Query psy3451
Match_columns 223
No_of_seqs 74 out of 76
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 17:01:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09510 tolA cell envelope in 98.1 0.0069 1.5E-07 57.7 27.4 15 117-131 151-165 (387)
2 COG3064 TolA Membrane protein 97.5 0.089 1.9E-06 50.2 23.1 15 2-16 32-46 (387)
3 COG3064 TolA Membrane protein 95.9 1.7 3.7E-05 41.7 21.7 11 16-26 36-46 (387)
4 PF08260 Kinin: Insect kinin p 87.1 0.31 6.7E-06 23.7 0.7 8 19-26 1-8 (8)
5 KOG1029|consensus 57.6 2.6E+02 0.0057 30.5 13.3 8 7-14 275-282 (1118)
6 PF01705 CX: CX module; Inter 44.8 9.6 0.00021 27.4 0.6 13 3-15 27-39 (61)
7 KOG1029|consensus 41.5 5.2E+02 0.011 28.4 19.0 10 18-27 282-291 (1118)
8 PRK13859 type IV secretion sys 32.7 25 0.00055 25.8 1.2 21 11-31 19-39 (55)
9 PF06627 DUF1153: Protein of u 32.5 22 0.00047 28.4 0.9 25 5-29 10-34 (90)
10 KOG0894|consensus 26.4 36 0.00078 31.4 1.3 22 6-27 72-100 (244)
11 KOG3054|consensus 24.1 5.3E+02 0.011 24.6 8.4 85 15-100 87-175 (299)
12 PF12308 Noelin-1: Neurogenesi 22.3 39 0.00085 27.5 0.7 23 9-31 16-39 (101)
13 PLN02770 haloacid dehalogenase 21.8 50 0.0011 28.2 1.3 23 7-29 1-23 (248)
14 smart00326 SH3 Src homology 3 20.7 54 0.0012 20.4 1.0 25 5-29 17-41 (58)
No 1
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.12 E-value=0.0069 Score=57.67 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy3451 117 IRELAKEETSELTKE 131 (223)
Q Consensus 117 Ae~kAkeEa~~kake 131 (223)
+.+++.+++-.++..
T Consensus 151 a~~k~~~eaa~kaea 165 (387)
T PRK09510 151 AEAKRAAAAAKKAAA 165 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 2
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.089 Score=50.16 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=9.9
Q ss_pred CcccccccCCCcccc
Q psy3451 2 NTLDEMTFPNGRNIC 16 (223)
Q Consensus 2 ~~~~~~~~~~~~~ic 16 (223)
.+||+|+-|.|+.--
T Consensus 32 gS~~~~~e~~~gG~g 46 (387)
T COG3064 32 GSLDETIEASGGGGG 46 (387)
T ss_pred hhhhhcccccCCCCC
Confidence 467777777766544
No 3
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=1.7 Score=41.70 Aligned_cols=11 Identities=27% Similarity=0.099 Sum_probs=4.9
Q ss_pred ccCCCCCCCCC
Q psy3451 16 CMSSASPNSCG 26 (223)
Q Consensus 16 c~ss~s~nS~g 26 (223)
-|+..|++.-|
T Consensus 36 ~~~e~~~gG~g 46 (387)
T COG3064 36 ETIEASGGGGG 46 (387)
T ss_pred hcccccCCCCC
Confidence 34444444444
No 4
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=87.07 E-value=0.31 Score=23.66 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=6.9
Q ss_pred CCCCCCCC
Q psy3451 19 SASPNSCG 26 (223)
Q Consensus 19 s~s~nS~g 26 (223)
++|.||||
T Consensus 1 ~pafnswg 8 (8)
T PF08260_consen 1 DPAFNSWG 8 (8)
T ss_pred CccccccC
Confidence 57899998
No 5
>KOG1029|consensus
Probab=57.60 E-value=2.6e+02 Score=30.55 Aligned_cols=8 Identities=25% Similarity=0.330 Sum_probs=3.8
Q ss_pred cccCCCcc
Q psy3451 7 MTFPNGRN 14 (223)
Q Consensus 7 ~~~~~~~~ 14 (223)
+.-||++.
T Consensus 275 ~Vpp~~r~ 282 (1118)
T KOG1029|consen 275 LVPPSFRS 282 (1118)
T ss_pred hcCccccc
Confidence 33455554
No 6
>PF01705 CX: CX module; InterPro: IPR002619 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=44.83 E-value=9.6 Score=27.38 Aligned_cols=13 Identities=46% Similarity=0.808 Sum_probs=10.8
Q ss_pred cccccccCCCccc
Q psy3451 3 TLDEMTFPNGRNI 15 (223)
Q Consensus 3 ~~~~~~~~~~~~i 15 (223)
.|..++|||||..
T Consensus 27 el~~v~F~nGt~p 39 (61)
T PF01705_consen 27 ELGNVTFPNGTRP 39 (61)
T ss_pred cccceEccCCCcc
Confidence 4788999999864
No 7
>KOG1029|consensus
Probab=41.52 E-value=5.2e+02 Score=28.45 Aligned_cols=10 Identities=50% Similarity=0.355 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q psy3451 18 SSASPNSCGR 27 (223)
Q Consensus 18 ss~s~nS~gr 27 (223)
|+.|+||+.-
T Consensus 282 ~~rs~~sis~ 291 (1118)
T KOG1029|consen 282 SSRSANSISG 291 (1118)
T ss_pred cccCCCCccc
Confidence 4555555433
No 8
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=32.66 E-value=25 Score=25.83 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.6
Q ss_pred CCcccccCCCCCCCCCCCCcc
Q psy3451 11 NGRNICMSSASPNSCGRPETL 31 (223)
Q Consensus 11 ~~~~ic~ss~s~nS~gr~~~~ 31 (223)
+..-+|+|+.-|-|+|||..+
T Consensus 19 D~lAtckGpiFpLNVgrWqpt 39 (55)
T PRK13859 19 DTLASCKGPIFPLNVGRWQPT 39 (55)
T ss_pred CccccccCCccccccccccCC
Confidence 445689999999999999854
No 9
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=32.49 E-value=22 Score=28.41 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=15.0
Q ss_pred cccccCCCcccccCCCCCCCCCCCC
Q psy3451 5 DEMTFPNGRNICMSSASPNSCGRPE 29 (223)
Q Consensus 5 ~~~~~~~~~~ic~ss~s~nS~gr~~ 29 (223)
.-+|+|+|+.++-.|-.|.++-||.
T Consensus 10 ~~V~~PdG~~~t~adLP~~~t~RWv 34 (90)
T PF06627_consen 10 RYVTGPDGSPLTRADLPPPDTRRWV 34 (90)
T ss_dssp SEEE-TTS-EEETTTS--SS-S---
T ss_pred ceEECCCCCccccccCCCcccccch
Confidence 3579999999999999999999997
No 10
>KOG0894|consensus
Probab=26.36 E-value=36 Score=31.36 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=16.2
Q ss_pred ccccCCCc-----ccc--cCCCCCCCCCC
Q psy3451 6 EMTFPNGR-----NIC--MSSASPNSCGR 27 (223)
Q Consensus 6 ~~~~~~~~-----~ic--~ss~s~nS~gr 27 (223)
-|+-|||| .+| |||--|.||+-
T Consensus 72 ~MiTPNGRFktntRLCLSiSDfHPdsWNP 100 (244)
T KOG0894|consen 72 TMITPNGRFKTNTRLCLSISDFHPDSWNP 100 (244)
T ss_pred EEECCCCceecCceEEEeccccCcCcCCC
Confidence 48899996 467 45666889974
No 11
>KOG3054|consensus
Probab=24.14 E-value=5.3e+02 Score=24.57 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCccccchhhchhhhHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy3451 15 ICMSSASPNSCGRPETLQPEERGDKSAKEETSELAKEET----SELAKEKTSELAKEETSELAKEKTSELAKEETSELAK 90 (223)
Q Consensus 15 ic~ss~s~nS~gr~~~~k~~e~a~~kakeeae~kakeEa----e~kAkeEae~kAkeEaerkAkeEa~rkAkEEAerkAk 90 (223)
+.++..-|--.|....+-.+..+.-.+|++-......+- +++.++--+..-...-+....+++.++. ++..|+++
T Consensus 87 ~dg~ee~~e~~~~~~kigkkK~aKleakqerr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~-ee~~Rkak 165 (299)
T KOG3054|consen 87 GDGDEEEPEAGGLQAKIGKKKEAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKE-EEKERKAK 165 (299)
T ss_pred cccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhH-HHHHHHHH
Q ss_pred HHHHHHHHHH
Q psy3451 91 EKTRALAKEE 100 (223)
Q Consensus 91 eeae~kAkeE 100 (223)
++..++.-++
T Consensus 166 EE~arkeheE 175 (299)
T KOG3054|consen 166 EEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHH
No 12
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=22.29 E-value=39 Score=27.53 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.0
Q ss_pred cCCCcccccC-CCCCCCCCCCCcc
Q psy3451 9 FPNGRNICMS-SASPNSCGRPETL 31 (223)
Q Consensus 9 ~~~~~~ic~s-s~s~nS~gr~~~~ 31 (223)
-|+|+-||+- .|++|.|.+....
T Consensus 16 d~dGrCvCTVvaP~q~~CSrD~r~ 39 (101)
T PF12308_consen 16 DPDGRCVCTVVAPQQNLCSRDARS 39 (101)
T ss_pred CCCCCEEEEEecCCcchhccCccH
Confidence 4889999985 7999999988743
No 13
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=21.81 E-value=50 Score=28.25 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.8
Q ss_pred cccCCCcccccCCCCCCCCCCCC
Q psy3451 7 MTFPNGRNICMSSASPNSCGRPE 29 (223)
Q Consensus 7 ~~~~~~~~ic~ss~s~nS~gr~~ 29 (223)
||+..|.|...|-+|+..++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~k 23 (248)
T PLN02770 1 MTVSSGENSVESKSSLSGLAPLE 23 (248)
T ss_pred CccccCcccccccccccccCccC
Confidence 89999999999999999988864
No 14
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=20.72 E-value=54 Score=20.39 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred cccccCCCcccccCCCCCCCCCCCC
Q psy3451 5 DEMTFPNGRNICMSSASPNSCGRPE 29 (223)
Q Consensus 5 ~~~~~~~~~~ic~ss~s~nS~gr~~ 29 (223)
++++|.-|..|.-.+.+.+.|....
T Consensus 17 ~~l~~~~Gd~v~v~~~~~~~w~~~~ 41 (58)
T smart00326 17 DELSFKKGDIITVLEKSDDGWWKGR 41 (58)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEE
Confidence 6788899988887777767775443
Done!