i~Dt~ 132 (432)
..+|+++|.+++|||||+++|. +..+... .. ...++.+|.+....+.. . ....++.....+.|||||
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~-~~~v~~~-e~----ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTP 78 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIR-GSAVASR-EA----GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTP 78 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH-HHHHSCC---------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCC
T ss_pred CcEEEEECCCCCcHHHHHHHHh-cccCccc-cC----CceecccCeEEEeechhhhhccccccccccccccCCEEEEECC
Confidence 4689999999999999999983 2222110 00 01111222000000000 0 000000111258999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCC---CCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC-----------
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITN---KWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT----------- 198 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~---~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~----------- 198 (432)
|++.|..++..+++.+|++|+|||+++ +.+++.+. .+.. .++|+++|+||+|+.......
T Consensus 79 Ghe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 79 GHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp TTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHH
Confidence 999999999999999999999999998 44444332 2332 468999999999996422110
Q ss_pred --H---H-------HHHHHHHhcC---------------CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 199 --T---R-------EAEMYAIKNQ---------------MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 199 --~---e-------e~~~~a~~~~---------------~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
. + +......+.+ ++++++||++|.||++++++|...+..
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 0 1111111111 379999999999999999999987643
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.59 E-value=5.1e-16 Score=161.14 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=102.6
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcC-CCCcccc-----------cCCCC------c---CccccCCCccccccceeEEEE
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW-----------LDGSS------E---SPFCSGSGKYDDMLAYKTTTI 117 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~-----------~~~~~------~---~~~~~~ig~~~~tid~~~~~i 117 (432)
..++|+++|.+++|||||+++|... ..+.... -.+.+ + .....+ .|++.....+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G-----iTi~~~~~~~ 80 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG-----ITIDIALWKF 80 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTT-----CCCSCSCEEE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcC-----cEEEEEEEEE
Confidence 4689999999999999999998432 1221100 00000 0 000011 1233333333
Q ss_pred EECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCC---Chh---hHHHHHHHHHhhCCCCc-EEEEEECcc
Q psy3450 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKW---SFD---GIDRWLKEVEEHAPGVP-KVLVGNRLH 190 (432)
Q Consensus 118 ~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~---Sf~---~l~~~l~~i~~~~~~iP-iILVgNK~D 190 (432)
.. ...++.||||||+++|......+++.+|++|||+|+++.. +|+ ...+++..+.. .++| +|+|+||+|
T Consensus 81 ~~--~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~D 156 (458)
T 1f60_A 81 ET--PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMD 156 (458)
T ss_dssp EC--SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGG
T ss_pred ec--CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccc
Confidence 33 3467899999999999888888999999999999998752 332 22333333333 2465 999999999
Q ss_pred CCCCcc----cCHHHHHHHHHhcC-----CcEEEEcCCCCCCHHHH
Q psy3450 191 LAFNRT----VTTREAEMYAIKNQ-----MAFFEVSPLCDFNIRES 227 (432)
Q Consensus 191 L~~~r~----v~~ee~~~~a~~~~-----~~~~evSAktg~nI~el 227 (432)
+.+..+ ...+++..+++.++ ++++++||++|.|++++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 963111 12344566666665 68999999999999754
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.59 E-value=1.2e-15 Score=149.61 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=72.0
Q ss_pred EEEEEEeCCCCcc-------------cchhhhhcccCceEEEEEEeCCCCCCh-hhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 124 VKLQLWDTSGQGR-------------FCTIIRSYSRGAQGILLVYDITNKWSF-DGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 124 v~l~i~Dt~G~e~-------------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf-~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
.++.||||||... +......+++++|++|+|+|.++..-. .+...++..+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5689999999753 445566788999999999998543311 221233333332 368999999999
Q ss_pred cCCCCcccCHHHHHHHHHhcCCcEEEEcCCC------CCCHHHHHHHHHHHHh
Q psy3450 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLC------DFNIRESFTELSRRAL 236 (432)
Q Consensus 190 DL~~~r~v~~ee~~~~a~~~~~~~~evSAkt------g~nI~elf~~L~~~i~ 236 (432)
|+........+.+......++..|+++|+.+ +.|++++++.+.+.+.
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9976544223322211111225677777664 6889999999888773
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.59 E-value=1.2e-16 Score=167.13 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=100.6
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
..+|+++|..++|||||+++|. ...+..... .++. .+.....+..++ ..+.||||||++.|..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~-~~~v~~~e~---------~GIT-----~~i~~~~v~~~~--~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIR-STKVASGEA---------GGIT-----QHIGAYHVETEN--GMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHH-HHHHSBTTB---------CCCC-----CCSSCCCCCTTS--SCCCEECCCTTTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHH-cCCCccccC---------CCee-----EeEEEEEEEECC--EEEEEEECCCcHHHHH
Confidence 4689999999999999999973 222221100 1110 111111122334 3579999999999999
Q ss_pred hhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC--cccCHH--HHHHHHHhcC--CcE
Q psy3450 140 IIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTTR--EAEMYAIKNQ--MAF 213 (432)
Q Consensus 140 l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~--r~v~~e--e~~~~a~~~~--~~~ 213 (432)
++..++..+|++|||+|+++....+... ++..+.. .++|+++|+||+|+... +.+..+ +...+++.++ +++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e-~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIE-AIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHH-HHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHH-HHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 9999999999999999998853322222 2233332 35899999999999642 111111 0001122233 689
Q ss_pred EEEcCCCCCCHHHHHHHHHH
Q psy3450 214 FEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 214 ~evSAktg~nI~elf~~L~~ 233 (432)
+++||++|.|++++|++|..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 99999999999999999864
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.57 E-value=2.9e-15 Score=150.49 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=81.8
Q ss_pred EEEEEEeCCCCccc-------------chhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC-CCCcEEEEEECc
Q psy3450 124 VKLQLWDTSGQGRF-------------CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGVPKVLVGNRL 189 (432)
Q Consensus 124 v~l~i~Dt~G~e~~-------------~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~-~~iPiILVgNK~ 189 (432)
..+.+|||||..++ ..+...|++++|++|+|+|.++.+... ..|+..+.... .+.|+|+|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 46899999998876 556678899999999999987654333 34555555544 367999999999
Q ss_pred cCCCCcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 190 DL~~~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
|+.+++....+.++.++..++.+|+++|++++.++++.+..+...
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 997766655555555555567899999999999998877665443
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.57 E-value=1.2e-15 Score=163.03 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=83.0
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcCC-CCcc--------------------cccCCCCcCccccCCCccccccceeEE
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLES-RFPR--------------------FWLDGSSESPFCSGSGKYDDMLAYKTT 115 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~~-~~~~--------------------~~~~~~~~~~~~~~ig~~~~tid~~~~ 115 (432)
....++|+++|.+++|||||+++|+... .+.. .+..........++ .|++....
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~G-----iTid~~~~ 248 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG-----VTMDVAST 248 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCC-----eeEEeeEE
Confidence 3457899999999999999999983211 0000 00000000001111 22344434
Q ss_pred EEEECCeEEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCC---Ch--h-hHHHHHHHHHhhCCCCc-EEEEEEC
Q psy3450 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKW---SF--D-GIDRWLKEVEEHAPGVP-KVLVGNR 188 (432)
Q Consensus 116 ~i~i~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~---Sf--~-~l~~~l~~i~~~~~~iP-iILVgNK 188 (432)
.+..+ ...+.||||||+++|......+++.+|++|||+|+++.. .+ . ...+.+..+... ++| +|||+||
T Consensus 249 ~~~~~--~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNK 324 (592)
T 3mca_A 249 TFESD--KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNK 324 (592)
T ss_dssp ------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEEC
T ss_pred EEEeC--CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEec
Confidence 44343 367899999999999888888899999999999998753 22 1 112223333332 355 9999999
Q ss_pred ccCCCCccc----CHHHHHHHH-HhcCC-----cEEEEcCCCCCCHH
Q psy3450 189 LHLAFNRTV----TTREAEMYA-IKNQM-----AFFEVSPLCDFNIR 225 (432)
Q Consensus 189 ~DL~~~r~v----~~ee~~~~a-~~~~~-----~~~evSAktg~nI~ 225 (432)
+|+.+.... ..+++..+. +..++ +++++||++|.||+
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 999642111 123344444 44454 79999999999998
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=5.9e-15 Score=160.48 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=80.9
Q ss_pred EEEEEeCCCCcc---cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHH-
Q psy3450 125 KLQLWDTSGQGR---FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTR- 200 (432)
Q Consensus 125 ~l~i~Dt~G~e~---~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~e- 200 (432)
.+.||||||... .......+++++|++|+|+|+++..+..+...|...+... +.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 489999999754 3445667889999999999999998888877776555432 5789999999998644322211
Q ss_pred ---------HHHH-----HHHh--------cCCcEEEEcCC--------------CCCCHHHHHHHHHHHHhh
Q psy3450 201 ---------EAEM-----YAIK--------NQMAFFEVSPL--------------CDFNIRESFTELSRRALQ 237 (432)
Q Consensus 201 ---------e~~~-----~a~~--------~~~~~~evSAk--------------tg~nI~elf~~L~~~i~~ 237 (432)
.... +... ...++++|||+ ++.|++++++.+.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 1111 12379999999 999999999999887754
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=4.9e-16 Score=158.43 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=46.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEE---------------EEECC-eEE
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT---------------ILLDG-KRV 124 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~---------------i~i~~-~~v 124 (432)
+||+++|.+|||||||+|+|.... .... ..+..+ ..+..| +.+.... ..+++ ..+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~-~~p~tT--~~~~~g-----~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 71 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIA-NYPFTT--IEANVG-----VTYAITDHPCKELGCSPNPQNYEYRNGLALI 71 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------CCEE-----EEEEEEECSCSSSCCSCCCSSSCEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Cccc-CCCCcc--cCCceE-----EEeeccCCchHHhhhhcccccccccCCcceE
Confidence 589999999999999999983322 1100 000000 001111 0000000 11233 257
Q ss_pred EEEEEeCCCCcc----cchhhh---hcccCceEEEEEEeCCCC
Q psy3450 125 KLQLWDTSGQGR----FCTIIR---SYSRGAQGILLVYDITNK 160 (432)
Q Consensus 125 ~l~i~Dt~G~e~----~~~l~~---~~~~~ad~iIlV~Dvt~~ 160 (432)
+++||||||+.. ...+.+ .+++++|++++|+|+++.
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 899999999854 333444 346899999999999876
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=3.1e-14 Score=145.77 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=110.4
Q ss_pred EEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcc----c
Q psy3450 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGR----F 137 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~----~ 137 (432)
.|+|+|++|+|||||++++ .+.... .. +...+++......+.+++ ...+.+||++|..+ +
T Consensus 159 ~VgLVG~~gAGKSTLL~~L-sg~~~~---i~-----------~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAM-TRAHPK---IA-----------PYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEG 222 (416)
T ss_dssp SEEEECCGGGCHHHHHHHH-CSSCCE---EC-----------CCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGS
T ss_pred EEEEECCCCCcHHHHHHHH-HcCCcc---cc-----------CcccceecceeeEEEecC-cceEEEEeccccccchhhh
Confidence 4789999999999999997 222110 00 000112233333444444 24579999999743 2
Q ss_pred chhhhhc---ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCHHHHHHHHHhcCC
Q psy3450 138 CTIIRSY---SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQM 211 (432)
Q Consensus 138 ~~l~~~~---~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~~ 211 (432)
..+...+ ++.++.+|+++|++ ...+.++..|..++.... .+.|.+||+||+|+... ...+++.+.++..++
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~ 299 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGL 299 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTS
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCC
Confidence 2222223 35799999999998 667888888888776654 25799999999998643 233445555666688
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHhhhc
Q psy3450 212 AFFEVSPLCDFNIRESFTELSRRALQRN 239 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~~~i~~~~ 239 (432)
+++++||+++.|+++++++|.+.+.+..
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999986543
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=2.7e-14 Score=137.07 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=85.7
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFC 138 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~ 138 (432)
..+||+++|.+|+|||||+|+|+. ..+.. ...+ . .++.......+..++. .+.||||||++++.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~-~~~~~-------~~~~---~---~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG-EQVVR-------VSPF---Q---AEGLRPVMVSRTMGGF--TINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT-SCCSC-------CCSS---C---C-CCCCEEEEEEETTE--EEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC-CCCcc-------cCCC---C---CcceeeEEEEEEECCe--eEEEEECCCCCCcc
Confidence 468999999999999999999833 22210 0000 0 1123444555566664 68999999998876
Q ss_pred hhhhhccc---------CceEEEEEEeCCCCCChhhH-HHHHHHHHhhC-C--CCcEEEEEECccCCCCcccCHH
Q psy3450 139 TIIRSYSR---------GAQGILLVYDITNKWSFDGI-DRWLKEVEEHA-P--GVPKVLVGNRLHLAFNRTVTTR 200 (432)
Q Consensus 139 ~l~~~~~~---------~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~-~--~iPiILVgNK~DL~~~r~v~~e 200 (432)
.....+++ ++|++|+|+|+++.. +... ..|+..+.... . ..|+++|+||+|+...+....+
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 65544443 789999999998765 5544 57888877654 2 2499999999999654444444
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=152.93 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=88.7
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
-.+..++|+|+|++|||||||++.| .+..++.....+.. .....+++ .+.....+..++....+.+|||+|..
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L-~g~~~~~~~~~~~~-~~~~~t~~-----~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSL-FLTDLYSPEYPGPS-HRIKKTVQ-----VEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHH-TTCCCCCCCCCSCC------CCE-----EEEEECC------CEEEEEEECC---
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHH-hCCCCCCCCCCCcc-cCCcccee-----eeeEEEEEecCCcccceeeeechhhh
Confidence 3456689999999999999999997 33333211010000 00001110 11111222234445689999999986
Q ss_pred ccc-------h------------------hhhhcccCceEEEEEEeCCCC-CChhhHH-HHHHHHHhhCCCCcEEEEEEC
Q psy3450 136 RFC-------T------------------IIRSYSRGAQGILLVYDITNK-WSFDGID-RWLKEVEEHAPGVPKVLVGNR 188 (432)
Q Consensus 136 ~~~-------~------------------l~~~~~~~ad~iIlV~Dvt~~-~Sf~~l~-~~l~~i~~~~~~iPiILVgNK 188 (432)
.+. . +...++.++++.+++|+.... .+++.+. .|+..+. .++|+|+|+||
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK 176 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAK 176 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEES
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEc
Confidence 531 1 123455677776666666543 4677764 6777664 36899999999
Q ss_pred ccCCCCcccCH--HHHHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 189 LHLAFNRTVTT--REAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 189 ~DL~~~r~v~~--ee~~~~a~~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
+|+...+++.. +++.+++..++++++++||+++.+++++|..+...+
T Consensus 177 ~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 177 ADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 99976665554 677788888899999999999999999888877654
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=2.1e-14 Score=155.46 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=82.6
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCc-c--cccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCC
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFP-R--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQ 134 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~-~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~ 134 (432)
+...+|+|+|+.|+|||||+++|....... . ...++.......+. .....+.+......+....+.++||||+|+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~--e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPE--AKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHH--HHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHH--HHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 345789999999999999999984211110 0 00000000000000 000011222233333333578899999999
Q ss_pred cccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 135 GRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 135 e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
++|......+++.+|++++|+|+++...... ..|+..+... ++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCchh
Confidence 9998888899999999999999987755443 4555555543 58999999999986
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=3.4e-14 Score=136.85 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
...+||+++|.+|+|||||+|+|+. ..+... ....+ ++.+.....+..++ ..+.||||||++++
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~-~~~~~~----------~~~~~---~t~~~~~~~~~~~~--~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG-ERVVSI----------SPFQS---EGPRPVMVSRSRAG--FTLNIIDTPGLIEG 100 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT-SCCSCC----------CSSSC---CCSSCEEEEEEETT--EEEEEEECCCSEET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC-CCcccc----------cCCCC---cceeeEEEEEeeCC--eEEEEEECCCCCCC
Confidence 3468999999999999999999843 222110 01111 11122233333444 67899999999776
Q ss_pred chhhh-------hc--ccCceEEEEEEeCCCCCChhhH-HHHHHHHHhhCC-C--CcEEEEEECccCCCCcccCHHH
Q psy3450 138 CTIIR-------SY--SRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAP-G--VPKVLVGNRLHLAFNRTVTTRE 201 (432)
Q Consensus 138 ~~l~~-------~~--~~~ad~iIlV~Dvt~~~Sf~~l-~~~l~~i~~~~~-~--iPiILVgNK~DL~~~r~v~~ee 201 (432)
..+.. .+ .+.+|++|+|+|++.. ++... ..|+..+.+... + .|+++|+||+|+...+....++
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 53322 12 3479999999999764 46554 578888876532 2 6999999999997655444443
No 187
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.52 E-value=7.1e-14 Score=151.91 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=85.3
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcC-CCCccc-ccCC-CCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRF-WLDG-SSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~-~~~~-~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+...+|+|+|.+|+|||||+++|... ..+... ..+. ...............|+......+..++ +.++||||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcC
Confidence 456789999999999999999998421 111000 0000 0000000000001122333344444554 6789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
+.+|...+..+++.+|++|+|+|+++..+++....|.. +.. .++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 99999989999999999999999999988887776654 333 3589999999999854
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=1.3e-13 Score=145.51 Aligned_cols=128 Identities=15% Similarity=0.129 Sum_probs=79.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccc--cCC----CCcCc---cccCCCccccccceeEEEEEECCeEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW--LDG----SSESP---FCSGSGKYDDMLAYKTTTILLDGKRVKLQ 127 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~--~~~----~~~~~---~~~~ig~~~~tid~~~~~i~i~~~~v~l~ 127 (432)
....+|+++|.+|+|||||+++|... ..+.... ... ..... .....| .++......+..++ +.+.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rG---iTi~~~~~~~~~~~--~~i~ 85 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRG---ISITTSVMQFPYHD--CLVN 85 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEETT--EEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCC---cceeeeEEEEEECC--eEEE
Confidence 35689999999999999999998432 1111000 000 00000 000111 12233333444444 6789
Q ss_pred EEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 128 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 128 i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
||||||+++|......+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred EEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 99999999998888889999999999999998653222 333333322 3689999999999854
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.49 E-value=4.1e-13 Score=145.99 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=85.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhhhcC-CCCcccc-c-CCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCC
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW-L-DGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSG 133 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~-~-~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G 133 (432)
.+...+|+|+|.+|+|||||+++|... ..+.... . ++.....+.+.......|+......+.+++ +.++||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 345789999999999999999998421 1111000 0 000000000000001122333344455554 6789999999
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
+.+|......+++.+|++|+|+|+++..+++....|.. +... ++|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 99998888899999999999999999888877766654 4433 589999999999854
No 190
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.46 E-value=6.7e-16 Score=143.72 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=48.2
Q ss_pred CcEEEEEECccCCCCcccCHHHHHHHHHhc--CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKN--QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 180 iPiILVgNK~DL~~~r~v~~ee~~~~a~~~--~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
.|.++|+||+|+.+++.+..+++.++++.+ +++++++||++|.|++++|++|.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 688999999999654446677777777764 5799999999999999999999987743
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.45 E-value=5.3e-14 Score=130.38 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+.+.+|||+|+-.... .+....+.+++|+|+++... ....+...+ +.|+++|+||+|+...+....+++.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF-----RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH-----HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh-----hcCCEEEEecccCCcchhhHHHHHH
Confidence 5679999999511110 11235788999999987642 222222221 3689999999998643334566676
Q ss_pred HHHHhc--CCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 204 MYAIKN--QMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 204 ~~a~~~--~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++++.. +++++++||++|.|++++|++|.+.+..
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 666654 4689999999999999999999988754
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.45 E-value=9.2e-13 Score=143.39 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=85.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcccc-cC-CCCcCccccCCCccccccceeEEEEEEC-----CeEEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPRFW-LD-GSSESPFCSGSGKYDDMLAYKTTTILLD-----GKRVKLQLW 129 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~~~-~~-~~~~~~~~~~ig~~~~tid~~~~~i~i~-----~~~v~l~i~ 129 (432)
+...+|+|+|..|+|||||+++|... +.+.... .+ +.......+.......|+......+.++ +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999998432 2221100 00 0000000000000011223333333333 345889999
Q ss_pred eCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 130 Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
||||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 999999998888899999999999999998876665555533 332 3589999999999853
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=1.5e-14 Score=144.95 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCc-------------ccchhhhhcccCceEEEE-EEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECc
Q psy3450 124 VKLQLWDTSGQG-------------RFCTIIRSYSRGAQGILL-VYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRL 189 (432)
Q Consensus 124 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~iIl-V~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~ 189 (432)
..+.||||||.. .+..+...|+++++.+|+ |.|.+....-.+...++..+.. .+.|+++|+||+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~ 207 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKL 207 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccc
Confidence 568999999963 344566677766655554 5565542221222233333322 468999999999
Q ss_pred cCCCCcccCHHHHHH--HHHhcC-CcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 190 HLAFNRTVTTREAEM--YAIKNQ-MAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 190 DL~~~r~v~~ee~~~--~a~~~~-~~~~evSAktg~nI~elf~~L~~ 233 (432)
|+.++.....+..+. +....+ .+++++||+++.|++++++.+.+
T Consensus 208 Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 208 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 997544322221111 000123 25788999999999999999976
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.40 E-value=7.2e-14 Score=148.05 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=54.1
Q ss_pred EEEEEeCCCCcc-----------cchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 125 KLQLWDTSGQGR-----------FCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 125 ~l~i~Dt~G~e~-----------~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
++.||||||... |......+++++|++|+|+|+++....+....|+..+... +.|+++|+||+|+..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence 589999999865 4456667889999999999999876667777787776543 479999999999864
No 195
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=1.1e-12 Score=128.83 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=82.7
Q ss_pred CcccchhhhhcccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC-HHHHHHHHHhcCC
Q psy3450 134 QGRFCTIIRSYSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT-TREAEMYAIKNQM 211 (432)
Q Consensus 134 ~e~~~~l~~~~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~-~ee~~~~a~~~~~ 211 (432)
++++..+.+.+++++|++|+|||++++. +++.+.+|+..+.. .++|++||+||+||.+++++. .++..++++..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6788888889999999999999999986 89989999987765 468999999999997644333 4556677777889
Q ss_pred cEEEEcCCCCCCHHHHHHHHH
Q psy3450 212 AFFEVSPLCDFNIRESFTELS 232 (432)
Q Consensus 212 ~~~evSAktg~nI~elf~~L~ 232 (432)
+++++||++|.|++++|+.+.
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHhhcc
Confidence 999999999999999998765
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=3.4e-12 Score=128.25 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=90.7
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe---------------EEE
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK---------------RVK 125 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~---------------~v~ 125 (432)
+||+++|.+|||||||+|++.... +....... .+ ++.....+.+++. ...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~-------tT-------i~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~ 67 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPF-------CT-------IEPNTGVVPMPDPRLDALAEIVKPERILPTT 67 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC-------CC-------CCCCSSEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC-------ce-------ECceEEEEecCCcccceeeeeecccceeeeE
Confidence 689999999999999999984332 21100000 01 1111112333332 156
Q ss_pred EEEEeCCCCcccc----hhhhh---cccCceEEEEEEeCCCC----------CChhhHHHHHHHH---------------
Q psy3450 126 LQLWDTSGQGRFC----TIIRS---YSRGAQGILLVYDITNK----------WSFDGIDRWLKEV--------------- 173 (432)
Q Consensus 126 l~i~Dt~G~e~~~----~l~~~---~~~~ad~iIlV~Dvt~~----------~Sf~~l~~~l~~i--------------- 173 (432)
+++|||||+.++. .+.+. +++++|++++|+|+++. +.++++..|..++
T Consensus 68 i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~ 147 (363)
T 1jal_A 68 MEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRL 147 (363)
T ss_dssp EEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHH
Confidence 8999999998763 33333 47899999999999862 3444443322222
Q ss_pred -------------------------Hh-------------------h--CCCCcEEEEEECccCCCCcccCHHHHHHHHH
Q psy3450 174 -------------------------EE-------------------H--APGVPKVLVGNRLHLAFNRTVTTREAEMYAI 207 (432)
Q Consensus 174 -------------------------~~-------------------~--~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~ 207 (432)
.+ . ....|+++|+||.|.........+.+.+++.
T Consensus 148 ~k~~k~g~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~ 227 (363)
T 1jal_A 148 QKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAA 227 (363)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHH
Confidence 10 0 0238999999999964322334566778888
Q ss_pred hcCCcEEEEcCCC
Q psy3450 208 KNQMAFFEVSPLC 220 (432)
Q Consensus 208 ~~~~~~~evSAkt 220 (432)
..+.+++++||+.
T Consensus 228 ~~~~~~i~~sA~~ 240 (363)
T 1jal_A 228 KEGAVVVPVCAAI 240 (363)
T ss_dssp HTTCEEEEECHHH
T ss_pred HcCCCEEEechHH
Confidence 8899999999874
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=1.9e-13 Score=137.06 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=70.6
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC--HHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT--TRE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~--~ee 201 (432)
+.+.||||+|... .....+..+|++|+|+|.+..+.++.+..++ .+.|+++|+||+|+....... .++
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~-------~~~p~ivVlNK~Dl~~~~~~~~~~~~ 241 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV-------LELADIVVVNKADGEHHKEARLAARE 241 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS-------GGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH-------hhcCCEEEEECCCCcChhHHHHHHHH
Confidence 5689999999543 2223458899999999987765554433211 235899999999985322211 111
Q ss_pred HHHHHH-------hcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 202 AEMYAI-------KNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 202 ~~~~a~-------~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
...... .++.+++++||++|.||++++++|.+.+..
T Consensus 242 l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 242 LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111 125789999999999999999999988754
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.33 E-value=5.2e-12 Score=140.03 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=86.7
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcC-ccccCCCccccccceeEEEEEE--------------CCe
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSES-PFCSGSGKYDDMLAYKTTTILL--------------DGK 122 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~-~~~~~ig~~~~tid~~~~~i~i--------------~~~ 122 (432)
+...||+|+|..|+|||||+++|+...........+.... ...+.......|+......+.+ ++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999843211110000000000 0000000000112222222222 445
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
.+.++||||||+.+|...+..+++.+|++|+|||+++..+++....|..... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 7889999999999999999999999999999999999999988776765433 358999999999985
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=5.9e-13 Score=144.90 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=94.8
Q ss_pred EEEEEeCCCCcc-------------cchhhhhcc-cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECcc
Q psy3450 125 KLQLWDTSGQGR-------------FCTIIRSYS-RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLH 190 (432)
Q Consensus 125 ~l~i~Dt~G~e~-------------~~~l~~~~~-~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~D 190 (432)
++.|+||||... ...+...|+ ..+|++++|+|+++...-.+...++..+.. .+.|+|+|.||+|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiD 228 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLD 228 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcc
Confidence 578999999643 122334454 578999999999876554443345555443 3589999999999
Q ss_pred CCCCcccCHHHHHHHHHh----cC-CcEEEEcCCCCCCHHHHHHHHHHH--HhhhcCCcccccccCCCCCCCcCCCCchh
Q psy3450 191 LAFNRTVTTREAEMYAIK----NQ-MAFFEVSPLCDFNIRESFTELSRR--ALQRNGMERLWRSNKVGRKPLINFESFTE 263 (432)
Q Consensus 191 L~~~r~v~~ee~~~~a~~----~~-~~~~evSAktg~nI~elf~~L~~~--i~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 263 (432)
+.++.....+ ... .+. .+ .+++.+||++|.|++++++.+.+. .+... |.+ +.+++
T Consensus 229 lv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~--------------P~y--d~ltD 290 (772)
T 3zvr_A 229 LMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSH--------------PSY--RHLAD 290 (772)
T ss_dssp SSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHC--------------TTT--GGGGG
T ss_pred cCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCC--------------cch--hhhhh
Confidence 9764433222 111 111 12 256789999999999999998874 22111 111 23344
Q ss_pred HHHHHHHhcccccccccCCCceeEEEEEEeeccccCCcccccccccccc
Q psy3450 264 LSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLL 312 (432)
Q Consensus 264 ~~~r~l~~~~l~r~~~~~~Gk~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 312 (432)
+..++. .++++|++++..+.+|+||
T Consensus 291 r~g~~~------------------------LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 291 RMGTPY------------------------LQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp GCSHHH------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHH------------------------HHHHHHHHHHHHHHhhCcc
Confidence 444444 6789999999999999999
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.32 E-value=7.4e-12 Score=118.96 Aligned_cols=111 Identities=10% Similarity=-0.099 Sum_probs=71.5
Q ss_pred EEEEEEeCCCCcccchhhh------hcccCceEEEEEEeCCCCCChhhHHHHHHHH-H-hhCCCCcEEEEEECccCCCCc
Q psy3450 124 VKLQLWDTSGQGRFCTIIR------SYSRGAQGILLVYDITNKWSFDGIDRWLKEV-E-EHAPGVPKVLVGNRLHLAFNR 195 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~------~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i-~-~~~~~iPiILVgNK~DL~~~r 195 (432)
+.+.||||+|+.++..... ..+.+ +++|+++|.....+..+........ . ....+.|+++|+||+|+...+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999976543322 24466 8999999987654443332211111 1 111358999999999986533
Q ss_pred ccCHHHHHH----------------------------HHHhcC--CcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 196 TVTTREAEM----------------------------YAIKNQ--MAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 196 ~v~~ee~~~----------------------------~a~~~~--~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++ +++.+ ++++++ .+++++||++|.|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21 11111 123333 489999999999999999999887743
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.26 E-value=8.8e-12 Score=125.65 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=96.2
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECC-------------------
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG------------------- 121 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~------------------- 121 (432)
++|+++|.+|||||||+|++.........+ . .+|++.....+.+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~----p-----------~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~ 66 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY----P-----------FATIDKNVGVVPLEDERLYALQRTFAKGERVPPV 66 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC----C-----------GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC----C-----------CceeccceeeEecChHHHHHHHHHhccccccccc
Confidence 579999999999999999983321100000 0 001111111122221
Q ss_pred eEEEEEEEeCCCCcccc----hhhh---hcccCceEEEEEEeCCCC----------CChhhHHHHHHHH-----------
Q psy3450 122 KRVKLQLWDTSGQGRFC----TIIR---SYSRGAQGILLVYDITNK----------WSFDGIDRWLKEV----------- 173 (432)
Q Consensus 122 ~~v~l~i~Dt~G~e~~~----~l~~---~~~~~ad~iIlV~Dvt~~----------~Sf~~l~~~l~~i----------- 173 (432)
....+++|||||+.++. .+.+ .+++.+|++++|+|+++. +.+.++..+..++
T Consensus 67 ~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~ 146 (368)
T 2dby_A 67 VPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERR 146 (368)
T ss_dssp ECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHH
Confidence 23568999999987653 2322 357899999999999862 2333332211111
Q ss_pred ----------------------------Hh-------------------h--CCCCcEEEEEECccCC--CC-cccCHHH
Q psy3450 174 ----------------------------EE-------------------H--APGVPKVLVGNRLHLA--FN-RTVTTRE 201 (432)
Q Consensus 174 ----------------------------~~-------------------~--~~~iPiILVgNK~DL~--~~-r~v~~ee 201 (432)
.. . ....|+++|+||.|.. +. +....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~ 226 (368)
T 2dby_A 147 LERLRKEARADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEA 226 (368)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHH
Confidence 00 0 0137999999999842 21 1344667
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCHHHHHHHHHH
Q psy3450 202 AEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233 (432)
Q Consensus 202 ~~~~a~~~~~~~~evSAktg~nI~elf~~L~~ 233 (432)
+.++++..+++++++||+.+.++.++++.-..
T Consensus 227 v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~ 258 (368)
T 2dby_A 227 VRRKALEEGAEVVVVSARLEAELAELSGEEAR 258 (368)
T ss_dssp HHHHHHHHTCEEEEECHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHcCCeEEEeechhHHHHHHhchHHHH
Confidence 78888888999999999988777777665433
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=9.8e-12 Score=124.47 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+.+.|+||+|.... .......+|++++|+|+++....+.+.. .+ -+.|.++|+||+|+.+.... .....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~-~~~~~ 235 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPA-RRIQA 235 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHH-HHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhH-HHHHH
Confidence 46799999996321 2334678999999999987643322221 11 23588999999998531110 01111
Q ss_pred HHHH----------hcCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 204 MYAI----------KNQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 204 ~~a~----------~~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+.. .++.+++.+||++|.|+++++++|.+.+
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 2211 1245789999999999999999998876
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.15 E-value=5.8e-12 Score=125.68 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCH--HH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTT--RE 201 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~--ee 201 (432)
+.+.||||+|...... ...+.+|++|+|+|.++.+.++.+... .. +.|.++|+||+|+........ ++
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCCCChHHHHHHHHH
Confidence 5689999999754432 245899999999998765443322211 11 258899999999864322111 12
Q ss_pred HHHHHHhc-------CCcEEEEcCCCCCCHHHHHHHHHHHHh
Q psy3450 202 AEMYAIKN-------QMAFFEVSPLCDFNIRESFTELSRRAL 236 (432)
Q Consensus 202 ~~~~a~~~-------~~~~~evSAktg~nI~elf~~L~~~i~ 236 (432)
........ ..+++++||++|.|++++++.|.+.+.
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22222222 357899999999999999999998764
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.07 E-value=1.1e-09 Score=115.90 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=82.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcC-CCCcc-------------cccCCCCcCccccCCCccccccceeEEEEEECCeE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLE-SRFPR-------------FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR 123 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~-~~~~~-------------~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~ 123 (432)
...=+|+|+|..++|||||..+|+.. +.+.. .......+..... ||......+.+++
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGI-------TI~s~~~~~~~~~-- 99 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGI-------SVTTSVMQFPYRD-- 99 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------------CTTTEEEEEETT--
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCC-------cEeeceEEEEECC--
Confidence 34568999999999999999998321 11100 0000011111112 2344455566666
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
+.++|+||||+.+|..-....++-+|++|+|+|+...-.-+...-|.. ..++ ++|++++.||+|..
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~--~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR--ATPVMTFVNKMDRE 165 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh--CCceEEEEecccch
Confidence 668999999999999888899999999999999998765555555643 3433 58999999999974
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.5e-09 Score=106.81 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=96.0
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCccc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRF 137 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~ 137 (432)
.-..+|.+||.||||||||+|+|......... ...+|++.....+.+++. +++|+||||..+-
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~---------------~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAE---------------YEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDG 132 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGG---------------TCSSCCCEEEEEEEETTE--EEEEEECGGGCCC
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccC---------------CCCceeeeeeEEEEeCCc--EEEEEeCCCccCC
Confidence 34568999999999999999998322211111 112345666667778774 5689999996432
Q ss_pred ----chhhh---hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCC--------CcccCH
Q psy3450 138 ----CTIIR---SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAF--------NRTVTT 199 (432)
Q Consensus 138 ----~~l~~---~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~--------~r~v~~ 199 (432)
..+.+ ..++.+|++++|+|++++ ..+...+..++.... .+.|.+++.||.|... ......
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~ 210 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGN 210 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCH
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccH
Confidence 11222 345889999999999886 334444444454433 4578899999999632 233556
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCCCHHHHHH
Q psy3450 200 REAEMYAIKNQMAFFEVSPLCDFNIRESFT 229 (432)
Q Consensus 200 ee~~~~a~~~~~~~~evSAktg~nI~elf~ 229 (432)
++...+...+.+.--++--..+...+++.+
T Consensus 211 eeik~il~~~~lt~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 211 DEIRAVMSEYRINSAEIAFRCDATVDDLID 240 (376)
T ss_dssp HHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence 666666666655333333334556666554
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.02 E-value=3.9e-10 Score=112.31 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHH
Q psy3450 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAE 203 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~ 203 (432)
+.+.|+||+|...-. ......+|.+++|+|....+..+.+..++ .+ .|.++|.||+|+...........+
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~~----~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---FE----LADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---HH----HCSEEEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---hc----cccEEEEEchhccCchhHHHHHHH
Confidence 567999999975321 12347899999999986543222121111 11 356777899997432222222223
Q ss_pred HHHHh----------cCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 204 MYAIK----------NQMAFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 204 ~~a~~----------~~~~~~evSAktg~nI~elf~~L~~~i 235 (432)
++... +..+++.+||+++.|++++++.|.+..
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33221 135789999999999999999998865
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.95 E-value=6e-10 Score=103.12 Aligned_cols=104 Identities=5% Similarity=-0.018 Sum_probs=70.6
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHH----Hhh--CCCCcEEEEEECc-cCCCCcccCHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV----EEH--APGVPKVLVGNRL-HLAFNRTVTTREAE 203 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i----~~~--~~~iPiILVgNK~-DL~~~r~v~~ee~~ 203 (432)
.+||+.++.+|+.||+++|++|+|+|.+|.+-++ .+.-+.++ .+. ..++|++|.+||. |+. ...+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 4589999999999999999999999999987654 33333222 222 1578999999995 674 445555544
Q ss_pred HHHH----hcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 204 MYAI----KNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 204 ~~a~----~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
+... ...+.+..|||++|.|+.|-++||.+.+..
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3321 134578999999999999999999987744
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.90 E-value=9.9e-10 Score=118.31 Aligned_cols=122 Identities=14% Similarity=0.220 Sum_probs=78.1
Q ss_pred EEEEEeCcccchhHHHHHhhhc-CCCCcccc--cCCCCcCc-----cccCCCccccccceeEEEEEECCeEEEEEEEeCC
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYL-ESRFPRFW--LDGSSESP-----FCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTS 132 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~-~~~~~~~~--~~~~~~~~-----~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~ 132 (432)
-+|.|+|..++|||||..+|+. .+.+.... ..+..... ...++ |+......+.++ .+.++|+|||
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGI-----TI~s~~~~~~~~--~~~iNlIDTP 75 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGI-----TIQTGITSFQWE--NTKVNIIDTP 75 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSS-----CSSCCCCCCBCS--SCBCCCEECC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCC-----cEEeeeEEEEEC--CEEEEEEECC
Confidence 3689999999999999999832 22221100 00000000 00111 122222223333 3668999999
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
|+.+|.......++-+|++|+|+|+...-.-+...-|.. +.+. ++|.|++.||+|..
T Consensus 76 GH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~--~lp~i~~INKmDr~ 132 (638)
T 3j25_A 76 GHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM--GIPTIFFINKIDQN 132 (638)
T ss_dssp CSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH--TCSCEECCEECCSS
T ss_pred CcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc--CCCeEEEEeccccc
Confidence 999999888889999999999999987654444444443 3433 48999999999974
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.79 E-value=3.6e-08 Score=107.36 Aligned_cols=132 Identities=15% Similarity=0.212 Sum_probs=81.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhcCC-CCcc--cccCCCCcCccccCCCccccccceeEEEEEECC-----eEEEEEEE
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYLES-RFPR--FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG-----KRVKLQLW 129 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~~~-~~~~--~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~-----~~v~l~i~ 129 (432)
+..-+|+|+|..+.|||||..+|+... .... .-.++.......+..-...-|+......+.+.+ +.+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 455689999999999999999983211 1000 000000000000000000112233344444432 36889999
Q ss_pred eCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC
Q psy3450 130 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA 192 (432)
Q Consensus 130 Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~ 192 (432)
||||+-+|..-....++-+|++|+|+|+...-.-+...-|....+. ++|.+++.||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEcccccc
Confidence 9999999998888899999999999999887655554555544443 48999999999974
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.79 E-value=6.9e-09 Score=104.49 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH----HHHh
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM----YAIK 208 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~----~a~~ 208 (432)
..++|..++..+++.++++|+|+|++++. ..|..++.+...+.|+++|+||+||.+. ....++..+ ++++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998742 5677777776668999999999999653 333444443 3566
Q ss_pred cCC---cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 209 NQM---AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 209 ~~~---~~~evSAktg~nI~elf~~L~~~i 235 (432)
.++ +++++||++|.|++++++.+.+..
T Consensus 129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 777 799999999999999999997654
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.77 E-value=6.3e-09 Score=100.71 Aligned_cols=106 Identities=6% Similarity=0.002 Sum_probs=75.1
Q ss_pred CCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHH---HHHHHhh--CCCCcEEEEEEC-ccCCCCcccCHHHHHH
Q psy3450 131 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW---LKEVEEH--APGVPKVLVGNR-LHLAFNRTVTTREAEM 204 (432)
Q Consensus 131 t~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~---l~~i~~~--~~~iPiILVgNK-~DL~~~r~v~~ee~~~ 204 (432)
.+||+.++.+|+.|++++|++|+|+|.+|.+.++.-.+. ...+.+. ..++|++|.+|| .|+. ...+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 468999999999999999999999999998866522221 1222221 257999999997 5874 3455555443
Q ss_pred HHH----hcCCcEEEEcCCCCCCHHHHHHHHHHHHhhh
Q psy3450 205 YAI----KNQMAFFEVSPLCDFNIRESFTELSRRALQR 238 (432)
Q Consensus 205 ~a~----~~~~~~~evSAktg~nI~elf~~L~~~i~~~ 238 (432)
... .....+..|||++|+|+.|-++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 321 1335689999999999999999999988443
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=8.9e-08 Score=97.06 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=54.4
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeE---------------
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR--------------- 123 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~--------------- 123 (432)
...+|.++|.+|||||||+|.+.. ...... .. ...++++.....+.+++..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg-~~~a~~--------~~-----~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~ 84 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK-SVLGNP--------AN-----YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 84 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH-STTTST--------TC-----CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCcccc--------cC-----CCceeecceeeeeeeCCcchhhhhhhcccccccC
Confidence 346899999999999999999833 221000 00 0011223444445555421
Q ss_pred EEEEEEeCCCCcc-------cchhhhhcccCceEEEEEEeCCC
Q psy3450 124 VKLQLWDTSGQGR-------FCTIIRSYSRGAQGILLVYDITN 159 (432)
Q Consensus 124 v~l~i~Dt~G~e~-------~~~l~~~~~~~ad~iIlV~Dvt~ 159 (432)
..+.+||++|... +.......++.+|++++|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3579999999543 22233445689999999999864
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.70 E-value=7.3e-09 Score=105.00 Aligned_cols=92 Identities=16% Similarity=0.068 Sum_probs=49.5
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCe---------------E
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGK---------------R 123 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~---------------~ 123 (432)
..++|+++|.+|||||||+|++. +..+... . ...+|++.....+.+++. .
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Lt-g~~~~~~---------~-----~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~ 85 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLT-NSQASAE---------N-----FPFCTIDPNESRVPVPDERFDFLCQYHKPASKIP 85 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHH-C---------------------------CCSEEEEECCCHHHHHHHHHHCCSEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-CCCcccc---------C-----CCccccCceeEEEEECCccceeeccccCcccccc
Confidence 34789999999999999999982 2222100 0 001122333344444432 2
Q ss_pred EEEEEEeCCCCcccch-------hhhhcccCceEEEEEEeCCCCCChhh
Q psy3450 124 VKLQLWDTSGQGRFCT-------IIRSYSRGAQGILLVYDITNKWSFDG 165 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~-------l~~~~~~~ad~iIlV~Dvt~~~Sf~~ 165 (432)
..+++|||||+.++.. .+..+++++|++++|+|+++.+++.+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 3589999999876543 34467899999999999987666544
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.66 E-value=1.6e-08 Score=101.83 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=75.0
Q ss_pred CCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHH----HHHh
Q psy3450 133 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEM----YAIK 208 (432)
Q Consensus 133 G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~----~a~~ 208 (432)
.++.|..++..++++++++|+|+|++++.+ .|..++.+...+.|+++|+||+||.+. ....+...+ ++++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHH
Confidence 588999999999999999999999998763 455555555567899999999999653 233344433 3556
Q ss_pred cCC---cEEEEcCCCCCCHHHHHHHHHHHH
Q psy3450 209 NQM---AFFEVSPLCDFNIRESFTELSRRA 235 (432)
Q Consensus 209 ~~~---~~~evSAktg~nI~elf~~L~~~i 235 (432)
.+. .++.+||++|.|++++++.+.+..
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 676 789999999999999999987765
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.37 E-value=6.6e-07 Score=86.73 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=70.3
Q ss_pred eCCCCc-ccchhhhhcccCceEEEEEEeCCCCCChhh--HHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHH
Q psy3450 130 DTSGQG-RFCTIIRSYSRGAQGILLVYDITNKWSFDG--IDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206 (432)
Q Consensus 130 Dt~G~e-~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~--l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a 206 (432)
+.||+. +........++.+|++++|+|+.++.+..+ +.+|+ .+.|+++|.||+||.+... .+...++.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~--~~~~~~~~ 75 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV--TQQWKEHF 75 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH--HHHHHHHH
Confidence 456764 344445567899999999999999987753 44443 4689999999999965211 12233444
Q ss_pred HhcCCcEEEEcCCCCCCHHHHHHHHHHHHhh
Q psy3450 207 IKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237 (432)
Q Consensus 207 ~~~~~~~~evSAktg~nI~elf~~L~~~i~~ 237 (432)
++.+++++.+||+++.|++++++.+.+.+..
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 5567899999999999999999988877653
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.27 E-value=1e-06 Score=92.00 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCcccc-hhhhh---c--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEECccCCCCcc
Q psy3450 124 VKLQLWDTSGQGRFC-TIIRS---Y--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGNRLHLAFNRT 196 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~-~l~~~---~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgNK~DL~~~r~ 196 (432)
+.+.|+||+|..... .+... . ...+|.+++|+|.+.... . ......+.+. +|+ ++|.||+|......
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~-~~~a~~~~~~---~~i~gvVlNK~D~~~~~g 257 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--C-EAQAKAFKDK---VDVASVIVTKLDGHAKGG 257 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--H-HHHHHHHHHH---HCCCCEEEECTTSCCCCT
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--H-HHHHHHHHhh---cCceEEEEeCCccccchH
Confidence 568999999975322 11111 1 126899999999987543 2 2223333332 575 89999999853221
Q ss_pred cCHHHHHHHHHhcCCcE------------------EEEcCCCCCC-HHHHHHHHHHH
Q psy3450 197 VTTREAEMYAIKNQMAF------------------FEVSPLCDFN-IRESFTELSRR 234 (432)
Q Consensus 197 v~~ee~~~~a~~~~~~~------------------~evSAktg~n-I~elf~~L~~~ 234 (432)
.+.......+.|+ +.+|+..|.| ++++++++.+.
T Consensus 258 ----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 ----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1222333334332 3479999999 99998888765
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=8.3e-06 Score=83.32 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=69.6
Q ss_pred cccceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCc
Q psy3450 56 QYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQG 135 (432)
Q Consensus 56 ~~~~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e 135 (432)
.....++++|+|++|+|||||+|.++.. .+. +.......+ + .+...........+-...+.++|++|..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~-~l~-----g~~~~~~~~--~---~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT-KFE-----GEPATHTQP--G---VQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS-CC------------CCS--S---CEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc-ccc-----CCcCCCCCc--c---ceEeeEEEEeecCccccccchhhhhhhh
Confidence 3445678999999999999999997332 211 100000001 1 0011111111112223468999998854
Q ss_pred ccc--------------hhh----hhc---------ccCce---EEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEE
Q psy3450 136 RFC--------------TII----RSY---------SRGAQ---GILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLV 185 (432)
Q Consensus 136 ~~~--------------~l~----~~~---------~~~ad---~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILV 185 (432)
... ..+ ..+ ..+++ +++|+.|....-+-.+ ..+ ++....++|+|+|
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-iei---lk~L~~~~~vI~V 182 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVT---MKKLDSKVNIIPI 182 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHH---HHHTCSCSEEEEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHH---HHHHhhCCCEEEE
Confidence 210 011 111 12222 4666667654433322 122 2333357899999
Q ss_pred EECccCCCCcccC--HHHHHHHHHhcCCcEEEEcCC
Q psy3450 186 GNRLHLAFNRTVT--TREAEMYAIKNQMAFFEVSPL 219 (432)
Q Consensus 186 gNK~DL~~~r~v~--~ee~~~~a~~~~~~~~evSAk 219 (432)
.||+|.....++. .+.+.+.....|++++.+|..
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999975432211 111222223457788888853
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.99 E-value=1.4e-06 Score=87.50 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=77.0
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.+|+++|.+|||||||+|+++...... .... ......| +|.+ ...+.++.. +.++||||......+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~----~~~~--~~~~~~g---tT~~--~~~~~~~~~---~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK----GNVI--TTSYFPG---TTLD--MIEIPLESG---ATLYDTPGIINHHQM 228 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT----TCCC--EEEECTT---SSCE--EEEEECSTT---CEEEECCSCCCCSSG
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC----ccce--eecCCCC---eEEe--eEEEEeCCC---eEEEeCCCcCcHHHH
Confidence 479999999999999999984431100 0000 0111112 1112 222333332 689999996432211
Q ss_pred --------hhhcc--cCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 141 --------IRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 141 --------~~~~~--~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
...++ +..+.++++.|.....-+..+.. ++.+. ..+.|++++.||.|...... .....+.+.+..+
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g 304 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTK-LEKADSLYANQLG 304 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBT
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCccccccc-HHHHHHHHHHhcC
Confidence 11122 67899999998732211111110 11111 13579999999999864332 2333445566677
Q ss_pred CcEEEEcCCCCCC
Q psy3450 211 MAFFEVSPLCDFN 223 (432)
Q Consensus 211 ~~~~evSAktg~n 223 (432)
......++....+
T Consensus 305 ~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 305 ELLSPPSKRYAAE 317 (369)
T ss_dssp TTBCSSCGGGTTT
T ss_pred CccCCCCchhhhh
Confidence 6665555554333
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.95 E-value=5.3e-05 Score=77.20 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=81.1
Q ss_pred eEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccch
Q psy3450 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT 139 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~ 139 (432)
...++|+|++|+|||||+|.+..-.... .+.. ..+....+.. ..+.-+...-.+.+||++|......
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~----~GsI------~~~g~~~t~~---~~v~q~~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEE----EGAA------KTGVVEVTME---RHPYKHPNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTS----TTSC------CCCC----CC---CEEEECSSCTTEEEEECCCGGGSSC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcc----CceE------EECCeeccee---EEeccccccCCeeehHhhcccchHH
Confidence 3478999999999999999973311110 0100 0000000000 0111111112478999998532111
Q ss_pred hhhhc-----ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCC--C-----CcccCHH----HHH
Q psy3450 140 IIRSY-----SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLA--F-----NRTVTTR----EAE 203 (432)
Q Consensus 140 l~~~~-----~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~--~-----~r~v~~e----e~~ 203 (432)
....+ +.+.+.+++ +|..... -+. ..+...+.. .+.|+++|.||.|+. + -.....+ .+.
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqr-v~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATRFK-KND-IDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSCCC-HHH-HHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCCcc-HHH-HHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 11111 234455554 7764311 111 122233333 247999999999973 1 0111222 233
Q ss_pred HHH----HhcC---CcEEEEcC--CCCCCHHHHHHHHHHHH
Q psy3450 204 MYA----IKNQ---MAFFEVSP--LCDFNIRESFTELSRRA 235 (432)
Q Consensus 204 ~~a----~~~~---~~~~evSA--ktg~nI~elf~~L~~~i 235 (432)
++. .+.+ ..++.+|+ ..+.|++++.+.+.+.+
T Consensus 211 ~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 333 1222 36788999 67778999999998877
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.93 E-value=3.6e-05 Score=73.90 Aligned_cols=24 Identities=25% Similarity=0.636 Sum_probs=21.1
Q ss_pred ceEEEEEeCcccchhHHHHHhhhc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYL 82 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~ 82 (432)
+.++++++|++|+|||||+|.++.
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhC
Confidence 357999999999999999999843
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.84 E-value=1.1e-06 Score=88.39 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=72.3
Q ss_pred EEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCccccccceeEEEEEECCeEEEEEEEeCCCCcccchh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTI 140 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~~~~i~i~~~~v~l~i~Dt~G~e~~~~l 140 (432)
.+|+++|.+|||||||+|+++....... ..........| +|.+. ..+.+++. +.++||||......+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~-----~~~~~~~~~~g---tT~~~--~~~~~~~~---~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET-----ENVITTSHFPG---TTLDL--IDIPLDEE---SSLYDTPGIINHHQM 227 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC-----SSCCEEECCC-------CE--EEEESSSS---CEEEECCCBCCTTSG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc-----ccceecCCCCC---eecce--EEEEecCC---eEEEeCCCcCcHHHH
Confidence 4799999999999999999844321100 00001112222 11121 22333332 689999997433211
Q ss_pred h--------hhc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHhcC
Q psy3450 141 I--------RSY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ 210 (432)
Q Consensus 141 ~--------~~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~~~ 210 (432)
. ..+ .+..+.+++++|.....-+..+.. ++.+. ..+.|+++|.||.|..... -.....+.+.+..+
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~-~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRT-KLEKADELYKNHAG 303 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEE-EHHHHHHHHHHHBT
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccc-cHHHHHHHHHHHhC
Confidence 1 111 256788888888632211111100 11111 1357999999999986432 22333344556667
Q ss_pred CcEEEEcC
Q psy3450 211 MAFFEVSP 218 (432)
Q Consensus 211 ~~~~evSA 218 (432)
..+...++
T Consensus 304 ~~l~p~~~ 311 (368)
T 3h2y_A 304 DLLSPPTP 311 (368)
T ss_dssp TTBCSSCH
T ss_pred CccCCCch
Confidence 65444443
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.73 E-value=2.2e-05 Score=75.14 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=62.2
Q ss_pred CCCcc-cchhhhhcccCceEEEEEEeCCCCCChhh--HHHHHHHHHhhCCCCcEEEEEECccCCCCcccCHHHHHHHHHh
Q psy3450 132 SGQGR-FCTIIRSYSRGAQGILLVYDITNKWSFDG--IDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIK 208 (432)
Q Consensus 132 ~G~e~-~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~--l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~~ee~~~~a~~ 208 (432)
||+.. ........+.++|++|+|+|+.++.+..+ +. |+ ++|.++|.||+||.+... .+...++.++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 45432 22344567789999999999999877653 23 32 589999999999965311 1223344455
Q ss_pred cCCcEEEEcCCCCCCHHHHHHHHHHH
Q psy3450 209 NQMAFFEVSPLCDFNIRESFTELSRR 234 (432)
Q Consensus 209 ~~~~~~evSAktg~nI~elf~~L~~~ 234 (432)
.+.++ .+||+++.|++++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999998876543
No 223
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=97.70 E-value=1.3e-05 Score=54.08 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=32.2
Q ss_pred hhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhh
Q psy3450 316 VISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
|-|||.+|+.+|..++... .++||||..||..|+.|-
T Consensus 1 v~sLQHLCR~~I~~~~~~~-~~~LpLP~~Lk~yL~ey~ 37 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHLDSY-EKVTQLPGPIREFLDQYD 37 (40)
T ss_pred CccHHHHHHHHHHHHcCCC-cccCCCCHHHHHHHHHCC
Confidence 4689999999999998555 379999999999999874
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.67 E-value=1.1e-05 Score=82.69 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCcccch-hhh---h--cccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCC-c-EEEEEECccCCCC
Q psy3450 123 RVKLQLWDTSGQGRFCT-IIR---S--YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV-P-KVLVGNRLHLAFN 194 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~-l~~---~--~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~i-P-iILVgNK~DL~~~ 194 (432)
.+.+.|+||+|...... +.. . ....+|.+++|.|.+... +.......+. +.+ | ..+|.||+|....
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---TTSCSCEEEEEECSSSCST
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---hcccCCeEEEEeCCCCccc
Confidence 35679999999754311 111 1 123689999999986542 2222233332 335 6 7899999997421
Q ss_pred cccCHHHHHHHHHhcCCcEEEEcCCCCCCHH
Q psy3450 195 RTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225 (432)
Q Consensus 195 r~v~~ee~~~~a~~~~~~~~evSAktg~nI~ 225 (432)
...+..+....+.++..++ .|.+++
T Consensus 254 ----~g~~l~~~~~~~~pi~~ig--~Ge~~~ 278 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFIG--IGEGID 278 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEEC--CSSSSS
T ss_pred ----hHHHHHHHHHHCCCEEEee--cCcccc
Confidence 1234456677788877765 444443
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=3.6e-05 Score=75.38 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=62.6
Q ss_pred chhhhhcccCceEEEEEEeCCCCCC-hhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc--CHHHHHHHHHhcCCcEE
Q psy3450 138 CTIIRSYSRGAQGILLVYDITNKWS-FDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV--TTREAEMYAIKNQMAFF 214 (432)
Q Consensus 138 ~~l~~~~~~~ad~iIlV~Dvt~~~S-f~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v--~~ee~~~~a~~~~~~~~ 214 (432)
..+.+..+.++|.+++|+|+.++.. ...+.+++..... .++|.+||.||+||.++... ..++..++.+..+.+.+
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 3344556789999999999997754 3444555544333 46899999999999754220 12233344445678999
Q ss_pred EEcCCCCCCHHHHHHH
Q psy3450 215 EVSPLCDFNIRESFTE 230 (432)
Q Consensus 215 evSAktg~nI~elf~~ 230 (432)
.+||+++.|++++++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999998887654
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.38 E-value=0.00093 Score=68.50 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCcccch-hhh-----hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc
Q psy3450 124 VKLQLWDTSGQGRFCT-IIR-----SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV 197 (432)
Q Consensus 124 v~l~i~Dt~G~e~~~~-l~~-----~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v 197 (432)
+.+.|+||+|...... +.. .....+|.++||.|++... +.......+.+.. .+..+|.||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~~--~i~gVIlTKlD~~~~--- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEAT--PIGSIIVTKLDGSAK--- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHSC--TTEEEEEECCSSCSS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhhC--CCeEEEEECCCCccc---
Confidence 5679999999543211 111 1123578999999987642 2333334444332 255689999997532
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCCCCCHHH
Q psy3450 198 TTREAEMYAIKNQMAFFEVSPLCDFNIRE 226 (432)
Q Consensus 198 ~~ee~~~~a~~~~~~~~evSAktg~nI~e 226 (432)
...+.......+.|+..++. |+++++
T Consensus 255 -gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 -GGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp -HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred -ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 23345556677888887875 665543
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.36 E-value=0.00016 Score=69.88 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~ 81 (432)
...++|+++|.+|||||||+|++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 345899999999999999999983
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.31 E-value=6.7e-05 Score=71.72 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.6
Q ss_pred EEEEEeCcccchhHHHHHhhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L~ 81 (432)
++++++|.+|||||||+|++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 699999999999999999983
No 229
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.23 E-value=0.00092 Score=66.72 Aligned_cols=85 Identities=20% Similarity=0.137 Sum_probs=56.6
Q ss_pred cccCceEEEEEEeCCCCC-ChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCccc-CHHHHHHHHHhcCCcEEEEcCCCC
Q psy3450 144 YSRGAQGILLVYDITNKW-SFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTV-TTREAEMYAIKNQMAFFEVSPLCD 221 (432)
Q Consensus 144 ~~~~ad~iIlV~Dvt~~~-Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v-~~ee~~~~a~~~~~~~~evSAktg 221 (432)
...++|.+++|.+. ++. +...+.+++...... ++|.+||.||+||.++... ..++.....+..|++++.+||+++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46889999988765 454 334446665544433 4788999999999653210 011122233456889999999999
Q ss_pred CCHHHHHHHH
Q psy3450 222 FNIRESFTEL 231 (432)
Q Consensus 222 ~nI~elf~~L 231 (432)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887653
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.06 E-value=0.0012 Score=64.18 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=58.2
Q ss_pred EEEEEEEeCCCCcc--cch-hhh-----hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCc-EEEEEECccCCC
Q psy3450 123 RVKLQLWDTSGQGR--FCT-IIR-----SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVP-KVLVGNRLHLAF 193 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~--~~~-l~~-----~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iP-iILVgNK~DL~~ 193 (432)
.+.+.|+||||... ... +.. .....+|.+++|.|.+.. .+.......+.. ..| ..+|.||.|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 35679999999766 311 211 123468999999998642 333233333333 356 678999999742
Q ss_pred CcccCHHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 194 NRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 194 ~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
....+..++...+.++..++ +|++++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 23345567778888888776 56666543
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.0018 Score=66.29 Aligned_cols=91 Identities=9% Similarity=0.045 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCCcc--cc-hhhh---hc--ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCC
Q psy3450 123 RVKLQLWDTSGQGR--FC-TIIR---SY--SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFN 194 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~--~~-~l~~---~~--~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~ 194 (432)
.+.+.|+||+|... .. .+.. .. .-..+.++||.|..... +.......+.+.. .+..||.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---~a~~~a~~f~~~~--~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---KAYDLASRFHQAS--PIGSVIITKMDGTA- 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GGHHHHHHHHHHC--SSEEEEEECGGGCS-
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---HHHHHHHHHhccc--CCcEEEEecccccc-
Confidence 35578999999543 11 1111 11 12458999999987642 2333444444332 35789999999742
Q ss_pred cccCHHHHHHHHHhcCCcEEEEcCCCCCCH
Q psy3450 195 RTVTTREAEMYAIKNQMAFFEVSPLCDFNI 224 (432)
Q Consensus 195 r~v~~ee~~~~a~~~~~~~~evSAktg~nI 224 (432)
....+.......+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233455566677889888875 6655
No 232
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.67 E-value=0.00072 Score=62.51 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=30.8
Q ss_pred ccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
|-.-|||+++|++|||||+|+.|+.. ..|...+.++.+.++..|.+.++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEec
Confidence 33448999999999999999999987 67777777777777777766665
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.65 E-value=0.0033 Score=56.33 Aligned_cols=85 Identities=9% Similarity=-0.051 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCCcccchhhhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhC---CCCcEEEEEECccCCCCcccCH
Q psy3450 123 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---PGVPKVLVGNRLHLAFNRTVTT 199 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~---~~iPiILVgNK~DL~~~r~v~~ 199 (432)
.+.+.|+|+++.. .......+..+|.+|++.+.+.. + ..+..+++.+.+.. ++.++.+|.|+.|... ...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~---~~~ 147 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA---TML 147 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE---EEE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc---hHH
Confidence 3667999999865 23444566779999999986544 4 67777777776543 4678899999998521 223
Q ss_pred HHHHHHHHhcCCcEE
Q psy3450 200 REAEMYAIKNQMAFF 214 (432)
Q Consensus 200 ee~~~~a~~~~~~~~ 214 (432)
++..++.++++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 455666666666554
No 234
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.60 E-value=0.0016 Score=69.04 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.8
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL 82 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~ 82 (432)
...++|+|+|.+|||||||+|+|+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcC
Confidence 4568899999999999999999843
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.57 E-value=0.00046 Score=71.26 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred ceEEEEEeCcccchhHHHHHhhhcCCCCcccccCCCCcCccccCCCcccccccee--EEEEEECCeEEEEEEEeCCCCcc
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK--TTTILLDGKRVKLQLWDTSGQGR 136 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L~~~~~~~~~~~~~~~~~~~~~~ig~~~~tid~~--~~~i~i~~~~v~l~i~Dt~G~e~ 136 (432)
..++|+++|.+|+||||+.++|... .. ...+. +..+. .......+......+||..|++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~-l~-------------~~~~~----t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~ 99 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY-LN-------------FIGVP----TREFNVGQYRRDMVKTYKSFEFFLPDNEEG 99 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HH-------------HTTCC----EEEEEHHHHHHHHHCSCCCGGGGCTTCHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH-Hh-------------ccCCC----ceEEecchhhhhhccCCCcccccCCCCHHH
Confidence 3578999999999999999997110 00 00000 00000 00000011123347899998732
Q ss_pred --cchhh--------hhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhh
Q psy3450 137 --FCTII--------RSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176 (432)
Q Consensus 137 --~~~l~--------~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~ 176 (432)
+...+ ..++...++.++|+|.++. +++....|+..+++.
T Consensus 100 ~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 100 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 23332 4566678899999999988 577778888877765
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.42 E-value=0.005 Score=60.65 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=53.9
Q ss_pred EEEEEeCCCCcccch-hhhhc-----ccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCCCcccC
Q psy3450 125 KLQLWDTSGQGRFCT-IIRSY-----SRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT 198 (432)
Q Consensus 125 ~l~i~Dt~G~e~~~~-l~~~~-----~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~~r~v~ 198 (432)
.+.++||+|...... +.... .-..|-.+++.|.+.. .++...+..+.+.. -.-+|+.||.|... .
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~--~it~iilTKlD~~a----~ 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV--KIDGIILTKLDADA----R 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS--CCCEEEEECGGGCS----C
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc--CCCEEEEeCcCCcc----c
Confidence 356799999743221 11110 1236788999997654 34444444444332 13467889999632 1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCCHHHH
Q psy3450 199 TREAEMYAIKNQMAFFEVSPLCDFNIRES 227 (432)
Q Consensus 199 ~ee~~~~a~~~~~~~~evSAktg~nI~el 227 (432)
.-.+...+...+.|+..++ +|.+++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2345566777788888887 67666543
No 237
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.29 E-value=0.0043 Score=66.16 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|+|++|+|||||++.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I 65 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEAL 65 (608)
T ss_dssp CEECCCCTTSCHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHH
Confidence 4999999999999999997
No 238
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0047 Score=55.80 Aligned_cols=34 Identities=26% Similarity=0.602 Sum_probs=25.5
Q ss_pred ccccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 5 PVVATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 5 ~~~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+....|.++++.+||+++|+.++|||+++.++..
T Consensus 15 ~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 15 VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp -------CCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCccccccceEEEEECcCCCCHHHHHHHHHh
Confidence 3445566888999999999999999999999876
No 239
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0054 Score=54.30 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=27.1
Q ss_pred cccccccceeeEEEEecCCCcccceechhhh
Q psy3450 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 8 ~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..++++|+.+||+++|+.++|||+++.++..
T Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 15 YFQGNFDYMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EETTEEEECEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccccCeeeEEEEECCCCcCHHHHHHHHhc
Confidence 3445788899999999999999999999876
No 240
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=95.72 E-value=0.0034 Score=55.81 Aligned_cols=46 Identities=39% Similarity=0.382 Sum_probs=37.8
Q ss_pred cccccccccchhhhhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhh
Q psy3450 304 VNKNKYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYA 353 (432)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
+.+.+|++ -.+-+||.+|+.+|..++ ..|++||||..|+..|+.|-
T Consensus 121 ~~L~~P~~--~~~~sLqhlcR~~i~~~~--~~~~~lplp~~l~~yl~~y~ 166 (169)
T 2c9w_A 121 LYLTKPLY--TSAPSLQHLCRLTINKCT--GAIWGLPLPTRLKDYLEEYK 166 (169)
T ss_dssp CCCCCBCC--SSCCCHHHHHHHHHHHHC--SCGGGSSSCHHHHHHHHTCC
T ss_pred ceecCccc--cccccHHHHHHHHHHHhh--cchhhCCCCHHHHHHHHhCC
Confidence 33444443 366899999999999998 68999999999999999884
No 241
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=95.68 E-value=0.0025 Score=57.77 Aligned_cols=40 Identities=40% Similarity=0.585 Sum_probs=36.0
Q ss_pred hhHhhhhhhhhhcccceeeccCCCChHHHHHhhhhhhccc
Q psy3450 317 ISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTS 356 (432)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
.|||.||+.+|..++..-.|++||||..||..|+.|--.+
T Consensus 137 ~sLqhLcR~~i~~~~~~~~i~~LPLP~~Lk~yl~~y~y~~ 176 (187)
T 2izv_A 137 FSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKS 176 (187)
T ss_dssp CCHHHHHHHHHHHHSCHHHHHTSSSCHHHHHHHTSSEEEE
T ss_pred ccHHHHHHHHHHhhcCcCcccccCCCHHHHHHHHhCCCcc
Confidence 3999999999999998888999999999999999986543
No 242
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.46 E-value=0.0088 Score=52.81 Aligned_cols=31 Identities=32% Similarity=0.735 Sum_probs=25.3
Q ss_pred cccccccceeeEEEEecCCCcccceechhhh
Q psy3450 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 8 ~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+++++.+||+++|+.++|||+++.++..
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 3344677889999999999999999999876
No 243
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.37 E-value=0.0071 Score=53.96 Aligned_cols=35 Identities=43% Similarity=0.802 Sum_probs=27.2
Q ss_pred cccccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 4 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 4 ~~~~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.||+++...+++.+||+++|+.++|||+++.++..
T Consensus 21 ~pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 21 RPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp ----CC-CCCSEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcccccCcccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 46767667788899999999999999999999875
No 244
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.05 E-value=0.017 Score=59.19 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.3
Q ss_pred cceEEEEEeCcccchhHHHHHhhhc
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGLYL 82 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L~~ 82 (432)
.+..-|.|+|++++|||+|+|.|+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456788999999999999999854
No 245
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.00 E-value=0.017 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.827 Sum_probs=24.5
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+++..+||+++|+.++|||+++.++..
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHc
Confidence 567789999999999999999999876
No 246
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.98 E-value=0.015 Score=51.11 Aligned_cols=33 Identities=42% Similarity=0.746 Sum_probs=25.5
Q ss_pred cccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 6 VVATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 6 ~~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|..+..++++.+||+++|+.++|||+++.++..
T Consensus 6 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp -----CCCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhhcCcccccceEEEEECcCCCCHHHHHHHHHc
Confidence 444555677889999999999999999999876
No 247
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=50.81 Aligned_cols=30 Identities=40% Similarity=0.731 Sum_probs=24.3
Q ss_pred ccccccceeeEEEEecCCCcccceechhhh
Q psy3450 9 TQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 9 ~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|+++++..+||+++|+.++|||+++.++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 445778899999999999999999999875
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.93 E-value=0.29 Score=49.78 Aligned_cols=84 Identities=15% Similarity=0.031 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCCcccc-hhhh-----hcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcE-EEEEECccCCCCc
Q psy3450 123 RVKLQLWDTSGQGRFC-TIIR-----SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPK-VLVGNRLHLAFNR 195 (432)
Q Consensus 123 ~v~l~i~Dt~G~e~~~-~l~~-----~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPi-ILVgNK~DL~~~r 195 (432)
.+.+.|+||||..... .+.. ......+.+++|+|..... +.......+.. .+++ -+|.||.|.....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 3567999999965432 1211 1234678999999987542 22223333332 2443 4789999974221
Q ss_pred ccCHHHHHHHHHhcCCcEEEE
Q psy3450 196 TVTTREAEMYAIKNQMAFFEV 216 (432)
Q Consensus 196 ~v~~ee~~~~a~~~~~~~~ev 216 (432)
..+..+....+.++..+
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 23344555556554433
No 249
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.92 E-value=0.018 Score=50.61 Aligned_cols=29 Identities=41% Similarity=0.721 Sum_probs=25.5
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
....|+.+||+++|+.++|||+++.++..
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHc
Confidence 34667889999999999999999999876
No 250
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.82 E-value=0.015 Score=50.73 Aligned_cols=28 Identities=54% Similarity=0.896 Sum_probs=15.0
Q ss_pred ccccceeeEEEEecCCCcccceechhhh
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+++++.+||+++|+.++|||+++.++..
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp CCCSEEEEEEEECCCCC-----------
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567889999999999999999999875
No 251
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.78 E-value=0.011 Score=53.26 Aligned_cols=35 Identities=43% Similarity=0.630 Sum_probs=25.0
Q ss_pred cccccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 4 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 4 ~~~~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++.+....++++.+||+++|+.++|||+++.++..
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp --------CCSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred CcCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhc
Confidence 34444445778899999999999999999998875
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.68 E-value=0.021 Score=50.74 Aligned_cols=33 Identities=42% Similarity=0.800 Sum_probs=25.5
Q ss_pred cccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 6 VVATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 6 ~~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+....++++.+|++++|+.|+|||+++.++..
T Consensus 19 ~~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 19 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp -----CCCSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 334445678889999999999999999999876
No 253
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.68 E-value=0.018 Score=51.62 Aligned_cols=32 Identities=41% Similarity=0.766 Sum_probs=24.1
Q ss_pred ccccccccceeeEEEEecCCCcccceechhhh
Q psy3450 7 VATQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 7 ~~~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+..+++++.+||+++|+.++|||+++.++..
T Consensus 20 ~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 20 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp ------CCEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcccccccceEEEEECcCCCCHHHHHHHHhh
Confidence 33445677889999999999999999999875
No 254
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.63 E-value=0.024 Score=50.03 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=25.3
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..++++.+||+++|+.++|||+++.++..
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34667789999999999999999999876
No 255
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.47 E-value=0.025 Score=49.21 Aligned_cols=28 Identities=36% Similarity=0.794 Sum_probs=25.0
Q ss_pred ccccceeeEEEEecCCCcccceechhhh
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++.++.+||+++|+.++|||+++.++..
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHc
Confidence 4567889999999999999999999876
No 256
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.43 E-value=0.028 Score=50.13 Aligned_cols=27 Identities=48% Similarity=0.872 Sum_probs=24.5
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++++.+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 567889999999999999999999876
No 257
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.025 Score=51.36 Aligned_cols=27 Identities=48% Similarity=0.882 Sum_probs=24.1
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++++.+||+++|+.++|||+++.++..
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhc
Confidence 467889999999999999999999876
No 258
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.021 Score=50.45 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||||++.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999997
No 259
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.99 E-value=0.026 Score=50.36 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.1
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+..+||+++|+.|+|||+++.++..
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 567789999999999999999999853
No 260
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.96 E-value=0.03 Score=49.99 Aligned_cols=29 Identities=31% Similarity=0.569 Sum_probs=24.1
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+++..+||+++|+.++|||+++.++..
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 34567889999999999999999999875
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.93 E-value=0.024 Score=50.45 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
+++++|++|+|||||++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l 20 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKI 20 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 262
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.93 E-value=0.09 Score=46.12 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.5
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+...+||+++|+.++|||+++.++..
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 33566679999999999999999999876
No 263
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.87 E-value=0.036 Score=48.15 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.8
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.....+||+++|+.++|||+++.++..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 455679999999999999999999875
No 264
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.74 E-value=0.039 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.-+||+++|+.++|||+++.++..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 348999999999999999999875
No 265
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.65 E-value=0.045 Score=47.98 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=22.2
Q ss_pred ccccccceeeEEEEecCCCcccceechhhh
Q psy3450 9 TQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 9 ~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
....+...+||+++|+.++|||+++.++..
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHc
Confidence 333445678999999999999999999876
No 266
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.63 E-value=0.04 Score=47.37 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=24.4
Q ss_pred ccccceeeEEEEecCCCcccceechhhh
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+.++..+||+++|+.++|||+++.++..
T Consensus 2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 2 AGKSSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp CCCEEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccceeEEEEECCCCCCHHHHHHHHHc
Confidence 3456778999999999999999999875
No 267
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.62 E-value=0.031 Score=49.42 Aligned_cols=30 Identities=20% Similarity=0.556 Sum_probs=24.4
Q ss_pred ccccccceeeEEEEecCCCcccceechhhh
Q psy3450 9 TQKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 9 ~~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.-...+..+||+++|+.++|||+++.++..
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhc
Confidence 334567789999999999999999999876
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.59 E-value=0.029 Score=50.55 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 269
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.56 E-value=0.044 Score=48.58 Aligned_cols=27 Identities=41% Similarity=0.802 Sum_probs=24.3
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++++.+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhc
Confidence 457889999999999999999999876
No 270
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.56 E-value=0.042 Score=48.75 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=22.4
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+.+..+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHc
Confidence 456789999999999999999999876
No 271
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.49 E-value=0.037 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=17.1
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
+++.|++|+|||+|++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999987
No 272
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.35 E-value=0.039 Score=49.74 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=22.7
Q ss_pred cccc-cccceeeEEEEecCCCcccceechhhh
Q psy3450 8 ATQK-QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 8 ~~~~-~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..|+ .++..+||+++|+.++|||+++.++..
T Consensus 19 ~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 19 SHMDPNQNVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp --------CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcccceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3344 556789999999999999999999886
No 273
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.25 E-value=0.057 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.9
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+...+||+++|+.++|||+++.++..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHc
Confidence 556679999999999999999999765
No 274
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.22 E-value=0.06 Score=46.78 Aligned_cols=27 Identities=56% Similarity=0.961 Sum_probs=24.4
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+++..+||+++|+.++|||+++.++..
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhc
Confidence 567789999999999999999999876
No 275
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.11 E-value=0.054 Score=46.01 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=22.0
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|+.+||+++|+.++|||+++.++..
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHHh
Confidence 3568999999999999999999875
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.05 E-value=0.041 Score=48.83 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.9
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
++|+|++|+|||||++.+
T Consensus 4 i~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp EEEESSSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999987
No 277
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.99 E-value=0.065 Score=45.61 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+++.+||+++|+.++|||+++.++..
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHc
Confidence 46778999999999999999988875
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.98 E-value=0.041 Score=50.05 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=18.1
Q ss_pred EEEEeCcccchhHHHHHhhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~ 81 (432)
-|+|+|++|+|||||++.|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999999973
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.94 E-value=0.042 Score=48.97 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999987
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.92 E-value=0.043 Score=49.42 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=17.6
Q ss_pred EEEeCcccchhHHHHHhhh
Q psy3450 63 FLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L~ 81 (432)
|+|+|++||||+||+++|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 281
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.79 E-value=0.05 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=21.6
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+..+||+++|+.++|||+++.++..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 345678999999999999999999876
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.73 E-value=0.042 Score=48.41 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|+|||||++.+
T Consensus 11 ~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999997
No 283
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.67 E-value=0.08 Score=44.82 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=22.2
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+..+||+++|+.|+|||+++.++..
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc
Confidence 4678999999999999999999876
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.61 E-value=0.047 Score=47.89 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.2
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999975
No 285
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.074 Score=46.83 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.1
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.++..+||+++|+.++|||+++.++..
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhc
Confidence 456779999999999999999999876
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.57 E-value=0.05 Score=49.09 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||||++.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 287
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.54 E-value=0.068 Score=48.73 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.8
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.++..+||+++|++++|||+|+.++..
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 456779999999999999999999863
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.52 E-value=0.051 Score=49.19 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|+|+|++|+|||||++.|
T Consensus 10 ~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999997
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.48 E-value=0.052 Score=50.03 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=18.0
Q ss_pred EEEEeCcccchhHHHHHhhh
Q psy3450 62 KFLLVGDSDVGKQEILSGLY 81 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L~ 81 (432)
-++|+|++|+|||||++.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999973
No 290
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.46 E-value=0.071 Score=46.91 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.2
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
....+||+++|+.++|||+++.++..
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh
Confidence 34568999999999999999999886
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.45 E-value=0.053 Score=49.61 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 292
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.37 E-value=0.076 Score=45.64 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=22.3
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+..+||+++|..|+|||+++.++..
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999999999876
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.35 E-value=0.058 Score=46.38 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|.|.+|+||||+.+.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.30 E-value=0.057 Score=48.57 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|+|+|++|+|||||++.|
T Consensus 14 ~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999997
No 295
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.15 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.0
Q ss_pred EEEEe--CcccchhHHHHHhhhc
Q psy3450 62 KFLLV--GDSDVGKQEILSGLYL 82 (432)
Q Consensus 62 KVvvv--G~~gvGKSSLln~L~~ 82 (432)
||+|+ |.+++||+.|++++|.
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~ 51 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFH 51 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHC
T ss_pred ceEEEecCcccccHHHHHHHHhc
Confidence 45555 9999999999999843
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.23 E-value=0.06 Score=46.05 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|+|+|.+|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999986
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.09 E-value=0.064 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.5
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
....|.|+|++|+|||||++.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999999987
No 298
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.06 E-value=0.094 Score=45.73 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=34.7
Q ss_pred ccceeeEEEEecCCCcccceechhhhHHHHHhhhcCccccccccccceEEEEEeC
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLLVG 67 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~~l~~~~~~~~~~~~~~~~~~~~iKVvvvG 67 (432)
++..+||+++|..++|||+++.++.. ..+.+...++...++..+.+-++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~ 52 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLN 52 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEec
Confidence 35678999999999999999999886 44444444555555555545444
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.99 E-value=0.067 Score=46.29 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|+|.+|+|||||++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 300
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.96 E-value=0.094 Score=46.09 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.5
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.|+|||+++.++..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999999886
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.91 E-value=0.11 Score=44.59 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+...+||+++|+.|+|||+++.++..
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34568999999999999999999876
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.90 E-value=0.1 Score=46.21 Aligned_cols=25 Identities=52% Similarity=0.927 Sum_probs=23.1
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++.+|++++|+.|+|||+++.++..
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 5789999999999999999999876
No 303
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.86 E-value=0.096 Score=45.69 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.2
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+....+||+++|+.++|||+++.++..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 334468999999999999999999876
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.81 E-value=0.072 Score=47.01 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999997
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.78 E-value=0.073 Score=46.10 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|++.|.+|+||||+.+.|
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5889999999999999997
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.73 E-value=0.076 Score=47.88 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
++|+|.|.+|+||||+.+.|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999987
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.72 E-value=0.073 Score=47.34 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|+|++|+|||||++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 308
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.66 E-value=0.11 Score=44.04 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++..+||+++|+.++|||+++.++..
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHc
Confidence 34568999999999999999999876
No 309
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.64 E-value=0.094 Score=46.09 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=22.8
Q ss_pred ccccceeeEEEEecCCCcccceechhhh
Q psy3450 11 KQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 11 ~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
......+||+++|+.++|||+++.++..
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhc
Confidence 3445668999999999999999999876
No 310
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.62 E-value=0.056 Score=52.62 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|||||||+|.+
T Consensus 175 ~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp EEEEEESHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHh
Confidence 6899999999999999997
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.58 E-value=0.08 Score=47.77 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
++|+|+|.+|+||||+.+.|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999987
No 312
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.57 E-value=0.11 Score=44.04 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.3
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3568999999999999999999876
No 313
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.50 E-value=0.093 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred ccceEEEEEeCcccchhHHHHHhh
Q psy3450 57 YDYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 57 ~~~~iKVvvvG~~gvGKSSLln~L 80 (432)
......|+|+|.+|+||||+.+.|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 344568999999999999999987
No 314
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.49 E-value=0.085 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.|+|+|++|+|||||++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.47 E-value=0.11 Score=45.16 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.|+++|.+|+||||+++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999999987
No 316
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.41 E-value=0.14 Score=44.11 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.7
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+...+||+++|+.++|||+++.++..
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHc
Confidence 345678999999999999999998876
No 317
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.13 Score=45.13 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.9
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.++|||+++.++..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999886
No 318
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.25 E-value=0.083 Score=52.51 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=18.0
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|||||||+|.+
T Consensus 217 ~~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5899999999999999998
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.24 E-value=0.088 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.|+|+|++|+|||||++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999987
No 320
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.20 E-value=0.091 Score=45.64 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|++.|.+|+||||+.+.|
T Consensus 5 ~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999987
No 321
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.18 E-value=0.12 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 458999999999999999999876
No 322
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.12 E-value=0.18 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.-+||+++|+.++|||+++.++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 458999999999999999998876
No 323
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.06 E-value=0.097 Score=45.65 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|+.|+|||||++.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 324
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.13 Score=45.09 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.9
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|+.....+||+++|+.++|||+++.++..
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34445568999999999999999999876
No 325
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.03 E-value=0.11 Score=45.18 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.3
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+..+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999999876
No 326
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.03 E-value=0.099 Score=46.25 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|+|.+|+||||+++.|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5899999999999999987
No 327
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.00 E-value=0.094 Score=45.91 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|+|||+|++.+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp EEEECCSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999986
No 328
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.00 E-value=0.094 Score=48.72 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999986
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.98 E-value=0.1 Score=46.58 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.|+++|.+|+||||+.+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999999987
No 330
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.95 E-value=0.24 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
--+++.|++|+|||+|++.+
T Consensus 40 ~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999999987
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.94 E-value=0.1 Score=45.55 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|.|.+|+||||+.+.|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.93 E-value=0.098 Score=46.70 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|.+|+||||+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 333
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.91 E-value=0.12 Score=46.27 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
|...+..+||+++|+.++|||+++.++..
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhc
Confidence 45566779999999999999999999875
No 334
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.88 E-value=0.095 Score=50.57 Aligned_cols=19 Identities=53% Similarity=0.684 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|||||||+|.+
T Consensus 167 i~~l~G~sG~GKSTLln~l 185 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRL 185 (302)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.71 E-value=0.1 Score=47.69 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4789999999999999987
No 336
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.71 E-value=0.1 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|+|||||+|.+
T Consensus 171 iv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHh
Confidence 5789999999999999997
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.67 E-value=0.14 Score=43.17 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+||+++|+.++|||+++.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999999876
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.61 E-value=0.19 Score=43.14 Aligned_cols=29 Identities=45% Similarity=0.633 Sum_probs=24.6
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+.++..+||+++|+.++|||+++.++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHh
Confidence 34567789999999999999999999875
No 339
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.60 E-value=0.17 Score=44.91 Aligned_cols=27 Identities=44% Similarity=0.754 Sum_probs=21.5
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+..+||+++|+.++|||+++.++..
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 455679999999999999999998875
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.55 E-value=0.12 Score=45.10 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 341
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.53 E-value=0.1 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
+++++|++|+|||||++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CEEEESCCSSCHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 4789999999999999987
No 342
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.43 E-value=0.13 Score=45.03 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 6 ~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.43 E-value=0.12 Score=44.57 Aligned_cols=19 Identities=42% Similarity=0.798 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.+++.|++|+|||+|++.+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.42 E-value=0.13 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|.|+|+.|+|||||++.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 345
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.40 E-value=0.12 Score=46.28 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
--|+|+|++|+|||||++.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999987
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.40 E-value=0.44 Score=46.06 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=17.1
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
+++.|++|+||||+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~l 56 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMAL 56 (354)
T ss_dssp EEEECSTTSSHHHHHHTH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999986
No 347
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.39 E-value=0.1 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.35 E-value=0.1 Score=46.23 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.+.|+|++|+|||||++.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp EEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.35 E-value=0.11 Score=46.26 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
.+|+|+|.+|+||||+.+.|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 36899999999999999987
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.33 E-value=0.13 Score=46.56 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|++|+||||+++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
No 351
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.31 E-value=0.2 Score=44.61 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999999876
No 352
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.29 E-value=0.25 Score=41.76 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|++.|++|+|||++++.+
T Consensus 29 ~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CEEEEEETTCCHHHHHGGG
T ss_pred cEEEECCCCccHHHHHHHH
Confidence 4899999999999999986
No 353
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.28 E-value=0.13 Score=43.70 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.8
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
++||+++|+.++|||+++.++..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999864
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.25 E-value=0.084 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=13.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||||++.+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EEEEECSCC----CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 355
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.25 E-value=0.12 Score=45.77 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|.+|+|||||++++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 5789999999999999997
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.24 E-value=0.15 Score=44.64 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 5 ~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999987
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.20 E-value=0.11 Score=46.81 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||||++.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 358
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.15 E-value=0.13 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.6
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.++|||+++.++..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3458999999999999999999876
No 359
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.09 E-value=0.13 Score=44.15 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999999886
No 360
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.02 E-value=0.16 Score=44.53 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 6 ~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 361
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.01 E-value=0.12 Score=46.59 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
+|+|.|.+|+||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 362
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.01 E-value=0.13 Score=48.03 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 363
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.00 E-value=0.14 Score=47.59 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 364
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.96 E-value=0.13 Score=48.62 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|+.|+|||||++.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 365
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.93 E-value=0.31 Score=41.16 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|++.|++|+|||++++.+
T Consensus 26 ~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CEEEESSTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.90 E-value=0.097 Score=46.87 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|+|.|.+|+||||+++.|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999987
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.82 E-value=0.15 Score=47.56 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.76 E-value=0.15 Score=47.74 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 369
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.75 E-value=0.15 Score=46.50 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
+.|+++|+||+||+|...++
T Consensus 1 M~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 370
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.75 E-value=0.15 Score=44.00 Aligned_cols=19 Identities=47% Similarity=0.828 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.+++.|++|+|||+|++.+
T Consensus 45 ~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp EEEEESCGGGCHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 5789999999999999986
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.72 E-value=0.14 Score=46.93 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.72 E-value=0.15 Score=50.42 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=19.3
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
.-+++|+|++|+|||||++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999999987
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.71 E-value=0.1 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.4
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+..+||+++|++++|||+++.++..
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999874
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.71 E-value=0.14 Score=48.18 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 375
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.70 E-value=0.26 Score=48.92 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 32 ~~~llGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCL 50 (359)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 4789999999999999986
No 376
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.69 E-value=0.15 Score=49.47 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6899999999999999987
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.67 E-value=0.17 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999987
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.67 E-value=0.19 Score=43.16 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.9
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
....+||+++|+.++|||+++.++..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Confidence 34568999999999999999999875
No 379
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.66 E-value=0.17 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
..++|+|.|.+|+||||+.++|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999987
No 380
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.64 E-value=0.14 Score=48.84 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 381
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.59 E-value=0.14 Score=48.29 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l 45 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASM 45 (261)
T ss_dssp EEEEECSTTCSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5899999999999999987
No 382
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.57 E-value=0.17 Score=45.11 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
+.|.++|.+|+||||+.+.|
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 383
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.45 E-value=0.15 Score=47.42 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 384
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.45 E-value=0.15 Score=48.31 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 52 i~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHH
Confidence 4789999999999999986
No 385
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.45 E-value=0.15 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999987
No 386
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.43 E-value=0.17 Score=43.46 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
+|+|.|.+|+||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 387
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.39 E-value=0.17 Score=46.77 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 388
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.39 E-value=0.22 Score=44.24 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.3
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
....|+|.|.+|+||||+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999999987
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.38 E-value=0.17 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
....|+|+|.+|+||||+.+.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999987
No 390
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.33 E-value=0.14 Score=46.81 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp EEEEECCTTSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 391
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.19 E-value=0.17 Score=47.66 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 392
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.16 E-value=0.15 Score=44.33 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
+|+|+|.+|+||||+.+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999987
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.15 E-value=0.22 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 357999999999999999999875
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.14 E-value=0.2 Score=43.78 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|++.|.+|+||||+.+.|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999886
No 395
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.13 E-value=0.16 Score=47.60 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999987
No 396
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.13 E-value=0.16 Score=47.48 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 397
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.12 E-value=0.22 Score=42.34 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
+.+||+++|+.++|||+++.++..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 568999999999999999999875
No 398
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.09 E-value=0.17 Score=44.07 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 12 ~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 35889999999999999987
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.07 E-value=0.18 Score=45.70 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=18.6
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|.+|+||||+.+.|
T Consensus 5 ~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999987
No 400
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.01 E-value=0.39 Score=42.88 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.6
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+..+||+++|..|+|||+++.++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999999876
No 401
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.00 E-value=0.21 Score=44.61 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.1
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|+|+|.+|+|||||++.|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.00 E-value=0.18 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.97 E-value=0.17 Score=47.69 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 404
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.94 E-value=0.17 Score=47.92 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 405
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.94 E-value=0.2 Score=44.20 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 11 ~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
No 406
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.93 E-value=0.18 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=6.8
Q ss_pred ceeeEEEEecCCCcccceechhhhH
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKLE 39 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~~ 39 (432)
..+||+++|+.++|||+++.++...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4589999999999999999998763
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.91 E-value=0.17 Score=49.02 Aligned_cols=19 Identities=47% Similarity=0.595 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp EEEEESSSCHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 6899999999999999986
No 408
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.90 E-value=0.19 Score=48.06 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|+.|+|||||++.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999986
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.88 E-value=0.19 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|+|+|.+|+||||+.+.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999987
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.86 E-value=0.38 Score=47.92 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 31 ~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHH
Confidence 4789999999999999987
No 411
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.82 E-value=0.34 Score=46.30 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
..-|++.|++|+|||||.+.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999997
No 412
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.77 E-value=0.16 Score=43.69 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||+|++.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp EEEEESSSTTTTCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.75 E-value=0.17 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|.+|+||||+.+.|
T Consensus 8 ~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999987
No 414
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.68 E-value=0.22 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.0
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
...+||+++|.+++|||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999986
No 415
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.67 E-value=0.19 Score=46.59 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=17.3
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
++++|++|+|||+|++.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999987
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.67 E-value=0.19 Score=45.81 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|.|.+|+||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 417
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.61 E-value=0.19 Score=47.26 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999986
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.57 E-value=0.35 Score=47.82 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 33 ~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp EEEEECSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999986
No 419
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.54 E-value=0.22 Score=44.38 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 11 ~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 46999999999999999987
No 420
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.53 E-value=0.21 Score=44.17 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999987
No 421
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.51 E-value=0.19 Score=47.52 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999986
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.50 E-value=0.2 Score=44.03 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|++.|.+|+||||+++.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999987
No 423
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.45 E-value=0.2 Score=45.02 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=17.3
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||+..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4788999999999999987
No 424
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.39 E-value=0.19 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.8
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
....-|.|+|++|+|||||++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHH
Confidence 34457899999999999999987
No 425
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.26 E-value=0.29 Score=43.04 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.|+|||+++.++..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999999999999875
No 426
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.22 E-value=0.2 Score=47.47 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=17.4
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
++++|++|+|||+|++.+
T Consensus 47 vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp EEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 999999999999999987
No 427
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.18 E-value=0.22 Score=41.93 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEEEecCCCcccceechhhh
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~ 38 (432)
+||+++|+.++|||+++.++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6999999999999999999876
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.14 E-value=0.21 Score=44.01 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=21.6
Q ss_pred ccceeeEEEEecCCCcccceechhhh
Q psy3450 13 YDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 13 ~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+..+||+++|+.++|||+++.++..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 44568999999999999999999876
No 429
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.12 E-value=0.23 Score=43.44 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|++.|.+|+||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999987
No 430
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.12 E-value=0.27 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=19.6
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
....|+++|.+|+||||+.+.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3467999999999999999987
No 431
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.12 E-value=0.23 Score=47.05 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987
No 432
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.12 E-value=0.22 Score=44.93 Aligned_cols=20 Identities=15% Similarity=0.322 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.+++.|++|+|||+|++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 433
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.11 E-value=0.21 Score=48.37 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=47.3
Q ss_pred EEEEeCCCCcccch-h-----------hhhcccCceEEEEEEeCCCCCChhhHHHHHHHHHhhCCCCcEEEEEECccCCC
Q psy3450 126 LQLWDTSGQGRFCT-I-----------IRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAF 193 (432)
Q Consensus 126 l~i~Dt~G~e~~~~-l-----------~~~~~~~ad~iIlV~Dvt~~~Sf~~l~~~l~~i~~~~~~iPiILVgNK~DL~~ 193 (432)
+.+.||+|...... . .+......+.++++.|.+... ++...+..+.+.. + ..+|+.||.|...
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---~~~~~~~~~~~~~-~-~t~iivTh~d~~a 261 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---NGLEQAKKFHEAV-G-LTGVIVTKLDGTA 261 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---HHHHHHHHHHHHH-C-CSEEEEECTTSSC
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---HHHHHHHHHHHHc-C-CcEEEEECCcccc
Confidence 46889998642211 0 011234567788888876553 3333344443321 1 3467789988542
Q ss_pred CcccCHHHHHHHHHhcCCcEEEEcCCCCCCHH
Q psy3450 194 NRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225 (432)
Q Consensus 194 ~r~v~~ee~~~~a~~~~~~~~evSAktg~nI~ 225 (432)
.. -.+.......+.|+..+. +|++++
T Consensus 262 ~g----g~~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 262 KG----GVLIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp CC----TTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred cc----cHHHHHHHHHCCCeEEEe--CCCChh
Confidence 21 223455566777766665 444443
No 434
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.05 E-value=0.44 Score=41.29 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred cccceeeEEEEecCCCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.++..+||+++|+.++|||+++ ++..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~ 35 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIY 35 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHH
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHH
Confidence 4567899999999999999998 4443
No 435
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.04 E-value=0.2 Score=43.97 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 436
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.98 E-value=0.31 Score=42.76 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.7
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|+++|.+|+||||+++.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 356899999999999999987
No 437
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=87.96 E-value=0.13 Score=45.47 Aligned_cols=29 Identities=21% Similarity=0.040 Sum_probs=20.1
Q ss_pred cccccceeeEEEEecCCCcccceechhhh
Q psy3450 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 10 ~~~~d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
....+..+||+++|+.++|||+++.++..
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34556679999999999999999875543
No 438
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.93 E-value=0.23 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 358999999999999999999886
No 439
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.93 E-value=0.28 Score=42.15 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.8
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
-+||+++|+.++|||+++.++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999988875
No 440
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.93 E-value=0.29 Score=41.10 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.+||+++|+.|+|||+++.++..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 37999999999999999999876
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.87 E-value=0.28 Score=43.11 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
..+||+++|+.++|||+++.++..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999876
No 442
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.87 E-value=0.24 Score=42.62 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|++.|.+|+||||+.+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CEEEESCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 443
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.81 E-value=0.29 Score=40.98 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.4
Q ss_pred eeEEEEecCCCcccceechhhh
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~ 38 (432)
+||+++|+.++|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6999999999999999988876
No 444
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.79 E-value=0.21 Score=45.25 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|.+|+||||+.+.|
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 445
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.78 E-value=0.26 Score=43.50 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|+|+|.+|+||||+.+.|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 467999999999999999987
No 446
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=87.60 E-value=0.58 Score=47.84 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.0
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
.+..=|.|+|..++|||+|+|.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~l 87 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFM 87 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHH
Confidence 34556779999999999999955
No 447
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.54 E-value=0.24 Score=43.53 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999987
No 448
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.45 E-value=0.25 Score=45.74 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|.|+|+.|+|||||++.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 449
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.37 E-value=0.25 Score=46.22 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-|+|+|++|+|||||.+.|
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 3789999999999999987
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.34 E-value=0.21 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=20.9
Q ss_pred cceeeEEEEecCCCcccceechhhh
Q psy3450 14 DYLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 14 d~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
...+||+++|+.++|||+++.++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999999886
No 451
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.31 E-value=0.27 Score=45.82 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.5
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|+|++|+|||||++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
No 452
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.29 E-value=0.32 Score=46.67 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.5
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
....|.|+|++|+|||||++.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999876
No 453
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.27 E-value=0.26 Score=43.93 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|.|++|+|||+|++.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 454
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.26 E-value=0.28 Score=42.70 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 455
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.25 E-value=0.25 Score=48.99 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 43 ~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999987
No 456
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.25 E-value=0.24 Score=44.19 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999987
No 457
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.13 E-value=0.26 Score=46.41 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=17.3
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
++++|++|+|||+|++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHH
Confidence 899999999999999987
No 458
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.12 E-value=0.21 Score=43.42 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=14.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+|.|.+|+||||+.+.|
T Consensus 6 ~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CEEEEECCC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 459
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.08 E-value=0.27 Score=43.91 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=17.7
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||+|+..+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999997
No 460
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.05 E-value=0.25 Score=43.04 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.2
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-.+|+|+.|+|||||+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 3689999999999999987
No 461
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.05 E-value=0.27 Score=46.09 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+.+.|
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999987
No 462
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.03 E-value=0.28 Score=42.82 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.|+|+|.+|+||||+.+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp SEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 463
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.02 E-value=0.28 Score=43.35 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-+.++|.+|+|||||+.++
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999997
No 464
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.01 E-value=0.26 Score=48.91 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 31 ~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHH
Confidence 4789999999999999987
No 465
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.95 E-value=0.26 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.6
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|+.|+|||||++.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999987
No 466
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.94 E-value=0.25 Score=48.85 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 28 ~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp EEEEECCCTHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 4789999999999999987
No 467
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.87 E-value=0.27 Score=48.89 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 31 ~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHH
Confidence 4789999999999999987
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.84 E-value=0.26 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.7
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
-.-|+|+|..|+|||||++.+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 356899999999999999987
No 469
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.80 E-value=0.27 Score=47.45 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
--++++|+.|+||||+++.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKL 120 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 46889999999999999987
No 470
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.79 E-value=0.32 Score=43.48 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.9
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|.|+|.+|+|||||++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987
No 471
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.75 E-value=0.27 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 31 ~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHH
Confidence 4789999999999999987
No 472
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.72 E-value=0.3 Score=42.56 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..|+++|.+|+||||+++.|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999987
No 473
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.67 E-value=0.28 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++++|++|+|||||++.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4789999999999999987
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.66 E-value=0.3 Score=43.34 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.+++.|++|+|||+|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46889999999999999987
No 475
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.62 E-value=0.29 Score=44.42 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=17.5
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||+|+..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999999987
No 476
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.60 E-value=0.29 Score=45.33 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.2
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.++++|++|+|||+|++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 35899999999999999987
No 477
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.55 E-value=0.28 Score=48.88 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++++|++|+|||||++.+
T Consensus 39 ~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 4789999999999999986
No 478
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.38 E-value=0.27 Score=46.65 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-++|+|++|+|||||+..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4789999999999999987
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.26 E-value=0.42 Score=39.84 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.3
Q ss_pred eeEEEEecCCCcccceechhhh
Q psy3450 17 LKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 17 ~Ki~liGd~gvGKssll~r~~~ 38 (432)
+||+++|+.|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6999999999999999998875
No 480
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.20 E-value=0.3 Score=48.56 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=17.4
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
-+.|+|++|+|||||++.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCV 74 (366)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHH
Confidence 4789999999999999986
No 481
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.17 E-value=0.3 Score=48.31 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.17 E-value=0.39 Score=43.21 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.6
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
+.|+|.|.+|+||||+.+.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999987
No 483
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.12 E-value=0.32 Score=44.70 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.9
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
|+|+|+||+||+|...+|
T Consensus 32 I~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp EEEECCTTCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999999999887
No 484
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.05 E-value=0.41 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.0
Q ss_pred cceEEEEEeCcccchhHHHHHhh
Q psy3450 58 DYLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 58 ~~~iKVvvvG~~gvGKSSLln~L 80 (432)
...+-|.|+|++|+|||||++.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999999987
No 485
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.99 E-value=0.41 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.-+||+++|+.|+|||+++.++..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999999875
No 486
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.89 E-value=0.34 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
-+||+++|+.|+|||+++.++..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 48999999999999999999876
No 487
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.84 E-value=0.3 Score=48.34 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=18.0
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp CEEEEESSSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 488
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.84 E-value=0.33 Score=48.29 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=17.9
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l 156 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASM 156 (372)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.78 E-value=0.43 Score=41.41 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
-+||+++|+.|+|||+++.++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 38999999999999999999876
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.56 E-value=0.43 Score=40.23 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCcccceechhhh
Q psy3450 16 LLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 16 l~Ki~liGd~gvGKssll~r~~~ 38 (432)
-+||+++|+.++|||+++.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36999999999999999999876
No 491
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.56 E-value=0.32 Score=46.90 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.9
Q ss_pred eEEEEEeCcccchhHHHHHhh
Q psy3450 60 LLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 60 ~iKVvvvG~~gvGKSSLln~L 80 (432)
...|.|+|++|+|||||++.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987
No 492
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.53 E-value=0.36 Score=43.37 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=18.0
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
.-|+++|.+|+||||+.+.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999986
No 493
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.48 E-value=0.41 Score=42.53 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCcccceechhhh
Q psy3450 15 YLLKFLLVGDSDVGKQEILSGYKL 38 (432)
Q Consensus 15 ~l~Ki~liGd~gvGKssll~r~~~ 38 (432)
.-+||+++|+.++|||+++.++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 347999999999999999998876
No 494
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.44 E-value=0.32 Score=47.53 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=17.8
Q ss_pred EEEEeCcccchhHHHHHhh
Q psy3450 62 KFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 62 KVvvvG~~gvGKSSLln~L 80 (432)
.++|+|++|+|||||++.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l 191 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSI 191 (330)
T ss_dssp CEEEEESTTSCHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 495
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.38 E-value=0.48 Score=45.11 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.0
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
..+++.|++|+|||+|++.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 35889999999999999987
No 496
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.35 E-value=0.37 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
-.+++.|++|+|||+|++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 35899999999999999987
No 497
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=85.34 E-value=0.29 Score=45.64 Aligned_cols=27 Identities=19% Similarity=0.264 Sum_probs=24.2
Q ss_pred cccceeeEEEEecC---------CCcccceechhhh
Q psy3450 12 QYDYLLKFLLVGDS---------DVGKQEILSGYKL 38 (432)
Q Consensus 12 ~~d~l~Ki~liGd~---------gvGKssll~r~~~ 38 (432)
.++..+||+++|+. ++|||+++.++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 45677999999999 9999999999875
No 498
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.33 E-value=0.37 Score=44.38 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=18.4
Q ss_pred EEEEEeCcccchhHHHHHhh
Q psy3450 61 LKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 61 iKVvvvG~~gvGKSSLln~L 80 (432)
.-|++.|.+|+||||+++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 56899999999999999987
No 499
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.31 E-value=0.44 Score=44.20 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.6
Q ss_pred ceEEEEEeCcccchhHHHHHhh
Q psy3450 59 YLLKFLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 59 ~~iKVvvvG~~gvGKSSLln~L 80 (432)
..+.|.|.|.+|+||||+.+.|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999999987
No 500
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.31 E-value=0.64 Score=44.48 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.0
Q ss_pred EEEeCcccchhHHHHHhh
Q psy3450 63 FLLVGDSDVGKQEILSGL 80 (432)
Q Consensus 63 VvvvG~~gvGKSSLln~L 80 (432)
+++-|++|+|||++++.+
T Consensus 51 ~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp EEECSSTTSSHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHH
Confidence 455566999999999987
Done!