Query psy3451
Match_columns 223
No_of_seqs 74 out of 76
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 17:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4sgb_I Potato inhibitor, PCI-1 37.8 11 0.00037 26.4 1.0 16 9-24 17-32 (51)
2 3pm0_A Cypib1, cytochrome P450 36.7 14 0.00049 31.5 1.8 31 3-33 368-402 (507)
3 3tbg_A Cytochrome P450 2D6; mo 30.5 12 0.00041 31.6 0.3 31 3-33 361-395 (479)
4 2lic_A Vitellogenin; lipid tra 29.4 54 0.0018 21.0 3.2 26 8-33 7-32 (35)
5 3i3k_A Lanosterol 14-alpha dem 29.1 18 0.00062 30.7 1.2 31 3-33 341-375 (461)
6 2knp_A Mcocc-1; disulfide-rich 26.1 21 0.0007 22.7 0.8 12 8-19 22-33 (33)
7 1i8x_A Granulin-1; two beta-ha 25.2 20 0.00068 22.4 0.6 18 7-26 8-25 (30)
8 2cib_A Cytochrome P450 51; hem 25.1 30 0.001 29.6 1.9 32 3-34 333-368 (455)
9 1fyb_A Na-propi, proteinase in 25.0 21 0.00073 28.3 0.8 17 8-24 75-91 (111)
10 3ld6_A Lanosterol 14-alpha dem 24.7 33 0.0011 29.3 2.0 31 3-33 341-375 (461)
11 3swz_A Steroid 17-alpha-hydrox 23.6 20 0.00068 30.7 0.5 31 3-33 362-396 (494)
12 3e6i_A CYPIIE1, P450-J, cytoch 23.3 26 0.0009 29.6 1.1 31 3-33 356-390 (476)
13 1r9o_A Cytochrome P450 2C9; mo 21.8 30 0.001 29.6 1.2 31 3-33 358-392 (477)
14 1po5_A Cytochrome P450 2B4; ox 21.4 30 0.001 29.6 1.1 32 3-34 357-392 (476)
15 3qz1_A Steroid 21-hydroxylase; 21.2 34 0.0012 29.1 1.5 31 3-33 371-405 (496)
16 2ve3_A Putative cytochrome P45 21.2 36 0.0012 29.0 1.6 31 3-33 330-364 (444)
17 1g26_A Granulin A, HGA; granul 21.2 21 0.0007 22.3 0.0 18 7-26 8-25 (31)
18 3nxu_A Cytochrome P450 3A4; al 20.4 33 0.0011 29.1 1.1 31 3-33 360-394 (485)
No 1
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=37.75 E-value=11 Score=26.36 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.6
Q ss_pred cCCCcccccCCCCCCC
Q psy3451 9 FPNGRNICMSSASPNS 24 (223)
Q Consensus 9 ~~~~~~ic~ss~s~nS 24 (223)
-+||+.||.|.++|++
T Consensus 17 ~~~GtfiCeGesdp~n 32 (51)
T 4sgb_I 17 SANGAFICEGQSDPKK 32 (51)
T ss_dssp CTTCCEEEECCBCTTS
T ss_pred cCCCCEEeccccCCCC
Confidence 4789999999998865
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=36.71 E-value=14 Score=31.50 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=25.0
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..+||-|+.|+.+. -||..|++|....|
T Consensus 368 ~~~g~~ip~Gt~v~~~~~~~~~d~~~~~dp~~F~P 402 (507)
T 3pm0_A 368 SVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDP 402 (507)
T ss_dssp EETTEEECTTCEEEEBSHHHHSCTTTCSSSSSCCG
T ss_pred eEcCEEECCCCEEEeChHHHhCCcccCCCcCccCC
Confidence 46778999999999887 57888888876554
No 3
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=30.49 E-value=12 Score=31.62 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=24.8
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~ 33 (223)
+|+.+++|-|+.++++.. |+..|++|....|
T Consensus 361 ~~~g~~IP~Gt~V~~~~~~~h~d~~~~~dP~~F~P 395 (479)
T 3tbg_A 361 EVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHP 395 (479)
T ss_dssp EETTEEECTTCEEEEEHHHHHTCTTTSSSTTSCCG
T ss_pred eECCEEecCCCeeeechhhhcCChhhCCCccccCc
Confidence 578889999999998764 7788988876554
No 4
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=29.42 E-value=54 Score=21.04 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=16.7
Q ss_pred ccCCCcccccCCCCCCCCCCCCcccc
Q psy3451 8 TFPNGRNICMSSASPNSCGRPETLQP 33 (223)
Q Consensus 8 ~~~~~~~ic~ss~s~nS~gr~~~~k~ 33 (223)
.|.-.+.|.+||+|..|...-...+|
T Consensus 7 ilnlrtdistssssissseendfwqp 32 (35)
T 2lic_A 7 ILNLRTDISTSSSSISSSEENDFWQP 32 (35)
T ss_dssp SSSCSSSSCSCSSCCSTTCSCSSCCC
T ss_pred HHHhhhccccccccccccccccccCC
Confidence 34445778888888777665544444
No 5
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=29.14 E-value=18 Score=30.71 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=24.2
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..+||.|+.+|.+. -||..|++|....|
T Consensus 341 ~~~g~~ip~G~~v~~~~~~~~~d~~~~~~p~~F~P 375 (461)
T 3i3k_A 341 TVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNP 375 (461)
T ss_dssp EETTEEECTTCEEEECHHHHTTCTTTCTTTTCCCG
T ss_pred cCCCEEECCCCEEEEChHHhcCCcccCCCcccCCC
Confidence 46788999999998764 46778988876554
No 6
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=26.13 E-value=21 Score=22.74 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=9.7
Q ss_pred ccCCCcccccCC
Q psy3451 8 TFPNGRNICMSS 19 (223)
Q Consensus 8 ~~~~~~~ic~ss 19 (223)
|+..|-.||.||
T Consensus 22 tvtpgvgicsss 33 (33)
T 2knp_A 22 TVTPGVGICSSS 33 (33)
T ss_dssp CSSTTEEEECCC
T ss_pred ccCCCeeeecCC
Confidence 667789999876
No 7
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=25.25 E-value=20 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=13.0
Q ss_pred cccCCCcccccCCCCCCCCC
Q psy3451 7 MTFPNGRNICMSSASPNSCG 26 (223)
Q Consensus 7 ~~~~~~~~ic~ss~s~nS~g 26 (223)
.+-|+|+|-|.. +.++||
T Consensus 8 ~~CP~~~TCC~~--~~G~WG 25 (30)
T 1i8x_A 8 TICPDGTTCSLS--PYGVWY 25 (30)
T ss_dssp CCCCTTEEEEEC--TTSCEE
T ss_pred ccCCCCCeeecc--CCCCEe
Confidence 347999999883 346887
No 8
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=25.07 E-value=30 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=24.8
Q ss_pred cccccccCCCcccccC----CCCCCCCCCCCccccc
Q psy3451 3 TLDEMTFPNGRNICMS----SASPNSCGRPETLQPE 34 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~s----s~s~nS~gr~~~~k~~ 34 (223)
+|+.++||-|+.++.+ .-||..|.+|....|.
T Consensus 333 ~l~g~~Ip~Gt~V~~~~~~~~rdp~~~~dP~~F~Pe 368 (455)
T 2cib_A 333 EVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPA 368 (455)
T ss_dssp EETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCGG
T ss_pred eECCEEECCCCEEEEChHHhcCCcccCCCccccCcc
Confidence 5678899999999987 4567788888766653
No 9
>1fyb_A Na-propi, proteinase inhibitor; two-domain protein, hydrolase inhibitor; NMR {Nicotiana alata} SCOP: g.69.1.1 g.69.1.1 PDB: 2jyy_A 1ytp_A
Probab=25.04 E-value=21 Score=28.30 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.4
Q ss_pred ccCCCcccccCCCCCCC
Q psy3451 8 TFPNGRNICMSSASPNS 24 (223)
Q Consensus 8 ~~~~~~~ic~ss~s~nS 24 (223)
...||+-||+|-++|++
T Consensus 75 fsaDGtfiCeGEsdp~~ 91 (111)
T 1fyb_A 75 FSDDGTFVCEGESDPRN 91 (111)
T ss_dssp EETTTEEEEECCCCTTC
T ss_pred ECCCCcEEecCCCCCCC
Confidence 46899999999999765
No 10
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=24.72 E-value=33 Score=29.28 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=24.4
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..++|.|+.++++. -|+..|++|....|
T Consensus 341 ~~~g~~ip~Gt~v~~~~~~~~~d~~~~~dP~~F~P 375 (461)
T 3ld6_A 341 TVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNP 375 (461)
T ss_dssp EETTEEECTTCEEEECHHHHTTCTTTCTTTTSCCG
T ss_pred eeCCcccCCCCeeeechHhhcCCccccCCccccCc
Confidence 57788999999998764 46778998876554
No 11
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.58 E-value=20 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=23.8
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~ 33 (223)
+|+.+++|-|+.|+++.. ||.-|++|....|
T Consensus 362 ~~~g~~ip~Gt~v~~~~~~~~~d~~~~~dp~~F~P 396 (494)
T 3swz_A 362 SIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMP 396 (494)
T ss_dssp EETTEEECTTCEEEECHHHHHHCTTTSSSTTSCCG
T ss_pred eECCEEeCCCCEEEEehHHhhCCcccCCCcccCCc
Confidence 467789999999998754 5677888876554
No 12
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=23.29 E-value=26 Score=29.55 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=23.6
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~ 33 (223)
+|+..+||.|+.++.+.. ||..|.+|....|
T Consensus 356 ~~~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~P 390 (476)
T 3e6i_A 356 IFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKP 390 (476)
T ss_dssp EETTEEECTTCEEEECSHHHHTCTTTSSSTTSCCG
T ss_pred eEcCEEeCCCCEEEechHHhhCCcccCCCccccCc
Confidence 467789999999998764 6677877776554
No 13
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=21.77 E-value=30 Score=29.61 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.3
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~ 33 (223)
+|+.++||-|+.++++.. ||.-|.+|....|
T Consensus 358 ~~~g~~Ip~Gt~V~~~~~~~~rd~~~~~dP~~F~P 392 (477)
T 1r9o_A 358 KFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDP 392 (477)
T ss_dssp EETTEEECTTCEEEECSHHHHTCTTTSSSTTSCCG
T ss_pred cccceecCCCCEEEEecHHhhCCcccCCCccccCc
Confidence 567889999999998854 6677888876655
No 14
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=21.38 E-value=30 Score=29.64 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=24.3
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCccccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQPE 34 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~~ 34 (223)
+|+.+++|-|+.++++. -||.-|.+|....|.
T Consensus 357 ~~~g~~Ip~Gt~v~~~~~~~~rdp~~~~dp~~F~Pe 392 (476)
T 1po5_A 357 QFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPG 392 (476)
T ss_dssp EETTEEECTTCEEEECHHHHHTCTTTCSSTTSCCGG
T ss_pred eecCEecCCCCEEEeehHhHhcCccccCCccccCch
Confidence 56788999999998874 466778888766553
No 15
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=21.23 E-value=34 Score=29.11 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=23.1
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..++|-|+.++++. -||..|.+|....|
T Consensus 371 ~~~g~~ip~Gt~v~~~~~~~~~d~~~~~dp~~F~P 405 (496)
T 3qz1_A 371 SIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRP 405 (496)
T ss_dssp ECSSSEECTTCEEEECHHHHTTCTTTSSSTTSCCC
T ss_pred eECCEEeCCCCEEEechHHhhCChhhcCCcccCCc
Confidence 46788999999988765 56677877765544
No 16
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=21.19 E-value=36 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=23.7
Q ss_pred cccccccCCCcccccC----CCCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMS----SASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~s----s~s~nS~gr~~~~k~ 33 (223)
+|+..++|-|+.++.+ .-||..|.+|....|
T Consensus 330 ~l~G~~Ip~Gt~V~~~~~~~~rdp~~~~dP~~F~P 364 (444)
T 2ve3_A 330 QFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDP 364 (444)
T ss_dssp EETTEEECTTCEEEEEHHHHTTCTTTSSSTTSCCG
T ss_pred eECCEEECCCCEEEechHHhcCChhhcCCcCccCc
Confidence 5678899999999877 456777888776554
No 17
>1g26_A Granulin A, HGA; granulin/epithelin protein repeats, beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1
Probab=21.16 E-value=21 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=13.9
Q ss_pred cccCCCcccccCCCCCCCCC
Q psy3451 7 MTFPNGRNICMSSASPNSCG 26 (223)
Q Consensus 7 ~~~~~~~~ic~ss~s~nS~g 26 (223)
.+-|+|+|=|.++ .++||
T Consensus 8 ~~Cp~~~TCC~~~--~g~wg 25 (31)
T 1g26_A 8 VICPDGYTCCRLP--SGAWG 25 (31)
T ss_dssp EEECTTEEEEECT--TSCEE
T ss_pred CccCCCCeecCCC--CCCeE
Confidence 4569999999877 55776
No 18
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=20.41 E-value=33 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=24.4
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..+||-|+.++++. -||..|.+|....|
T Consensus 360 ~i~g~~Ip~Gt~V~~~~~~~~~d~~~~~dp~~F~P 394 (485)
T 3nxu_A 360 EINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLP 394 (485)
T ss_dssp EETTEEECTTCEEEECHHHHHTCTTTCSSTTSCCG
T ss_pred eECCEEECCCCEEEEchHHhcCChhhcCCccCcCc
Confidence 46788999999998876 46777888876655
Done!