Query psy3451
Match_columns 223
No_of_seqs 74 out of 76
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 17:02:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3451.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3451hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oa4a1 a.4.12.3 (A:1-93) Unch 55.4 2.5 0.00018 30.7 1.9 24 6-29 12-35 (93)
2 d1nyra2 d.15.10.1 (A:4-62) Thr 43.2 5.2 0.00038 25.7 1.7 16 7-22 3-18 (59)
3 d4sgbi_ g.69.1.1 (I:) Plant ch 42.0 3.8 0.00028 27.0 0.9 16 9-24 17-32 (51)
4 d1tiha_ g.69.1.1 (A:) Multidom 38.6 5 0.00036 26.6 1.1 16 9-24 18-33 (53)
5 d1srza_ g.18.1.1 (A:) GABA-B r 33.2 7 0.00051 25.8 1.1 21 7-27 13-33 (68)
6 d1s1fa_ a.104.1.1 (A:) Cyp158a 33.2 4.9 0.00036 31.5 0.4 32 3-34 295-330 (399)
7 d1pjua1 g.69.1.1 (A:16-74) Wou 32.2 5.7 0.00041 26.8 0.5 16 9-24 26-41 (59)
8 d1izoa_ a.104.1.1 (A:) Cytochr 29.5 7.7 0.00056 30.5 1.0 31 3-33 297-331 (411)
9 d1r9oa_ a.104.1.1 (A:) Mammali 28.4 6.7 0.00049 30.4 0.4 31 3-33 350-384 (467)
10 d2ciba1 a.104.1.1 (A:5-449) Cy 27.6 12 0.00088 29.3 1.9 31 3-33 329-363 (445)
11 d3czha1 a.104.1.1 (A:40-502) V 26.0 9.8 0.00071 29.1 1.0 31 3-33 349-383 (463)
12 d1oyvi_ g.69.1.1 (I:) Wound-in 23.7 11 0.00081 28.2 0.9 16 9-24 41-56 (116)
13 d1c0pa2 d.16.1.3 (A:1194-1288) 22.1 11 0.00084 24.8 0.6 22 8-29 33-54 (95)
No 1
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=55.40 E-value=2.5 Score=30.72 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=22.2
Q ss_pred ccccCCCcccccCCCCCCCCCCCC
Q psy3451 6 EMTFPNGRNICMSSASPNSCGRPE 29 (223)
Q Consensus 6 ~~~~~~~~~ic~ss~s~nS~gr~~ 29 (223)
-+|+|||+....+|=.|.++-+|.
T Consensus 12 ~vt~pdgs~~t~~dLp~~~trRWv 35 (93)
T d2oa4a1 12 SVTLPDGSIMTRADLPPANTRRWV 35 (93)
T ss_dssp EEECSSSCEEETTSSCCSCCSCCC
T ss_pred eeeCCCCCccccccCCCccccccc
Confidence 479999999999999999999998
No 2
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=43.25 E-value=5.2 Score=25.66 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=12.1
Q ss_pred cccCCCcccccCCCCC
Q psy3451 7 MTFPNGRNICMSSASP 22 (223)
Q Consensus 7 ~~~~~~~~ic~ss~s~ 22 (223)
+|||||...+....++
T Consensus 3 ItlPDG~~~~~~~g~T 18 (59)
T d1nyra2 3 IQFPDGNKKAFDKGTT 18 (59)
T ss_dssp BCCTTSCCCBCCTTCC
T ss_pred EECCCCCEEEcCCCCC
Confidence 6899998887776543
No 3
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=41.96 E-value=3.8 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.5
Q ss_pred cCCCcccccCCCCCCC
Q psy3451 9 FPNGRNICMSSASPNS 24 (223)
Q Consensus 9 ~~~~~~ic~ss~s~nS 24 (223)
-.||+-||.|.++|+|
T Consensus 17 s~dGtFvCeGeSdp~n 32 (51)
T d4sgbi_ 17 SANGAFICEGQSDPKK 32 (51)
T ss_dssp CTTCCEEEECCBCTTS
T ss_pred cCCCcEEeCCCCCCCC
Confidence 3689999999998776
No 4
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=38.59 E-value=5 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=13.5
Q ss_pred cCCCcccccCCCCCCC
Q psy3451 9 FPNGRNICMSSASPNS 24 (223)
Q Consensus 9 ~~~~~~ic~ss~s~nS 24 (223)
-.||+-||.|.++|+|
T Consensus 18 s~dgtfiCeGesdp~n 33 (53)
T d1tiha_ 18 SDDGTFVCEGESDPRN 33 (53)
T ss_dssp ETTTEEEECCCCCSSS
T ss_pred cCCccEEeCCCCCCCC
Confidence 3689999999998766
No 5
>d1srza_ g.18.1.1 (A:) GABA-B receptor 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.21 E-value=7 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=15.6
Q ss_pred cccCCCcccccCCCCCCCCCC
Q psy3451 7 MTFPNGRNICMSSASPNSCGR 27 (223)
Q Consensus 7 ~~~~~~~~ic~ss~s~nS~gr 27 (223)
+||+||.-+|.++..+-..|.
T Consensus 13 ~ti~NG~v~~~~~~~~~~~G~ 33 (68)
T d1srza_ 13 LTLENGKVFLTGGDLPALDGA 33 (68)
T ss_dssp GEETTEEEECCCCSCSTTTTC
T ss_pred CcccCCEEEeCCCCccccCCC
Confidence 589999999988766554444
No 6
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}
Probab=33.18 E-value=4.9 Score=31.50 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=25.7
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCccccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQPE 34 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~~ 34 (223)
+|+..+||-|+.++.|.. ||+.|.+|....|.
T Consensus 295 ~l~G~~ip~Gt~V~~~~~~~~rdp~~~~dP~~F~Pe 330 (399)
T d1s1fa_ 295 EIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFE 330 (399)
T ss_dssp EETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCTT
T ss_pred eccceeecCCCeecccccccccChhhcCCccccCCC
Confidence 577789999999998876 77888888876653
No 7
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=32.21 E-value=5.7 Score=26.75 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.3
Q ss_pred cCCCcccccCCCCCCC
Q psy3451 9 FPNGRNICMSSASPNS 24 (223)
Q Consensus 9 ~~~~~~ic~ss~s~nS 24 (223)
-.||+-||.|.++|++
T Consensus 26 s~dGtfiCeGesdp~n 41 (59)
T d1pjua1 26 NSFGKFICEGESDPKR 41 (59)
T ss_dssp CTTCCEEEECCBBTTB
T ss_pred cCCCcEEeCCcCCCCC
Confidence 3689999999998765
No 8
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]}
Probab=29.50 E-value=7.7 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=24.4
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+|+..+||.|+.++.+. -||+-|.+|.+..|
T Consensus 297 ~i~g~~ipkgt~V~~~~~~~~~dp~~~~~p~~F~P 331 (411)
T d1izoa_ 297 VWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRP 331 (411)
T ss_dssp EETTEEECTTCEEEEEHHHHHTCTTTSSSTTSCCG
T ss_pred ccceeecccccchhhhhhhhhcccccCCCccccCc
Confidence 57788999999999876 56677888876655
No 9
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.39 E-value=6.7 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.0
Q ss_pred cccccccCCCcccccCCC----CCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSSA----SPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss~----s~nS~gr~~~~k~ 33 (223)
+++..+||.|+.|++++. |++.|.+|....|
T Consensus 350 ~~~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P 384 (467)
T d1r9oa_ 350 KFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDP 384 (467)
T ss_dssp EETTEEECTTCEEEECSHHHHTCTTTSSSTTSCCG
T ss_pred ccceeEEecCCccccchhhhcCCcccCcCcceeCc
Confidence 357889999999999775 5777888876554
No 10
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.64 E-value=12 Score=29.31 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=23.7
Q ss_pred cccccccCCCcccccC----CCCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMS----SASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~s----s~s~nS~gr~~~~k~ 33 (223)
+|+.++||.|+.+|++ .-+|.-|.+|....|
T Consensus 329 ~~~~~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P 363 (445)
T d2ciba1 329 EVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVP 363 (445)
T ss_dssp EETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCG
T ss_pred ccceeeccccccccccccccccCcccCCChhhCCc
Confidence 4677899999999988 456677888776554
No 11
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.99 E-value=9.8 Score=29.08 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=24.1
Q ss_pred cccccccCCCcccccCC----CCCCCCCCCCcccc
Q psy3451 3 TLDEMTFPNGRNICMSS----ASPNSCGRPETLQP 33 (223)
Q Consensus 3 ~~~~~~~~~~~~ic~ss----~s~nS~gr~~~~k~ 33 (223)
+++.++||-|+.++.+. -|+..|.+|....|
T Consensus 349 ~~~g~~ipkG~~v~~~~~~~~~d~~~~~dp~~F~P 383 (463)
T d3czha1 349 VVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHP 383 (463)
T ss_dssp EETTEEECTTCEEEEEHHHHHTCTTTCSSTTSCCG
T ss_pred ccCCcEECCCCcccCcHHHhhCCcccCCChhhcCc
Confidence 47788999999998884 46778888776554
No 12
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=23.68 E-value=11 Score=28.18 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.0
Q ss_pred cCCCcccccCCCCCCC
Q psy3451 9 FPNGRNICMSSASPNS 24 (223)
Q Consensus 9 ~~~~~~ic~ss~s~nS 24 (223)
-.|||-||.|.++|+|
T Consensus 41 sadGtfiCeGesdp~n 56 (116)
T d1oyvi_ 41 NSFGKFICEGESDPKR 56 (116)
T ss_dssp CTTSCEEEECCBCSSS
T ss_pred cCCCcEEecCccCCCC
Confidence 4689999999999876
No 13
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}
Probab=22.05 E-value=11 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=17.0
Q ss_pred ccCCCcccccCCCCCCCCCCCC
Q psy3451 8 TFPNGRNICMSSASPNSCGRPE 29 (223)
Q Consensus 8 ~~~~~~~ic~ss~s~nS~gr~~ 29 (223)
..|||+-+|+|....|.|..-.
T Consensus 33 pr~~g~vviG~T~e~~~~d~~~ 54 (95)
T d1c0pa2 33 PRPGGEVICGGTYGVGDWDLSV 54 (95)
T ss_dssp EETTTEEEEECCCEETCCCCSC
T ss_pred ECCCCEEEEEEEEEECCCcCCC
Confidence 3478999999999988875533
Done!