RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3450
(432 letters)
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 196 bits (501), Expect = 9e-62
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT- 115
+ +K ++VG+ VGK ++ R+ + G + YK T
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQ------RYCK---------------GIFTK--DYKKTI 38
Query: 116 -------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR 168
I ++ + V+L LWDT+GQ F I ++Y RGAQ +LV+ T++ SF+ I
Sbjct: 39 GVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS 98
Query: 169 WLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
W ++V +P LV N++ L + + EAE A + ++ F+ S D N+ E F
Sbjct: 99 WREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
Query: 229 TELSRRALQR 238
L+ + LQ+
Sbjct: 159 KYLAEKHLQK 168
Score = 39.0 bits (92), Expect = 9e-04
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGY 36
+ +K ++VG+ VGK ++ Y
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRY 25
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 196 bits (500), Expect = 2e-61
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 15/184 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ YD+L K L++GDS VGK +L RF D + + + G + +K
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLL---------RF-ADNTFSGSYITTIG-----VDFKI 48
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ ++G++VKLQ+WDT+GQ RF TI +Y RG G+++VYD+T+ SF + RWL E+
Sbjct: 49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN 108
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
++ V ++LVGN+ + V T +A +A + + FE S + N+ E F ++
Sbjct: 109 QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168
Query: 235 ALQR 238
L+
Sbjct: 169 VLRA 172
Score = 41.8 bits (99), Expect = 1e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+ YD+L K L++GDS VGK +L +
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRF 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 194 bits (496), Expect = 8e-61
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 23/192 (11%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY----D 107
+ YD K +LVGDS VGK +L RF + F +G+ D
Sbjct: 2 SGVDFYDVAFKVMLVGDSGVGKTCLLV---------RF-----KDGAFLAGTFISTVGID 47
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
++ + +DG +VKLQ+WDT+GQ RF ++ +Y R A +LL+YD+TNK SFD I
Sbjct: 48 ----FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103
Query: 168 RWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226
WL E+ E+A V +L+GN++ A R V + E A + + F E S N+
Sbjct: 104 AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163
Query: 227 SFTELSRRALQR 238
+FT +++ +R
Sbjct: 164 AFTAIAKELKRR 175
Score = 41.8 bits (99), Expect = 1e-04
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGYK 37
+ YD K +LVGDS VGK +L +K
Sbjct: 2 SGVDFYDVAFKVMLVGDSGVGKTCLLVRFK 31
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 193 bits (494), Expect = 2e-60
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ DY+ K LL+G+S VGK L R+ D S F S G +
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLF---------RY-ADDSFTPAFVSTVG-----ID 58
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+K T+ KR+KLQ+WDT+GQ R+ TI +Y RGA G LL+YDI N+ SF + W
Sbjct: 59 FKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWAT 118
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+++ ++ +LVGN+ L R V + A FFE S + N+++ F
Sbjct: 119 QIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178
Query: 231 LSRRALQR 238
L ++
Sbjct: 179 LVDVICEK 186
Score = 42.2 bits (100), Expect = 8e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ DY+ K LL+G+S VGK L Y
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRY 42
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 194 bits (494), Expect = 3e-60
Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 16/197 (8%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
+ +P+ + +YDYL K LL+GDS VGK +L RF D + + S G
Sbjct: 18 FQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLL---------RF-ADDTYTESYISTIG 67
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ +K TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+
Sbjct: 68 -----VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122
Query: 165 GIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
+ +WL+E++ +A V K+LVGN+ L + V A+ +A + F E S N
Sbjct: 123 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
Query: 224 IRESFTELSRRALQRNG 240
+ +SF ++ +R G
Sbjct: 183 VEQSFMTMAAEIKKRMG 199
Score = 43.4 bits (103), Expect = 4e-05
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ +P+ + +YDYL K LL+GDS VGK +L +
Sbjct: 18 FQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRF 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 193 bits (492), Expect = 3e-60
Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L RF + + S F S G + +K
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLF---------RF-SEDAFNSTFISTIG-----IDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Query: 234 RALQR 238
+
Sbjct: 168 DIKAK 172
Score = 41.8 bits (99), Expect = 1e-04
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYK 37
K YDYL K LL+GDS VGK +L +
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFS 29
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 191 bits (487), Expect = 2e-59
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY 106
+ + Q +DY+ K L++G+S VGK L R+ D + F S G
Sbjct: 10 GRENLYFQGNFDYMFKLLIIGNSSVGKTSFLF---------RY-ADDTFTPAFVSTVG-- 57
Query: 107 DDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI 166
+ +K T+ KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+ +
Sbjct: 58 ---IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV 114
Query: 167 DRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
W +++ ++ +LVGN+ + R V T + ++ A + FFE S + ++R
Sbjct: 115 QDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174
Query: 226 ESFTELSRRALQR 238
++F L +
Sbjct: 175 QAFERLVDAICDK 187
Score = 42.6 bits (101), Expect = 6e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 3 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ + Q +DY+ K L++G+S VGK L Y
Sbjct: 10 GRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRY 43
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 190 bits (486), Expect = 3e-59
Identities = 66/189 (34%), Positives = 103/189 (54%), Gaps = 24/189 (12%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYDDML 110
+ YD+L KFL++G++ GK +L +F E F S G +
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLH---------QF-----IEKKFKDDSNHTIG-----V 45
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
+ + I + GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + WL
Sbjct: 46 EFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL 105
Query: 171 KEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFT 229
+ A + +L GN+ L +R VT EA +A +N++ F E S L N+ E+F
Sbjct: 106 TDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165
Query: 230 ELSRRALQR 238
+ +R+ L +
Sbjct: 166 QCARKILNK 174
Score = 40.6 bits (96), Expect = 3e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILS 34
+ YD+L KFL++G++ GK +L
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLH 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 191 bits (487), Expect = 4e-59
Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 16/201 (7%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+YDYL K LL+G+S VGK +L RF D + + + S G + +K
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLL---------RF-SDDTYTNDYISTIG-----VDFKI 47
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 48 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 107
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R
Sbjct: 108 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 167
Query: 234 RALQRNGMERLWRSNKVGRKP 254
+ + + L + +
Sbjct: 168 QIKESMSQQNLNETTQKKEDK 188
Score = 41.1 bits (97), Expect = 2e-04
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+YDYL K LL+G+S VGK +L +
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRF 28
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 190 bits (486), Expect = 5e-59
Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ + YD+L K +L+G++ VGK ++ RF G + G +
Sbjct: 18 GSMEDYDFLFKIVLIGNAGVGKTCLVR---------RF-TQGLFPPGQGATIG-----VD 62
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ T+ ++G++VKLQ+WDT+GQ RF +I +SY R A ++L YDIT + SF + WL+
Sbjct: 63 FMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLR 122
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
E+E++A V VLVGN++ LA R V+ + AE ++ M + E S N+ + F +
Sbjct: 123 EIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182
Query: 231 LSRRALQR 238
L+ R +
Sbjct: 183 LACRLISE 190
Score = 41.9 bits (99), Expect = 1e-04
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ + YD+L K +L+G++ VGK ++ +
Sbjct: 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRF 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 190 bits (486), Expect = 5e-59
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 16/186 (8%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+DY+ K L++G+S VGK L R+ D S F S G + +K
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLF---------RY-ADDSFTPAFVSTVG-----IDFK 46
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
TI + KR+KLQ+WDT+G R+ TI +Y RGA G +L+YDITN+ SF+ + W ++
Sbjct: 47 VKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 106
Query: 174 EEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
+ ++ +LVGN+ + R V++ A FFE S + N++++F L
Sbjct: 107 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
Query: 233 RRALQR 238
++
Sbjct: 167 DVICEK 172
Score = 41.9 bits (99), Expect = 1e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 QKQYDYLLKFLLVGDSDVGKQEILSGY 36
+DY+ K L++G+S VGK L Y
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLFRY 28
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 190 bits (484), Expect = 8e-59
Identities = 72/188 (38%), Positives = 106/188 (56%), Gaps = 16/188 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ +YDYL K LL+GDS VGK +L RF D + + S G +
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKSCLLL---------RF-ADDTYTESYISTIG-----VD 52
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+K TI LDGK +KLQ+WDT+GQ RF TI SY RGA GI++VYD+T++ SF+ + +WL+
Sbjct: 53 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
E++ +A V K+LVGN+ L + V A+ +A + F E S N+ +SF
Sbjct: 113 EIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172
Query: 231 LSRRALQR 238
++ +R
Sbjct: 173 MAAEIKKR 180
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ +YDYL K LL+GDS VGK +L +
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRF 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 189 bits (482), Expect = 9e-59
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 24/191 (12%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYD 107
Y Y+ K++++GD VGK +L +F +E F + G
Sbjct: 7 TAPYNYSYIFKYIIIGDMGVGKSCLLH---------QF-----TEKKFMADCPHTIG--- 49
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
+ + T I + G+++KLQ+WDT+GQ RF + RSY RGA G L+VYDIT + +++ +
Sbjct: 50 --VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 107
Query: 168 RWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226
WL + P +L+GN+ L R VT EA+ +A +N + F E S N+ +
Sbjct: 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167
Query: 227 SFTELSRRALQ 237
+F E +++ Q
Sbjct: 168 AFLEAAKKIYQ 178
Score = 40.3 bits (95), Expect = 3e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILS 34
Y Y+ K++++GD VGK +L
Sbjct: 7 TAPYNYSYIFKYIIIGDMGVGKSCLLH 33
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 189 bits (483), Expect = 1e-58
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ Y+++ K +L+G+S VGK +LS RF + G + + T
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLS---------RF-TRNEFSHDSRTTIG-----VEFST 64
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T++L VK Q+WDT+G R+ I +Y RGA G LLV+D+T ++ ++RWLKE+
Sbjct: 65 RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 124
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+HA + +LVGN+ L+ R V T EA M+A N + F E S L N+ +F + +
Sbjct: 125 DHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184
Query: 234 RALQR 238
+
Sbjct: 185 EIFAK 189
Score = 39.9 bits (94), Expect = 6e-04
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILS 34
+ Y+++ K +L+G+S VGK +LS
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLS 43
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 189 bits (483), Expect = 1e-58
Identities = 69/195 (35%), Positives = 103/195 (52%), Gaps = 24/195 (12%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS- 103
+ + + +YDYL K +L+GDS VGK +LS RF + + F S
Sbjct: 14 LPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLS---------RF-----TRNEFNLESK 59
Query: 104 ---GKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
G + + T +I +DGK +K Q+WDT+G R+ I +Y RGA G LLVYDI
Sbjct: 60 STIG-----VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH 114
Query: 161 WSFDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPL 219
+++ ++RWLKE+ +HA + +LVGN+ L R V T EA +A KN ++F E S L
Sbjct: 115 LTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSAL 174
Query: 220 CDFNIRESFTELSRR 234
N+ +F +
Sbjct: 175 DSTNVEAAFQTILTE 189
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILS 34
+ + + +YDYL K +L+GDS VGK +LS
Sbjct: 14 LPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLS 47
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 189 bits (483), Expect = 1e-58
Identities = 73/206 (35%), Positives = 107/206 (51%), Gaps = 24/206 (11%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYDDMLAY 112
YDYL K +L+GDS VGK +LS RF + + F S G + +
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLS---------RF-----TRNEFNLESKSTIG-----VEF 42
Query: 113 KTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
T +I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE
Sbjct: 43 ATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE 102
Query: 173 VEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+ +HA + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F +
Sbjct: 103 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
Query: 232 SRRALQRNGMERLWRSNKVGRKPLIN 257
+ +++ P N
Sbjct: 163 LTEIYRIVSQKQIADRAAHDESPGNN 188
Score = 40.0 bits (94), Expect = 6e-04
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 13 YDYLLKFLLVGDSDVGKQEILS 34
YDYL K +L+GDS VGK +LS
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLS 23
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 188 bits (481), Expect = 2e-58
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 24/187 (12%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYDDMLAY 112
D+L KFL++G + GK +L +F E+ F S G + +
Sbjct: 22 SDFLFKFLVIGSAGTGKSCLLH---------QF-----IENKFKQDSNHTIG-----VEF 62
Query: 113 KTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
+ + + GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + WL +
Sbjct: 63 GSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD 122
Query: 173 VEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
A P + +L GN+ L R VT EA +A +N++ F E S L N+ E+F +
Sbjct: 123 ARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182
Query: 232 SRRALQR 238
+R L +
Sbjct: 183 ARTILNK 189
Score = 39.9 bits (94), Expect = 7e-04
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 13 YDYLLKFLLVGDSDVGKQEILS 34
D+L KFL++G + GK +L
Sbjct: 22 SDFLFKFLVIGSAGTGKSCLLH 43
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 189 bits (483), Expect = 2e-58
Identities = 70/192 (36%), Positives = 104/192 (54%), Gaps = 24/192 (12%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYD 107
YD L K +L+GDS VGK +LS RF +++ F S G
Sbjct: 5 DYGYDYDLLFKIVLIGDSGVGKSNLLS---------RF-----TKNEFNMDSKSTIG--- 47
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
+ + T T+ ++GKR+K Q+WDT+GQ R+ I +Y RGA G L+VYDI+ S++ +
Sbjct: 48 --VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCN 105
Query: 168 RWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226
WL E+ E+A V L+GN+ LA R V T E++ +A +NQ+ F E S L N+ +
Sbjct: 106 HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165
Query: 227 SFTELSRRALQR 238
+F EL Q+
Sbjct: 166 AFEELINTIYQK 177
Score = 40.1 bits (94), Expect = 6e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILS 34
YD L K +L+GDS VGK +LS
Sbjct: 5 DYGYDYDLLFKIVLIGDSGVGKSNLLS 31
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 188 bits (480), Expect = 3e-58
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYD 107
+ YL K++++GD+ VGK +L +F ++ F G
Sbjct: 13 GLVPRGSYLFKYIIIGDTGVGKSCLLL---------QF-----TDKRFQPVHDLTIG--- 55
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
+ + + +DGK++KLQ+WDT+GQ F +I RSY RGA G LLVYDIT + +F+ +
Sbjct: 56 --VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT 113
Query: 168 RWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRE 226
WL++ +H+ + +L+GN+ L R V E E +A ++ + F E S N+ E
Sbjct: 114 SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173
Query: 227 SFTELSRRALQR 238
+F ++ ++
Sbjct: 174 AFINTAKEIYRK 185
Score = 40.7 bits (96), Expect = 3e-04
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILS 34
+ YL K++++GD+ VGK +L
Sbjct: 13 GLVPRGSYLFKYIIIGDTGVGKSCLLL 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 188 bits (480), Expect = 3e-58
Identities = 62/189 (32%), Positives = 105/189 (55%), Gaps = 17/189 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ + D+ L+ +++G VGK ++ RF D + S G +
Sbjct: 18 GSPRPADFKLQVIIIGSRGVGKTSLME---------RF-TDDTFCEACKSTVG-----VD 62
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+K T+ L GK+++LQ+WDT+GQ RF +I +Y R A+GI+LVYDIT K +FD + +W+K
Sbjct: 63 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 122
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFT 229
++++A +LVGN+L +R +T ++ E +A + M F E S +FN+ E F
Sbjct: 123 MIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182
Query: 230 ELSRRALQR 238
+L L++
Sbjct: 183 KLVDDILKK 191
Score = 42.6 bits (101), Expect = 7e-05
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ + D+ L+ +++G VGK ++ +
Sbjct: 18 GSPRPADFKLQVIIIGSRGVGKTSLMERF 46
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 188 bits (479), Expect = 4e-58
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+QYD+L K +LVGD+ VGK ++ RF G+ S G + +
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQ---------RF-KTGAFSERQGSTIG-----VDFTM 68
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ + GKRVKLQ+WDT+GQ RF TI +SY R A G +L YDIT + SF + W+++V
Sbjct: 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQ-MAFFEVSPLCDFNIRESFTELS 232
++A + ++L+GN+ L+ R V+ EA+ A + E S N+ E+F ++
Sbjct: 129 KYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
Query: 233 RRALQRNG 240
+ R+G
Sbjct: 189 TELIMRHG 196
Score = 40.3 bits (95), Expect = 4e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+QYD+L K +LVGD+ VGK ++ +
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRF 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 187 bits (477), Expect = 8e-58
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ LK L++G+S VGK +L RF D + + + G +
Sbjct: 7 GMDEDVLTTLKILIIGESGVGKSSLLL---------RF-TDDTFDPELAATIG-----VD 51
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+K TI +DG + KL +WDT+GQ RF T+ SY RGAQG++LVYD+T + +F +D WL
Sbjct: 52 FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 111
Query: 172 EVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFT 229
E+E + + +LVGN++ NR V E +A K+ M F E S ++ +F
Sbjct: 112 ELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170
Query: 230 ELSRRALQRNGMERLWRSNKVGRKP 254
EL + +Q G LW S P
Sbjct: 171 ELVEKIIQTPG---LWESENQNSGP 192
Score = 41.1 bits (97), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ LK L++G+S VGK +L +
Sbjct: 7 GMDEDVLTTLKILIIGESGVGKSSLLLRF 35
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 187 bits (478), Expect = 1e-57
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ ++ + K L+GD VGK ++ R LDG E + + G +
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYIN---------RV-LDGRFEKNYNATVGAVN---- 48
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ T + G +K +WDT+GQ + + Y GA G +L +D+T++ + + RW+K
Sbjct: 49 HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVK 108
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
E + P V+ N++ + + ++ + +FE+S N F
Sbjct: 109 EFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168
Query: 231 LSRRALQRNGME 242
L+R R +
Sbjct: 169 LARIFTGRPDLI 180
Score = 41.1 bits (97), Expect = 2e-04
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGK 29
+ ++ + K L+GD VGK
Sbjct: 3 GSMERRELTYKICLIGDGGVGK 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 185 bits (473), Expect = 1e-57
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 17/182 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
D ++K LL+GDS VGK +L RF ++ F + G + +K T+
Sbjct: 1 DSIMKILLIGDSGVGKSCLLV---------RF-VEDKFNPSFITTIG-----IDFKIKTV 45
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++GK+VKLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ +F I +W K V EHA
Sbjct: 46 DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 105
Query: 178 -PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRAL 236
+LVGN+ + R VT + E A + + F E S D N+ E F L++
Sbjct: 106 NDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164
Query: 237 QR 238
++
Sbjct: 165 EK 166
Score = 37.9 bits (89), Expect = 0.002
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 14 DYLLKFLLVGDSDVGKQEILSGY 36
D ++K LL+GDS VGK +L +
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRF 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 185 bits (471), Expect = 4e-57
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 21/192 (10%)
Query: 49 PVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDD 108
+ + + K +++GDS+VGK + RF G + G
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTY---------RF-CAGRFPDRTEATIG---- 54
Query: 109 MLAYKTTTILLDGKRVKLQLWDTSGQGRF-CTIIRSYSRGAQGILLVYDITNKWSFDGID 167
+ ++ + +DG+R+K+QLWDT+GQ RF ++++ Y R ++ VYD+TN SF +
Sbjct: 55 -VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113
Query: 168 RWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS---PLCDF 222
W++E ++H +P++LVGN+ L V T A+ +A + M FE S P +
Sbjct: 114 AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173
Query: 223 NIRESFTELSRR 234
++ F L+ +
Sbjct: 174 HVEAIFMTLAHK 185
Score = 41.4 bits (98), Expect = 2e-04
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 5 PVVATQKQYDYLLKFLLVGDSDVGKQEILS 34
+ + + K +++GDS+VGK +
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTY 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 186 bits (473), Expect = 5e-57
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 17/188 (9%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
K YD ++K LL+GDS VGK +L RF ++ F + G +
Sbjct: 12 GNGKSYDSIMKILLIGDSGVGKSCLLV---------RF-VEDKFNPSFITTIG-----ID 56
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+K T+ ++GK+VKLQLWDT+GQ RF TI +Y RGA GI+LVYD+T++ +F I +W K
Sbjct: 57 FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFK 116
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
V EHA +LVGN+ + R VT + E A + + F E S D N+ E F
Sbjct: 117 TVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175
Query: 231 LSRRALQR 238
L++ ++
Sbjct: 176 LAKLIQEK 183
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
K YD ++K LL+GDS VGK +L +
Sbjct: 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRF 40
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 184 bits (469), Expect = 7e-57
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYDDMLAY 112
Y K +L+G+ VGK ++ R+ E+ F G ++
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVL---------RY-----CENKFNDKHITTLG-----ASF 43
Query: 113 KTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
T + + GKRV L +WDT+GQ RF + Y R + G +LVYDIT++ SF + W+KE
Sbjct: 44 LTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 103
Query: 173 VEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
+ + + +VGN++ L R V+ +EAE YA + S + I E F +L
Sbjct: 104 LRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
Query: 232 SRRALQ 237
+R ++
Sbjct: 164 CKRMIE 169
Score = 37.1 bits (87), Expect = 0.004
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 13 YDYLLKFLLVGDSDVGKQEILS 34
Y K +L+G+ VGK ++
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVL 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 184 bits (469), Expect = 8e-57
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 32/192 (16%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
A K +L+GD GK ++ RF + ++ +
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVL------RFVK---------------DQFVEF-- 40
Query: 112 YKTT--------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSF 163
++T T+ ++ VK ++WDT+GQ R+ ++ Y RGA ++V+D+TN+ SF
Sbjct: 41 QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASF 100
Query: 164 DGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222
+ +W++E++ P + L GN+ L R VT +A+ YA +N + F E S
Sbjct: 101 ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTAT 160
Query: 223 NIRESFTELSRR 234
N++E F E++RR
Sbjct: 161 NVKEIFYEIARR 172
Score = 37.1 bits (87), Expect = 0.004
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILS 34
A K +L+GD GK ++
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVL 30
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 184 bits (469), Expect = 1e-56
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
A K +L GD+ VGK L R + G +
Sbjct: 20 AKSFSSQKAYKIVLAGDAAVGKSSFLM---------RL-CKNEFRENISATLG-----VD 64
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
++ T+++DG+R LQLWDT+GQ RF +I +SY R A G+LL+YD+T + SF I W+
Sbjct: 65 FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD 124
Query: 172 EVEEHA-PGVPKVLVGN------RLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNI 224
+E+ A VP +LVGN + V E A+ F E S NI
Sbjct: 125 MIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
Query: 225 RESFTELSRRALQR 238
E+ L+R +R
Sbjct: 185 VEAVLHLAREVKKR 198
Score = 39.2 bits (92), Expect = 0.001
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILS 34
A K +L GD+ VGK L
Sbjct: 20 AKSFSSQKAYKIVLAGDAAVGKSSFLM 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 182 bits (464), Expect = 6e-56
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG-----KYD 107
+ YDYL+KFL +GDS VGK +L ++ DG S F + G K
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLY---------QY-TDGKFNSKFITTVGIDFREKRV 53
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
A + G+R+ LQLWDT+G RF ++ ++ R A G LL++D+TN+ SF +
Sbjct: 54 VYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR 113
Query: 168 RWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
W+ +++ HA VL GN+ L R V EA A K + +FE S NI
Sbjct: 114 NWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173
Query: 226 ESFTELSRRALQR--NGMERLW 245
+ L ++R +++ W
Sbjct: 174 HAIEMLLDLIMKRMERSVDKSW 195
Score = 42.2 bits (100), Expect = 9e-05
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 9 TQKQYDYLLKFLLVGDSDVGKQEILSGY 36
+ YDYL+KFL +GDS VGK +L Y
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQY 31
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 180 bits (459), Expect = 6e-55
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 16/204 (7%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
K + +G+ VGK +++ RF D + ++ G +
Sbjct: 8 GDFGNPLRKFKLVFLGEQSVGKTSLIT------RFMYDSFDNTYQATI----G-----ID 52
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ + T+ L+ + V+LQLWDT+G RF ++I SY R + ++VYDITN SF +W+
Sbjct: 53 FLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWID 112
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+V V +LVGN+ LA R V+ E E A + + F E S +N+++ F
Sbjct: 113 DVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 172
Query: 231 LSRRALQRNGMERLWRSNKVGRKP 254
++ + R + + K
Sbjct: 173 VAAALPGMESTQDRSREDMIDIKL 196
Score = 35.4 bits (82), Expect = 0.021
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
K + +G+ VGK +++ +
Sbjct: 8 GDFGNPLRKFKLVFLGEQSVGKTSLITRF 36
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 178 bits (455), Expect = 8e-55
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 38/196 (19%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT- 115
L K +L+GD VGK +++ R+ K+D T
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMN------RYVT---------------NKFDT--QLFHTI 40
Query: 116 -------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR 168
+ +DG V +Q+WDT+GQ RF ++ + RG+ LL + + + SF +
Sbjct: 41 GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 100
Query: 169 WLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDF 222
W KE +A P V++GN++ ++ R V+T EA+ + N +FE S
Sbjct: 101 WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
Query: 223 NIRESFTELSRRALQR 238
N+ +F E RR L
Sbjct: 160 NVAAAFEEAVRRVLAT 175
Score = 39.4 bits (93), Expect = 7e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGY 36
L K +L+GD VGK +++ Y
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRY 27
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 180 bits (458), Expect = 1e-54
Identities = 39/191 (20%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
A Q + K +LVGD GK + R L G E + + G +
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVK---------RH-LTGEFEKKYVATLG-----VE 51
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W +
Sbjct: 52 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHR 111
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ +P VL GN++ + + ++ ++ K + ++++S ++N + F L
Sbjct: 112 DLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169
Query: 232 SRRALQRNGME 242
+R+ + +E
Sbjct: 170 ARKLIGDPNLE 180
Score = 40.0 bits (94), Expect = 7e-04
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGK 29
A Q + K +LVGD GK
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGK 28
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 178 bits (453), Expect = 2e-54
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
K + +G+ VGK +++ RF D + ++ G +
Sbjct: 6 GDFGNPLRKFKLVFLGEQSVGKTSLIT------RFMYDSFDNTYQATI----G-----ID 50
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
+ + T+ L+ + V+LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+
Sbjct: 51 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID 110
Query: 172 EVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
+V V +LVGN+ L+ R V+T E E A + + F E S +N+++ F
Sbjct: 111 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170
Query: 231 LSRR 234
++
Sbjct: 171 VAAA 174
Score = 34.1 bits (79), Expect = 0.040
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
K + +G+ VGK +++ +
Sbjct: 6 GDFGNPLRKFKLVFLGEQSVGKTSLITRF 34
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 178 bits (454), Expect = 4e-54
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
YDYL+K L +GDS VGK L R+ +++ F + K+ +
Sbjct: 17 RGSGDYDYLIKLLALGDSGVGKTTFLY---------RY-----TDNKF---NPKFITTVG 59
Query: 112 --YKTTTILLDGK----------RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN 159
++ ++ + + +V LQLWDT+GQ RF ++ ++ R A G LL++D+T+
Sbjct: 60 IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS 119
Query: 160 KWSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
+ SF + W+ +++ +A VL+GN+ L R V R+A A K + +FE S
Sbjct: 120 QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179
Query: 218 PLCDFNIRESFTELSRRALQR 238
N+ ++ L ++R
Sbjct: 180 AATGQNVEKAVETLLDLIMKR 200
Score = 41.9 bits (99), Expect = 1e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGKQEILSGY 36
YDYL+K L +GDS VGK L Y
Sbjct: 17 RGSGDYDYLIKLLALGDSGVGKTTFLYRY 45
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 178 bits (453), Expect = 5e-54
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 36/197 (18%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ LLK +++GDS VGK +++ ++ K+ + YK
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMN------QYVN---------------KKFSN--QYKA 39
Query: 115 T--------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI 166
T +++D + V +Q+WDT+GQ RF ++ ++ RGA +LV+D+T +F +
Sbjct: 40 TIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
Query: 167 DRWLKEVEEHA-----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCD 221
D W E A P V++GN++ L + T R KN + +FE S
Sbjct: 100 DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEA 159
Query: 222 FNIRESFTELSRRALQR 238
N+ ++F ++R AL++
Sbjct: 160 INVEQAFQTIARNALKQ 176
Score = 39.2 bits (92), Expect = 0.001
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+ LLK +++GDS VGK +++ Y
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQY 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 177 bits (450), Expect = 7e-54
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+ + LK L+GD+ VGK I+ RF + +D
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVC------RFVQ---------------DHFDH-- 50
Query: 111 AYKTT--------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS 162
T T+ + K +WDT+GQ RF ++ Y RG+ ++VYDIT + S
Sbjct: 51 NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110
Query: 163 FDGIDRWLKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCD 221
F + +W+KE++EH + + GN+ L+ R V ++A+ YA E S
Sbjct: 111 FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 170
Query: 222 FNIRESFTELSRR 234
NI E F +SR+
Sbjct: 171 INIEELFQGISRQ 183
Score = 31.8 bits (73), Expect = 0.26
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 7 VATQKQYDYLLKFLLVGDSDVGKQEILS 34
+ + LK L+GD+ VGK I+
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVC 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 175 bits (446), Expect = 1e-53
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM------LAYKT 114
LK L+GD+ VGK I+ RF +D ++ T
Sbjct: 7 LKVCLLGDTGVGKSSIMW------RFVE---------------DSFDPNINPTIGASFMT 45
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ + K +WDT+G RF + Y RG+ ++VYDIT + +F + W++E+
Sbjct: 46 KTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR 105
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+H P + + GN+ L R V R+A+ YA F E S NI E F E+SR
Sbjct: 106 QHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 165
Query: 234 RALQ 237
R
Sbjct: 166 RIPS 169
Score = 27.1 bits (61), Expect = 8.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 17 LKFLLVGDSDVGKQEILS 34
LK L+GD+ VGK I+
Sbjct: 7 LKVCLLGDTGVGKSSIMW 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 174 bits (444), Expect = 3e-53
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 29/188 (15%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM------LAY 112
K +L+G+S VGK ++ RF + G++ + A+
Sbjct: 5 CQFKLVLLGESAVGKSSLVL------RFVK---------------GQFHEFQESTIGAAF 43
Query: 113 KTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
T T+ LD VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W+KE
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
Query: 173 VEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
++ A P + L GN+ LA R V +EA+ YA N + F E S N+ E F +
Sbjct: 104 LQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Query: 232 SRRALQRN 239
+++ L +N
Sbjct: 164 AKK-LPKN 170
Score = 27.1 bits (61), Expect = 7.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 15 YLLKFLLVGDSDVGKQEILS 34
K +L+G+S VGK ++
Sbjct: 5 CQFKLVLLGESAVGKSSLVL 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 174 bits (444), Expect = 4e-53
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGS----GKYDDMLAY 112
+ LK +++GD GK + + F ++ F G L +
Sbjct: 3 HMRQLKIVVLGDGASGKTSLTT---------CF-----AQETFGKQYKQTIG-----LDF 43
Query: 113 KTTTILLDGK-RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
I L G V LQ+WD GQ ++ Y GAQG+LLVYDITN SF+ ++ W
Sbjct: 44 FLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT 103
Query: 172 EVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRES 227
V++ + LVGN++ L RT+ + + +N + VS ++
Sbjct: 104 VVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163
Query: 228 FTELSRRALQ 237
F +++ L
Sbjct: 164 FQKVAAEILG 173
Score = 38.3 bits (90), Expect = 0.002
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 13 YDYLLKFLLVGDSDVGKQEILS 34
+ LK +++GD GK + +
Sbjct: 3 HMRQLKIVVLGDGASGKTSLTT 24
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 173 bits (441), Expect = 1e-52
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 39/201 (19%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ +LK +++GDS VGK ++ R+ KY YK
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMH------RYVN---------------DKYSQ--QYKA 39
Query: 115 T--------TILLDGKR-VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDG 165
T + +DG + +Q+WDT+GQ RF ++ ++ RGA +LVYD+TN SF+
Sbjct: 40 TIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFEN 99
Query: 166 IDRWLKEVEEHA-----PGVPKVLVGNRLHLA-FNRTVTTREAEMYAI-KNQMAFFEVSP 218
I W E HA P V++GN++ + V+ + A+ A + F S
Sbjct: 100 IKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159
Query: 219 LCDFNIRESFTELSRRALQRN 239
N+ +F E++R ALQ+N
Sbjct: 160 KNAINVDTAFEEIARSALQQN 180
Score = 39.5 bits (93), Expect = 7e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGY 36
+ +LK +++GDS VGK ++ Y
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRY 28
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 169 bits (431), Expect = 7e-51
Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 37/210 (17%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
M K V K +VG++ VGK ++S F S
Sbjct: 5 MVKKEVKPIDITATLRCKVAVVGEATVGKSALIS---------MF----------TSKGS 45
Query: 105 KYDDMLAYKTT--------TILLDGKRVKLQLW--DTSGQGRFCTIIRSYSRGAQGILLV 154
K+ Y T + + V ++L+ DT+G + I Y G +LV
Sbjct: 46 KFLK--DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILV 103
Query: 155 YDITNKWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNR-TVTTREAEMYAIKN 209
+D+++ SF+ W + ++ + VLV N+ L R V A+ +A N
Sbjct: 104 FDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN 163
Query: 210 QMAFFEVSPLCD-FNIRESFTELSRRALQR 238
+ FF+VS + F ++ +
Sbjct: 164 TLDFFDVSANPPGKDADAPFLSIATTFYRN 193
Score = 38.4 bits (90), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILS 34
M K V K +VG++ VGK ++S
Sbjct: 5 MVKKEVKPIDITATLRCKVAVVGEATVGKSALIS 38
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 156 bits (397), Expect = 6e-46
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 24/205 (11%)
Query: 56 QYDYLLKFLLVGDSDVGKQEILSG----------------------LYLESRFPRFWLDG 93
+ K +L+G+S VGK I+ + L + +
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 94 SSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILL 153
+ S + + ++ + + +K +WDT+GQ R+ +I+ Y RGA ++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 154 VYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAF 213
V+DI+N + D W+ +++ +LV N++ V E + YA N + F
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKN-KFQVDILEVQKYAQDNNLLF 180
Query: 214 FEVSPLCDFNIRESFTELSRRALQR 238
+ S NI+ F L+ +
Sbjct: 181 IQTSAKTGTNIKNIFYMLAEEIYKN 205
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 150 bits (380), Expect = 1e-43
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 34/205 (16%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY 106
+ + Q Q D + K +LVG+S VGK + F G +
Sbjct: 10 GRENLYFQGQKDGIFKVMLVGESGVGKSTLA------GTF---------------GGLQG 48
Query: 107 DDMLAYKTT--------TILLDGKRVKLQLWDTSGQGRFCTIIRS-YSRGAQGILLVYDI 157
D A++ I++D + V L ++D QG +R + L+V+ +
Sbjct: 49 DS--AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV 106
Query: 158 TNKWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215
T++ SF + L + +P +LVGN+ LA +R V+ E A E
Sbjct: 107 TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIE 166
Query: 216 VSPLCDFNIRESFTELSRRALQRNG 240
S N RE F R+ R G
Sbjct: 167 TSAALHHNTRELFEGAVRQIRLRRG 191
Score = 34.9 bits (81), Expect = 0.022
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 TKPVVATQKQYDYLLKFLLVGDSDVGK 29
+ + Q Q D + K +LVG+S VGK
Sbjct: 10 GRENLYFQGQKDGIFKVMLVGESGVGK 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 146 bits (372), Expect = 2e-42
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 26/195 (13%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----DML 110
K ++VG VGK S L + +F +S F S YD D
Sbjct: 4 PPPSETHKLVVVGGGGVGK----SALTI-----QF-----IQSYFVS---DYDPTIED-- 44
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWL 170
T +DG +L + DT+GQ F + Y R G LLV+ I ++ SF+ + +
Sbjct: 45 -SYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF 103
Query: 171 KEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
++ P VLVGN+ L R V EA + + +A+FE S N+ E+F
Sbjct: 104 TQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163
Query: 229 TELSRRALQRNGMER 243
+L R + E
Sbjct: 164 EQLVRAVRKYQEQEL 178
Score = 30.6 bits (70), Expect = 0.64
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 11 KQYDYLLKFLLVGDSDVGK 29
K ++VG VGK
Sbjct: 4 PPPSETHKLVVVGGGGVGK 22
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 145 bits (368), Expect = 8e-42
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD---- 107
+ L K ++VG VGK S L L +F D E Y+
Sbjct: 10 GGSQNSLALHKVIMVGSGGVGK----SALTL-----QFMYDEFVED--------YEPTKA 52
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
D +Y+ ++LDG+ V++ + DT+GQ + I +Y R +G L V+ IT SF
Sbjct: 53 D--SYRKK-VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA 109
Query: 168 RWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
+ +++ VP +LVGN+ L R V+ EA+ A + + + E S N+
Sbjct: 110 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169
Query: 226 ESFTELSRRALQRNGME 242
+ F +L R R +
Sbjct: 170 KVFFDLMREIRARKMED 186
Score = 32.5 bits (75), Expect = 0.17
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGK 29
+ L K ++VG VGK
Sbjct: 10 GGSQNSLALHKVIMVGSGGVGK 31
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 145 bits (369), Expect = 9e-42
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD---- 107
+ L K ++VG VGK S L L +F F Y+
Sbjct: 6 PKGQNSLALHKVIMVGSGGVGK----SALTL-----QF-----MYDEF---VEDYEPTKA 48
Query: 108 DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGID 167
D +Y+ ++LDG+ V++ + DT+GQ + I +Y R +G L V+ IT SF
Sbjct: 49 D--SYRKK-VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA 105
Query: 168 RWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIR 225
+ +++ VP +LVGN+ L R V+ EA+ A + + + E S N+
Sbjct: 106 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165
Query: 226 ESFTELSRRALQRNGMERLWRSNKVGRKP 254
+ F +L R R + ++ K RK
Sbjct: 166 KVFFDLMREIRARKMEDSKEKNGKKKRKS 194
Score = 32.6 bits (75), Expect = 0.17
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGK 29
+ L K ++VG VGK
Sbjct: 6 PKGQNSLALHKVIMVGSGGVGK 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 144 bits (365), Expect = 2e-41
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 33/204 (16%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCS 101
+ + A + K ++VGD VGK S L + + F
Sbjct: 3 LGSMATSAVPSENLPTYKLVVVGDGGVGK----SALTIQFFQKIF--------------- 43
Query: 102 GSGKYD----DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDI 157
YD D +D + L + DT+GQ F + Y R G L+VY +
Sbjct: 44 -VDDYDPTIED---SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 158 TNKWSFDGIDRWLKEVEEHAP--GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215
T+K SF+ +DR+ + + P +LV N++ L R VT + + A K + + E
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159
Query: 216 VS-PLCDFNIRESFTELSRRALQR 238
S N+ ++F +L R Q+
Sbjct: 160 TSAKDPPLNVDKTFHDLVRVIRQQ 183
Score = 30.6 bits (70), Expect = 0.57
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 1 METKPVVATQKQYDYLLKFLLVGDSDVGK 29
+ + A + K ++VGD VGK
Sbjct: 3 LGSMATSAVPSENLPTYKLVVVGDGGVGK 31
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 141 bits (358), Expect = 2e-40
Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 41/197 (20%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT----- 115
+K ++VG++ GK +L + + K D+ T
Sbjct: 3 MKLMIVGNTGSGKTTLLQ------QLMK---------------TKKSDLGMQSATVGIDV 41
Query: 116 ---TILLDGKR---VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS-FDGIDR 168
I + KR + L +WD +G+ F + + L VYD++ + D +
Sbjct: 42 KDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKP 101
Query: 169 WLKEVEEHAPGVPKVLVGNRLHLAFNR---TVTTREAEMYAIKNQM-----AFFEVSPLC 220
WL ++ A P +LVG L ++ + ++ + K F +
Sbjct: 102 WLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161
Query: 221 DFNIRESFTELSRRALQ 237
+ + + +L
Sbjct: 162 SDALAKLRKTIINESLN 178
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 140 bits (356), Expect = 3e-40
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 22/184 (11%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKTTTI 117
+ K +LVG+S VGK + F G ++ + I
Sbjct: 2 VFKVMLVGESGVGKSTLAG---------TFGGL--------QGDHAHEMENSEDTYERRI 44
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRS-YSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
++D + V L ++D QG ++ + L+V+ +T++ SF + L +
Sbjct: 45 MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG 104
Query: 177 --APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+P +LVGN+ LA +R V+ E A E S N RE F R+
Sbjct: 105 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 164
Query: 235 ALQR 238
R
Sbjct: 165 IRLR 168
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 141 bits (357), Expect = 4e-40
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD-- 107
+ + + ++ G VGK S L +++ F Y
Sbjct: 1 SMPEQSNDYRVVVFGAGGVGK----SSLVLRFVKGTF----------------RDTYIPT 40
Query: 108 --DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDG 165
D Y+ I D LQ+ DT+G +F + R +LV+ +T+K S +
Sbjct: 41 IED--TYRQV-ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE 97
Query: 166 IDRWLKEVEEH---APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDF 222
+ K + + +P +LVGN+ R V TREA+ A + + AF E S ++
Sbjct: 98 LGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNY 156
Query: 223 NIRESFTELSRRALQRNGMERLWRSNKVGRKP 254
N++E F EL +RN + +K
Sbjct: 157 NVKELFQELLTLETRRNMSLNIDGKRSGKQKR 188
Score = 29.5 bits (67), Expect = 1.5
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 9 TQKQYDYLLKFLLVGDSDVGK 29
+ + + ++ G VGK
Sbjct: 1 SMPEQSNDYRVVVFGAGGVGK 21
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 139 bits (352), Expect = 9e-40
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 62 KFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKT 114
+ + G VGK S L +++ F Y D Y+
Sbjct: 5 RVAVFGAGGVGK----SSLVLRFVKGTF----------------RESYIPTVEDT--YRQ 42
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
I D LQ+ DT+G +F + R +LVY IT++ S + + +++
Sbjct: 43 V-ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101
Query: 175 EHA---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
E +P +LVGN+ + +R V + EAE A + AF E S + N++E F EL
Sbjct: 102 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
Query: 232 SRRALQRN 239
+R
Sbjct: 162 LNLEKRRT 169
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 138 bits (350), Expect = 2e-39
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 31/187 (16%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDM------LAYKTT 115
K +L+G++ VGK I+ RF + + A+ T
Sbjct: 5 KLVLLGEAAVGKSSIVL------RFVS---------------NDFAENKEPTIGAAFLTQ 43
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+ ++ VK ++WDT+GQ RF ++ Y R AQ L+VYD+T SF W+KE+ E
Sbjct: 44 RVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103
Query: 176 HA-PGVPKVLVGNRL---HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
A + LVGN++ R V E E A + + FFE S N+ + F +
Sbjct: 104 QASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
Query: 232 SRRALQR 238
+ +
Sbjct: 164 GEKIPLK 170
Score = 27.1 bits (60), Expect = 9.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 18 KFLLVGDSDVGKQEILS 34
K +L+G++ VGK I+
Sbjct: 5 KLVLLGEAAVGKSSIVL 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 137 bits (348), Expect = 4e-39
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKTT 115
+ K LL+G VGK + F Y +
Sbjct: 2 VYKVLLLGAPGVGKSALAR------IFGGVEDG------------PEAEAAGH--TYDRS 41
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
I++DG+ L ++D Q + ++VY +T+K SF+ ++
Sbjct: 42 -IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR 100
Query: 176 H--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
VP +LVGN+ L +R V+ E A+ F E S N++ F + R
Sbjct: 101 ARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 137 bits (347), Expect = 6e-39
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKTT 115
L K ++VG VGK S L L +F F Y+ D +Y+
Sbjct: 4 LHKVIMVGSGGVGK----SALTL-----QF-----MYDEF---VEDYEPTKAD--SYRKK 44
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
++LDG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++
Sbjct: 45 -VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 103
Query: 176 H--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 104 VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
Query: 234 RALQR 238
R
Sbjct: 164 EIRAR 168
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 136 bits (344), Expect = 2e-38
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD--- 107
+ K ++G VGK S L ++E +F YD
Sbjct: 2 PQSKSR--KIAILGYRSVGK----SSLTIQFVEGQF----------------VDSYDPTI 39
Query: 108 -DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI 166
+ + I ++G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I
Sbjct: 40 EN--TFTKL-ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI 96
Query: 167 DRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNI 224
++ + +P +LVGN+ L R ++ E + A AF E S +
Sbjct: 97 KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 156
Query: 225 RESFTELSRRALQRNG 240
+ F + A + +G
Sbjct: 157 VDVFRRIILEAEKMDG 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 135 bits (342), Expect = 2e-38
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 32/181 (17%)
Query: 62 KFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKT 114
K +++G VGK S L ++ F KYD D +
Sbjct: 5 KVVVLGSGGVGK----SALTVQFVTGTF----------------IEKYDPTIED---FYR 41
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
I +D L++ DT+G +F ++ Y + QG +LVY + N+ SF I ++
Sbjct: 42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 175 EH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
VP +LVGN++ L R V++ E A + F E S + E F E+
Sbjct: 102 RVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
Query: 233 R 233
R
Sbjct: 162 R 162
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 134 bits (340), Expect = 5e-38
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKTTTI 117
K ++VG VGK S L + + ++ F + D D +Y+ +
Sbjct: 5 KLVVVGAGGVGK----SALTI-----QL-----IQNHF---VDECDPTIED--SYRKQ-V 44
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104
Query: 178 --PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
VP VLVGN+ LA RTV +R+A+ A + + E S + ++F L R
Sbjct: 105 DSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 135 bits (342), Expect = 6e-38
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 26/200 (13%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY 106
+ + K +++G VGK + L +F E F Y
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGK----TSLAH-----QF-----VEGEFSE---GY 53
Query: 107 D----DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWS 162
D + Y + L L L DT+GQ + + S+ G G +LVY +T+ S
Sbjct: 54 DPTVEN--TYSKI-VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS 110
Query: 163 FDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC 220
F I+ +++ E VP VLVGN+ L+ R V E + A F E S
Sbjct: 111 FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE 170
Query: 221 DFNIRESFTELSRRALQRNG 240
+ + FT++ + +
Sbjct: 171 NQLTQGIFTKVIQEIARVEN 190
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 133 bits (338), Expect = 2e-37
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 35/201 (17%)
Query: 48 KPVVATQKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSG 104
+ + Q +Y K ++VG VGK S L +++ F
Sbjct: 11 RENLYFQGMTEY--KLVVVGAGGVGK----SALTIQLIQNHF----------------VD 48
Query: 105 KYD----DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
+YD D +Y+ +++DG+ L + DT+GQ + + Y R +G L V+ I N
Sbjct: 49 EYDPTIED--SYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS 105
Query: 161 WSFDGIDRWLKEVEEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSP 218
SF I+ + ++++ VP VLVGN+ L RTV T++A A + F E S
Sbjct: 106 KSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSA 164
Query: 219 LCDFNIRESFTELSRRALQRN 239
+ ++F L R Q
Sbjct: 165 KTRQGVEDAFYTLVREIRQYR 185
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 133 bits (338), Expect = 2e-37
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 62 KFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKT 114
K ++VG VGK S L +++ F +YD D +Y+
Sbjct: 6 KLVVVGADGVGK----SALTIQLIQNHF----------------VDEYDPTIED--SYRK 43
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
+++DG+ L + DT+GQ + + Y R +G L V+ I N SF+ I + ++++
Sbjct: 44 Q-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 175 EHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELS 232
VP VLVGN+ L +RTV T++A+ A + F E S + ++F L
Sbjct: 103 RVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 233 RRALQRNG 240
R +
Sbjct: 162 REIRKHKE 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 134 bits (339), Expect = 3e-37
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 29/192 (15%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD--- 107
V + + + + +L+G+ VGK + + F S +
Sbjct: 28 VISSESGNTYYRVVLIGEQGVGKSTLAN------IFAG------VHDSMDS---DCEVLG 72
Query: 108 -DMLAYKTTTILLDGKR---VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSF 163
D T+++DG+ + L +W+ G+ + + + L+VY IT++ SF
Sbjct: 73 ED---TYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF 127
Query: 164 DGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCD 221
+ ++ +P +LVGN+ L R V+ E A+ F E S
Sbjct: 128 EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187
Query: 222 FNIRESFTELSR 233
N++E F + R
Sbjct: 188 HNVKELFEGIVR 199
Score = 31.5 bits (72), Expect = 0.31
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 7 VATQKQYDYLLKFLLVGDSDVGK 29
V + + + + +L+G+ VGK
Sbjct: 28 VISSESGNTYYRVVLIGEQGVGK 50
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 141 bits (356), Expect = 4e-37
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 10/181 (5%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
+ +K L+GD GK +L L + F ES + K
Sbjct: 38 HLQEIKVHLIGDGMAGKTSLLKQL-IGETFDP------KESQTHGLNVVTKQAPNIKGLE 90
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ K WD GQ + + + +L+ D + WL+ +E++
Sbjct: 91 NDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKY 147
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRAL 236
P ++V N++ + + ++ + F +S + L L
Sbjct: 148 GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207
Query: 237 Q 237
Sbjct: 208 H 208
Score = 28.4 bits (63), Expect = 5.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYK 37
+ +K L+GD GK +L
Sbjct: 38 HLQEIKVHLIGDGMAGKTSLLKQLI 62
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 131 bits (331), Expect = 2e-36
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGS 103
T+ + +K + G + VGK S L +L RF
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGK----SALVVRFLTKRF----------------I 54
Query: 104 GKYD----DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN 159
+YD Y+ +D + V +++ DT+GQ + R +G +LVYDIT+
Sbjct: 55 WEYDPTLES--TYRHQ-ATIDDEVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITD 110
Query: 160 KWSFDGIDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS 217
+ SF+ + ++E V +LVGN+ L +R V+T E E A + AF+E S
Sbjct: 111 RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECS 170
Query: 218 -PLCDFNIRESFTELSRRALQRNGME 242
+ NI E F EL R +R ++
Sbjct: 171 ACTGEGNITEIFYELCREVRRRRMVQ 196
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 129 bits (326), Expect = 8e-36
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 28/182 (15%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKTT 115
L + +L+GD VGK + S F + ++ D
Sbjct: 4 LYRVVLLGDPGVGKTSLAS---------LFAGKQERDL--------HEQLGED---VYER 43
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTII--RSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
T+ +DG+ L + DT + S +G ++VY I ++ SF+ ++
Sbjct: 44 TLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL 103
Query: 174 EEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
A VP +LVGN+ LA R V+ E A+ F E S N+ E F +
Sbjct: 104 RRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163
Query: 232 SR 233
R
Sbjct: 164 VR 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 127 bits (321), Expect = 3e-35
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 33/182 (18%)
Query: 62 KFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYD----DMLAYKT 114
K +++G VGK S L +++ F KYD D +Y+
Sbjct: 5 KLVVLGSGGVGK----SALTVQFVQGIF----------------VEKYDPTIED--SYRK 42
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
+ +D ++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 43 Q-VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 175 EH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTEL 231
VP +LVGN+ L R V + + A + AF E S N+ E F +L
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 232 SR 233
R
Sbjct: 162 VR 163
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 127 bits (322), Expect = 3e-35
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 38/199 (19%)
Query: 47 TKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGS 103
+ + Q + ++G GK S L +L RF
Sbjct: 10 GRENLYFQGPLEV--NLAILGRRGAGK----SALTVKFLTKRF----------------I 47
Query: 104 GKYD----DMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN 159
+YD D Y + +D + V L++ DT+ Y A L+VY + +
Sbjct: 48 SEYDPNLED--TYSSE-ETVDHQPVHLRVMDTADLDTP-RNCERYLNWAHAFLVVYSVDS 103
Query: 160 KWSFDGIDRWLKEVEEHA----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFE 215
+ SFD +L+ + HA +P +L+GN+L +A R VT E A + FFE
Sbjct: 104 RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFE 163
Query: 216 VSPLCDF-NIRESFTELSR 233
VS DF +++ F E R
Sbjct: 164 VSACLDFEHVQHVFHEAVR 182
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 126 bits (318), Expect = 1e-34
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 45/193 (23%)
Query: 61 LKFLLVGDSDVGKQEILSGL---YLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT-- 115
LK +VG+ GK S L YL + +
Sbjct: 21 LKVGIVGNLSSGK----SALVHRYLTGTY--------VQE--------------ESPEGG 54
Query: 116 ----TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLK 171
I++DG+ L + D G ++ ++ V+ + ++ SF + +
Sbjct: 55 RFKKEIVVDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFL 109
Query: 172 EVEEHAPG--VPKVLVGNR--LHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRE 226
+ VP VLVG + + A R + A + + ++E N+
Sbjct: 110 RLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVER 169
Query: 227 SFTELSRRALQRN 239
F +++++ +
Sbjct: 170 VFQDVAQKVVALR 182
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 123 bits (312), Expect = 1e-33
Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 37/210 (17%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
+ +L+G+ VGK + + F +G +D M +
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLAN---------IF-------------AGVHDSMDSDXEVL 40
Query: 117 I--------LLDGKR---VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDG 165
++DG+ + L +W+ G+ + + + L+VY IT++ SF+
Sbjct: 41 GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 98
Query: 166 IDRWLKEVEEH--APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
++ +P +LVGN+ L R V+ E A+ F E S N
Sbjct: 99 ASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
Query: 224 IRESFTELSRRALQRNGMERLWRSNKVGRK 253
++E F + R+ R + +K
Sbjct: 159 VKELFEGIVRQVRLRRDSKEKNERRLAYQK 188
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 118 bits (298), Expect = 7e-32
Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 43/199 (21%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT---- 115
L+ ++GD+ GK S L RF +G Y + T
Sbjct: 7 ELRLGVLGDARSGK----SSLIH--RFL---------------TGSYQV---LEKTESEQ 42
Query: 116 ---TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE 172
+L+DG+ + + + +G +S A ++ V+ + ++ SF + R +
Sbjct: 43 YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQ 97
Query: 173 VEEHAP----GVPKVLVG--NRLHLAFNRTVTTREA-EMYAIKNQMAFFEVSPLCDFNIR 225
+ G+ LVG +R+ + R V A + A + +++E N+
Sbjct: 98 LSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157
Query: 226 ESFTELSRRALQRNGMERL 244
F E++++ + ++L
Sbjct: 158 RVFQEVAQKVVTLRKQQQL 176
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 116 bits (292), Expect = 9e-31
Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 34/199 (17%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+ LK ++VGD VGK +L + + P A
Sbjct: 15 GKIENGKKALKIVVVGDGAVGKTCLLLA-FSKGEIPT----------------------A 51
Query: 112 YKTT-------TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
Y T + + L LWDT+GQ + + + +LL + + N+ SFD
Sbjct: 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
Query: 165 GI-DRWLKEVEEHAPGVPKVLVGNRLHLAFN--RTVTTREAEMYAIK-NQMAFFEVSPLC 220
I +W E++ + VLVG ++ L + VT +E + K +A+ E S +
Sbjct: 112 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171
Query: 221 DFNIRESFTELSRRALQRN 239
+ E F +
Sbjct: 172 KIGLNEVFEKSVDCIFSNK 190
Score = 28.5 bits (64), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 8 ATQKQYDYLLKFLLVGDSDVGK 29
+ LK ++VGD VGK
Sbjct: 15 GKIENGKKALKIVVVGDGAVGK 36
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 105 bits (264), Expect = 6e-27
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 38/194 (19%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKY-----DDMLAYKTT 115
+K + VGD VGK +L Y + FP Y D+ A
Sbjct: 9 IKCVTVGDGAVGKTCLLI-SYTSNTFPT----------------DYVPTVFDNFSANVV- 50
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVE 174
++G V L LWDT+GQ + + RGA +L + + +K S++ + +W+ E++
Sbjct: 51 ---VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107
Query: 175 EHAPGVPKVLVGN----------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFN 223
+APGVP VLVG + +TT + E A+ E S N
Sbjct: 108 HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Query: 224 IRESFTELSRRALQ 237
++ F R LQ
Sbjct: 168 VKGVFDAAIRVVLQ 181
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 105 bits (264), Expect = 1e-26
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 53 TQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD----D 108
+ +K + VGD VGK +L Y ++FP Y D
Sbjct: 2 SHMSVSKFIKCVTVGDGAVGKTCMLIC-YTSNKFP----------------TDYIPTVFD 44
Query: 109 MLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYS-RGAQGILLVYDITNKWSFDGI- 166
+ + + +DG+ V L LWDT+GQ + + +R S RGA +L + + +K S++ +
Sbjct: 45 --NF-SANVAVDGQIVNLGLWDTAGQEDY-SRLRPLSYRGADIFVLAFSLISKASYENVL 100
Query: 167 DRWLKEVEEHAPGVPKVLVGNRLHLAFN--------RTVTTREAEMYAIK-NQMAFFEVS 217
+W+ E+ AP VP VLVG +L L + +T+ + E + A+ E S
Sbjct: 101 KKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160
Query: 218 PLCDFNIRESFTELSRRALQRNGMERLWRSNKVGRK 253
N++ F + LQ + + R K R+
Sbjct: 161 SKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRR 196
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 105 bits (264), Expect = 1e-26
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 44/198 (22%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT----- 115
+K +LVGD GK +L ++ + FP +Y T
Sbjct: 35 VKVVLVGDGGCGKTSLLM-VFADGAFPE----------------------SYTPTVFERY 71
Query: 116 --TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE 172
+ + GK V L +WDT+GQ + + + A +LL +D+T+ SFD I +RW E
Sbjct: 72 MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 173 VEEHAPGVPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPL 219
V VP ++VG +L VT + A +A+ E S
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 220 CDFNIRESFTELSRRALQ 237
N+ F E + AL
Sbjct: 192 LHDNVHAVFQEAAEVALS 209
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 102 bits (255), Expect = 1e-25
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 44/199 (22%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT----- 115
K ++VGD GK +L ++ + FP Y T
Sbjct: 26 KKLVVVGDGACGKTCLLI-VFSKDEFPE----------------------VYVPTVFENY 62
Query: 116 --TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE 172
I +DGK+V+L LWDT+GQ + + IL+ + + + S + I ++W+ E
Sbjct: 63 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE 122
Query: 173 VEEHAPGVPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPL 219
V+ P VP +LV N L V T + A++ + E S
Sbjct: 123 VKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182
Query: 220 CDFNIRESFTELSRRALQR 238
+RE F +R ALQ+
Sbjct: 183 TKEGVREVFETATRAALQK 201
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 101 bits (254), Expect = 2e-25
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 32/198 (16%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYD-DMLAYK 113
K ++VGD GK +L ++ + +FP Y +
Sbjct: 20 HMAAIRKKLVIVGDGACGKTCLLI-VFSKDQFPE----------------VYVPTVFENY 62
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE 172
I +DGK+V+L LWDT+GQ + + IL+ + I + S + I ++W E
Sbjct: 63 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 122
Query: 173 VEEHAPGVPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPL 219
V+ P VP +LVGN L V + E A + + + E S
Sbjct: 123 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
Query: 220 CDFNIRESFTELSRRALQ 237
+RE F +R LQ
Sbjct: 183 TKEGVREVFEMATRAGLQ 200
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 98.7 bits (246), Expect = 2e-24
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 30/191 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y + FP ++ ++ + +++D
Sbjct: 6 IKCVVVGDGAVGKTCLLI-SYTTNAFPGEYIPTVFDN---------------YSANVMVD 49
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
GK V L LWDT+GQ + + L+ + + + SF+ + +W EV H P
Sbjct: 50 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN 109
Query: 180 VPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRE 226
P +LVG +L +T + A + + + E S L ++
Sbjct: 110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169
Query: 227 SFTELSRRALQ 237
F E R L
Sbjct: 170 VFDEAIRAVLC 180
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 97.5 bits (243), Expect = 8e-24
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 44/197 (22%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT----- 115
+K ++VGD VGK +L Y + FP Y T
Sbjct: 31 IKCVVVGDGAVGKTCLLIS-YTTNAFPG----------------------EYIPTVFDNY 67
Query: 116 --TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE 172
+++DGK V L LWDT+GQ + + L+ + + + SF+ + +W E
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE 127
Query: 173 VEEHAPGVPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPL 219
V H P P +LVG +L +T + A + + + E S L
Sbjct: 128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187
Query: 220 CDFNIRESFTELSRRAL 236
++ F E R L
Sbjct: 188 TQRGLKTVFDEAIRAVL 204
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 96.7 bits (241), Expect = 9e-24
Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 31/193 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K ++VGDS GK +L ++ + FP + P +++ A +D
Sbjct: 8 CKIVVVGDSQCGKTALLH-VFAKDCFPE------NYVPTV-----FENYTASFE----ID 51
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
+R++L LWDTSG + + + +L+ +DI+ + D + +W E++E P
Sbjct: 52 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN 111
Query: 180 VPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCD-FNIR 225
+LVG L V+ + A + + E S L ++R
Sbjct: 112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 171
Query: 226 ESFTELSRRALQR 238
+ F + + +
Sbjct: 172 DIFHVATLACVNK 184
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 96.4 bits (240), Expect = 1e-23
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 30/200 (15%)
Query: 52 ATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA 111
+LK ++VGD VGK +L Y FP P +D
Sbjct: 10 MAHGPGALMLKCVVVGDGAVGKTCLLM-SYANDAFP------EEYVPTV-----FDHYAV 57
Query: 112 YKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWL 170
T + GK+ L L+DT+GQ + + L+ + + N SF + + W+
Sbjct: 58 SVT----VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWV 113
Query: 171 KEVEEHAPGVPKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVS 217
E++E+AP VP +L+G ++ L + + + + + A + + E S
Sbjct: 114 PELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173
Query: 218 PLCDFNIRESFTELSRRALQ 237
L ++ F E L
Sbjct: 174 ALTQKGLKTVFDEAIIAILT 193
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 96.0 bits (239), Expect = 3e-23
Identities = 40/203 (19%), Positives = 78/203 (38%), Gaps = 31/203 (15%)
Query: 51 VATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML 110
+ K ++VGDS GK +L ++ + FP + P +++
Sbjct: 19 SHMDPNQNVKCKIVVVGDSQCGKTALLH-VFAKDCFPE------NYVPTV-----FENYT 66
Query: 111 AYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRW 169
A +D +R++L LWDTSG + + + +L+ +DI+ + D + +W
Sbjct: 67 ASFE----IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122
Query: 170 LKEVEEHAPGVPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEV 216
E++E P +LVG L V+ + A + + E
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182
Query: 217 SPLCD-FNIRESFTELSRRALQR 238
S L ++R+ F + + +
Sbjct: 183 SALQSENSVRDIFHVATLACVNK 205
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 94.0 bits (234), Expect = 1e-22
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K +LVGD VGK ++ Y + +P ++ + ++ + + + +D
Sbjct: 21 VKCVLVGDGAVGKTSLVV-SYTTNGYPTEYIPTAFDN--------------F-SAVVSVD 64
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
G+ V+LQL DT+GQ F + LL + + + SF + ++W+ E+ H P
Sbjct: 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK 124
Query: 180 VPKVLVGN------------RLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRE 226
P +LVG L + V A++ A + ++ E S L N++E
Sbjct: 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184
Query: 227 SFTELSRRALQRNGMER 243
F +Q + ++
Sbjct: 185 VFDAAIVAGIQYSDTQQ 201
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 94.2 bits (234), Expect = 1e-22
Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 31/193 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K +LVGD GK +L + + +P ++ +++ A +
Sbjct: 28 CKLVLVGDVQCGKTAMLQ-VLAKDCYPETYV-----------PTVFENYTACLE----TE 71
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEEHAPG 179
+RV+L LWDTSG + + + +LL +DI+ + D +W E+ ++ P
Sbjct: 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS 131
Query: 180 VPKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVSPL-CDFNIR 225
+L+G + L + ++ + A + + E S + +I
Sbjct: 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191
Query: 226 ESFTELSRRALQR 238
F S L +
Sbjct: 192 SIFRTASMLCLNK 204
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 82.0 bits (202), Expect = 2e-17
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKE 172
+ +++DGK V L LWDT+G + + L+ + + + SF + +W E
Sbjct: 193 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE 252
Query: 173 VEEHAPGVPKVLVGNRLHLAFNRT------------VTTREAEMYAIK-NQMAFFEVSPL 219
V H P P +LVG +L L ++ +T + A + + + E S L
Sbjct: 253 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312
Query: 220 CDFNIRESFTELSRRALQ 237
++ F E R L
Sbjct: 313 TQRGLKTVFDEAIRAVLC 330
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 75.8 bits (186), Expect = 1e-15
Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 64/224 (28%)
Query: 67 GDSDVGKQEILSGLYLESRFPRFWLDG--------SSESPFCSGSGKYDDMLAY-KTTTI 117
G +GK + + RF R D S S F D L + + +
Sbjct: 35 GQCGIGKSCLCN------RFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRS 88
Query: 118 LLDGKRVKLQLW-------DTSGQGRFCTIIRSYSRGA---------------------- 148
L D K+ + D + Q T ++ Y + A
Sbjct: 89 LEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLE 148
Query: 149 ---------------QGILLVYDITNKW--SFDGIDRWLKEVEEHAPG--VPKVLVGNRL 189
G LL D++ +FD +++ + P V+V +
Sbjct: 149 QDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKC 208
Query: 190 HLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
R + + KN + E S + N+ +F+ L +
Sbjct: 209 DEGVERYIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQ 251
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 57.4 bits (139), Expect = 7e-10
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 19/188 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL- 119
K + G GK L +Y + + + S + + + L + + +
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSK-------VPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 120 --DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDIT------NKWSFDGIDRWLK 171
G + + L+ GQ + + RG GI+ V D N S + L
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 172 EVEEHAPGVPKVLVGNRLHLAFNRTVTTRE-AEMYAIKNQMAFFEVSPLCDFNIRESFTE 230
E VP V+ N+ L + + + + E + E+ E
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKE 185
Query: 231 LSRRALQR 238
+SR L R
Sbjct: 186 VSRLVLAR 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-08
Identities = 80/467 (17%), Positives = 135/467 (28%), Gaps = 162/467 (34%)
Query: 32 ILSGYKLELTAWLMETKP-VVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFW 90
LS LE L+ T +A+Q Q + + E + L +F +
Sbjct: 10 TLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 91 LDGSSESPFCSGSGKYDDMLAYKTTTIL-------LDGKRV-----KLQLWDTSGQGRFC 138
+ E S G++D +L L L+G + KL + + +
Sbjct: 68 VSSLVEP---SKVGQFDQVLN----LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVT 198
+I++Y + + ++ A R V
Sbjct: 121 ELIKNYITARI-------MAKR----------PFDKKSNS-------------ALFRAVG 150
Query: 199 TREAEMYAIKNQMAFFEVSPLCDF----NIRESFTELSRRALQRNGMERLWRSNKVGRKP 254
A++ AI F N + F EL R+ L+++ V
Sbjct: 151 EGNAQLVAI--------------FGGQGNTDDYFEEL------RD----LYQTYHVLVGD 186
Query: 255 LINF--ESFTELSRRALQRN-----GME-RLWRSNKGKHLLTYFQYCFAGLVRPSVDVNK 306
LI F E+ +EL R L G+ W N P D
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN--------------TPDKD--- 229
Query: 307 NKYNLL----SFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTSYTT--- 359
Y LL S +I + +L + A+ + P ++S+LK T ++
Sbjct: 230 --Y-LLSIPISCPLIGVIQLAHYVVTAKLLGFT------PGELRSYLK--GATGHSQGLV 278
Query: 360 ------MTMT-TSARQHTKK---------LRFPSAQSTHSLLDTPSPSAATASLVSCGTG 403
T + S +K +R + P PS S + G
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVR---CYEAYPNTSLP-PSILEDS-LENNEG 333
Query: 404 GASS-ASVK-VSHSQKSKH----------SSCV------GRNSCVVS 432
S S+ ++ Q + V G + VVS
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Score = 43.5 bits (102), Expect = 1e-04
Identities = 80/557 (14%), Positives = 146/557 (26%), Gaps = 214/557 (38%)
Query: 6 VVATQKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLM-----ETKPVVATQKQYDYL 60
+A+Q Q + + E + EL + +P + Q+D +
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTT--PAELVGKFLGYVSSLVEP--SKVGQFDQV 83
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPR--------FWLDGSSESPFCSGSGKYDDMLAY 112
L L E+ + L +++ + + Y
Sbjct: 84 LNLCLT--------------EFENCYLEGNDIHALAAKLLQENDTTLVK---TKELIKNY 126
Query: 113 KTTTILLDGKRVKLQ---LWD--TSGQGRFCTIIRSYSRGAQGIL------L--VYDI-- 157
T I+ K L+ G + I G QG L +Y
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNTDDYFEELRDLYQTYH 181
Query: 158 -----------------------TNKWSFDGID--RWLKEVEEHAPGVP----------- 181
K G++ WL+ + P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-PSNTPDKDYLLSIPISCPL 240
Query: 182 -------------KVL---VGN-RLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNI 224
K+L G R +L + T + +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYL---KGATGHSQGLVT----AVAIAETD-----S 288
Query: 225 RESFTELSRRALQRNGMERL----WRSNKVGRKPLINFE-------------------SF 261
ESF R+A+ L R + P + S
Sbjct: 289 WESFFVSVRKAI-----TVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 262 TELSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSVISLQE 321
+ L++ +Q + + ++N HL Q V S+ VN K ++S SL
Sbjct: 342 SNLTQEQVQ----DYVNKTNS--HLPAGKQ------VEISL-VNGAKNLVVSGPPQSLYG 388
Query: 322 LC--CRAIVARTTVYAINQ--LP------------LPNLIKS--HLKSYAMTSYTTMTMT 363
L R A + ++Q +P LP + S H S+ + + +
Sbjct: 389 LNLTLRKAKAPS---GLDQSRIPFSERKLKFSNRFLP--VASPFH--SHLLVPASDLINK 441
Query: 364 TSARQ----HTKKLRFP-------------SAQSTHSLLDT--------PSPSAATAS-L 397
+ + K ++ P S + ++D + + A+ +
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 398 VSCGTGGASSASVKVSH 414
+ G GGAS V
Sbjct: 502 LDFGPGGASGLGVLTHR 518
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 44.5 bits (105), Expect = 2e-05
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 308 KYNLLSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352
L+ SLQ +C I TT I+ LP+P+ +K +LK Y
Sbjct: 128 STPLIRTFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEY 172
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 42.3 bits (99), Expect = 9e-05
Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 31/142 (21%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+ LL+G GK I ++ ++ L +
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVF--------------------HKMSPNETLFLE 53
Query: 114 TTT-----ILLDGKRVKLQLWDTSGQGRFCTI---IRSYSRGAQGILLVYDITNKW--SF 163
+T + + V Q+WD GQ F RG ++ V D + + +
Sbjct: 54 STNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEAL 113
Query: 164 DGIDRWLKEVEEHAPGVPKVLV 185
+ + + + P + V
Sbjct: 114 TRLHITVSKAYKVNPDM-NFEV 134
Score = 27.2 bits (60), Expect = 9.2
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 7/80 (8%)
Query: 10 QKQYDYLLKFLLVGDSDVGK----QEILSGYKLELTAWLMETKPVVATQKQYDYLLKFLL 65
+ LL+G GK + + T +L T + + F +
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQI 73
Query: 66 VGDSDVGKQEILSGLYLESR 85
D Q +
Sbjct: 74 W---DFPGQMDFFDPTFDYE 90
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 312 LSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352
L S SLQ LC I AI LPLP +K +L+ Y
Sbjct: 127 LYTSAPSLQHLCRLTI--NKCTGAIWGLPLPTRLKDYLEEY 165
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 5/122 (4%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPG 179
K + +WD GQ + + R Y + QG++ V D ++ L+++ E+
Sbjct: 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130
Query: 180 VPKVLVGNR--LHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTELSRRAL 236
++ N+ + A + T + + +++ + + LS
Sbjct: 131 AVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
Query: 237 QR 238
+R
Sbjct: 191 KR 192
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 37.9 bits (89), Expect = 0.003
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPG 179
V ++LWD GQ RF ++ Y RG I+ + D ++ + L + + G
Sbjct: 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG 124
Query: 180 VPKVLV 185
+P VLV
Sbjct: 125 IP-VLV 129
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 37.5 bits (88), Expect = 0.003
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K +K Q+WD G R Y ++ V D ++
Sbjct: 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR 87
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 37.2 bits (87), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
K +KL +WD GQ R Y ++ V D T+K
Sbjct: 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 38.1 bits (88), Expect = 0.004
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 26/110 (23%)
Query: 101 SGSGK-------YDDMLAYKTTTI----------LLDGKRVKLQLWDTSGQGRFC----- 138
SGSGK + + A+ T + L + L LWD GQ F
Sbjct: 12 SGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFT 71
Query: 139 TIIRSYSRGAQGILLVYDITNKWSFDGIDRW---LKEVEEHAPGVPKVLV 185
+ Q ++ V+D+ + I+ + LK++ +++P K+ V
Sbjct: 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFV 120
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 36.9 bits (86), Expect = 0.005
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSF----DGIDRWLKEVEEHA 177
+ ++D SGQGR+ + Y + Q I+ V D +++ + +D L +
Sbjct: 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124
Query: 178 PGVPKVLV 185
+P +L
Sbjct: 125 RRIP-ILF 131
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 36.8 bits (86), Expect = 0.005
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.0 bits (86), Expect = 0.006
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 17/75 (22%)
Query: 122 KRVKLQLWDTSGQGRF-CTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV------- 173
+ L L D G ++ + A+ ++ V D R +K+V
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA------FQREVKDVAEFLYQV 105
Query: 174 ---EEHAPGVPKVLV 185
P +L+
Sbjct: 106 LIDSMALKNSPSLLI 120
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 36.5 bits (85), Expect = 0.007
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + ++WD GQ R Y ++ V D T++
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDR 102
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 36.5 bits (85), Expect = 0.007
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ +WD GQ + +Y + +++V D T++
Sbjct: 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 36.5 bits (85), Expect = 0.007
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPG 179
+ KL +WD GQ + R+Y G++ V D ++ R L+ + EE G
Sbjct: 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 119
Query: 180 VPKVLV 185
+L+
Sbjct: 120 AT-LLI 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 36.0 bits (84), Expect = 0.010
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYD 156
+K +D G + + + Y GI+ + D
Sbjct: 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 35.3 bits (82), Expect = 0.016
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYD 156
+ +WD GQ + +Y + +++V D
Sbjct: 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.020
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHAPG 179
+ KL +WD GQ + RSY ++ V D ++ F+ + L E+ EE
Sbjct: 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117
Query: 180 VPKVLV 185
VP VL+
Sbjct: 118 VP-VLI 122
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 34.9 bits (81), Expect = 0.028
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
+ +D G + + ++Y GI+ + D +
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADH 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 34.9 bits (80), Expect = 0.042
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNK 160
K + +WD GQ + + R Y + QG++ V D ++
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 33.3 bits (76), Expect = 0.17
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYD 156
K VK +WD GQ + + R Y G QG++ V D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.21
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 11/35 (31%)
Query: 367 RQHTKKLRFPSAQSTHSL-LDTP--SPS-AATASL 397
+Q KKL Q+ SL L +P+ A A++
Sbjct: 19 KQALKKL-----QA--SLKLYADDSAPALAIKATM 46
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor
suppressor, oxygen sensing, transcription; 1.85A {Homo
sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Length = 160
Score = 31.3 bits (70), Expect = 0.28
Identities = 8/59 (13%), Positives = 21/59 (35%)
Query: 313 SFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTSYTTMTMTTSARQHTK 371
+ V +L+E C + + + +L + + L+ + +T H +
Sbjct: 99 TLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQR 157
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.0 bits (71), Expect = 0.47
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 24/92 (26%)
Query: 114 TT------TILLDGKRVKLQLWDTSG----------QGRFCTIIRSYS--RGAQGILLVY 155
TT I +DG + L + DT+G G I R++ A +L +
Sbjct: 38 TTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIG----IERAWQEIEQADRVLFMV 91
Query: 156 DITNKWSFDGIDRWLKEVEEHAPGVPKVLVGN 187
D T + D + W + + +P +V N
Sbjct: 92 DGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 123
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation,
feedback inhibition, selectivity, specificity,
transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Length = 127
Score = 29.7 bits (67), Expect = 0.90
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 398 VSCGTGGASSASVKVSHSQKSKHSSCVG 425
+ G G A +++ + K G
Sbjct: 10 IHSGIGIRPHAQIELEYQGKIHKEISEG 37
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for
structura genomics, protein structure initiative,
unknown function; 2.80A {Listeria innocua}
Length = 185
Score = 29.6 bits (66), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 313 SFSVISLQELCCRAIVARTTVYA 335
+F IS+++LC +A V+R T Y
Sbjct: 37 TFESISIKDLCEQARVSRATFYR 59
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 33/80 (41%)
Query: 101 SGSGKYDDMLAYKTTTIL--------------------LDGKRVKLQLWDTSGQGRFCTI 140
SGK T++L D + L D G +
Sbjct: 57 QNSGK---------TSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK 107
Query: 141 IRSY----SRGAQGILLVYD 156
+ Y ++ +G++ + D
Sbjct: 108 LSDYLKTRAKFVKGLIFMVD 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 33/80 (41%)
Query: 101 SGSGKYDDMLAYKTTTIL--------------------LDGKRVKLQLWDTSGQGRFCTI 140
SGK T++L D + L D G +
Sbjct: 21 QNSGK---------TSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK 71
Query: 141 IRSY----SRGAQGILLVYD 156
+ Y ++ +G++ + D
Sbjct: 72 LSDYLKTRAKFVKGLIFMVD 91
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 1.8
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 39/138 (28%)
Query: 64 LLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKR 123
L VG++ +GK S L + + + L T + R
Sbjct: 46 LCVGETGLGK----------STLMDT-LFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94
Query: 124 VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI--------DRWLKEVEE 175
+KL + T G G I + S+ I + +L+E E
Sbjct: 95 LKLTIVSTVGFGD-------------------QINKEDSYKPIVEFIDAQFEAYLQE-EL 134
Query: 176 HAPGVPKVLVGNRLHLAF 193
V +R+H+
Sbjct: 135 KIRRVLHTYHDSRIHVCL 152
>3kkc_A TETR family transcriptional regulator; APC20805, structural
genomics, PSI-2, protein structure initiative; 2.50A
{Streptococcus agalactiae 2603V}
Length = 177
Score = 28.2 bits (63), Expect = 3.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 313 SFSVISLQELCCRAIVARTTVYA 335
+S I++Q++ A V R+T Y+
Sbjct: 29 DYSKITVQDVIGLANVGRSTFYS 51
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-biology, protei structure initiative; HET: PLP;
3.00A {Campylobacter jejuni subsp}
Length = 619
Score = 28.3 bits (63), Expect = 6.3
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 33/120 (27%)
Query: 187 NRLHLAFNRTVTTREAEM-----YAIK-NQMAFFEVSPLCDFNIRESF-------TELSR 233
++ FN+ + Y +K NQ F V L ++ EL
Sbjct: 60 ENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGF-VKNLVKLGKDYNYGLEAGSKAEL-L 117
Query: 234 RALQR---------NG------MERLWRSNKVGRKPLINFESFTEL---SRRALQRNGME 275
A+ NG + + + ++G + E EL A +R +
Sbjct: 118 LAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPK 177
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 27.4 bits (60), Expect = 8.9
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 262 TELSRRALQRNGMERLWRSNKGKHLLTYFQYCFAGLVRPSVDVNKNKYNLLSFSVISLQE 321
++ +R + +NG + N G Y F LV K ++ +S +V+ L
Sbjct: 2 SKKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVD-----LKWRWFFVSLAVLFLL- 55
Query: 322 LCCRAIVARTTVYAINQLPLPNLIKSHLKSYAMTSYTTMT 361
A T+Y + P+ N + S T+
Sbjct: 56 ----LNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLA 91
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator;
synthase, TETR family; 1.6A {Lactococcus lactis subsp}
SCOP: a.4.1.9 a.121.1.1
Length = 195
Score = 27.2 bits (60), Expect = 9.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 313 SFSVISLQELCCRAIVARTTVY 334
++ IS+ ++ A + R T Y
Sbjct: 30 AYHQISVSDIMQTAKIRRQTFY 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,307,759
Number of extensions: 367637
Number of successful extensions: 1127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 185
Length of query: 432
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 336
Effective length of database: 4,021,377
Effective search space: 1351182672
Effective search space used: 1351182672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)