RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3451
(223 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.5 bits (121), Expect = 1e-07
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 24 SCGRPETLQPEERGDKSAKEETSELAK-----EETSELAKEKTSELAKEETSELAKEKTS 78
C R + E + K K E + K E KE S L K
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 79 ELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAK 138
E+ +E + L E +EEI +L KE T++KT E
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014
Query: 139 EETRELANEETSELAKEETS-ELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKT 197
++ + + SEL ++ T + KE+ ++ +E+ + ++L +E K+
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET-----KQLE 1069
Query: 198 RELAKEKTR 206
+L E+ R
Sbjct: 1070 LDLNDERLR 1078
Score = 48.6 bits (116), Expect = 6e-07
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 7/182 (3%)
Query: 47 ELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAK 106
L + + + +E S + ++ + L R +AK E ++L
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911
Query: 107 EKTRELAKEEIRELAKEETSELT-------KEKTRELAKEETRELANEETSELAKEETSE 159
E +++ + + +L KE L K E+ +E + +
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 160 LAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
L + +E+ +L KE + ++KT E +K + ++ + EL ++
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 220 ET 221
T
Sbjct: 1032 NT 1033
Score = 47.0 bits (112), Expect = 2e-06
Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 7/195 (3%)
Query: 30 TLQPEERGDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELA 89
+Q +R K + ++ T L L + + + +E S + ++
Sbjct: 821 IIQKFQRMYVVRKRY--QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWL 878
Query: 90 KEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEET 149
+ L R +AK E+++L E S +K + + +L +
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID 938
Query: 150 SELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKE-----K 204
+ + ++ ET +L + R EE + A + L +E K
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 205 TRELAKEEIRELAKE 219
+ E + + +
Sbjct: 999 ELHQTQTEKKTIEEW 1013
Score = 32.4 bits (74), Expect = 0.12
Identities = 19/148 (12%), Positives = 52/148 (35%), Gaps = 2/148 (1%)
Query: 72 LAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKE 131
A+ + L + + + ++ R + + ++ T L L + + + +E
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Query: 132 KTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRE 191
+ ++ R + L R +AK E ++L E ++
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924
Query: 192 LAKEKTRELAKEKTRELAKEEIRELAKE 219
+ K +L ++ + +E + L ++
Sbjct: 925 GLENKIMQL--QRKIDEQNKEYKSLLEK 950
Score = 31.2 bits (71), Expect = 0.30
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 1/126 (0%)
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEET 157
++ T L L + + + + +E S + ++ R + L
Sbjct: 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898
Query: 158 SELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELA 217
+AK + ++L K E R + + K + E + K E KE L K E+
Sbjct: 899 RMMAKRELKKL-KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 218 KEETNS 223
Sbjct: 958 YSTETE 963
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 47.5 bits (113), Expect = 1e-06
Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 1/177 (0%)
Query: 39 KSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAK 98
+ E + + +EE + + +++ +L ++ E A + +L K K
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 99 EETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETS 158
+ ++ + + + R+L +E S+LT E K + + + E
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Query: 159 ELAKE-KPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIR 214
L KE K R+ ++ R+L E + + + + + +K EL R
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Score = 45.6 bits (108), Expect = 5e-06
Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 1/187 (0%)
Query: 34 EERGDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKT 93
E + K+E E+ E + + +EE + + +++ +L ++
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 94 RALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELA 153
A + +L K K+ ++ E K R+L +E +L E
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 154 KEETSELAKEKPRELAKEETRELAKE-KTRELAKEETRELAKEKTRELAKEKTRELAKEE 212
K + K K + E L KE K+R+ ++ R+L E + + + E
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 213 IRELAKE 219
++ +
Sbjct: 1086 LKAQLAK 1092
Score = 45.6 bits (108), Expect = 6e-06
Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 6/183 (3%)
Query: 38 DKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALA 97
D K+ ++ E K +L +E S+L E K + K K ++
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 98 KEETRELAKE-KTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEE 156
E L KE K+R+ ++ R+L E + + + E + ++ EL
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Query: 157 TSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIREL 216
+ + A ++ REL + +L EK EK + EE+ L
Sbjct: 1102 ARLEDETSQKNNALKKIRELESH-----ISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 217 AKE 219
E
Sbjct: 1157 KTE 1159
Score = 44.1 bits (104), Expect = 2e-05
Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 38 DKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALA 97
++ A + +L K K+ ++ E K +L +E S+L
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANE-ETSELAKEE 156
K + K K + E L KEE S EK + + E+ +L + + E
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 157 TSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEK---TRELAKEKT-RELAKEE 212
+K EL R + + A ++ REL +L EK R A+++
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 213 IRELAKE 219
R+L++E
Sbjct: 1146 KRDLSEE 1152
Score = 43.7 bits (103), Expect = 2e-05
Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 7/192 (3%)
Query: 35 ERGDKSAKEETSELAKEETSELAKEKTSEL-------AKEETSELAKEKTSELAKEETSE 87
E+ EE + L ++ +E +E K+E E+ E + + +EE
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 88 LAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANE 147
+ + +++ +L ++ E A + +L K K+ ++ E +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 148 ETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRE 207
+ +L +E S+L E K + K K + E L KE+ EK +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 208 LAKEEIRELAKE 219
+ E +L ++
Sbjct: 1064 KLEGESSDLHEQ 1075
Score = 43.3 bits (102), Expect = 3e-05
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 4/190 (2%)
Query: 34 EERGDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKE-K 92
E++ +K KE +L +E S+L E K + K K + E L KE K
Sbjct: 996 EDQNNKLTKER--KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 93 TRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSEL 152
+R ++ R+L E + + + E +K EL R
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 153 AKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEE 212
A ++ EL +L ++ E A E K + E + EL ++E
Sbjct: 1114 ALKKIRELESHI-SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
Query: 213 IRELAKEETN 222
+R ++ +
Sbjct: 1173 LRGSDYKDDD 1182
Score = 39.0 bits (91), Expect = 9e-04
Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 3/165 (1%)
Query: 55 ELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAK 114
E+ + +E + A+ + EL ++ T ++ + EL E +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 115 EEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETR 174
+ K+E E+ E + +EE R + + +++ +L ++ E A +
Sbjct: 918 LAAK---KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 175 ELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
+L K K+ ++ + + K R+L +E + +L
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 36.0 bits (83), Expect = 0.009
Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 12/178 (6%)
Query: 39 KSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAK 98
K +E S+L E K K K + + E L KEE S EK + +
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 99 EETRELAK-----EKTRELAKEEIRELAKE------ETSELTKEKTRELAKEETRELANE 147
E+ +L + + K ++ + +E + T +K L K E
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 148 ETSELAKEETSELAK-EKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEK 204
+ E + E + K EK + EE L E L T++ + + +K
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 36.0 bits (83), Expect = 0.009
Identities = 28/181 (15%), Positives = 65/181 (35%), Gaps = 7/181 (3%)
Query: 50 KEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKT 109
EE + + A+ + E + E +L E EE R K
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 110 RELAK-----EEIRELAKEETSELTKEKTR-ELAKEETRELANEETSELAKEETSELAKE 163
+EL + E E +E + +L EK + + + E EE + K + ++ +
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 164 KPRELAKEETRELAKEKTRELA-KEETRELAKEKTRELAKEKTRELAKEEIRELAKEETN 222
+ +++ + + + ++ E + T LA+E+ + +++ + +
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Query: 223 S 223
Sbjct: 1043 E 1043
Score = 28.6 bits (64), Expect = 1.9
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 29 ETLQPEERGDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSEL 88
L+ EE+ + ++ +L E + + + E +K EL
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 89 AKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTK-EKTRELAKEETRELANE 147
+ + A ++ REL +++E + E + K EK + EE L E
Sbjct: 1106 DETSQKNNALKKIRELESH------ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Query: 148 -ETSELAKEETSELAKEKPREL 168
E + EL ++
Sbjct: 1160 LEDTLDTTATQQELRGSDYKDD 1181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-04
Identities = 31/241 (12%), Positives = 73/241 (30%), Gaps = 68/241 (28%)
Query: 14 NICMSSASPNSCGRPETLQPEERGDKSAKEETSELAKEE-------------TSELAKE- 59
+ PN R + + S + E L K + ++
Sbjct: 204 KLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 60 ----KTSELA----KEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRE 111
K L K+ T L+ T+ ++ + S L +E + L
Sbjct: 263 NLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSM-------TLTPDEVKSL------- 306
Query: 112 LAK---EEIRELAKEETS------ELTKEKTRELAK--EETRELANEETSELAKEETSEL 160
L K ++L +E + + E R+ + + + ++ + + + S L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSL 363
Query: 161 AKEKPRELAKEETRELA--------KEKT-----RELAKEETRELAKE-KTRELAKEKTR 206
+P E ++ L+ ++ K + + + L +++ +
Sbjct: 364 NVLEPAEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 207 E 207
E
Sbjct: 423 E 423
Score = 32.9 bits (74), Expect = 0.082
Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 20/120 (16%)
Query: 117 IRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAK------ 170
+ ++ ++ K L+KEE + + + K E+ +
Sbjct: 30 VDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 171 ---------EETRELAKEKTRELAK-EETRELAKEKTRELAKEK-TRELAKEEIRELAKE 219
+ ++ + E R+ + AK +R ++R+ E
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 36.1 bits (83), Expect = 0.007
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 106 KEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKP 165
+ L +EE E+ + + E + ++ +E K P
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEK 204
E R+ E ++ ++ E
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEA 105
Score = 34.6 bits (79), Expect = 0.026
Identities = 15/95 (15%), Positives = 29/95 (30%)
Query: 125 TSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTREL 184
+S L + +EE E+AN++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 185 AKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
E R+ E ++ ++ E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE 104
Score = 34.2 bits (78), Expect = 0.028
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 3/139 (2%)
Query: 53 TSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTREL 112
+S L + +EE E+A + + E + +K K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 113 AKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEE 172
E +R+ E E + +E +A + PR
Sbjct: 70 TIENLRQAYLRMGFE---EYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 173 TRELAKEKTRELAKEETRE 191
++++ + + E +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 34.2 bits (78), Expect = 0.030
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)
Query: 37 GDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRAL 96
G +S L + +E+ E+A ++ + E + ++ +E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 97 AKE----ETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSEL 152
K +T E ++ + EE + ++ K E + L
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYK-----QFGPEAMA-VLDRCFYL 115
Query: 153 AKEETSELAKEKPRELAKEETRELAKEKTRELAK 186
A ++ + E+ E L K
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Score = 32.3 bits (73), Expect = 0.12
Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 5/139 (3%)
Query: 74 KEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKE-- 131
+S L + +E+ +A ++ + E + ++I E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 132 --KTRELAKEETRELANEE-TSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEE 188
T E ++ + EE + + +E + P +A + R
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 189 TRELAKEKTRELAKEKTRE 207
++++ + + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 30.3 bits (68), Expect = 0.48
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 173 TRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKEE 220
+ L + +EE E+A + + E + ++I E
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRI 57
Score = 29.6 bits (66), Expect = 0.93
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 1/135 (0%)
Query: 43 EETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETR 102
+ +EE E+A + + E + +K +E K E R
Sbjct: 16 RGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLR 75
Query: 103 ELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSEL-A 161
+ E + ++ + E L + L+ E+ S++
Sbjct: 76 QAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEK 135
Query: 162 KEKPRELAKEETREL 176
KE +++
Sbjct: 136 LGIKVSEHKESLQKI 150
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 35.3 bits (81), Expect = 0.014
Identities = 13/103 (12%), Positives = 27/103 (26%)
Query: 106 KEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKP 165
+ L +EE E+ + + E + ++ +E K P
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTREL 208
E R+ E ++ ++ E L
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVL 109
Score = 33.4 bits (76), Expect = 0.055
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)
Query: 37 GDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRAL 96
G +S L + +E+ E+A ++ + E + ++ +E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 97 AKE----ETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSEL 152
K +T E ++ + EE + ++ K E + L
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYK-----QFGPEAMA-VLDRCFYL 115
Query: 153 AKEETSELAKEKPRELAKEETRELAKEKTRELAK 186
A ++ + E+ E L K
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Score = 33.0 bits (75), Expect = 0.069
Identities = 15/95 (15%), Positives = 29/95 (30%)
Query: 125 TSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTREL 184
+S L + +EE E+AN++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 185 AKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
E R+ E ++ ++ E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE 104
Score = 30.3 bits (68), Expect = 0.56
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 3/139 (2%)
Query: 69 TSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSEL 128
+S L + +EE E+A + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 129 TKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEE 188
T E R+ E E + + +E + P +A + R
Sbjct: 70 TIENLRQAYLRMGFE---EYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 189 TRELAKEKTRELAKEKTRE 207
++++ + + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 29.6 bits (66), Expect = 0.99
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 173 TRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKEE 220
+ L + +EE E+A + + E + ++I E
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRI 57
Score = 28.4 bits (63), Expect = 2.0
Identities = 14/125 (11%), Positives = 32/125 (25%)
Query: 90 KEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEET 149
+ L + +E+ E+A ++ + E + +K E
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 150 SELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELA 209
E + E ++ ++ E L + L+
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 210 KEEIR 214
E+I
Sbjct: 127 DEKIS 131
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 34.6 bits (79), Expect = 0.025
Identities = 13/103 (12%), Positives = 27/103 (26%)
Query: 106 KEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKP 165
+ L +EE E+ + + E + ++ +E K P
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTREL 208
E R+ E ++ ++ E L
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVL 109
Score = 32.6 bits (74), Expect = 0.085
Identities = 18/136 (13%), Positives = 40/136 (29%)
Query: 53 TSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTREL 112
+S L + +EE E+A + + E + +K K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 113 AKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEE 172
E +R+ E ++ ++ E + L + L+ E+
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 173 TRELAKEKTRELAKEE 188
++ K + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 32.3 bits (73), Expect = 0.11
Identities = 15/96 (15%), Positives = 29/96 (30%)
Query: 125 TSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTREL 184
+S L + +EE E+AN++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 185 AKEETRELAKEKTRELAKEKTRELAKEEIRELAKEE 220
E R+ E ++ ++ E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEA 105
Score = 32.3 bits (73), Expect = 0.12
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)
Query: 37 GDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRAL 96
G +S L + +E+ E+A ++ + E + ++ +E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 97 AKE----ETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSEL 152
K +T E ++ + EE + ++ K E + L
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYK-----QFGPEAMA-VLDRCFYL 115
Query: 153 AKEETSELAKEKPRELAKEETRELAKEKTRELAK 186
A ++ + E+ E L K
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Score = 29.6 bits (66), Expect = 0.91
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 3/139 (2%)
Query: 69 TSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSEL 128
+S L + +EE E+A + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 129 TKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEE 188
T E R+ E E + + +E + P +A + R
Sbjct: 70 TIENLRQAYLRMGFE---EYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 189 TRELAKEKTRELAKEKTRE 207
++++ + + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 27.6 bits (61), Expect = 3.8
Identities = 14/125 (11%), Positives = 32/125 (25%)
Query: 90 KEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEET 149
+ L + +E+ E+A ++ + E + +K E
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 150 SELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELA 209
E + E ++ ++ E L + L+
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 210 KEEIR 214
E+I
Sbjct: 127 DEKIS 131
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 33.0 bits (75), Expect = 0.084
Identities = 22/180 (12%), Positives = 52/180 (28%)
Query: 41 AKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEE 100
+ + + +A EK + + A+ +T L + + + + +
Sbjct: 798 FATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQ 857
Query: 101 TRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSEL 160
RE EK + + + + + + + + + EE L
Sbjct: 858 RREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRL 917
Query: 161 AKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKEE 220
+ AKE ++T + + +E+ RE E E+
Sbjct: 918 IRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNED 977
Score = 27.6 bits (61), Expect = 3.7
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 2/175 (1%)
Query: 38 DKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALA 97
+K A+ +T L + + + +++ + E EK + + + +
Sbjct: 827 EKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQ 886
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEET 157
+ + + + + EE L + AKE ++T+ +
Sbjct: 887 EINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDK 946
Query: 158 SELAKEKPRELAKEETRELAKEKTRELAKEE--TRELAKEKTRELAKEKTRELAK 210
+ + +E+ RE E E+ R + RE A E EL +
Sbjct: 947 ASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNE 1001
Score = 26.8 bits (59), Expect = 6.5
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 18/149 (12%)
Query: 38 DKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALA 97
+ + + + EE L + AKE ++T+ + + +
Sbjct: 899 EHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQ 958
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEET 157
+E+ R E L KEE L ++ + + L E +E E
Sbjct: 959 REQQR-------------EAEALIKEE--NLNEDAAKRYIRT---SLKREYATENGTELN 1000
Query: 158 SELAKEKPRELAKEETRELAKEKTRELAK 186
L K P + ++ +K +
Sbjct: 1001 ETLPKLSPLNPQYKTKKQAVFQKIVSFIE 1029
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.9 bits (72), Expect = 0.19
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 106 KEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKP 165
+ L +EE E+ + + E + ++ +E K P
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEK 204
E R+ E ++ ++ E
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEA 105
Score = 31.5 bits (71), Expect = 0.22
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%)
Query: 37 GDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRAL 96
G +S L + +E+ E+A ++ + E + ++ +E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 97 AKE----ETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSEL 152
K +T E ++ + EE + ++ K E + L
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYK-----QFGPEAMA-VLDRCFYL 115
Query: 153 AKEETSELAKEKPRELAKEETRELAKEKTRELAK 186
A ++ + E+ E L K
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Score = 29.9 bits (67), Expect = 0.78
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 157 TSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAK------ 210
+S L +EE E+A + + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 211 --EEIRELAKE 219
E +R+
Sbjct: 70 TIENLRQAYLR 80
Score = 27.6 bits (61), Expect = 3.7
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 173 TRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKEE 220
+ L + +EE E+A + + E + ++I E
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRI 57
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 31.1 bits (70), Expect = 0.26
Identities = 17/139 (12%), Positives = 32/139 (23%), Gaps = 10/139 (7%)
Query: 50 KEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKT 109
EL KE + + A
Sbjct: 626 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 685
Query: 110 RELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELA 169
E L LTKE+ ++L K+ + + E L K +++
Sbjct: 686 PEELYGTYEYLLGMRIWSLTKERYQKLLKQ----------KQEKETELENLLKLSAKDIW 735
Query: 170 KEETRELAKEKTRELAKEE 188
+ + L ++
Sbjct: 736 NTDLKAFEVGYQEFLQRDA 754
Score = 26.9 bits (59), Expect = 6.0
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 8/125 (6%)
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEET 157
+EL KE + + A + + +
Sbjct: 626 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 685
Query: 158 SELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELA--KEKT-RELAKEEIR 214
E L L KE+ ++L K+ +EK EL + + +++ +++
Sbjct: 686 PEELYGTYEYLLGMRIWSLTKERYQKLLKQ-----KQEKETELENLLKLSAKDIWNTDLK 740
Query: 215 ELAKE 219
Sbjct: 741 AFEVG 745
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 31.0 bits (70), Expect = 0.31
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 99 EETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAK--------EETRELANEETS 150
++ RELA++ K LA+ +EL K + RE
Sbjct: 6 QKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGF 65
Query: 151 ELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAK 210
++ +E L + + ++ EK R++ RE+
Sbjct: 66 SEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDS 125
Query: 211 EEIREL 216
+ ++E+
Sbjct: 126 KPLQEI 131
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 0.80
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 50 KEETSELAKEKTSELAK-EETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEK 108
++ E + L K E+ E L+ L EK R L + ++
Sbjct: 1863 YQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQE 1922
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 150 SELAKEETSELAKEKPR---ELAK-EETRELAKEKTRELAKEETRELAKEKTRELAKEKT 205
+L + +L + + L K E+ E + L+ + L EK R L K
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 206 RELAKEEI 213
+E+
Sbjct: 1916 FSKTSQEL 1923
Score = 28.3 bits (63), Expect = 2.7
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 158 SELAKEKPRELAKEETR---ELAK-EKTRELAKEETRELAKEKTRELAKEKTRELAKEEI 213
+L K ++L + + L K ++ E + L+ + L EK R
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKER--WLNTT 1913
Query: 214 RELAKEETN 222
++ +K
Sbjct: 1914 KQFSKTSQE 1922
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 126 SELTKEKTRELAKEETRELAN-----EETSELAKEETSELAKEKPRELAKEETRELAKEK 180
+L K ++L + + + E+ E L+ + L E KE+
Sbjct: 1856 VKLVTAKYQDLQENQRF-VNVGLEKLNESVLKVNELNKTLSISLVKSLTFE------KER 1908
Query: 181 TRELAKEETRELAKEKTREL 200
K+ ++ + +
Sbjct: 1909 WLNTTKQFSKTSQELIGNCI 1928
Score = 27.1 bits (60), Expect = 6.0
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 54 SELAKEKTSELAKEETSELAKEKTSELAK-EETSELAKEKTRALAKEETRELAKEKTREL 112
+L K +L E + L K E+ E + L+ + L EK R
Sbjct: 1856 VKLVTAKYQDL-----QENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKER-- 1908
Query: 113 AKEEIRELAKE 123
++ +K
Sbjct: 1909 WLNTTKQFSKT 1919
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 29.7 bits (67), Expect = 0.94
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 180 KTRE-----LAKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
R+ +E + A ++ REL +EK L+ EE E+A++
Sbjct: 426 SGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470
Score = 27.0 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 97 AKEETRELAKEKTRELAKEEIRELAKE 123
A + REL +EK L+ EE E+A++
Sbjct: 444 AVKRARELIEEKNPALSDEEKAEVAEK 470
Score = 27.0 bits (60), Expect = 6.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 108 KTRE-----LAKEEIRELAKEETSELTKEKTRELAKEETRELANE 147
R+ +E+ + A + EL +EK L+ EE E+A +
Sbjct: 426 SGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 29.4 bits (67), Expect = 1.1
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 114 KEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEET 173
E I + ++ + EE ++ L + ++ + P ++
Sbjct: 665 SETINSIREDVFKATIDAYIPPQSLEEMWDIP-----GLQERLKNDFDLDLPIAEWLDKE 719
Query: 174 RELAKEKTRELAKEETRELAKEKTRELAKEKTRELAK 210
EL +E RE ++ E+ + K + E R K
Sbjct: 720 PELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEK 756
Score = 27.1 bits (61), Expect = 5.0
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 130 KEKTRELAKEETRELANEETSELAKEE---TSELAKEKPRELAKEETRELAKEKTRELAK 186
E + ++ + + + EE L + + + +K EL +
Sbjct: 665 SETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHE 724
Query: 187 EETRELAKEKTRELAKEKTRELAKEEIRELAK 218
E RE ++ E+ + K + E +R K
Sbjct: 725 ETLRERILAQSIEVYQRKEEVVGAEMMRHFEK 756
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.2 bits (65), Expect = 1.3
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 28 PETLQPEERGDKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSE 87
P+ L P ERG + + EL E+ +EL + K ++ KE+ + +E + + E +E
Sbjct: 85 PDPLSPGERG---IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAE 141
Query: 88 LAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANE 147
+ EK + + A ++ EE ++ + T+ L KE E ET +
Sbjct: 142 IEDEK-----QFDILNKAVTSYNKILTEEDLQMRRLATA-LQKE-IGERTHAETVMVKEY 194
Query: 148 ETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKE 187
A + E+ ++ +E A +E + + ++E
Sbjct: 195 RDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEE 234
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.8
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 104 LAKEKTRELAKEEIRELAKEETSELT-KEKTRELAKEETRELANEETSELAKEETSELAK 162
+A+ E IR+ +E+ L + ++ ++E RE A ++ E + ++ ++ K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 163 EKPRELAKEE 172
K ++
Sbjct: 134 NKINNRIADK 143
Score = 27.8 bits (61), Expect = 2.2
Identities = 12/82 (14%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 80 LAKEETSELAKEKTRALAKEETRELA-KEKTRELAKEEIRELAKEETSELTKEKTRELAK 138
+A+ + E R +E+ + L + ++ ++E RE AK++ E + ++ ++ K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 139 EETRELANEETSELAKEETSEL 160
+ ++ ++ +++
Sbjct: 134 NKINNRIADK--AFYQQPDADI 153
Score = 27.0 bits (59), Expect = 4.4
Identities = 11/77 (14%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 64 LAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKE 123
+A+ + E + +E+ L + + ++ +++ RE AK+++ E +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQE-------LDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 124 ETSELTKEKTRELAKEE 140
++ ++ K K ++
Sbjct: 127 QSEQVEKNKINNRIADK 143
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 3/118 (2%)
Query: 108 KTRELAKEEIRELAKEETSELTKEKTRELAKE---ETRELANEETSELAKEETSELAKEK 164
K R+ AK E+ +L L+ + + A + E E+ EL S
Sbjct: 167 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG 226
Query: 165 PRELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKEETN 222
+ K + + A + ++ + E + ++ + +E +
Sbjct: 227 LHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGD 284
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 28.0 bits (62), Expect = 2.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 186 KEETRELAKEKTRELAKEKTRELAKEEIRELAK 218
+E+ ++ AK +R +++K R+ I+EL
Sbjct: 4 EEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGS 36
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 28.1 bits (63), Expect = 2.6
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 92 KTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSE 151
A + L + T + + ++EE + +E T + A +
Sbjct: 255 AALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH-T 313
Query: 152 LAKEETSELAKEKPRELAKEETRELA 177
+A E L + ++ LA
Sbjct: 314 IAIE---ALDAVDMPDRVRDRFTALA 336
Score = 27.3 bits (61), Expect = 3.9
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 132 KTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRE 191
+ L T++ + + ++E+ A +E T + A+ +
Sbjct: 255 AALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH-T 313
Query: 192 LAKEKTRELAKEKTRELAKEEIRELA 217
+A E L + ++ LA
Sbjct: 314 IAIE---ALDAVDMPDRVRDRFTALA 336
Score = 26.5 bits (59), Expect = 7.8
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 87 ELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELAN 146
+ L + T + ++EE + + + RE +E R
Sbjct: 258 AAGGAASERLGEILTADAKASDFANFSEEEFAAR----AALIEEAGGREWTADEARRQHT 313
Query: 147 EETSELAKEETSELAKEKPRELA 169
L + + +++ LA
Sbjct: 314 IAIEALDAVDMPDRVRDRFTALA 336
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 27.9 bits (62), Expect = 2.9
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 135 ELAKEETRELANEETSELAK-----EETSELAKEKPRELAKEETRELAKEKTRELAKEET 189
+L KE R A + E + +E + + + E L + +
Sbjct: 4 DLRKE--RASATFNPELITHILDGSPENTRRRREIENLILNDP--DFQHEDYNFLTRSQR 59
Query: 190 RELAKEKTRELAKEKTREL 208
E+A +K+ + K K RE
Sbjct: 60 YEVAVKKSATMVK-KMREY 77
Score = 26.8 bits (59), Expect = 7.1
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 67 EETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAK 114
E + +E + + + + E L + + E+A +K+ + K
Sbjct: 27 PENTRRRREIENLILNDP--DFQHEDYNFLTRSQRYEVAVKKSATMVK 72
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 27.2 bits (61), Expect = 4.4
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 71 ELAKEKTSELAKEETSELAKEKTRALAK-EETRELAKEKTRELAKEEIRELAKEETSELT 129
EL++E+ + ET + +E + + + +E+ K+ + + E+ E+AKEE
Sbjct: 47 ELSREE-ANS--RETVAVYREYKQVVQNIADAQEMIKDASGD---PELEEMAKEELKNS- 99
Query: 130 KEKTRELAKE 139
K E ++
Sbjct: 100 KVAKEEYEEK 109
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 27.1 bits (61), Expect = 5.6
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 100 ETRELAKEKTRELAKEEIRELAKE--ETSELTKEKTRELAK 138
+ + K ++ A+E+I L E S++ K + L +
Sbjct: 31 DEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQ 71
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 26.8 bits (60), Expect = 5.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 111 ELAKEEIRELAKE 123
EL K ++R++A++
Sbjct: 184 ELEKPQVRKIAED 196
Score = 26.8 bits (60), Expect = 5.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 207 ELAKEEIRELAKE 219
EL K ++R++A++
Sbjct: 184 ELEKPQVRKIAED 196
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 26.9 bits (60), Expect = 6.0
Identities = 14/94 (14%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 71 ELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTK 130
E AK+K EL + + ++ + L +E+ ++ +E + ++ + +E+++
Sbjct: 842 ECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSE 901
Query: 131 EKTRELAKEETRELANEETSELAKEETSELAKEK 164
E + ++L E ++ +++ K
Sbjct: 902 EN----ITIKLKQLKAEVIAKNNSFVNEIISRIK 931
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat
methyltransferase; alpha-beta, beta barrel, structural
genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus
pneumoniae}
Length = 376
Score = 26.7 bits (60), Expect = 6.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 111 ELAKEEIRELAKE 123
L K E+R LA+E
Sbjct: 176 HLEKPEVRRLAEE 188
Score = 26.7 bits (60), Expect = 6.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 207 ELAKEEIRELAKE 219
L K E+R LA+E
Sbjct: 176 HLEKPEVRRLAEE 188
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 26.7 bits (60), Expect = 7.2
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 5/93 (5%)
Query: 54 SELAKEKTSELAKEETSELAKEKTSELAKEETSE--LAKEKT-RALAKEETRELAKEKTR 110
E K + + L + + LA+ S+ +K R + +
Sbjct: 224 KEAGKPRWDWQPEPVNEAL-NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL 282
Query: 111 ELAKEEIRELAKEETSELTKEKTREL-AKEETR 142
+ E + K R E R
Sbjct: 283 AEDETLDENELGEILHAIEKNVVRSRVLAGEPR 315
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 26.8 bits (60), Expect = 7.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 46 SELAKEETSELAKEKTSE----LAKEETSELAKEKTSELAKEETSELAKEKTRALAKEET 101
+ L+KEE L +E A++ LA+E T + EE A + AL +
Sbjct: 271 TFLSKEEIEALEQELREAPEKRAAQKT---LAEEVTKLVHGEEALRQAIRISEALFSGDI 327
Query: 102 RELAKEKTRELAKE 115
L + + K+
Sbjct: 328 ANLTAAEIEQGFKD 341
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 26.4 bits (58), Expect = 7.8
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 16 CMSSASPNSCGRPETLQPEERGDKSAKEETSELAKE-------ETSELAKEKTSELAKEE 68
C S P LQ E+ A++ + E +E
Sbjct: 58 CTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQAHEERLQEV 117
Query: 69 TSELAKEKTSELAKEETSELAKEKTRALAK 98
+E+A T L + E AK+ R +
Sbjct: 118 EAEVASTGTYHLRESELVFGAKQAWRNAPR 147
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 7.9
Identities = 23/142 (16%), Positives = 59/142 (41%), Gaps = 2/142 (1%)
Query: 82 KEETSELAKEKTRALA-KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEE 140
+E+T E R +E + ++ + +E E + E ++K E+ +
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 141 TRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTREL 200
+ + +E E+ ++ ++L ++E ++L ++K + L E ++ EL
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKL-EDKKKSLDDEVNAFKQRKTAAEL 405
Query: 201 AKEKTRELAKEEIRELAKEETN 222
+ + + + + KE+ N
Sbjct: 406 LQSQGSQAGGSQTLKRDKEKKN 427
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 26.4 bits (59), Expect = 8.0
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 46 SELAKEETSELAKEKTSE----LAKEETSELAKEKTSELAKEETSELAKEKTRALAKEET 101
+ L KEE L + K A++ LA+E T + E+ A ++AL +
Sbjct: 272 TFLGKEEIDRLEQSKNEAPHLREAQKT---LAEEVTKFIHGEDALNDAIRISQALFSGDL 328
Query: 102 RELAKEKTRELAKE 115
+ L+ ++ ++ K+
Sbjct: 329 KSLSAKELKDGFKD 342
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 26.5 bits (58), Expect = 8.4
Identities = 5/49 (10%), Positives = 17/49 (34%)
Query: 103 ELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSE 151
++A K E+ + ++ L ++ K + + + +
Sbjct: 269 KIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK 317
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 26.1 bits (58), Expect = 9.9
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 108 KTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRE 167
K R+ AK E+ +L L+ + + A + + + + E S + +
Sbjct: 163 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG 222
Query: 168 LAKEETRELAKEKTRELAKE 187
L K +L +E KE
Sbjct: 223 LHKFVKGDLLQEAIDFAQKE 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.291 0.111 0.263
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,089,597
Number of extensions: 195862
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 392
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 55 (25.4 bits)