RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3450
(432 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 134 bits (339), Expect = 2e-38
Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 18/190 (9%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
K YDYL K LL+GDS VGK +L + E F ++ +K
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLF-RFSEDAFNSTFISTIGID--------------FKI 45
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
TI LDGKR+KLQ+WDT+GQ RF TI +Y RGA GI+LVYDITN+ SFD I W++ +E
Sbjct: 46 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 105
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
EHA V K+++GN+ + R V+ E A+ + F E S + N+ +F L+R
Sbjct: 106 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165
Query: 234 RALQRNGMER 243
+ M++
Sbjct: 166 DIKAK--MDK 173
Score = 41.7 bits (97), Expect = 4e-05
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYK 37
K YDYL K LL+GDS VGK +L +
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLFRFS 27
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 121 bits (304), Expect = 2e-33
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 16/182 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD+L K +L+G++ VGK ++ + + FP + T
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVR-RFTQGLFPPGQGATIGVD--------------FMIKT 46
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ ++G++VKLQ+WDT+GQ RF +I +SY R A ++L YDIT + SF + WL+E+E++
Sbjct: 47 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 106
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
A V VLVGN++ LA R V+ + AE ++ M + E S N+ + F +L+ R
Sbjct: 107 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
Query: 236 LQ 237
+
Sbjct: 167 IS 168
Score = 39.8 bits (92), Expect = 2e-04
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGY 36
YD+L K +L+G++ VGK ++ +
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRF 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 119 bits (298), Expect = 2e-32
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 15/179 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD K +LVGDS VGK +L RF + F +G+ + ++
Sbjct: 3 YDVAFKVMLVGDSGVGKTCLLV---------RF-----KDGAFLAGTFISTVGIDFRNKV 48
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+ +DG +VKLQ+WDT+GQ RF ++ +Y R A +LL+YD+TNK SFD I WL E+ E+
Sbjct: 49 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY 108
Query: 177 APGVPKV-LVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
A + L+GN++ A R V + E A + + F E S N+ +FT +++
Sbjct: 109 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 167
Score = 38.3 bits (88), Expect = 6e-04
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYK 37
YD K +LVGDS VGK +L +K
Sbjct: 3 YDVAFKVMLVGDSGVGKTCLLVRFK 27
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 113 bits (284), Expect = 2e-30
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL+K L +GDS VGK L Y +++F + K A
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLY-RYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNG 56
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
+V LQLWDT+GQ RF ++ ++ R A G LL++D+T++ SF + W+ +++ +
Sbjct: 57 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 116
Query: 177 --APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
VL+GN+ L R V R+A A K + +FE S N+ ++ L
Sbjct: 117 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176
Query: 235 ALQR 238
++R
Sbjct: 177 IMKR 180
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 111 bits (279), Expect = 6e-30
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
Y Y+ K++++GD VGK +L + E +F + + + T
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLH-QFTEKKFMADC--------------PHTIGVEFGTRI 45
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + G+++KLQ+WDT+GQ RF + RSY RGA G L+VYDIT + +++ + WL +
Sbjct: 46 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL 105
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P +L+GN+ L R VT EA+ +A +N + F E S N+ ++F E +++
Sbjct: 106 TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164
Score = 39.1 bits (90), Expect = 3e-04
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGY 36
Y Y+ K++++GD VGK +L +
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQF 24
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 111 bits (279), Expect = 8e-30
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YDYL K +L+GDS VGK +LS + + F ES G +
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLS-RFTRNEFN-------LESKSTIGVEFATR-------S 45
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I +DGK +K Q+WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RWLKE+ +H
Sbjct: 46 IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 105
Query: 177 A-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
A + +LVGN+ L R V T EA +A KN ++F E S L N+ E+F +
Sbjct: 106 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
Query: 236 LQ 237
+
Sbjct: 166 YR 167
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 111 bits (278), Expect = 2e-29
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 20/196 (10%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLA--YKT 114
YDYL K LL+G+S VGK +L + + + Y + +K
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLL-RFSDDTYT----------------NDYISTIGVDFKI 45
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T+ LDGK VKLQ+WDT+GQ RF TI SY RG+ GI++VYD+T++ SF+G+ WL+E++
Sbjct: 46 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 105
Query: 175 EHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+A V K+LVGN+ L R V A+ +A N+M F E S L N+ ++F ++R
Sbjct: 106 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
Query: 234 RALQRNGMERLWRSNK 249
+ + + L + +
Sbjct: 166 QIKESMSQQNLNETTQ 181
Score = 39.5 bits (91), Expect = 3e-04
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYKL-ELTAWLMETKPVVATQKQYDYLLKFLLVGDSDV 71
YDYL K LL+G+S VGK +L + T + T V K + K + + D
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 72 GKQEILSGL 80
QE +
Sbjct: 63 AGQERFRTI 71
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 110 bits (275), Expect = 2e-29
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
YD+L KFL++G++ GK +L ++E +F + + + +
Sbjct: 2 YDFLFKFLVIGNAGTGKSCLLH-QFIEKKFK--------------DDSNHTIGVEFGSKI 46
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGI-DRWLKEVEE 175
I + GK VKLQ+WDT+GQ RF ++ RSY RGA G LLVYDIT++ +++ + +
Sbjct: 47 INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 106
Query: 176 HAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
+ + +L GN+ L +R VT EA +A +N++ F E S L N+ E+F + +R+
Sbjct: 107 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166
Query: 236 LQR 238
L +
Sbjct: 167 LNK 169
Score = 39.1 bits (90), Expect = 3e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGY 36
YD+L KFL++G++ GK +L +
Sbjct: 2 YDFLFKFLVIGNAGTGKSCLLHQF 25
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 108 bits (271), Expect = 8e-29
Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
++K LL+GDS VGK +L ++E +F S + +K T+ +
Sbjct: 2 IMKILLIGDSGVGKSCLLV-RFVEDKFN--------------PSFITTIGIDFKIKTVDI 46
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPG 179
+GK+VKLQ+WDT+GQ RF TI +Y RGA GI+LVYDIT++ +F I +W K V EHA
Sbjct: 47 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 106
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238
++L+ R VT + E A + + F E S D N+ E F L++ ++
Sbjct: 107 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
Score = 31.3 bits (70), Expect = 0.11
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 16 LLKFLLVGDSDVGKQEILSGYKL-ELTAWLMETKPVVATQKQYDYLLKFLLVGDSDVGKQ 74
++K LL+GDS VGK +L + + + T + K D K + + D Q
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 75 EILSGL 80
E +
Sbjct: 62 ERFRTI 67
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 105 bits (262), Expect = 2e-27
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
+DY+ K L++G+S VGK L Y + F G T
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLF-RYADDSFT-------PAFVSTVGIDFK-------VKT 46
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
I + KR+KLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+ + W +++ +
Sbjct: 47 IYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 106
Query: 177 APGVPKV-LVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
+ +V LVGN+ + R V++ A FFE S + N++++F L
Sbjct: 107 SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
Query: 236 LQR 238
++
Sbjct: 167 CEK 169
Score = 39.1 bits (90), Expect = 3e-04
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYK 37
+DY+ K L++G+S VGK L Y
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYA 26
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 104 bits (259), Expect = 5e-27
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 16/181 (8%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL 118
YL K++++GD+ VGK +L + + RF + + +
Sbjct: 2 YLFKYIIIGDTGVGKSCLLL-QFTDKRFQ--------------PVHDLTIGVEFGARMVN 46
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA- 177
+DGK++KLQ+WDT+GQ F +I RSY RGA G LLVYDIT + +F+ + WL++ +H+
Sbjct: 47 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 106
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
+ +L+GN+ L R V E E +A ++ + F E S N+ E+F ++ +
Sbjct: 107 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166
Query: 238 R 238
+
Sbjct: 167 K 167
Score = 33.3 bits (75), Expect = 0.027
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 15 YLLKFLLVGDSDVGKQEILSGY 36
YL K++++GD+ VGK +L +
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQF 23
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 102 bits (254), Expect = 2e-26
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 57 YDYL--LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
D L LK L++G+S VGK +L + + F E G
Sbjct: 2 EDVLTTLKILIIGESGVGKSSLLL-RFTDDTFD-------PELAATIGVDFKVKT----- 48
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
I +DG + KL +WDT+GQ RF T+ SY RGAQG++LVYD+T + +F +D WL E+E
Sbjct: 49 --ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 106
Query: 175 EHAP-GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+ ++ NR V E +A K+ M F E S ++ +F EL
Sbjct: 107 TYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166
Query: 234 RALQRNGMERLWRS 247
+ +Q G LW S
Sbjct: 167 KIIQTPG---LWES 177
Score = 29.8 bits (66), Expect = 0.36
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 13 YDYL--LKFLLVGDSDVGKQEILSGY 36
D L LK L++G+S VGK +L +
Sbjct: 2 EDVLTTLKILIIGESGVGKSSLLLRF 27
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 92.7 bits (229), Expect = 6e-23
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)
Query: 59 YLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTIL 118
Y K +L+G+ VGK ++ Y E++F ++ T +
Sbjct: 2 YSFKVVLLGEGCVGKTSLVL-RYCENKFN--------------DKHITTLGASFLTKKLN 46
Query: 119 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA- 177
+ GKRV L +WDT+GQ RF + Y R + G +LVYDIT++ SF + W+KE+ +
Sbjct: 47 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 106
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
+ +VGN++ L R V+ +EAE YA + S + I E F +L +R ++
Sbjct: 107 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
Score = 33.0 bits (74), Expect = 0.037
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 15 YLLKFLLVGDSDVGKQEILSGYK 37
Y K +L+G+ VGK ++ Y
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYC 24
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 89.6 bits (221), Expect = 9e-22
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 18/181 (9%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
L K ++VG VGK + ++ F + ++
Sbjct: 4 LHKVIMVGSGGVGKSALTL-QFMYDEFV-------EDYEPTKADSYRKKVVL-------- 47
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
DG+ V++ + DT+GQ + I +Y R +G L V+ IT SF + +++
Sbjct: 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP +LVGN+ L R V+ EA+ A + + + E S N+ + F +L R
Sbjct: 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
Query: 238 R 238
R
Sbjct: 168 R 168
Score = 29.9 bits (66), Expect = 0.41
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 16 LLKFLLVGDSDVGKQEILSGY 36
L K ++VG VGK + +
Sbjct: 4 LHKVIMVGSGGVGKSALTLQF 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 87.7 bits (216), Expect = 4e-21
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
L K +L+GD VGK +++ Y+ ++F + + + +
Sbjct: 4 SSLFKVILLGDGGVGKSSLMN-RYVTNKFDTQL--------------FHTIGVEFLNKDL 48
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
+DG V +Q+WDT+GQ RF ++ + RG+ LL + + + SF + W KE +A
Sbjct: 49 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 108
Query: 178 -----PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKN-QMAFFEVSPLCDFNIRESFTEL 231
P V++GN++ + R V+T EA+ + N +FE S N+ +F E
Sbjct: 109 DVKEPESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167
Query: 232 SRRALQ 237
RR L
Sbjct: 168 VRRVLA 173
Score = 31.1 bits (69), Expect = 0.15
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 14 DYLLKFLLVGDSDVGKQEILSGY 36
L K +L+GD VGK +++ Y
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRY 26
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 84.4 bits (207), Expect = 8e-20
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
LLK +++GDS VGK +++ Y+ +F ++ G+ +
Sbjct: 2 LLKVIILGDSGVGKTSLMN-QYVNKKFS-------NQYKATIGADFLTKEVMV------- 46
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
D + V +Q+WDT+GQ RF ++ ++ RGA +LV+D+T +F +D W E A
Sbjct: 47 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP 106
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
P V++GN++ L + T R KN + +FE S N+ ++F ++R
Sbjct: 107 RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 166
Query: 235 ALQRNGMERLWRSN 248
AL++ L+
Sbjct: 167 ALKQETEVELYNEF 180
Score = 31.6 bits (70), Expect = 0.098
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 16 LLKFLLVGDSDVGKQEILSGY 36
LLK +++GDS VGK +++ Y
Sbjct: 2 LLKVIILGDSGVGKTSLMNQY 22
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 83.9 bits (206), Expect = 8e-20
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K + +G+ VGK +++ ++ F + + + + + T+ L+
Sbjct: 2 KLVFLGEQSVGKTSLIT-RFMYDSFD--------------NTYQATIGIDFLSKTMYLED 46
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-PGV 180
+ ++LQLWDT+GQ RF ++I SY R + ++VYDITN SF +W+ +V V
Sbjct: 47 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 106
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+LVGN+ LA R V+ E E A + + F E S +N+++ F ++
Sbjct: 107 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160
Score = 28.0 bits (61), Expect = 1.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K + +G+ VGK +++ +
Sbjct: 2 KLVFLGEQSVGKTSLITRF 20
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 83.6 bits (205), Expect = 2e-19
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
K ++VG VGK + +++S F + +S
Sbjct: 4 SETHKLVVVGGGGVGKSALTI-QFIQSYFVSDYDPTIEDSYTK---------------IC 47
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA 177
+DG +L + DT+GQ F + Y R G LLV+ I ++ SF+ + + ++
Sbjct: 48 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 107
Query: 178 --PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
P VLVGN+ L R V EA + + +A+FE S N+ E+F +L R
Sbjct: 108 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
Query: 236 LQR 238
+
Sbjct: 168 RKY 170
Score = 31.6 bits (70), Expect = 0.11
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 14 DYLLKFLLVGDSDVGKQEILSGY 36
K ++VG VGK + +
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQF 26
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 83.6 bits (205), Expect = 2e-19
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+LK +++GDS VGK ++ Y+ ++ + G+ +
Sbjct: 2 ILKVIILGDSGVGKTSLMH-RYVNDKYS-------QQYKATIGADFLTKEVTVD------ 47
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA-- 177
K +Q+WDT+GQ RF ++ ++ RGA +LVYD+TN SF+ I W E HA
Sbjct: 48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANV 107
Query: 178 ---PGVPKVLVGNRLHLAFNRTVTTREAEMYAIK--NQMAFFEVSPLCDFNIRESFTELS 232
P V++GN++ ++ + + ++ K + F S N+ +F E++
Sbjct: 108 NSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 167
Query: 233 RRALQRN 239
R ALQ+N
Sbjct: 168 RSALQQN 174
Score = 30.8 bits (68), Expect = 0.18
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 16 LLKFLLVGDSDVGKQEILSGY 36
+LK +++GDS VGK ++ Y
Sbjct: 2 ILKVIILGDSGVGKTSLMHRY 22
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 82.7 bits (203), Expect = 3e-19
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 18/175 (10%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K +++G VGK + ++ F + + I +D
Sbjct: 5 KVVVLGSGGVGKSALTV-QFVTGTFI-------EKYDPTIE--------DFYRKEIEVDS 48
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PG 179
L++ DT+G +F ++ Y + QG +LVY + N+ SF I ++
Sbjct: 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
VP +LVGN++ L R V++ E A + F E S + E F E+ R+
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
Score = 28.0 bits (61), Expect = 1.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K +++G VGK + +
Sbjct: 5 KVVVLGSGGVGKSALTVQF 23
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 80.5 bits (197), Expect = 2e-18
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
Q++Y + ++VG VGK + +++S F ++ +
Sbjct: 3 QEKY----RLVVVGGGGVGKSALTI-QFIQSYFV-------TDYDPTIEDSYTKQCVIDD 50
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
+ +L + DT+GQ F + Y R +G LLV+ +T++ SF+ I ++ +++
Sbjct: 51 --------RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
Query: 174 EEHA--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTEL 231
P +L+GN+ L R VT E + A + ++ + E S N+ ++F EL
Sbjct: 103 LRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162
Query: 232 SRRALQR 238
R +
Sbjct: 163 VRVIRKF 169
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 79.7 bits (195), Expect = 3e-18
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K +L+G+S VGK ++ +++ +F F + T+ LD
Sbjct: 8 KLVLLGESAVGKSSLVL-RFVKGQFHEFQESTIGAAFLT--------------QTVCLDD 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDR-WLKEVEEHAPGV 180
VK ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF + + +P +
Sbjct: 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 112
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQRN 239
L GN+ LA R V +EA+ YA N + F E S N+ E F ++++ L +N
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKN 170
Score = 27.3 bits (59), Expect = 2.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K +L+G+S VGK ++ +
Sbjct: 8 KLVLLGESAVGKSSLVLRF 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 78.2 bits (191), Expect = 8e-18
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VG+ VGK ++ Y + F + + K + + I ++
Sbjct: 3 IKMVVVGNGAVGKSSMIQ-RYCKGIFTKDY--------------KKTIGVDFLERQIQVN 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+ V+L LWDT+GQ F I ++Y RGAQ +LV+ T++ SF+ I W ++V +
Sbjct: 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI 107
Query: 181 PKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
P LV N++ L + + EAE A + ++ F+ S D N+ E F L+ + LQ
Sbjct: 108 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164
Score = 29.3 bits (64), Expect = 0.53
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
+K ++VG+ VGK ++ Y
Sbjct: 3 IKMVVVGNGAVGKSSMIQRY 22
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 78.5 bits (192), Expect = 8e-18
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K ++VG VGK + +++ F E ++
Sbjct: 5 KLVVVGAGGVGKSALTI-QLIQNHFV-------DEYDPTIEDSYRKQVVIDG-------- 48
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PG 179
+ L + DT+GQ + + Y R +G L V+ I N SF+ I ++ ++++
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQ 237
VP VLVGN+ RTV +R+A+ A + + E S + ++F L R Q
Sbjct: 109 VPMVLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.0 bits (61), Expect = 1.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K ++VG VGK +
Sbjct: 5 KLVVVGAGGVGKSALTIQL 23
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 77.4 bits (189), Expect = 2e-17
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILL 119
+ K +++GDS+VGK + + RFP + G ++ + +
Sbjct: 2 IFKIIVIGDSNVGKTCLTY-RFCAGRFP-------DRTEATIGV-------DFRERAVDI 46
Query: 120 DGKRVKLQLWDTSGQGRFCTIIR-SYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA- 177
DG+R+K+QLWDT+GQ RF + Y R ++ VYD+TN SF + W++E ++H
Sbjct: 47 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 106
Query: 178 -PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVS---PLCDFNIRESFTEL 231
+P++LVGN+ L V T A+ +A + M FE S P + ++ F L
Sbjct: 107 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
Score = 30.8 bits (68), Expect = 0.17
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 16 LLKFLLVGDSDVGKQEILSGYK 37
+ K +++GDS+VGK + +
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFC 23
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 74.3 bits (181), Expect = 2e-16
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML-AYKTTTILLD 120
K ++VGD VGK + + + F YD + +D
Sbjct: 6 KLVVVGDGGVGKSALTI-QFFQKIFV----------------PDYDPTIEDSYLKHTEID 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--P 178
+ L + DT+GQ F + Y R G L+VY +T+K SF+ +DR+ + +
Sbjct: 49 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE 108
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC-DFNIRESFTELSRRALQ 237
P +LV N++ L R VT + + A K + + E S N+ ++F +L R Q
Sbjct: 109 SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
Query: 238 R 238
+
Sbjct: 169 Q 169
Score = 29.2 bits (64), Expect = 0.64
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K ++VGD VGK + +
Sbjct: 6 KLVVVGDGGVGKSALTIQF 24
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 74.3 bits (181), Expect = 3e-16
Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 37/206 (17%)
Query: 45 METKPVVATQKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSG 104
M P +LK ++VGD VGK +L Y FP ++
Sbjct: 1 MAHGP-------GALMLKCVVVGDGAVGKTCLLM-SYANDAFPEEYV------------- 39
Query: 105 KYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFD 164
+ + ++ + GK+ L L+DT+GQ + + L+ + + N SF
Sbjct: 40 --PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 97
Query: 165 GIDRW-LKEVEEHAPGVPKVLVGNRLHLAFNRT------------VTTREAEMYAIK-NQ 210
+ + E++E+AP VP +L+G ++ L + + + + A +
Sbjct: 98 NVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 157
Query: 211 MAFFEVSPLCDFNIRESFTELSRRAL 236
+ E S L ++ F E L
Sbjct: 158 CCYVECSALTQKGLKTVFDEAIIAIL 183
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 73.1 bits (178), Expect = 7e-16
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML-AYKTTTILLD 120
K +++G VGK + +++ F KYD + + +D
Sbjct: 5 KLVVLGSGGVGKSALTV-QFVQGIFV----------------EKYDPTIEDSYRKQVEVD 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--AP 178
++ L++ DT+G +F + Y + QG LVY IT + +F+ + +++
Sbjct: 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE 107
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIK-NQMAFFEVSPLCDFNIRESFTELSRR 234
VP +LVGN+ L R V + + A + AF E S N+ E F +L R+
Sbjct: 108 DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Score = 28.0 bits (61), Expect = 1.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
K +++G VGK + +
Sbjct: 5 KLVVLGSGGVGKSALTVQF 23
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 72.7 bits (177), Expect = 1e-15
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 32/192 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML-AYKTTTILL 119
+K ++VGD VGK +L Y + FP G+Y + + +++
Sbjct: 6 IKCVVVGDGAVGKTCLLI-SYTTNAFP----------------GEYIPTVFDNYSANVMV 48
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW-LKEVEEHAP 178
DGK V L LWDT+GQ + + L+ + + + SF+ + EV H P
Sbjct: 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 108
Query: 179 GVPKVLVGNRLHLAFNRTVTTRE------------AEMYAIK-NQMAFFEVSPLCDFNIR 225
P +LVG +L L ++ + A + + + E S L ++
Sbjct: 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168
Query: 226 ESFTELSRRALQ 237
F E R L
Sbjct: 169 TVFDEAIRAVLC 180
Score = 29.2 bits (64), Expect = 0.70
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
+K ++VGD VGK +L Y
Sbjct: 6 IKCVVVGDGAVGKTCLLISY 25
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 71.9 bits (175), Expect = 2e-15
Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 25/179 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
++ L++G GK IL + L S + G
Sbjct: 13 MRILMLGLDAAGKTTILY---------KLKLGQSVTTIPTVGFNVETVT----------- 52
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--P 178
K VK +WD GQ + + R Y G QG++ V D ++ D + L +
Sbjct: 53 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR 112
Query: 179 GVPKVLVGNRLHLAFNRT---VTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
++ N+ L + + + E T L+
Sbjct: 113 DAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171
Score = 28.8 bits (63), Expect = 0.89
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
++ L++G GK IL K
Sbjct: 13 MRILMLGLDAAGKTTILYKLK 33
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 71.2 bits (173), Expect = 3e-15
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK L+GD+ VGK I+ ++E F S +++ +
Sbjct: 5 LKVCLLGDTGVGKSSIMW-RFVEDSFDPNINPTIGASFMTKTVQYQNELHKF-------- 55
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
+WDT+G RF + Y RG+ ++VYDIT + +F + W++E+ +H P
Sbjct: 56 ------LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS 109
Query: 181 PKV-LVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
V + GN+ L R V R+A+ YA F E S NI E F E+SRR
Sbjct: 110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 164
Score = 28.8 bits (63), Expect = 0.79
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
LK L+GD+ VGK I+ +
Sbjct: 5 LKVCLLGDTGVGKSSIMWRF 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 70.8 bits (172), Expect = 4e-15
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
+ + G VGK ++ +++ F S P + +
Sbjct: 4 RVAVFGAGGVGKSSLVL-RFVKGTFR------ESYIPTVEDTYRQVISCDKSIC------ 50
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA---P 178
LQ+ DT+G +F + R +LVY IT++ S + + +++ E
Sbjct: 51 ---TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 107
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238
+P +LVGN+ + +R V + EAE A + AF E S + N++E F EL +R
Sbjct: 108 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167
Query: 239 N 239
Sbjct: 168 T 168
Score = 27.6 bits (60), Expect = 2.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 18 KFLLVGDSDVGKQEILSGY 36
+ + G VGK ++ +
Sbjct: 4 RVAVFGAGGVGKSSLVLRF 22
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 69.3 bits (168), Expect = 1e-14
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K +L+G++ VGK I+ ++ + F G+ + T+
Sbjct: 4 IKLVLLGEAAVGKSSIVL-RFVSNDFA-------ENKEPTIGAAFLTQRVTINEHTV--- 52
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH---- 176
K ++WDT+GQ RF ++ Y R AQ L+VYD+T SF W+KE+ E
Sbjct: 53 ----KFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+ L R V E E A + + FFE S N+ + F + +
Sbjct: 109 IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166
Score = 29.2 bits (64), Expect = 0.68
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
+K +L+G++ VGK I+ +
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFV 24
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 69.2 bits (168), Expect = 2e-14
Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 25/183 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
L+ L++G GK IL L + G L
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--------------------FNVETLS 57
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--P 178
K +KL +WD GQ R Y ++ V D T+K + L + +
Sbjct: 58 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ 117
Query: 179 GVPKVLVGNRLHLAFNRTV---TTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
++ N+ + + + + S + I E L
Sbjct: 118 DAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
Query: 236 LQR 238
+
Sbjct: 178 KEE 180
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYKLE 39
L+ L++G GK IL ++
Sbjct: 18 LRILILGLDGAGKTTILYRLQIG 40
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 68.9 bits (167), Expect = 3e-14
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K ++VGD VGK +L Y ++FP S P + T+++
Sbjct: 4 IKCVVVGDGAVGKTCLLI-SYTTNKFP------SEYVP---------TVFDNYAVTVMIG 47
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW-LKEVEEHAPG 179
G+ L L+DT+GQ + + L+ + + + SF+ + + E+ H P
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 180 VPKVLVGNRLHLAFNRTV------------TTREAEMYA-IKNQMAFFEVSPLCDFNIRE 226
P +LVG ++ L + + T AE A + + E S L ++
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKN 167
Query: 227 SFTELSRRALQRNGMER 243
F E AL+ ++
Sbjct: 168 VFDEAILAALEPPEPKK 184
Score = 28.4 bits (62), Expect = 1.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
+K ++VGD VGK +L Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISY 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 67.3 bits (163), Expect = 6e-14
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K + G + VGK ++ +L RF +YD L
Sbjct: 3 VKLAIFGRAGVGKSALVV-RFLTKRFI----------------WEYDPTLESTYRHQATI 45
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--P 178
V + + R +G +LVYDIT++ SF+ + ++E
Sbjct: 46 DDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK 105
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLC-DFNIRESFTELSRRALQ 237
V +LVGN+ L +R V+T E E A + AF+E S + NI E F EL R +
Sbjct: 106 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165
Query: 238 R 238
R
Sbjct: 166 R 166
Score = 28.8 bits (63), Expect = 0.90
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
+K + G + VGK ++ +
Sbjct: 3 VKLAIFGRAGVGKSALVVRF 22
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 65.8 bits (159), Expect = 2e-13
Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
Q Q+ K +LVGD GK + +L F + + +
Sbjct: 1 QVQF----KLVLVGDGGTGKTTFVK-RHLTGEFEKKY--------------VATLGVEVH 41
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
+ +K +WDT+GQ +F + Y AQ ++++D+T++ ++ + W +++
Sbjct: 42 PLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101
Query: 174 EEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
+P VL GN++ + + + K + ++++S ++N + F L+R
Sbjct: 102 VRVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
Query: 234 RALQRNGME 242
+ + +E
Sbjct: 160 KLIGDPNLE 168
Score = 29.6 bits (65), Expect = 0.49
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 10 QKQYDYLLKFLLVGDSDVGKQEILSGY 36
Q Q+ K +LVGD GK + +
Sbjct: 1 QVQF----KLVLVGDGGTGKTTFVKRH 23
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 65.4 bits (158), Expect = 3e-13
Identities = 25/179 (13%), Positives = 49/179 (27%), Gaps = 25/179 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
++ L+VG GK IL + ++
Sbjct: 1 MRILMVGLDAAGKTTILY-KLKLGEIV-------------------TTIPTIGFNVETVE 40
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--AP 178
K + +WD GQ + + R Y + QG++ V D ++ + L +
Sbjct: 41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR 100
Query: 179 GVPKVLVGNRLHL---AFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
++ N+ L +T + + E LS +
Sbjct: 101 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
Score = 29.6 bits (65), Expect = 0.42
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
++ L+VG GK IL K
Sbjct: 1 MRILMVGLDAAGKTTILYKLK 21
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 62.1 bits (149), Expect = 5e-12
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query: 58 DYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
+ + +L+G+ VGK + + F S C G+
Sbjct: 1 NTYYRVVLIGEQGVGKSTLAN---------IFAGVHDSMDSDCEVLGEDTYERTLMV--- 48
Query: 118 LLDGKRVKLQLWDTS-GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH 176
DG+ + L D +G + + L+VY IT++ SF+ ++
Sbjct: 49 --DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 106
Query: 177 A--PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
+P +LVGN+ L R V+ E A+ F E S N++E F + R+
Sbjct: 107 RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 166
Query: 235 ALQR 238
R
Sbjct: 167 VRLR 170
Score = 29.0 bits (63), Expect = 0.77
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 14 DYLLKFLLVGDSDVGKQEILSGY 36
+ + +L+G+ VGK + + +
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIF 23
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4,
SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 56.2 bits (136), Expect = 2e-11
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 318 SLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352
SLQ +C I TT I+ LP+P+ +K +LK Y
Sbjct: 3 SLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEY 37
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 59.7 bits (143), Expect = 3e-11
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 31/193 (16%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K ++VGDS GK +L ++ + FP + P + +D
Sbjct: 3 CKIVVVGDSQCGKTALLH-VFAKDCFP------ENYVPTVFENYTASFE---------ID 46
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV-EEHAPG 179
+R++L LWDTSG + + + +L+ +DI+ + D + + K +E P
Sbjct: 47 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN 106
Query: 180 VPKVLVGNRLHLAFN------------RTVTTREAEMYAIK-NQMAFFEVSPLCDFN-IR 225
+LVG + L + V+ + A + + E S L N +R
Sbjct: 107 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 166
Query: 226 ESFTELSRRALQR 238
+ F + + +
Sbjct: 167 DIFHVATLACVNK 179
Score = 28.9 bits (63), Expect = 0.97
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
K ++VGDS GK +L +
Sbjct: 3 CKIVVVGDSQCGKTALLHVF 22
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 59.6 bits (143), Expect = 3e-11
Identities = 47/191 (24%), Positives = 72/191 (37%), Gaps = 30/191 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K ++VGD GK +L + + +FP P + I +D
Sbjct: 3 KKLVIVGDGACGKTCLLI-VNSKDQFP------EVYVP---------TVFENYVADIEVD 46
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRW-LKEVEEHAPG 179
GK+V+L LWDT+G + + IL+ + I + S + I EV+ P
Sbjct: 47 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN 106
Query: 180 VPKVLVGNRLHLAFNRTV------------TTREAEMYAIK-NQMAFFEVSPLCDFNIRE 226
VP +LVGN+ L + E A + + E S +RE
Sbjct: 107 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 166
Query: 227 SFTELSRRALQ 237
F +R ALQ
Sbjct: 167 VFEMATRAALQ 177
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 58.2 bits (139), Expect = 9e-11
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDML-AYKTTTILL 119
K ++G VGK + ++E +F YD + T I +
Sbjct: 5 RKIAILGYRSVGKSSLTI-QFVEGQFV----------------DSYDPTIENTFTKLITV 47
Query: 120 DGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EEHA 177
+G+ LQL DT+GQ + ++YS G +LVY +T+ SF+ I ++
Sbjct: 48 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 107
Query: 178 PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
+P +LVGN+ L R ++ E + A AF E S + + F + A
Sbjct: 108 VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165
Score = 27.8 bits (60), Expect = 1.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
K ++G VGK + +
Sbjct: 5 RKIAILGYRSVGKSSLTIQF 24
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 58.4 bits (140), Expect = 9e-11
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 25/186 (13%)
Query: 54 QKQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYK 113
+ D ++ LL+G + GK +L + + S G
Sbjct: 10 KSAPDQEVRILLLGLDNAGKTTLLK---------QLASEDISHITPTQGFNIKSVQ---- 56
Query: 114 TTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV 173
+ KL +WD GQ + RSY ++ V D ++ F+ + L E+
Sbjct: 57 -------SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL 109
Query: 174 EEHA--PGVPKVLVGNRLHLAFNRT---VTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
E VP ++ N+ L + S L +++
Sbjct: 110 LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169
Query: 229 TELSRR 234
+ +
Sbjct: 170 NWVCKN 175
Score = 29.9 bits (66), Expect = 0.40
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 10 QKQYDYLLKFLLVGDSDVGKQEILSGYKLELTAWLMET 47
+ D ++ LL+G + GK +L E + + T
Sbjct: 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPT 47
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 57.7 bits (138), Expect = 1e-10
Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 25/179 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
K ++VG + GK IL +F ++ + GS + +
Sbjct: 16 HKVIIVGLDNAGKTTILY---------QFSMNEVVHTSPTIGSNVEEIV----------- 55
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--AP 178
+ +WD GQ + +Y + +++V D T++ L ++ H
Sbjct: 56 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 115
Query: 179 GVPKVLVGNRLHLAFNRT---VTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRR 234
++ N+ + T ++ +Q L + + + R
Sbjct: 116 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174
Score = 27.7 bits (60), Expect = 2.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
K ++VG + GK IL +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFS 36
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 55.9 bits (133), Expect = 5e-10
Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 19/179 (10%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K LL+G VGK + F +E+ + + +
Sbjct: 3 KVLLLGAPGVGKSALAR------IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV---- 52
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--APG 179
+D Q + ++VY +T+K SF+ ++
Sbjct: 53 -------YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 105
Query: 180 VPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRALQR 238
VP +LVGN+ L +R V+ E A+ F E S N++ F + R+ R
Sbjct: 106 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
Score = 27.0 bits (58), Expect = 3.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 18 KFLLVGDSDVGKQEILSGYK 37
K LL+G VGK + +
Sbjct: 3 KVLLLGAPGVGKSALARIFG 22
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 55.1 bits (132), Expect = 2e-09
Identities = 26/214 (12%), Positives = 54/214 (25%), Gaps = 38/214 (17%)
Query: 55 KQYDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKT 114
+ Y + LL+G + GK I+ + +
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRI---------------------LHVVLTSGIFE 39
Query: 115 TTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVE 174
T +V ++D GQ I+ V ++ D ++
Sbjct: 40 TKF--QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQ 97
Query: 175 EHA------------PGVPKVLVGNRLHLAFNRTVTTREA-EMYAIKNQMAFFEVSPLCD 221
E + +L N+ L + + + E Y + +
Sbjct: 98 EALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE 157
Query: 222 FNIRESFTELSRRALQRNGMERLWRSNKVGRKPL 255
T + R+ R+ ++ GR
Sbjct: 158 PGEDPRVTRA--KYFIRDEFLRISTASGDGRHYC 189
Score = 33.6 bits (76), Expect = 0.029
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 11 KQYDYLLKFLLVGDSDVGKQEILSGYKLE 39
+ Y + LL+G + GK I+ ++
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRIL 29
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 54.2 bits (129), Expect = 3e-09
Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
L+ ++GD+ GK ++ +L + +L+D
Sbjct: 6 LRLGVLGDARSGKSSLIH-RFLTGSY----------------QVLEKTESEQYKKEMLVD 48
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGV 180
G+ + + + +G +S A ++ V+ + ++ SF + R ++
Sbjct: 49 GQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG 103
Query: 181 PK------VLVGNRLHLAFNRTVTTREAEMYAI-KNQMAFFEVSPLCDFNIRESFTELSR 233
V +R+ + R V A + +++E N+ F E+++
Sbjct: 104 RGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 163
Query: 234 RALQRNGMERL 244
+ + ++L
Sbjct: 164 KVVTLRKQQQL 174
Score = 28.0 bits (61), Expect = 1.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 17 LKFLLVGDSDVGKQEILSGY 36
L+ ++GD+ GK ++ +
Sbjct: 6 LRLGVLGDARSGKSSLIHRF 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 51.6 bits (122), Expect = 1e-08
Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 31/186 (16%)
Query: 61 LKFLLVGDSDVGKQEIL---SGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTI 117
L+ L++G + GK IL +G +++ P
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG-----------------------FNIK 39
Query: 118 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEV--EE 175
L+ + KL +WD GQ + R+Y G++ V D ++ R L+ + EE
Sbjct: 40 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 99
Query: 176 HAPGVPKVLVGNRLHLAFNRTVTTREAE---MYAIKNQMAFFEVSPLCDFNIRESFTELS 232
G ++ N+ L + + + S + ++ L
Sbjct: 100 RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159
Query: 233 RRALQR 238
R
Sbjct: 160 DDISSR 165
Score = 27.7 bits (60), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 17 LKFLLVGDSDVGKQEILSGYKLE 39
L+ L++G + GK IL + E
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGE 25
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 51.6 bits (122), Expect = 1e-08
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 32/184 (17%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
K L +G + GK +L + R + T+ L
Sbjct: 2 KLLFLGLDNAGKTTLLH-MLKNDRLATLQPT-------------------WHPTSEELAI 41
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--PG 179
+K +D G + + + Y GI+ + D + FD L + A
Sbjct: 42 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD 101
Query: 180 VPKVLVGNRLHLAFNRTVT----------TREAEMYAIKNQMAFFEVSPLCDFNIRESFT 229
VP V++GN++ + T ++ + + F S + E+F
Sbjct: 102 VPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161
Query: 230 ELSR 233
LS+
Sbjct: 162 WLSQ 165
Score = 26.6 bits (57), Expect = 4.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 18 KFLLVGDSDVGKQEILSGYK 37
K L +G + GK +L K
Sbjct: 2 KLLFLGLDNAGKTTLLHMLK 21
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 51.6 bits (122), Expect = 2e-08
Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 24/180 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
++ LVG GK ++ + +F + + + I
Sbjct: 3 MELTLVGLQYSGKTTFVN-VIASGQF----------------NEDMIPTVGFNMRKI--T 43
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP-- 178
V ++LWD GQ RF ++ Y RG I+ + D ++ + L + +
Sbjct: 44 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 103
Query: 179 GVPKVLVGNRLHLA---FNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
G+P +++GN+ L + + + ++ + +S NI + L + +
Sbjct: 104 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
Score = 28.1 bits (61), Expect = 1.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
++ LVG GK ++
Sbjct: 3 MELTLVGLQYSGKTTFVNVIA 23
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 47.8 bits (112), Expect = 3e-07
Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 25/183 (13%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
++ L++G GK IL R + + G
Sbjct: 6 MRILILGLDGAGKTTILY---------RLQVGEVVTTIPTIGFNVETVT----------- 45
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEH--AP 178
K +K Q+WD G R Y ++ V D ++ L + E
Sbjct: 46 YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR 105
Query: 179 GVPKVLVGNRLHLAFNRTV---TTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSRRA 235
V+ N+ + T + F+ S + E+ L
Sbjct: 106 KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
Query: 236 LQR 238
R
Sbjct: 166 KSR 168
Score = 27.4 bits (59), Expect = 2.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYK 37
++ L++G GK IL +
Sbjct: 6 MRILILGLDGAGKTTILYRLQ 26
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 40.8 bits (96), Expect = 7e-06
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 312 LSFSVISLQELCCRAIVARTTVYAINQLPLPNLIKSHLKSY 352
L S SLQ LC R + + T AI LPLP +K +L+ Y
Sbjct: 8 LYTSAPSLQHLC-RLTINKCTG-AIWGLPLPTRLKDYLEEY 46
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 43.9 bits (102), Expect = 9e-06
Identities = 24/195 (12%), Positives = 50/195 (25%), Gaps = 37/195 (18%)
Query: 57 YDYLLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTT 116
Y K + +G + GK +L D + +
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLH---------MLKDDRLGQHVPTLHPTSEELT------- 53
Query: 117 ILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKE--VE 174
+ +D G + + ++Y GI+ + D + L +
Sbjct: 54 ----IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 109
Query: 175 EHAPGVPKVLVGNRLHLAFNRTVTTREAEM---------------YAIKNQMAFFEVSPL 219
E VP +++GN++ + + F S L
Sbjct: 110 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169
Query: 220 CDFNIRESFTELSRR 234
E F +++
Sbjct: 170 KRQGYGEGFRWMAQY 184
Score = 27.0 bits (58), Expect = 4.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 13 YDYLLKFLLVGDSDVGKQEILSGYK 37
Y K + +G + GK +L K
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLHMLK 34
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 43.7 bits (102), Expect = 1e-05
Identities = 28/196 (14%), Positives = 45/196 (22%), Gaps = 44/196 (22%)
Query: 60 LLKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTT---- 115
L+K LL+G + GK L + + T
Sbjct: 2 LVKILLLGAGESGKSTFLK--------------------------QMRIIHGQDPTKGIH 35
Query: 116 TILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEE 175
+ K V ++ D GQ IL + + DR + E
Sbjct: 36 EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE 95
Query: 176 HA------------PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFN 223
V +L N+ L + + +
Sbjct: 96 SLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRD--VQKF 153
Query: 224 IRESFTELSRRALQRN 239
+ E F R QR
Sbjct: 154 LVECFRGKRRDQQQRP 169
Score = 29.1 bits (64), Expect = 0.84
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 16 LLKFLLVGDSDVGKQEILSGYK 37
L+K LL+G + GK L +
Sbjct: 2 LVKILLLGAGESGKSTFLKQMR 23
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 43.8 bits (102), Expect = 1e-05
Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 39/191 (20%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
+K LL+G + GK I+ + + + +
Sbjct: 3 VKLLLLGAGESGKSTIVK---------QMKIIHEAGTGI---------------VETHFT 38
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDGIDRWLKEVEEHA--- 177
K + +++D GQ G I+ +++ D + + E
Sbjct: 39 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 98
Query: 178 ---------PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
+L N+ L + + Y +E I+ F
Sbjct: 99 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEE---AAAYIQCQF 155
Query: 229 TELSRRALQRN 239
+L++R +
Sbjct: 156 EDLNKRKDTKE 166
Score = 27.2 bits (59), Expect = 3.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 17 LKFLLVGDSDVGKQEILSGYKLE 39
+K LL+G + GK I+ K+
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKII 25
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 40.3 bits (93), Expect = 2e-04
Identities = 20/187 (10%), Positives = 46/187 (24%), Gaps = 35/187 (18%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
LK LL+G + GK + G D
Sbjct: 3 LKLLLLGTGESGKSTFIKQ-------------------MRIIHGSGVPTTGIIEYPF--D 41
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITN-----------KWSFDGIDRW 169
+ V ++ D GQ I+ + ++ + +
Sbjct: 42 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 101
Query: 170 LKEVEEHA-PGVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESF 228
+ +L N+ L + + + + + + + I + F
Sbjct: 102 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA--AREFILKMF 159
Query: 229 TELSRRA 235
+L+ +
Sbjct: 160 VDLNPDS 166
Score = 27.6 bits (60), Expect = 2.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 17 LKFLLVGDSDVGKQEILSGYKLE 39
LK LL+G + GK + ++
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRII 25
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 0.86
Identities = 13/148 (8%), Positives = 41/148 (27%), Gaps = 21/148 (14%)
Query: 62 KFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLDG 121
L VG D GK + L ++ + + + +
Sbjct: 2 AVLFVGLCDSGKTLLFV-RLLTGQY----------RDTQTSIT-----DSSAIYKVNNNR 45
Query: 122 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSF-----DGIDRWLKEVEEH 176
+ + ++ + A+ ++ V D + + + L +
Sbjct: 46 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMAL 105
Query: 177 APGVPKVLVGNRLHLAFNRTVTTREAEM 204
++ N+ +A ++ + ++
Sbjct: 106 KNSPSLLIACNKQDIAMAKSAKLIQQQL 133
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 28.0 bits (61), Expect = 2.3
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 89 FWLDGSSESPFCSGSGKYDDMLAYKTTTILLDGKRVKLQLWDTSGQGRFCT--IIRSYSR 146
L + ESP + D+ + T+ + ++ + + + + ++
Sbjct: 40 IVLGTTGESPTVN----EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKL 95
Query: 147 GAQGILLVYDITNKWSFDGIDRWLKEVEEHAPGVPKVLVGNRLHLAFNRTVTTREAEMYA 206
GA G+L+V NK + +G+ + K + + V+ N T
Sbjct: 96 GANGVLVVTPYYNKPTQEGLYQHYKYI-SERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154
Query: 207 IKNQMAFFEVSPLCD 221
+KN + E +P D
Sbjct: 155 LKNVVGIKEANPDID 169
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.5 bits (57), Expect = 4.1
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 19/175 (10%)
Query: 61 LKFLLVGDSDVGKQEILSGLYLESRFPRFWLDGSSESPFCSGSGKYDDMLAYKTTTILLD 120
L+ ++VG +VGK +L+ L E R + G++ S +L T +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVR 59
Query: 121 GKRVKLQLWDTSGQGRFCTIIRSYS--RGAQGILLVYDITNKWSFDGIDRWLKEVEEHAP 178
+T+ I R+ A +L V D ++ + + +
Sbjct: 60 S--------ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL 111
Query: 179 GVPKVLVGNRLHLAFNRTVTTREAEMYAIKNQMAFFEVSPLCDFNIRESFTELSR 233
V + E + ++S L + + + R
Sbjct: 112 VVI--------NKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYR 158
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 25.1 bits (55), Expect = 6.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 271 RNGMERLWRSNKGKHL 286
RN M +R N ++
Sbjct: 37 RNFMVNSYRLNPNEYF 52
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 26.3 bits (57), Expect = 8.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 339 LPLPNLIKSHLKSY 352
+PLP L + ++SY
Sbjct: 13 IPLPPLTEIQVESY 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,529,077
Number of extensions: 70353
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 117
Length of query: 432
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,199,356
Effective search space: 412578464
Effective search space used: 412578464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)