RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3451
(223 letters)
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 33.8 bits (76), Expect = 0.013
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 111 ELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKE------ETSELAKEK 164
+L +EEI L K R LA+ T A + + A +
Sbjct: 267 DLEEEEIEALLKAGP----VPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR 322
Query: 165 PRELAKEETRELAKEKTRELAK 186
+E EE R + E+AK
Sbjct: 323 DKEAGPEEVRRAE-ARYDEVAK 343
Score = 32.3 bits (72), Expect = 0.036
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 150 SELAKEETSELAKEKPRE----LAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKT 205
++L +EE L K P LA+ T A + E A +
Sbjct: 266 TDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA--WEAFGRD 323
Query: 206 RELAKEEIRELAKE 219
+E EE+R
Sbjct: 324 KEAGPEEVRRAEAR 337
Score = 29.2 bits (64), Expect = 0.39
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 78 SELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKE------ETSELTKE 131
++L +EE L K R LA+ T A +I +
Sbjct: 266 TDLEEEEIEALLKAGPV----PAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFG 321
Query: 132 KTRELAKEETRELANEETSELAK 154
+ +E EE R E+AK
Sbjct: 322 RDKEAGPEEVRRAE-ARYDEVAK 343
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 32.5 bits (73), Expect = 0.042
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 2/135 (1%)
Query: 38 DKSAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTSELAKEETSELAKEKTRALA 97
+K EL KE + + A + +
Sbjct: 624 NKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTEN 683
Query: 98 KEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEET 157
E L I L KE +L K+ ++ + E L ++ +
Sbjct: 684 VINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQ--KQEKETELENLLKLSAKDIWNTDL 741
Query: 158 SELAKEKPRELAKEE 172
L ++
Sbjct: 742 KAFEVGYQEFLQRDA 756
Score = 29.0 bits (64), Expect = 0.47
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 6/120 (5%)
Query: 106 KEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKP 165
+EL KE + + A + +
Sbjct: 628 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 687
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKT------RELAKEKTRELAKEEIRELAKE 219
E L + L KE ++L K+K L K +++ +++
Sbjct: 688 PEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 747
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 30.2 bits (67), Expect = 0.15
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 86 SELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELA 145
L T + +E ELA K + + ++T+++ + + EE ++
Sbjct: 138 GVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQIL 197
Query: 146 NE 147
+
Sbjct: 198 AK 199
Score = 26.3 bits (57), Expect = 2.7
Identities = 8/60 (13%), Positives = 25/60 (41%)
Query: 120 LAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKE 179
L T E+ ++ ELA +++ + ++ +++ + + EE ++ +
Sbjct: 140 LEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 29.7 bits (65), Expect = 0.27
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 167 ELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRE 215
E+ RE + E+ + + K+K EL ++ A+E R
Sbjct: 412 EIDTNVKREELAKLINEVIAGDKGKKMKQKAMEL-----KKKAEENTRP 455
Score = 28.2 bits (61), Expect = 0.94
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 103 ELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKE 139
E+ RE + I E+ + + K+K EL K+
Sbjct: 412 EIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKK 448
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 29.3 bits (64), Expect = 0.35
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 170 KEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAKE 219
T + ET A + + A+ + +++E
Sbjct: 352 PIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSRE 401
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 29.0 bits (64), Expect = 0.36
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 96 LAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKE 155
L+ E+ L K A + +T++ + EL ++ +E
Sbjct: 148 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF----WKVKEE 203
Query: 156 ETSE 159
E S
Sbjct: 204 EGSF 207
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 28.3 bits (63), Expect = 0.65
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 162 KEKPRELAKEETRELAKEKTRELAKEETRELAK---EKTRELAKE 203
K+ E+ + E ++ + AK + + E+T + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 28.3 bits (63), Expect = 0.71
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 92 KTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTK---EKTRELAKE 139
+ K+ + E+ + + + + + AK + + E+T + AK
Sbjct: 115 ASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 27.5 bits (61), Expect = 1.3
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 114 KEEIRELAKEETSELTKEKTRELAKEETRELAN---EETSELAKE 155
K+ E+ + E ++ + AK + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 27.1 bits (60), Expect = 1.5
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 164 KPRELAKEETRELAKEKTRELAKEETRELAKEKTRELAK---EKTRELAKE 211
+ K+ + E+ + + + + AK + + + E+T + AK
Sbjct: 115 ASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 27.1 bits (60), Expect = 1.6
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 194 KEKTRELAKEKTRELAKEEIRELAKEE 220
K+ + E+ + + + + + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRR 147
Score = 27.1 bits (60), Expect = 1.9
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 74 KEKTSELAKEETSELAKEKTRALAKEETRELAK---EKTRELAKE 115
K+ + E+ + E ++ AK + + E+T + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 26.4 bits (58), Expect = 3.3
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 130 KEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKE 179
K+ + E+ + E ++ + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQL-----FMEETLKAAKR 165
Score = 26.0 bits (57), Expect = 3.7
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 186 KEETRELAKEKTRELAKEKTRELAKEEIRELAK---EET 221
K+ + E+ + + ++ + AK + + EET
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEET 159
Score = 25.6 bits (56), Expect = 5.1
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 178 KEKTRELAKEETRELAKEKTRELAKEKTRELAK---EEIRELAKE 219
K+ + E+ + E ++ + AK + + + EE + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 27.8 bits (61), Expect = 0.82
Identities = 6/63 (9%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 93 TRALAKEETRELAKEKTRELAKEEIRELAKEETSE--------LTKEKTRELAKEETREL 144
+ + + +L E+ +LA+ I + + + ++ ++ + +L
Sbjct: 136 YGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADL 195
Query: 145 ANE 147
+
Sbjct: 196 HEK 198
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 28.2 bits (61), Expect = 0.90
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 109 TRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETSELAKEKPREL 168
RE ++ L + E + + K +EL + R L ++ TS A + K +EL
Sbjct: 410 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKEL 469
Query: 169 AK 170
+
Sbjct: 470 EQ 471
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 28.1 bits (61), Expect = 0.96
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 170 KEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKEEIRELAK 218
+ + + ++E +A E+ R + E E+ +A+
Sbjct: 302 PQLSVDAVANTLAGWSRETLLTMA-ERARAASIPDATERVANEVSRVAR 349
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 27.1 bits (59), Expect = 1.3
Identities = 22/95 (23%), Positives = 33/95 (34%)
Query: 92 KTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSE 151
+ L EE +LA++ + + A EL +E R R E
Sbjct: 13 QVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKE 72
Query: 152 LAKEETSELAKEKPRELAKEETRELAKEKTRELAK 186
+T E K + L KE R L + E A+
Sbjct: 73 KPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAAR 107
Score = 25.5 bits (55), Expect = 4.2
Identities = 22/91 (24%), Positives = 33/91 (36%)
Query: 128 LTKEKTRELAKEETRELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKE 187
LT E+ +LA++ + + A EL +E R R +E
Sbjct: 17 LTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDP 76
Query: 188 ETRELAKEKTRELAKEKTRELAKEEIRELAK 218
+T E K + L KE R L E A+
Sbjct: 77 KTVEEVDGKLKSLPKELKRYLHIAREGEAAR 107
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.4 bits (59), Expect = 1.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 110 RELAKEEIRELAKE 123
+EL K+E+R++ E
Sbjct: 170 KELFKDEVRKIGLE 183
Score = 27.4 bits (59), Expect = 1.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 206 RELAKEEIRELAKE 219
+EL K+E+R++ E
Sbjct: 170 KELFKDEVRKIGLE 183
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 27.0 bits (59), Expect = 1.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 111 ELAKEEIRELAKEETSEL-TKEKTRELAKEETRELANEETSELAKEETSEL 160
L KEEI L + + +E + LA+E T+ + E+ A + L
Sbjct: 272 FLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQAL 322
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 26.5 bits (58), Expect = 2.2
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 78 SELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELA 137
+ AK E +L L+ E + A + ++ + + E S + +T L
Sbjct: 165 RQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLH 224
Query: 138 KEETRELANEETSELAKEETS 158
K +L +E + A++E +
Sbjct: 225 KFVKGDLL-QEAIDFAQKEIN 244
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 25.9 bits (57), Expect = 4.2
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 14 NICMSSASPNSCGRPETLQPEERGDKSAKEETSELAKEET----SELAKEKTSELAK--- 66
C S P LQ E+ A++ S + + + +
Sbjct: 28 GPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQAHEERLQ 87
Query: 67 EETSELAKEKTSELAKEE 84
E +E+A T L + E
Sbjct: 88 EVEAEVASTGTYHLRESE 105
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.8 bits (56), Expect = 4.5
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 78 SELAKEETSELAKEKTRALAKEETRELAKEKTRELA-------KEEIRELAKEETSELTK 130
E+ + LA + L K + E+A K IR L ++E +L K
Sbjct: 181 GEMTLKSALALAI---KVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIK 237
Query: 131 EKTRELAKEETRE 143
+ E AK E +
Sbjct: 238 KHEEEEAKAEREK 250
Score = 25.4 bits (55), Expect = 5.6
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 96 LAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKE 155
+ + LA + + K E + LT+E K R L +E +L K+
Sbjct: 183 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG----KTVIRVLKQKEVEQLIKK 238
Query: 156 ETSELAKEKPRE 167
E AK + +
Sbjct: 239 HEEEEAKAEREK 250
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 25.6 bits (56), Expect = 4.6
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 64 LAKEETSELAKEKTSELAKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKE 123
+++E L S L K + K++T + + + +IR+ +
Sbjct: 110 ISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRV-----AQIRQEIEN 164
Query: 124 ETSELTKEKTRE-LAK 138
S+ +EK +E LAK
Sbjct: 165 SDSDYDREKLQERLAK 180
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 25.5 bits (55), Expect = 4.7
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 96 LAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAK 154
L++ E R+L + R L + R + +T+ +T++ T E ++A
Sbjct: 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLST-----ETNWDIAH 213
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.0 bits (57), Expect = 5.0
Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 27/146 (18%)
Query: 100 ETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAKEETS- 158
R + E +KE+++++ + + T E EETRE N + + +
Sbjct: 101 NKRTGDAFQISEESKEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNG 160
Query: 159 --------------------ELAKEKPRELAKEETRELAKEKTRELAKEETRELAK---- 194
AKE+ + + + KEK
Sbjct: 161 VGHVSVDYGKVLRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNR 220
Query: 195 --EKTRELAKEKTRELAKEEIRELAK 218
+K +E+A + K E+ E+AK
Sbjct: 221 YAKKAKEIADNTSDAKRKAELNEIAK 246
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 25.1 bits (54), Expect = 5.7
Identities = 11/60 (18%), Positives = 20/60 (33%)
Query: 81 AKEETSELAKEKTRALAKEETRELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEE 140
S L + EE +L K +EL K + + K+ R++ +
Sbjct: 137 GFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 25.5 bits (56), Expect = 7.1
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 14 NICMSSASPNSCGRPETLQPEERGDKSAKEETSELAKE----ETSELAKEKTSELAK--- 66
C S + S P++L R + EE A E + K E
Sbjct: 26 FTCKSKSCLGSIMNPKSLTRGPRDKPTPLEELLPHAIEFINQYYGSFKEAKIEEHLARLE 85
Query: 67 EETSELAKEKTSELAKEE 84
T E+ T +L +E
Sbjct: 86 AVTKEIETTGTYQLTLDE 103
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 25.1 bits (54), Expect = 8.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 195 EKTRELAKEKTRELAKEEIRELAK 218
+ R+ A EK R++A E + A+
Sbjct: 6 SRARQKAAEKVRDVAAELLDIYAQ 29
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 936
Score = 25.1 bits (54), Expect = 9.1
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 102 RELAKEKTRELAKEEIRELAKEETSELTKEKTRELAKEETRELANEETSELAK 154
++L RE +E E++ + + K EL + LA + +A
Sbjct: 16 QDLHGPSLREFV-QECYEVSADYEGKGDTTKLGELGA-KLTGLAPADAILVAS 66
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 25.0 bits (53), Expect = 9.5
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 142 RELANEETSELAKEETSELAKEKPRELAKEETRELAKEKTRELAKEETRELAKEKTRELA 201
R L + LA+ + LA+ R+ A + + E + R + ++
Sbjct: 355 RNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAE--QRHLRAVLGDE----- 407
Query: 202 KEKTRELAKEEIREL 216
+ + EL+ EE+ L
Sbjct: 408 PQVSAELSGEELDRL 422
>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli
[TaxId: 562]}
Length = 307
Score = 24.9 bits (54), Expect = 9.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 166 RELAKEETRELAKEKTRELAKEETRELAKEKTRELAKEKTRELAKE 211
+ +E E A K+R++A +TR+ + E+ + + KE
Sbjct: 238 SQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEIKMAEWMQTLKE 283
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.291 0.111 0.263
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,219
Number of extensions: 31937
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 111
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 51 (23.5 bits)