BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3452
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++P CG+CK PEYVKAAE L + + + LA IDCTE+ LC E++I G+P+
Sbjct: 38 FFAPWCGHCKNMAPEYVKAAETLVEKN-ITLAQIDCTENQDLCMEHNIPGFPSL 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+L+Y+P CG+CK+ P Y + A+ + V +A +D TE+ + I+GYPT
Sbjct: 381 VLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTI 435
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ FY+P CG+CKK PEY KAA E+ K + + LA +D TE L K +D+ GYPT
Sbjct: 29 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLK 86
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
FY+P CG+CK+ PEY K A LKDN +A+A ID T L ++D+ GYPT L
Sbjct: 41 FYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL 98
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ FY+P CG+CK PEY KAA LK + ++ LA +D TE L ++Y ++GYPT
Sbjct: 29 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI 85
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAA-EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ FY+P CG+CKK PEY KAA E+ K + + LA +D T L K +D+ GYPT
Sbjct: 152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLK 209
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
FY+P CG+CK+ PEY K A +LKD + + +A ID T L +D+ GYPT L
Sbjct: 39 FYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKIL 96
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDN--HKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ + FY+P CG+CK +PE+ AA +K+ KV LAA+D T + L Y I+G+PT
Sbjct: 28 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ + FY+P CG+C++ PE+ KAA LKD KV A++ +H L +Y ++G+PT
Sbjct: 37 LWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKV--GAVNADKHQSLGGQYGVQGFPTI 93
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ F++P CG+CK+ PEY AA LK V LA +DCT + C +Y + GYPT
Sbjct: 26 VEFFAPWCGHCKRLAPEYEAAATRLK--GIVPLAKVDCTANTNTCNKYGVSGYPTL 79
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ F++P CG+ K+ PEY AA LK V LA +DCT + C +Y + GYPT
Sbjct: 26 VEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKVDCTANTNTCNKYGVSGYPTL 79
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
I FY+P CG+CK +P+Y + E L + + +A +D T + + Y+++G+PT +
Sbjct: 375 IEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTIY 430
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG 56
+A E++KAA L+DN++ A ++ L EYD G
Sbjct: 142 EAHSEFLKAASNLRDNYRFAHTNVES-----LVNEYDDNG 176
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ FY+P CG+CKK + KAA+ L +VA D ++ LC +YD+ G+PT
Sbjct: 40 VEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTL 95
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK P + + + + V +A +DCT +C +Y ++GYPT
Sbjct: 26 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of
Human Erp46
Length = 110
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK P + + + + V +A +DCT +C +Y ++GYPT
Sbjct: 21 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 77
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK P + + + + V +A +DCT +C +Y ++GYPT
Sbjct: 28 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 84
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
I FY+P CG+CK +P+Y + E L + + +A +D T + + Y+++G+PT +
Sbjct: 50 IEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTIY 105
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVAL-----AAIDCTEHGPLCKEYDIKGYP 58
+LFY+ GCG C++ + K A LK H K AL AA++C LC++YDI P
Sbjct: 47 VLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVP 106
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
I FY+P CG+CK+ +P Y + K + +A +D T + +Y ++G+PT +
Sbjct: 30 IEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIY 86
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
+ I FY+P C C+ +PE+ AE +D +V +A +D TE L + I PT +H
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTIYH 83
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
+++ F++ CG+C P + AE +K + LAA+DC E + +C++++I G+PT
Sbjct: 33 WAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92
Query: 60 FH 61
Sbjct: 93 VR 94
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 58 PTFHHLALTIMIIR--LALAAIDCTE--HGPLCKEYDIKGYPTFQYFHYFN 104
PT+ LA + R L LAA+DC E + +C++++I G+PT ++F F
Sbjct: 50 PTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFT 100
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 58 PTFHHLALTIMIIR--LALAAIDCTE--HGPLCKEYDIKGYPTFQYFHYFNK 105
PT+ LA + R L LA +DC E + +C+E++I G+PT ++F F K
Sbjct: 50 PTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTK 101
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTE--HGPLCKEYDIKGYPT 59
+++ F++ CG+ P + + A +KD + LA +DC E + +C+E++I G+PT
Sbjct: 33 WAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++P CG C++ P++ AA L +V LA ID H + + I+G P F
Sbjct: 71 FWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF 122
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ + FY+P CG C+ PE+ A ++K KV +DC + C++ IK YP+
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK 80
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHY 102
P F LA I ++ +DC + C++ IK YP+ + + Y
Sbjct: 41 PEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQY 84
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43
FY+P CG+CK+ P + K E KD+ + +A +D T
Sbjct: 274 FYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVAL-----AAIDCTEHGPLCKEYDIKGYP 58
+LFY+ GCG ++ + K A LK H K AL AA++C LC++YDI P
Sbjct: 47 VLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVP 106
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDN----HKVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+ C + + P + +A++V+K+ ++V A +DC +H + + Y I YPT
Sbjct: 29 FYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTL 86
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
++ A +DC +H + + Y I YPT + F
Sbjct: 60 QVVFARVDCDQHSDIAQRYRISKYPTLKLF 89
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ + FYSPGC +C P + + A+ + + + + A++C + LC+ + YP
Sbjct: 116 LWFVNFYSPGCSHCHDLAPTWREFAKEV--DGLLRIGAVNCGDDRMLCRMKGVNSYP--- 170
Query: 62 HLALTIMIIRLALAAI 77
++ I R +AA+
Sbjct: 171 ----SLFIFRSGMAAV 182
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43
+ FY+P CG+CK+ P + K E KD+ + +A +D T
Sbjct: 30 VEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P + PE KA+ +L KV +DCT H LC Y+I+ YPT
Sbjct: 462 FFAPWSPPSRALLPELRKASTLLYGQLKVG--TLDCTIHEGLCNMYNIQAYPT 512
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 64 ALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116
A T++ +L + +DCT H LC Y+I+ YPT FN+ S Y ++
Sbjct: 480 ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV---VFNQSSIHEYEGHHS 529
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
FY+P G + PE+ A ++K KV +DC + C++ IK YP+
Sbjct: 682 FYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPS 732
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 7 FYSPGCGYCKKAKP---EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
FYSPG + P E+ K + L + + A++C + LC+ + YP
Sbjct: 140 FYSPGSSHSHDLAPTWREFAKEVDGL-----LRIGAVNCGDDRMLCRMKGVNSYP----- 189
Query: 64 ALTIMIIRLALAAI 77
++ I R +AA+
Sbjct: 190 --SLFIFRSGMAAV 201
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
FYSP + PE+ + A L + + ++DC ++ C + +++ YP
Sbjct: 570 FYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYP 619
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHY 102
P F LA I ++ +DC + C++ IK YP+ + + Y
Sbjct: 695 PEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQY 738
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115
P + +A T+ + + + ++DC ++ C + +++ YP ++ Y K S + ++ Y
Sbjct: 583 PEWKRMARTLTGL-INVGSVDCGQYHSFCTQENVQRYPEIRF--YPQKSSKAYQYHSY 637
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
F++ CG CK P+ V+ + DN V + +D E + EY+I PTF L
Sbjct: 27 FFATWCGPCKMISPKLVELSTQFADN--VVVLKVDVDECEDIAMEYNISSMPTFVFL 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
F++ CG CK P+ V+ + DN V + +D E + EY+I PTF L
Sbjct: 32 FFATWCGPCKMISPKLVELSTQFADN--VVVLKVDVDECEDIAMEYNISSMPTFVFL 86
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++ CG CK P K V K + KV +A +D +H L EY++ PT
Sbjct: 38 FHAQWCGPCKILGPRLEKM--VAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPT 88
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHL 63
++ CG CK P+Y K AE D V +DC E+ L KE I+ PTF L
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFKIL 98
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHL 63
++ CG CK P+Y K AE D V +DC E+ L KE I+ PTF L
Sbjct: 32 MFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFKIL 86
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I F++ CG CK P + K ++ + KV +D E + +E I+ PTF
Sbjct: 38 IDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF 92
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF---- 60
+ FYSP C YCK +P + + A+ + I+ + ++Y ++G PTF
Sbjct: 29 VXFYSPACPYCKAXEPYFEEYAK--EYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFC 86
Query: 61 HHLALTIMIIR-----LALAAIDCTEHGPLCKE------YDIKGY 94
H + + + L A D +HG C DI GY
Sbjct: 87 HGRPVWEQVGQIYPSILKNAVRDXLQHGEECIRKSTPVGQDITGY 131
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH---KVALAAIDCTEHGPLCKEYDIKGYPTFH 61
I FY+P CG+CK P+Y + + + +V +A +D T + +I+G+PT
Sbjct: 30 IEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---VPDEIQGFPTIK 86
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHL 63
++ CG K P+Y K AE D V +DC E+ L KE I+ PTF L
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFKIL 85
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+ CG CK +P K + D V D E + KE ++ PTF
Sbjct: 35 IDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTF 87
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
F + CG CK+ P Y++ +E + + ID E ++IK PTF L
Sbjct: 53 FSARWCGPCKQIAPYYIELSE---NYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
F++P CG CK P + + + D K+ + ID E+ +Y + PT L
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
+F + CGYC A V A + N + ID +E+ L +++ + G P
Sbjct: 142 VFVTTSCGYCPSAA---VXAWDFALANDYITSKVIDASENQDLAEQFQVVGVP 191
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
+F + CGYC A V A + N + ID +E+ L +++ + G P
Sbjct: 142 VFVTTSCGYCPSAA---VMAWDFALANDYITSKVIDASENQDLAEQFQVVGVP 191
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG CK+ P Y E K K+ +D E + ++ +I PTF
Sbjct: 33 FFAEWCGPCKRIAPFY---EECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFK 84
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++P CG C+ P E L +H ++ + ++ EH L Y ++ PT
Sbjct: 57 FFAPWCGPCRLVSPIL----EELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTL 108
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY 111
A ID ++ + + + G+PT +Y+ +KQ P Y
Sbjct: 74 ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEY 110
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+ CG CK P+ + ++ + D V +D E + ++ I PTF
Sbjct: 25 IDFYATWCGPCKMIAPKLEELSQSMSD---VVFLKVDVDECEDIAQDNQIACMPTF 77
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P CG CK P + A+ + + K+A+ ++ E + +Y+I+ PT
Sbjct: 25 FWAPWCGPCKLIAPVIDELAK--EYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P CG CK P + A+ + + K+A+ ++ E + +Y+I+ PT
Sbjct: 24 FWAPWCGPCKLIAPVIDELAK--EYSGKIAVYKLNTDEAPGIATQYNIRSIPT 74
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++P CG C+ P + A KD K+ ++ E + EY I+ PT
Sbjct: 26 FWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTI 77
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106
+ L ID H L +++IK PTF+++ N +
Sbjct: 71 VTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNE 105
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG+CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGHCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 58 PTFHHLALT-IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105
P FH L+ +I L + DC + + E ++K PTFQ+F K
Sbjct: 40 PFFHSLSEKYSNVIFLEVDVDDCQD---VASESEVKSMPTFQFFKKGQK 85
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 58 PTFHHLALT-IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105
P FH L+ +I L + DC + C ++K PTFQ+F K
Sbjct: 51 PFFHSLSEKYSNVIFLEVDVDDCQDVASEC---EVKSMPTFQFFKKGQK 96
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + AE + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIAEEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 58 PTFHHLALT-IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105
P FH L+ +I L + DC + C ++K PTFQ+F K
Sbjct: 40 PFFHSLSEKYSNVIFLEVDVDDCQDVASEC---EVKSMPTFQFFKKGQK 85
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + + L + + +D + ++Y+I PTF
Sbjct: 40 FFATWCGPCKTIAPLFKE----LSEKYDAIFVKVDVDKLEETARKYNISAMPTF 89
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG 56
+A E++KAA L+DN++ A ++ L EYD G
Sbjct: 38 EAHSEFLKAASNLRDNYRFAHTNVES-----LVNEYDDNG 72
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAI 40
++ + CG CK KP++ ++ E+ + +H + +
Sbjct: 44 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 79
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAI 40
++ + CG CK KP++ ++ E+ + +H + +
Sbjct: 51 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 86
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + + +E + +D + ++Y+I PTF
Sbjct: 31 FFATWCGPCKTIAPLFKELSE----KYDAIFVKVDVDKLEETARKYNISAMPTF 80
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 55 KGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY 111
+G T H +AL L+LA +D + +E D + Y+H++ Q P+PY
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDR--FVARAYWHWYFLQQPAPY 159
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 55 KGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY 111
+G T H +AL L+LA +D + +E D + Y+H++ Q P+PY
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDR--FVARAYWHWYFLQQPAPY 159
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAID 78
P + AA V +D H V L + +HG + ++Y ++ H+L ++ + +L AAI+
Sbjct: 602 PLKIVAATVGEDEHSVGLREVIDIKHGGI-EKYGVE----VHYLGTSVPVEKLVDAAIE 655
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG CK KP + +E + V +D + + E ++K PTF
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDAQDVASEAEVKATPTFQ 78
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILEEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 58 PTFHHLALT-IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105
P FH L+ +I L + DC + + E ++K PTFQ+F K
Sbjct: 40 PFFHSLSEKYSNVIFLEVDVDDCQD---VASEXEVKCMPTFQFFKKGQK 85
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 27 FWAEWCGPCKMIAPILDEIADDYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,124,635
Number of Sequences: 62578
Number of extensions: 146188
Number of successful extensions: 539
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 158
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)