Query psy3452
Match_columns 116
No_of_seqs 141 out of 1814
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:02:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02954 DIM1 Dim1 family; Dim1 99.9 7.1E-22 1.5E-26 118.2 7.1 63 2-66 16-78 (114)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.5E-21 3.3E-26 117.2 8.5 74 1-115 30-104 (113)
3 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 8.9E-21 1.9E-25 111.8 9.3 74 2-116 20-93 (101)
4 KOG0910|consensus 99.8 2.4E-21 5.3E-26 119.5 6.1 65 1-67 62-126 (150)
5 PHA02278 thioredoxin-like prot 99.8 2.9E-20 6.2E-25 110.0 6.5 63 2-66 16-82 (103)
6 KOG0907|consensus 99.8 2.8E-20 6.1E-25 110.4 6.1 63 1-66 22-84 (106)
7 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.6E-19 3.5E-24 107.6 9.0 81 2-116 20-100 (108)
8 cd02985 TRX_CDSP32 TRX family, 99.8 1.1E-19 2.4E-24 107.6 7.1 62 1-65 16-80 (103)
9 cd02963 TRX_DnaJ TRX domain, D 99.8 1.3E-19 2.9E-24 108.6 7.4 64 1-65 25-88 (111)
10 cd02999 PDI_a_ERp44_like PDIa 99.8 1.1E-19 2.4E-24 107.1 6.9 40 1-43 19-58 (100)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.4E-19 3E-24 107.1 7.0 74 2-115 21-94 (104)
12 cd02986 DLP Dim1 family, Dim1- 99.8 2.1E-19 4.5E-24 107.0 7.6 64 1-66 15-78 (114)
13 cd02994 PDI_a_TMX PDIa family, 99.8 3.9E-19 8.4E-24 104.7 8.2 43 3-46 19-61 (101)
14 TIGR02187 GlrX_arch Glutaredox 99.8 7.3E-19 1.6E-23 116.3 9.8 101 3-104 22-197 (215)
15 cd03002 PDI_a_MPD1_like PDI fa 99.8 8.3E-19 1.8E-23 104.4 8.6 78 2-116 20-100 (109)
16 KOG0191|consensus 99.8 6.6E-19 1.4E-23 125.2 9.5 111 2-115 49-239 (383)
17 cd02956 ybbN ybbN protein fami 99.8 4.5E-19 9.7E-24 103.4 7.2 62 2-65 14-75 (96)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.2E-18 2.5E-23 102.5 8.1 75 2-115 18-93 (102)
19 cd02993 PDI_a_APS_reductase PD 99.8 2.4E-18 5.1E-23 102.8 9.1 75 1-114 22-98 (109)
20 cd02948 TRX_NDPK TRX domain, T 99.8 1E-18 2.2E-23 103.3 7.2 63 2-66 19-81 (102)
21 KOG0190|consensus 99.8 4.7E-19 1E-23 127.5 6.7 76 2-115 44-119 (493)
22 COG3118 Thioredoxin domain-con 99.8 5.7E-19 1.2E-23 119.4 6.3 64 1-66 44-107 (304)
23 cd02992 PDI_a_QSOX PDIa family 99.8 3.6E-18 7.7E-23 102.9 9.0 78 1-114 20-101 (114)
24 cd03001 PDI_a_P5 PDIa family, 99.8 3.6E-18 7.8E-23 100.6 8.6 74 2-115 20-93 (103)
25 cd03000 PDI_a_TMX3 PDIa family 99.8 1.8E-18 3.9E-23 102.4 7.2 64 1-64 16-80 (104)
26 PLN00410 U5 snRNP protein, DIM 99.8 1.5E-18 3.2E-23 107.5 6.9 64 1-66 24-88 (142)
27 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 6.9E-18 1.5E-22 99.4 9.2 77 2-116 20-96 (104)
28 KOG4277|consensus 99.8 3.7E-19 7.9E-24 120.8 3.2 102 2-103 45-163 (468)
29 cd02962 TMX2 TMX2 family; comp 99.8 3.2E-18 7E-23 107.5 7.2 64 2-66 49-118 (152)
30 PF00085 Thioredoxin: Thioredo 99.8 4.3E-18 9.3E-23 100.0 7.0 63 2-66 19-81 (103)
31 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.5E-17 3.3E-22 98.0 9.2 78 1-116 19-97 (105)
32 KOG0190|consensus 99.8 4E-18 8.7E-23 122.7 7.9 76 2-116 386-461 (493)
33 cd02989 Phd_like_TxnDC9 Phosdu 99.7 4.5E-18 9.7E-23 102.3 6.2 62 2-66 24-85 (113)
34 TIGR01126 pdi_dom protein disu 99.7 1.6E-17 3.5E-22 97.4 8.4 76 1-115 14-89 (102)
35 cd02957 Phd_like Phosducin (Ph 99.7 4.5E-18 9.7E-23 102.2 6.1 61 2-66 26-86 (113)
36 PRK09381 trxA thioredoxin; Pro 99.7 1E-17 2.2E-22 99.9 7.4 63 2-66 23-85 (109)
37 cd02965 HyaE HyaE family; HyaE 99.7 8.1E-18 1.7E-22 100.2 5.8 63 2-66 29-93 (111)
38 cd02984 TRX_PICOT TRX domain, 99.7 1.6E-17 3.6E-22 96.9 7.0 64 1-66 15-78 (97)
39 PTZ00443 Thioredoxin domain-co 99.7 8.7E-18 1.9E-22 111.5 6.4 63 2-66 54-116 (224)
40 cd03065 PDI_b_Calsequestrin_N 99.7 7.2E-18 1.6E-22 102.1 5.4 62 2-65 29-96 (120)
41 cd02953 DsbDgamma DsbD gamma f 99.7 5E-17 1.1E-21 96.1 8.3 78 1-115 12-94 (104)
42 PRK10996 thioredoxin 2; Provis 99.7 3E-17 6.5E-22 102.0 7.3 63 2-66 54-116 (139)
43 cd02997 PDI_a_PDIR PDIa family 99.7 3E-17 6.5E-22 96.7 7.0 76 2-114 19-94 (104)
44 cd03008 TryX_like_RdCVF Trypar 99.7 2.6E-17 5.6E-22 102.7 6.9 90 1-106 26-125 (146)
45 cd02967 mauD Methylamine utili 99.7 2.5E-17 5.4E-22 98.7 6.4 83 1-105 22-107 (114)
46 KOG0908|consensus 99.7 1.6E-17 3.5E-22 109.8 5.2 65 1-68 22-86 (288)
47 cd02961 PDI_a_family Protein D 99.7 2.3E-16 4.9E-21 91.8 8.9 76 2-115 17-92 (101)
48 cd02949 TRX_NTR TRX domain, no 99.7 1.2E-16 2.7E-21 93.4 7.2 63 2-66 15-77 (97)
49 PF13905 Thioredoxin_8: Thiore 99.7 8.9E-17 1.9E-21 93.5 6.5 92 1-105 2-94 (95)
50 cd02950 TxlA TRX-like protein 99.7 1.4E-16 3E-21 99.4 7.5 62 1-64 21-84 (142)
51 PTZ00051 thioredoxin; Provisio 99.7 1.1E-16 2.3E-21 93.6 6.6 62 2-66 20-81 (98)
52 cd02987 Phd_like_Phd Phosducin 99.7 1E-16 2.2E-21 103.0 7.0 61 2-66 85-145 (175)
53 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.8E-16 4E-21 95.2 7.6 77 2-116 20-104 (116)
54 TIGR01068 thioredoxin thioredo 99.7 2E-16 4.3E-21 92.4 6.9 63 2-66 16-78 (101)
55 cd02975 PfPDO_like_N Pyrococcu 99.7 1.3E-16 2.8E-21 96.0 6.0 62 2-66 24-85 (113)
56 PTZ00102 disulphide isomerase; 99.7 2.5E-16 5.5E-21 114.4 8.3 65 2-66 51-116 (477)
57 cd02951 SoxW SoxW family; SoxW 99.7 7.4E-16 1.6E-20 93.9 8.2 87 1-114 15-105 (125)
58 TIGR01130 ER_PDI_fam protein d 99.7 4.5E-16 9.8E-21 112.3 8.4 64 2-65 20-84 (462)
59 PLN02309 5'-adenylylsulfate re 99.7 5.7E-16 1.2E-20 111.7 8.7 74 1-113 366-441 (457)
60 PTZ00102 disulphide isomerase; 99.6 6.7E-16 1.5E-20 112.2 8.6 63 2-64 377-439 (477)
61 TIGR00424 APS_reduc 5'-adenyly 99.6 1.1E-15 2.3E-20 110.4 9.3 73 2-113 373-447 (463)
62 cd02964 TryX_like_family Trypa 99.6 7.5E-16 1.6E-20 94.8 7.0 89 1-106 18-112 (132)
63 cd02952 TRP14_like Human TRX-r 99.6 1.2E-15 2.6E-20 92.2 7.0 43 2-46 23-72 (119)
64 cd03010 TlpA_like_DsbE TlpA-li 99.6 1.6E-15 3.4E-20 92.6 7.0 92 1-115 26-121 (127)
65 cd03009 TryX_like_TryX_NRX Try 99.6 1.5E-15 3.3E-20 93.2 6.5 92 1-106 19-112 (131)
66 PRK15412 thiol:disulfide inter 99.6 3.2E-15 7E-20 96.9 7.0 91 1-115 69-163 (185)
67 TIGR00411 redox_disulf_1 small 99.6 8.1E-15 1.7E-19 82.9 6.6 58 3-62 2-59 (82)
68 cd02988 Phd_like_VIAF Phosduci 99.6 7.7E-15 1.7E-19 95.6 6.0 59 2-66 104-162 (192)
69 cd02947 TRX_family TRX family; 99.6 2E-14 4.3E-19 82.1 6.8 62 2-66 12-73 (93)
70 PRK14018 trifunctional thiored 99.6 1.5E-14 3.2E-19 105.8 7.6 90 1-106 57-152 (521)
71 KOG0912|consensus 99.6 8.7E-15 1.9E-19 99.4 5.8 79 2-115 15-93 (375)
72 TIGR02738 TrbB type-F conjugat 99.5 2.5E-14 5.4E-19 90.1 7.4 75 2-104 52-129 (153)
73 cd02959 ERp19 Endoplasmic reti 99.5 1.8E-14 3.9E-19 87.1 6.5 43 1-45 20-62 (117)
74 PTZ00062 glutaredoxin; Provisi 99.5 6.8E-14 1.5E-18 91.7 9.5 54 2-66 19-72 (204)
75 TIGR01130 ER_PDI_fam protein d 99.5 3.7E-14 8.1E-19 102.4 8.9 76 1-115 365-441 (462)
76 cd03012 TlpA_like_DipZ_like Tl 99.5 1.9E-14 4.1E-19 87.9 6.2 86 1-106 24-118 (126)
77 TIGR00385 dsbE periplasmic pro 99.5 3.4E-14 7.4E-19 91.2 6.5 83 1-106 64-150 (173)
78 PHA02125 thioredoxin-like prot 99.5 3.8E-14 8.3E-19 79.3 5.4 50 4-61 2-51 (75)
79 cd02973 TRX_GRX_like Thioredox 99.5 5.4E-14 1.2E-18 76.8 5.7 57 3-62 2-58 (67)
80 cd02982 PDI_b'_family Protein 99.5 4.8E-14 1E-18 83.0 5.9 62 2-65 14-77 (103)
81 TIGR01295 PedC_BrcD bacterioci 99.5 7.5E-14 1.6E-18 84.9 6.2 41 2-46 25-65 (122)
82 KOG1731|consensus 99.5 1E-14 2.3E-19 105.8 2.5 64 3-66 60-126 (606)
83 PRK00293 dipZ thiol:disulfide 99.5 2.3E-13 4.9E-18 101.2 8.9 78 1-114 475-556 (571)
84 PRK03147 thiol-disulfide oxido 99.5 2.5E-13 5.3E-18 86.8 7.8 93 1-114 62-158 (173)
85 PF08534 Redoxin: Redoxin; In 99.5 1.9E-13 4E-18 85.2 6.9 86 1-106 29-127 (146)
86 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 1.6E-13 3.5E-18 83.1 6.3 81 1-104 21-104 (123)
87 PRK13728 conjugal transfer pro 99.5 2.9E-13 6.2E-18 87.1 7.7 83 4-114 73-157 (181)
88 TIGR00412 redox_disulf_2 small 99.5 1.7E-13 3.8E-18 76.8 5.7 55 5-65 3-57 (76)
89 TIGR02740 TraF-like TraF-like 99.5 3.5E-13 7.6E-18 92.0 7.9 76 1-106 167-243 (271)
90 PLN02919 haloacid dehalogenase 99.4 1.9E-13 4E-18 107.3 6.8 86 1-106 421-515 (1057)
91 cd02966 TlpA_like_family TlpA- 99.4 5.7E-13 1.2E-17 78.7 7.2 86 1-106 20-110 (116)
92 TIGR02187 GlrX_arch Glutaredox 99.4 5.9E-13 1.3E-17 88.2 6.0 62 3-67 136-197 (215)
93 cd02955 SSP411 TRX domain, SSP 99.4 1.7E-12 3.8E-17 79.1 6.5 48 1-50 16-66 (124)
94 cd02969 PRX_like1 Peroxiredoxi 99.3 9.5E-12 2.1E-16 79.6 8.5 86 1-106 26-122 (171)
95 TIGR02661 MauD methylamine deh 99.3 3E-12 6.5E-17 83.3 6.2 84 1-106 75-159 (189)
96 PF13098 Thioredoxin_2: Thiore 99.3 8.7E-13 1.9E-17 78.7 3.2 86 1-105 6-95 (112)
97 cd00340 GSH_Peroxidase Glutath 99.3 5E-12 1.1E-16 79.5 5.9 41 1-43 23-63 (152)
98 TIGR01626 ytfJ_HI0045 conserve 99.3 5.6E-12 1.2E-16 81.4 6.1 92 1-114 60-166 (184)
99 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 1.1E-11 2.4E-16 74.9 5.9 86 1-106 26-121 (124)
100 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 1.9E-11 4.2E-16 70.4 6.2 60 3-66 15-74 (89)
101 PLN02412 probable glutathione 99.3 2.5E-11 5.4E-16 77.6 7.3 42 1-43 30-71 (167)
102 KOG0191|consensus 99.3 8.3E-12 1.8E-16 89.0 5.5 65 2-66 164-228 (383)
103 PTZ00056 glutathione peroxidas 99.2 6.5E-11 1.4E-15 77.6 7.4 42 1-43 40-81 (199)
104 PF13899 Thioredoxin_7: Thiore 99.2 2.3E-11 5.1E-16 69.0 4.3 61 1-64 18-81 (82)
105 cd02970 PRX_like2 Peroxiredoxi 99.2 8.8E-11 1.9E-15 73.0 7.1 85 2-106 26-142 (149)
106 PLN02399 phospholipid hydroper 99.2 4.9E-11 1.1E-15 79.9 5.5 42 1-43 100-141 (236)
107 cd03017 PRX_BCP Peroxiredoxin 99.1 1.8E-10 3.9E-15 71.1 6.2 86 1-106 24-122 (140)
108 cd02960 AGR Anterior Gradient 99.1 4.6E-10 1E-14 68.7 7.5 41 1-43 24-67 (130)
109 KOG2501|consensus 99.1 1E-10 2.2E-15 73.1 4.6 91 1-104 34-126 (157)
110 COG0526 TrxA Thiol-disulfide i 99.1 2.4E-10 5.2E-15 67.1 6.0 60 1-62 33-95 (127)
111 PRK00522 tpx lipid hydroperoxi 99.1 4.8E-10 1E-14 71.6 7.2 85 1-106 45-143 (167)
112 TIGR02540 gpx7 putative glutat 99.1 2.1E-10 4.5E-15 72.2 5.5 41 1-42 23-63 (153)
113 cd03015 PRX_Typ2cys Peroxiredo 99.1 4.6E-10 1E-14 72.0 6.7 89 1-106 30-132 (173)
114 cd03014 PRX_Atyp2cys Peroxired 99.1 1.1E-09 2.4E-14 67.9 7.5 85 1-106 27-122 (143)
115 cd01659 TRX_superfamily Thiore 99.0 1.1E-09 2.3E-14 57.7 5.9 58 4-64 1-61 (69)
116 COG4232 Thiol:disulfide interc 99.0 4.5E-10 9.7E-15 82.5 5.1 68 1-104 475-545 (569)
117 PTZ00256 glutathione peroxidas 99.0 3.8E-09 8.2E-14 68.4 8.8 40 3-43 44-83 (183)
118 TIGR03137 AhpC peroxiredoxin. 99.0 1.8E-09 3.8E-14 70.2 6.7 89 1-106 32-131 (187)
119 cd03018 PRX_AhpE_like Peroxire 99.0 1.9E-09 4.1E-14 67.2 6.5 85 2-106 30-126 (149)
120 cd02971 PRX_family Peroxiredox 99.0 2.8E-09 6E-14 65.7 7.0 87 1-106 23-122 (140)
121 KOG0914|consensus 99.0 8.3E-10 1.8E-14 72.3 4.0 64 2-66 146-215 (265)
122 PRK13190 putative peroxiredoxi 99.0 3.9E-09 8.5E-14 69.4 7.2 86 3-106 31-129 (202)
123 PRK09437 bcp thioredoxin-depen 98.9 3.8E-09 8.2E-14 66.4 6.0 86 1-106 31-132 (154)
124 PRK15000 peroxidase; Provision 98.9 7.8E-09 1.7E-13 67.9 7.4 89 1-106 35-137 (200)
125 cd02968 SCO SCO (an acronym fo 98.9 1.8E-09 3.8E-14 66.8 3.9 44 1-44 23-69 (142)
126 cd02958 UAS UAS family; UAS is 98.9 5.2E-09 1.1E-13 62.8 5.8 42 1-44 18-62 (114)
127 PRK10382 alkyl hydroperoxide r 98.8 1.7E-08 3.7E-13 65.7 6.8 89 1-106 32-131 (187)
128 TIGR02200 GlrX_actino Glutared 98.8 1.1E-08 2.5E-13 56.7 5.0 50 4-61 2-56 (77)
129 PRK13599 putative peroxiredoxi 98.8 2.5E-08 5.4E-13 66.2 6.4 94 3-109 32-134 (215)
130 TIGR02196 GlrX_YruB Glutaredox 98.8 2E-08 4.3E-13 55.0 4.8 51 4-62 2-56 (74)
131 smart00594 UAS UAS domain. 98.7 5.1E-08 1.1E-12 59.2 6.4 64 1-101 28-94 (122)
132 cd03016 PRX_1cys Peroxiredoxin 98.7 4.1E-08 8.8E-13 64.6 6.3 87 2-106 28-129 (203)
133 PRK13189 peroxiredoxin; Provis 98.7 7E-08 1.5E-12 64.4 7.2 87 2-106 38-138 (222)
134 TIGR02180 GRX_euk Glutaredoxin 98.7 2.8E-08 6E-13 56.1 4.5 54 4-61 1-59 (84)
135 cd03065 PDI_b_Calsequestrin_N 98.7 1.4E-08 3E-13 61.6 3.5 43 70-115 64-106 (120)
136 PTZ00137 2-Cys peroxiredoxin; 98.7 1.3E-07 2.7E-12 64.4 8.1 88 2-106 100-200 (261)
137 TIGR03143 AhpF_homolog putativ 98.7 2.6E-07 5.7E-12 69.0 9.9 96 2-100 368-536 (555)
138 PF13728 TraF: F plasmid trans 98.6 1.1E-07 2.4E-12 63.1 6.5 73 2-104 122-194 (215)
139 PRK13191 putative peroxiredoxi 98.6 1.5E-07 3.3E-12 62.4 7.0 87 3-107 37-137 (215)
140 PRK11509 hydrogenase-1 operon 98.6 7.9E-08 1.7E-12 59.0 4.2 53 13-66 49-101 (132)
141 PF14595 Thioredoxin_9: Thiore 98.5 2.2E-07 4.7E-12 57.1 4.9 60 3-65 44-106 (129)
142 PF13192 Thioredoxin_3: Thiore 98.5 7.2E-07 1.6E-11 49.8 6.5 56 8-69 6-61 (76)
143 PF06110 DUF953: Eukaryotic pr 98.5 6.9E-07 1.5E-11 54.0 6.7 62 2-65 21-98 (119)
144 TIGR02739 TraF type-F conjugat 98.5 5.6E-07 1.2E-11 61.1 7.0 78 2-109 152-230 (256)
145 KOG0913|consensus 98.5 1.7E-08 3.7E-13 66.7 -0.3 63 3-66 42-104 (248)
146 COG2143 Thioredoxin-related pr 98.5 1.6E-06 3.4E-11 54.4 8.0 83 1-106 43-129 (182)
147 PTZ00253 tryparedoxin peroxida 98.5 8.1E-07 1.8E-11 58.2 7.1 94 2-106 38-139 (199)
148 PF03190 Thioredox_DsbH: Prote 98.5 3.3E-07 7.2E-12 58.1 4.7 64 1-66 38-112 (163)
149 PF02114 Phosducin: Phosducin; 98.5 9.3E-07 2E-11 60.4 7.1 64 2-69 148-211 (265)
150 PRK13703 conjugal pilus assemb 98.4 8E-07 1.7E-11 60.1 6.4 79 2-110 145-224 (248)
151 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 4.5E-07 9.8E-12 53.2 4.2 30 37-66 54-83 (104)
152 PRK11200 grxA glutaredoxin 1; 98.4 8.8E-07 1.9E-11 50.4 5.0 39 4-45 3-41 (85)
153 PRK10606 btuE putative glutath 98.4 7.8E-07 1.7E-11 57.7 5.2 41 1-43 26-66 (183)
154 cd02954 DIM1 Dim1 family; Dim1 98.3 1.1E-06 2.4E-11 52.8 4.0 41 71-111 46-86 (114)
155 cd02965 HyaE HyaE family; HyaE 98.3 9.8E-07 2.1E-11 52.7 3.6 37 70-106 60-96 (111)
156 PRK11509 hydrogenase-1 operon 98.3 7.7E-07 1.7E-11 54.7 3.2 36 71-106 69-104 (132)
157 cd02996 PDI_a_ERp44 PDIa famil 98.3 1.9E-06 4.1E-11 51.0 4.3 59 8-66 29-88 (108)
158 cd02976 NrdH NrdH-redoxin (Nrd 98.2 2.6E-06 5.6E-11 46.3 4.5 51 4-62 2-56 (73)
159 PF00085 Thioredoxin: Thioredo 98.2 9.7E-07 2.1E-11 51.3 2.7 43 71-115 49-91 (103)
160 cd02956 ybbN ybbN protein fami 98.2 2.5E-06 5.5E-11 49.2 4.1 43 71-115 44-86 (96)
161 PF00462 Glutaredoxin: Glutare 98.2 4.7E-06 1E-10 44.2 4.7 50 4-61 1-54 (60)
162 TIGR02183 GRXA Glutaredoxin, G 98.1 5.8E-06 1.3E-10 47.2 4.3 55 4-61 2-62 (86)
163 KOG0910|consensus 98.1 3.1E-06 6.6E-11 52.8 3.2 37 70-106 92-128 (150)
164 KOG3425|consensus 98.1 1.1E-05 2.4E-10 48.3 5.3 42 3-46 28-77 (128)
165 KOG0911|consensus 98.1 1E-06 2.2E-11 58.1 0.6 62 2-66 19-80 (227)
166 cd02999 PDI_a_ERp44_like PDIa 98.0 6.5E-06 1.4E-10 48.3 3.6 43 71-116 49-92 (100)
167 KOG1672|consensus 98.0 1.4E-05 3.1E-10 51.8 5.3 62 2-66 86-147 (211)
168 cd02997 PDI_a_PDIR PDIa family 98.0 1E-05 2.2E-10 47.1 4.2 19 48-66 67-85 (104)
169 cd03419 GRX_GRXh_1_2_like Glut 98.0 2E-05 4.3E-10 44.1 4.7 51 4-60 2-57 (82)
170 KOG3414|consensus 98.0 4.2E-05 9E-10 46.3 6.1 64 1-66 24-87 (142)
171 TIGR02190 GlrX-dom Glutaredoxi 97.9 2.3E-05 5.1E-10 43.9 4.5 34 4-45 10-43 (79)
172 TIGR02194 GlrX_NrdH Glutaredox 97.9 2.3E-05 5.1E-10 43.0 4.1 49 5-61 2-53 (72)
173 cd02985 TRX_CDSP32 TRX family, 97.9 1.3E-05 2.8E-10 47.2 3.2 41 71-113 46-89 (103)
174 cd03000 PDI_a_TMX3 PDIa family 97.9 2.7E-05 5.9E-10 45.7 4.4 42 71-115 50-91 (104)
175 cd02066 GRX_family Glutaredoxi 97.9 4.2E-05 9.1E-10 41.2 4.9 35 4-46 2-36 (72)
176 cd02975 PfPDO_like_N Pyrococcu 97.9 1.8E-05 3.8E-10 47.4 3.4 44 71-114 53-96 (113)
177 PRK10996 thioredoxin 2; Provis 97.9 2E-05 4.2E-10 48.9 3.7 43 70-114 83-125 (139)
178 TIGR03143 AhpF_homolog putativ 97.8 3.3E-05 7E-10 57.9 4.7 54 6-62 482-535 (555)
179 TIGR02189 GlrX-like_plant Glut 97.8 6.1E-05 1.3E-09 44.1 4.9 50 4-61 10-66 (99)
180 PHA03050 glutaredoxin; Provisi 97.8 7.4E-05 1.6E-09 44.5 5.2 53 4-61 15-74 (108)
181 TIGR01068 thioredoxin thioredo 97.8 4.4E-05 9.5E-10 43.9 4.2 36 71-106 46-81 (101)
182 TIGR02181 GRX_bact Glutaredoxi 97.8 3.6E-05 7.8E-10 42.9 3.6 48 5-60 2-53 (79)
183 PF02966 DIM1: Mitosis protein 97.8 0.00037 8E-09 42.6 8.1 64 1-66 21-85 (133)
184 PRK09381 trxA thioredoxin; Pro 97.8 4.3E-05 9.3E-10 45.1 4.0 42 71-114 53-94 (109)
185 PRK15317 alkyl hydroperoxide r 97.8 6.4E-05 1.4E-09 55.9 5.4 56 4-62 120-175 (517)
186 PHA02278 thioredoxin-like prot 97.7 3.2E-05 6.8E-10 45.7 3.0 35 72-106 47-85 (103)
187 cd03418 GRX_GRXb_1_3_like Glut 97.7 8.2E-05 1.8E-09 40.9 4.6 35 4-46 2-36 (75)
188 cd02957 Phd_like Phosducin (Ph 97.7 3.2E-05 7E-10 46.2 3.1 35 71-106 55-89 (113)
189 cd03027 GRX_DEP Glutaredoxin ( 97.7 9.3E-05 2E-09 40.7 4.7 50 4-61 3-56 (73)
190 cd02989 Phd_like_TxnDC9 Phosdu 97.7 3.9E-05 8.4E-10 46.0 3.4 36 71-106 53-88 (113)
191 KOG0912|consensus 97.7 6.9E-05 1.5E-09 51.9 4.9 47 19-66 36-82 (375)
192 PTZ00443 Thioredoxin domain-co 97.7 4.4E-05 9.6E-10 51.1 3.7 36 70-105 83-118 (224)
193 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 8.2E-05 1.8E-09 48.6 4.6 99 2-106 79-184 (197)
194 PTZ00051 thioredoxin; Provisio 97.7 3.6E-05 7.7E-10 44.5 2.5 36 71-106 49-84 (98)
195 cd02972 DsbA_family DsbA famil 97.7 0.00016 3.4E-09 41.1 5.2 85 4-101 1-91 (98)
196 PRK10329 glutaredoxin-like pro 97.7 0.00016 3.5E-09 40.8 5.1 51 4-62 3-56 (81)
197 cd02984 TRX_PICOT TRX domain, 97.7 5.5E-05 1.2E-09 43.5 3.2 37 70-106 45-81 (97)
198 cd02962 TMX2 TMX2 family; comp 97.7 4.2E-05 9.1E-10 48.2 2.9 36 71-106 80-121 (152)
199 COG3118 Thioredoxin domain-con 97.7 6.6E-05 1.4E-09 51.8 4.0 37 70-106 74-110 (304)
200 cd02949 TRX_NTR TRX domain, no 97.7 5.5E-05 1.2E-09 43.8 3.1 36 71-106 45-80 (97)
201 cd02947 TRX_family TRX family; 97.7 5.8E-05 1.3E-09 42.3 3.2 36 70-105 40-75 (93)
202 PRK15317 alkyl hydroperoxide r 97.7 0.00077 1.7E-08 50.2 9.8 84 2-99 20-175 (517)
203 KOG4277|consensus 97.7 4.2E-05 9.2E-10 53.0 3.0 42 72-116 79-120 (468)
204 cd03029 GRX_hybridPRX5 Glutare 97.6 0.0002 4.4E-09 39.2 5.0 35 4-46 3-37 (72)
205 PF13743 Thioredoxin_5: Thiore 97.6 1.3E-05 2.8E-10 51.7 -0.5 35 6-42 2-36 (176)
206 KOG0907|consensus 97.6 5.6E-05 1.2E-09 44.9 2.2 37 70-106 51-87 (106)
207 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 7.5E-05 1.6E-09 43.5 2.8 28 39-66 55-82 (101)
208 COG1225 Bcp Peroxiredoxin [Pos 97.5 0.00048 1E-08 43.6 6.2 85 2-106 32-132 (157)
209 cd02948 TRX_NDPK TRX domain, T 97.5 0.00014 3E-09 42.6 3.4 34 72-106 51-84 (102)
210 cd03006 PDI_a_EFP1_N PDIa fami 97.5 0.00011 2.4E-09 44.1 2.7 27 40-66 67-94 (113)
211 PF13848 Thioredoxin_6: Thiore 97.5 0.0017 3.7E-08 41.4 8.3 78 18-101 8-159 (184)
212 PRK10638 glutaredoxin 3; Provi 97.4 0.00039 8.5E-09 39.2 4.7 52 1-60 1-56 (83)
213 PRK10877 protein disulfide iso 97.4 0.00019 4E-09 48.3 3.4 26 2-27 109-134 (232)
214 TIGR03140 AhpF alkyl hydropero 97.4 0.00037 8.1E-09 51.9 5.2 56 4-62 121-176 (515)
215 TIGR03140 AhpF alkyl hydropero 97.4 0.003 6.6E-08 47.1 9.8 85 3-100 21-177 (515)
216 cd02994 PDI_a_TMX PDIa family, 97.3 0.00023 5E-09 41.3 3.0 40 74-116 52-91 (101)
217 COG0695 GrxC Glutaredoxin and 97.3 0.00067 1.4E-08 38.2 4.7 51 4-62 3-59 (80)
218 cd02987 Phd_like_Phd Phosducin 97.3 0.00028 6.1E-09 45.5 3.5 36 70-106 113-148 (175)
219 PF05768 DUF836: Glutaredoxin- 97.3 0.00055 1.2E-08 38.5 4.3 54 4-62 2-55 (81)
220 cd02991 UAS_ETEA UAS family, E 97.3 0.00069 1.5E-08 40.8 4.8 58 1-63 18-83 (116)
221 cd02986 DLP Dim1 family, Dim1- 97.3 0.0004 8.6E-09 41.7 3.7 35 72-106 47-81 (114)
222 cd03005 PDI_a_ERp46 PDIa famil 97.3 0.00029 6.2E-09 40.8 3.0 28 39-66 56-83 (102)
223 cd02963 TRX_DnaJ TRX domain, D 97.3 0.00019 4.1E-09 42.7 2.3 39 74-114 60-98 (111)
224 PF07912 ERp29_N: ERp29, N-ter 97.2 0.0063 1.4E-07 36.9 7.9 45 71-116 54-107 (126)
225 cd03013 PRX5_like Peroxiredoxi 97.2 0.0021 4.5E-08 40.6 6.0 83 2-103 32-131 (155)
226 cd03028 GRX_PICOT_like Glutare 97.1 0.0013 2.8E-08 37.7 4.7 43 10-60 21-67 (90)
227 PRK12759 bifunctional gluaredo 97.1 0.0011 2.5E-08 48.1 5.4 54 1-62 1-66 (410)
228 cd03023 DsbA_Com1_like DsbA fa 97.1 0.0016 3.5E-08 40.2 5.5 29 2-30 7-35 (154)
229 TIGR00365 monothiol glutaredox 97.1 0.0013 2.8E-08 38.3 4.7 44 10-61 25-72 (97)
230 PF13848 Thioredoxin_6: Thiore 97.0 0.0027 5.9E-08 40.4 6.0 60 3-64 98-159 (184)
231 cd02961 PDI_a_family Protein D 97.0 0.00064 1.4E-08 38.7 2.7 53 8-66 26-81 (101)
232 cd03001 PDI_a_P5 PDIa family, 97.0 0.00071 1.5E-08 39.2 2.7 27 40-66 56-82 (103)
233 cd02982 PDI_b'_family Protein 96.9 0.0015 3.2E-08 37.9 3.6 36 70-105 43-82 (103)
234 cd03002 PDI_a_MPD1_like PDI fa 96.9 0.00097 2.1E-08 39.1 2.6 19 48-66 66-84 (109)
235 PF11009 DUF2847: Protein of u 96.9 0.0048 1E-07 36.5 5.3 63 2-66 21-88 (105)
236 TIGR01126 pdi_dom protein disu 96.8 0.0013 2.9E-08 37.8 2.5 30 37-66 50-79 (102)
237 PF07449 HyaE: Hydrogenase-1 e 96.7 0.00084 1.8E-08 39.9 1.5 33 73-105 62-94 (107)
238 cd02998 PDI_a_ERp38 PDIa famil 96.7 0.0021 4.5E-08 37.1 3.0 56 8-66 29-85 (105)
239 PF13462 Thioredoxin_4: Thiore 96.7 0.011 2.4E-07 36.8 6.5 42 2-43 14-55 (162)
240 cd02978 KaiB_like KaiB-like fa 96.6 0.012 2.7E-07 32.4 5.5 59 2-61 2-60 (72)
241 PLN00410 U5 snRNP protein, DIM 96.6 0.0033 7.1E-08 39.3 3.5 34 71-104 55-89 (142)
242 cd03019 DsbA_DsbA DsbA family, 96.5 0.0051 1.1E-07 39.1 4.3 38 2-41 17-54 (178)
243 cd02950 TxlA TRX-like protein 96.4 0.0046 9.9E-08 38.5 3.4 34 72-105 53-89 (142)
244 TIGR00411 redox_disulf_1 small 96.4 0.0054 1.2E-07 33.9 3.4 29 71-99 31-59 (82)
245 cd02993 PDI_a_APS_reductase PD 96.3 0.005 1.1E-07 36.3 3.2 26 41-66 61-88 (109)
246 cd02973 TRX_GRX_like Thioredox 96.3 0.0068 1.5E-07 32.4 3.3 29 71-99 30-58 (67)
247 KOG1752|consensus 96.2 0.02 4.3E-07 33.9 5.1 36 4-45 16-51 (104)
248 cd02992 PDI_a_QSOX PDIa family 96.2 0.0075 1.6E-07 36.0 3.4 57 8-66 30-88 (114)
249 cd02952 TRP14_like Human TRX-r 96.1 0.011 2.4E-07 35.8 3.8 36 71-106 60-103 (119)
250 cd02983 P5_C P5 family, C-term 96.1 0.02 4.2E-07 35.2 4.9 49 17-66 41-91 (130)
251 cd02981 PDI_b_family Protein D 96.0 0.085 1.8E-06 30.1 7.3 33 82-116 54-86 (97)
252 cd03026 AhpF_NTD_C TRX-GRX-lik 96.0 0.0072 1.6E-07 34.6 2.7 33 71-105 43-75 (89)
253 KOG2603|consensus 96.0 0.016 3.6E-07 40.4 4.7 61 3-63 63-133 (331)
254 PRK10824 glutaredoxin-4; Provi 96.0 0.015 3.2E-07 35.1 3.9 45 10-62 28-76 (115)
255 PF01216 Calsequestrin: Calseq 95.8 0.0081 1.8E-07 42.6 2.7 44 70-116 89-132 (383)
256 cd02988 Phd_like_VIAF Phosduci 95.8 0.0094 2E-07 39.0 2.8 35 69-106 131-165 (192)
257 KOG0908|consensus 95.7 0.01 2.2E-07 40.3 2.8 36 71-106 52-87 (288)
258 cd03073 PDI_b'_ERp72_ERp57 PDI 95.7 0.035 7.6E-07 33.1 4.9 50 13-64 31-85 (111)
259 PRK10954 periplasmic protein d 95.7 0.018 4E-07 37.9 3.8 38 2-41 39-79 (207)
260 KOG1731|consensus 95.7 0.019 4.1E-07 43.2 4.2 34 70-103 91-126 (606)
261 KOG3170|consensus 95.6 0.074 1.6E-06 35.1 6.1 59 2-66 113-171 (240)
262 TIGR02654 circ_KaiB circadian 95.5 0.067 1.4E-06 30.6 5.1 59 2-61 4-62 (87)
263 cd02995 PDI_a_PDI_a'_C PDIa fa 95.5 0.018 4E-07 33.1 2.9 55 8-66 29-83 (104)
264 PHA02125 thioredoxin-like prot 95.3 0.018 3.9E-07 31.7 2.5 26 73-98 26-51 (75)
265 PTZ00062 glutaredoxin; Provisi 95.3 0.016 3.6E-07 38.3 2.7 29 71-107 48-76 (204)
266 PF07449 HyaE: Hydrogenase-1 e 95.3 0.015 3.1E-07 34.6 2.2 60 4-65 29-91 (107)
267 cd03007 PDI_a_ERp29_N PDIa fam 95.3 0.0065 1.4E-07 36.6 0.7 23 44-66 66-90 (116)
268 KOG3171|consensus 95.3 0.086 1.9E-06 35.2 5.7 61 2-66 161-221 (273)
269 cd03072 PDI_b'_ERp44 PDIb' fam 95.2 0.11 2.3E-06 31.0 5.8 48 15-64 29-81 (111)
270 PRK09301 circadian clock prote 95.1 0.094 2E-06 30.9 5.1 60 2-62 7-66 (103)
271 KOG2640|consensus 95.1 0.0025 5.5E-08 44.3 -1.8 99 3-105 79-198 (319)
272 cd02955 SSP411 TRX domain, SSP 94.9 0.059 1.3E-06 32.8 3.9 34 71-104 50-91 (124)
273 PLN02309 5'-adenylylsulfate re 94.7 0.031 6.8E-07 41.3 2.9 26 41-66 405-432 (457)
274 TIGR01295 PedC_BrcD bacterioci 94.5 0.06 1.3E-06 32.6 3.4 23 84-106 77-103 (122)
275 COG1331 Highly conserved prote 94.4 0.058 1.3E-06 41.4 3.7 64 1-66 44-118 (667)
276 cd02977 ArsC_family Arsenate R 94.3 0.055 1.2E-06 31.7 2.8 33 5-45 2-34 (105)
277 cd03031 GRX_GRX_like Glutaredo 93.8 0.2 4.3E-06 31.5 4.8 51 4-62 2-66 (147)
278 cd02959 ERp19 Endoplasmic reti 93.7 0.22 4.7E-06 29.9 4.6 32 74-105 54-89 (117)
279 PF01216 Calsequestrin: Calseq 93.4 0.29 6.4E-06 35.0 5.4 63 3-66 54-122 (383)
280 cd02983 P5_C P5 family, C-term 93.2 0.27 5.8E-06 30.1 4.6 44 72-116 58-103 (130)
281 PRK01655 spxA transcriptional 93.1 0.2 4.3E-06 30.7 3.9 35 4-46 2-36 (131)
282 COG0450 AhpC Peroxiredoxin [Po 93.1 0.48 1E-05 31.1 5.7 88 2-106 35-136 (194)
283 PF07689 KaiB: KaiB domain; I 93.1 0.074 1.6E-06 30.1 1.8 54 7-61 3-56 (82)
284 KOG0914|consensus 92.9 0.1 2.3E-06 34.9 2.5 38 70-107 176-219 (265)
285 cd01659 TRX_superfamily Thiore 92.9 0.25 5.5E-06 24.5 3.7 33 71-103 28-63 (69)
286 cd03036 ArsC_like Arsenate Red 92.6 0.23 4.9E-06 29.5 3.6 34 5-46 2-35 (111)
287 cd03035 ArsC_Yffb Arsenate Red 92.3 0.27 5.8E-06 29.0 3.5 33 5-45 2-34 (105)
288 TIGR00424 APS_reduc 5'-adenyly 92.1 0.16 3.4E-06 37.8 2.9 53 8-66 382-438 (463)
289 COG1999 Uncharacterized protei 92.1 0.96 2.1E-05 30.0 6.3 65 1-65 68-139 (207)
290 cd03060 GST_N_Omega_like GST_N 91.9 0.25 5.4E-06 26.5 2.9 51 5-61 2-53 (71)
291 COG4545 Glutaredoxin-related p 91.7 0.49 1.1E-05 26.3 3.8 21 5-25 5-25 (85)
292 PF02630 SCO1-SenC: SCO1/SenC; 91.4 0.85 1.8E-05 29.3 5.4 45 1-45 53-99 (174)
293 PRK12559 transcriptional regul 91.3 0.52 1.1E-05 28.9 4.2 34 4-45 2-35 (131)
294 PF02114 Phosducin: Phosducin; 91.2 0.26 5.7E-06 34.0 3.0 38 67-105 173-210 (265)
295 TIGR00412 redox_disulf_2 small 91.2 0.3 6.4E-06 26.9 2.8 29 72-105 31-59 (76)
296 cd02958 UAS UAS family; UAS is 91.1 0.36 7.9E-06 28.5 3.3 22 81-102 64-85 (114)
297 cd00570 GST_N_family Glutathio 91.1 0.33 7.2E-06 25.0 2.9 21 5-25 2-22 (71)
298 TIGR01617 arsC_related transcr 90.8 0.33 7.2E-06 29.0 3.0 34 5-46 2-35 (117)
299 cd03032 ArsC_Spx Arsenate Redu 90.8 0.7 1.5E-05 27.5 4.4 34 4-45 2-35 (115)
300 PRK11657 dsbG disulfide isomer 90.5 0.46 1E-05 32.4 3.8 26 2-27 119-144 (251)
301 smart00594 UAS UAS domain. 90.3 0.58 1.3E-05 28.1 3.7 10 52-61 82-91 (122)
302 COG2143 Thioredoxin-related pr 89.9 0.13 2.8E-06 32.7 0.6 23 44-66 103-125 (182)
303 PHA03075 glutaredoxin-like pro 89.7 0.49 1.1E-05 28.5 2.9 28 2-29 3-30 (123)
304 PF06053 DUF929: Domain of unk 89.5 1.5 3.3E-05 30.0 5.5 56 1-65 59-114 (249)
305 cd03051 GST_N_GTT2_like GST_N 89.3 0.45 9.8E-06 25.3 2.5 21 5-25 2-22 (74)
306 cd03041 GST_N_2GST_N GST_N fam 89.0 1.7 3.7E-05 23.7 4.7 21 5-25 3-23 (77)
307 PRK13344 spxA transcriptional 88.9 1.2 2.5E-05 27.5 4.3 34 4-45 2-35 (132)
308 cd03037 GST_N_GRX2 GST_N famil 88.8 0.89 1.9E-05 24.2 3.4 19 6-24 3-21 (71)
309 cd02953 DsbDgamma DsbD gamma f 88.1 0.25 5.5E-06 28.5 1.0 55 8-65 22-81 (104)
310 cd02951 SoxW SoxW family; SoxW 87.5 0.26 5.6E-06 29.5 0.8 23 44-66 72-94 (125)
311 cd03059 GST_N_SspA GST_N famil 87.3 0.86 1.9E-05 24.2 2.8 21 5-25 2-22 (73)
312 PF13905 Thioredoxin_8: Thiore 87.0 0.27 5.9E-06 27.8 0.7 45 19-65 47-91 (95)
313 TIGR02742 TrbC_Ftype type-F co 86.9 0.51 1.1E-05 29.1 1.8 24 81-104 59-82 (130)
314 PF04592 SelP_N: Selenoprotein 86.6 1.7 3.8E-05 29.4 4.3 44 2-45 28-73 (238)
315 KOG3171|consensus 86.4 4.9 0.00011 27.2 6.3 38 68-106 187-224 (273)
316 cd03010 TlpA_like_DsbE TlpA-li 86.0 1.1 2.4E-05 26.7 3.0 41 21-65 69-109 (127)
317 cd03011 TlpA_like_ScsD_MtbDsbE 85.9 1.8 4E-05 25.5 4.0 42 20-66 62-103 (123)
318 KOG1672|consensus 85.9 0.6 1.3E-05 30.8 1.8 36 70-105 114-149 (211)
319 PF09673 TrbC_Ftype: Type-F co 85.6 1.1 2.3E-05 26.8 2.7 21 82-102 60-80 (113)
320 COG3019 Predicted metal-bindin 85.2 1.7 3.6E-05 27.2 3.4 44 4-55 28-71 (149)
321 cd02974 AhpF_NTD_N Alkyl hydro 84.1 6.1 0.00013 22.8 6.3 49 3-66 22-70 (94)
322 PF09673 TrbC_Ftype: Type-F co 84.0 0.8 1.7E-05 27.4 1.7 42 17-62 36-77 (113)
323 cd03045 GST_N_Delta_Epsilon GS 83.3 1.1 2.3E-05 24.0 1.9 51 5-61 2-56 (74)
324 KOG2603|consensus 83.3 2.4 5.3E-05 30.0 4.0 32 71-102 104-135 (331)
325 PF00837 T4_deiodinase: Iodoth 82.7 1.5 3.4E-05 29.7 2.8 38 1-40 103-140 (237)
326 COG3531 Predicted protein-disu 82.5 1.2 2.5E-05 29.5 2.1 29 1-29 1-29 (212)
327 cd03040 GST_N_mPGES2 GST_N fam 81.2 2.8 6.2E-05 22.6 3.2 21 4-24 2-22 (77)
328 cd03025 DsbA_FrnE_like DsbA fa 81.0 1.1 2.5E-05 28.6 1.7 27 4-30 3-29 (193)
329 PF01323 DSBA: DSBA-like thior 80.4 9.7 0.00021 24.2 5.9 42 3-45 1-42 (193)
330 KOG0913|consensus 80.2 1.8 3.9E-05 29.4 2.4 43 71-116 72-114 (248)
331 cd03072 PDI_b'_ERp44 PDIb' fam 80.1 4.9 0.00011 23.8 4.1 34 70-103 48-83 (111)
332 cd03067 PDI_b_PDIR_N PDIb fami 79.7 7.8 0.00017 23.0 4.6 50 3-55 22-73 (112)
333 cd03025 DsbA_FrnE_like DsbA fa 79.5 4 8.6E-05 26.1 3.9 24 81-104 157-180 (193)
334 cd03033 ArsC_15kD Arsenate Red 79.3 3.3 7.2E-05 24.7 3.2 34 4-45 2-35 (113)
335 cd02991 UAS_ETEA UAS family, E 78.7 2 4.4E-05 25.8 2.2 20 81-100 64-83 (116)
336 PF03190 Thioredox_DsbH: Prote 78.5 2.2 4.8E-05 27.3 2.4 36 71-106 72-116 (163)
337 TIGR02742 TrbC_Ftype type-F co 78.1 2.5 5.4E-05 26.0 2.5 24 43-66 58-81 (130)
338 cd02960 AGR Anterior Gradient 77.8 6.3 0.00014 24.3 4.1 22 92-114 78-99 (130)
339 cd03055 GST_N_Omega GST_N fami 75.8 9.6 0.00021 21.3 4.4 20 5-24 20-39 (89)
340 cd03019 DsbA_DsbA DsbA family, 75.3 1.6 3.5E-05 27.4 1.2 31 81-113 131-162 (178)
341 COG1651 DsbG Protein-disulfide 75.2 11 0.00023 25.2 5.1 30 2-31 86-115 (244)
342 cd03073 PDI_b'_ERp72_ERp57 PDI 74.4 7.7 0.00017 23.0 3.8 32 71-102 51-86 (111)
343 PF13417 GST_N_3: Glutathione 73.9 12 0.00025 20.1 5.2 50 6-61 1-51 (75)
344 PRK11657 dsbG disulfide isomer 72.2 3 6.5E-05 28.5 1.9 22 81-102 207-228 (251)
345 COG1393 ArsC Arsenate reductas 71.4 6.6 0.00014 23.6 3.1 21 4-24 3-23 (117)
346 cd03008 TryX_like_RdCVF Trypar 71.2 5.9 0.00013 24.8 2.9 22 45-66 101-122 (146)
347 PRK10026 arsenate reductase; P 70.9 8 0.00017 24.2 3.4 24 1-24 1-24 (141)
348 PF04134 DUF393: Protein of un 69.9 8.2 0.00018 22.5 3.3 44 7-54 2-45 (114)
349 COG2761 FrnE Predicted dithiol 69.5 3 6.6E-05 28.1 1.4 32 1-32 4-36 (225)
350 PRK10853 putative reductase; P 67.7 8.4 0.00018 23.2 3.0 21 4-24 2-22 (118)
351 cd03074 PDI_b'_Calsequestrin_C 67.3 25 0.00054 21.1 5.0 47 3-49 23-69 (120)
352 PF05988 DUF899: Bacterial pro 67.3 12 0.00026 25.1 3.8 78 9-106 82-168 (211)
353 cd03034 ArsC_ArsC Arsenate Red 65.8 8.2 0.00018 22.8 2.7 33 5-45 2-34 (112)
354 TIGR00385 dsbE periplasmic pro 65.1 9.4 0.0002 24.2 3.0 30 36-65 117-146 (173)
355 TIGR00014 arsC arsenate reduct 63.5 9.5 0.00021 22.6 2.7 33 5-45 2-34 (114)
356 PRK13730 conjugal transfer pil 63.3 5.6 0.00012 26.5 1.7 21 81-101 150-170 (212)
357 cd03056 GST_N_4 GST_N family, 63.1 5.5 0.00012 20.9 1.5 21 5-25 2-22 (73)
358 PF03960 ArsC: ArsC family; I 60.4 20 0.00044 20.9 3.7 32 7-46 1-32 (110)
359 PRK14018 trifunctional thiored 59.4 6 0.00013 30.1 1.5 28 38-65 121-148 (521)
360 TIGR01616 nitro_assoc nitrogen 57.4 20 0.00044 21.8 3.4 21 4-24 3-23 (126)
361 COG3634 AhpF Alkyl hydroperoxi 56.0 16 0.00034 27.0 3.0 52 7-61 123-174 (520)
362 TIGR02743 TraW type-F conjugat 55.4 8.2 0.00018 25.7 1.5 24 77-100 169-192 (202)
363 cd06538 CIDE_N_FSP27 CIDE_N do 55.1 10 0.00023 21.3 1.7 28 84-111 29-56 (79)
364 cd06537 CIDE_N_B CIDE_N domain 54.5 10 0.00022 21.4 1.6 27 85-111 30-56 (81)
365 PF00255 GSHPx: Glutathione pe 52.8 47 0.001 19.7 5.8 42 2-45 23-64 (108)
366 PRK13738 conjugal transfer pil 50.8 11 0.00025 25.1 1.6 23 77-99 167-189 (209)
367 PRK00293 dipZ thiol:disulfide 50.6 7.8 0.00017 29.8 0.9 55 8-65 485-543 (571)
368 cd06539 CIDE_N_A CIDE_N domain 49.9 14 0.00031 20.6 1.7 28 84-111 29-57 (78)
369 TIGR02652 conserved hypothetic 48.3 6.8 0.00015 24.5 0.3 14 10-23 10-23 (163)
370 PF09654 DUF2396: Protein of u 48.1 6.6 0.00014 24.5 0.2 14 10-23 7-20 (161)
371 PF06764 DUF1223: Protein of u 46.8 76 0.0016 21.1 5.0 25 4-28 2-26 (202)
372 COG3634 AhpF Alkyl hydroperoxi 46.2 44 0.00096 24.7 4.0 56 35-100 121-176 (520)
373 cd03052 GST_N_GDAP1 GST_N fami 45.4 34 0.00074 18.3 2.8 51 5-61 2-56 (73)
374 cd03049 GST_N_3 GST_N family, 45.2 46 0.001 17.4 3.8 19 6-24 3-21 (73)
375 cd03069 PDI_b_ERp57 PDIb famil 44.6 28 0.0006 20.1 2.5 34 81-116 54-92 (104)
376 KOG3414|consensus 44.5 49 0.0011 20.5 3.5 32 73-104 57-88 (142)
377 COG3531 Predicted protein-disu 44.4 27 0.00058 23.3 2.5 23 83-105 164-186 (212)
378 cd03066 PDI_b_Calsequestrin_mi 44.3 37 0.0008 19.4 3.0 33 81-115 55-88 (102)
379 KOG0911|consensus 43.1 11 0.00024 25.4 0.7 36 71-106 48-83 (227)
380 cd03053 GST_N_Phi GST_N family 42.9 30 0.00065 18.2 2.3 22 4-25 2-23 (76)
381 PF06122 TraH: Conjugative rel 42.8 20 0.00044 25.9 2.0 22 10-31 95-116 (361)
382 KOG0852|consensus 42.7 40 0.00087 22.1 3.1 42 2-44 35-77 (196)
383 cd03021 DsbA_GSTK DsbA family, 41.4 25 0.00053 23.1 2.1 35 4-40 3-37 (209)
384 KOG2792|consensus 40.7 78 0.0017 22.2 4.4 42 2-43 141-187 (280)
385 COG2077 Tpx Peroxiredoxin [Pos 40.3 99 0.0021 19.8 5.9 87 4-110 49-147 (158)
386 smart00266 CAD Domains present 39.4 26 0.00057 19.4 1.7 28 84-111 27-55 (74)
387 cd01615 CIDE_N CIDE_N domain, 39.0 26 0.00057 19.6 1.6 28 84-111 29-57 (78)
388 TIGR03759 conj_TIGR03759 integ 38.7 47 0.001 22.1 3.0 81 4-103 112-197 (200)
389 COG0386 BtuE Glutathione perox 38.4 89 0.0019 20.1 4.1 41 2-44 27-67 (162)
390 PF06491 Disulph_isomer: Disul 36.8 28 0.00061 21.6 1.7 23 91-113 93-118 (136)
391 COG0278 Glutaredoxin-related p 34.8 31 0.00067 20.4 1.6 33 9-48 27-59 (105)
392 PF10589 NADH_4Fe-4S: NADH-ubi 33.7 28 0.0006 17.2 1.1 20 11-30 18-37 (46)
393 cd03054 GST_N_Metaxin GST_N fa 33.5 43 0.00093 17.5 2.0 16 9-24 13-28 (72)
394 COG0295 Cdd Cytidine deaminase 33.4 32 0.00069 21.4 1.5 15 9-23 85-99 (134)
395 PRK12411 cytidine deaminase; P 33.3 26 0.00057 21.5 1.2 13 10-22 84-96 (132)
396 KOG0855|consensus 33.2 95 0.0021 20.3 3.7 49 2-53 92-146 (211)
397 PF02017 CIDE-N: CIDE-N domain 32.5 31 0.00066 19.3 1.3 28 84-111 29-57 (78)
398 KOG0854|consensus 32.4 83 0.0018 20.8 3.3 41 3-44 34-76 (224)
399 PRK05578 cytidine deaminase; V 32.3 29 0.00063 21.3 1.3 15 9-23 83-97 (131)
400 PLN02182 cytidine deaminase 31.9 24 0.00052 25.5 0.9 14 9-22 129-142 (339)
401 PF07511 DUF1525: Protein of u 31.8 35 0.00076 20.6 1.5 14 87-100 77-90 (114)
402 COG5270 PUA domain (predicted 31.6 16 0.00035 24.0 0.1 26 3-30 8-33 (202)
403 cd03070 PDI_b_ERp44 PDIb famil 30.6 54 0.0012 18.9 2.1 24 92-116 62-85 (91)
404 KOG0833|consensus 30.4 40 0.00087 21.9 1.7 17 8-24 101-117 (173)
405 TIGR03757 conj_TIGR03757 integ 30.1 40 0.00086 20.3 1.5 13 88-100 79-91 (113)
406 PF15379 DUF4606: Domain of un 29.8 58 0.0013 19.3 2.1 16 9-24 31-46 (104)
407 cd06536 CIDE_N_ICAD CIDE_N dom 29.7 42 0.0009 18.9 1.5 28 84-111 29-59 (80)
408 PF11551 Omp28: Outer membrane 29.4 18 0.00039 23.6 0.0 23 81-103 7-29 (184)
409 COG0525 ValS Valyl-tRNA synthe 28.6 1.6E+02 0.0036 24.3 5.0 33 9-43 172-204 (877)
410 PF04900 Fcf1: Fcf1; InterPro 27.7 51 0.0011 18.9 1.7 26 77-102 68-94 (101)
411 PF11287 DUF3088: Protein of u 27.6 65 0.0014 19.4 2.1 52 11-65 23-77 (112)
412 cd03022 DsbA_HCCA_Iso DsbA fam 27.1 1.1E+02 0.0024 19.2 3.4 25 6-30 3-27 (192)
413 TIGR02949 anti_SigH_actin anti 26.4 78 0.0017 17.7 2.3 21 10-30 37-57 (84)
414 PLN02402 cytidine deaminase 26.0 78 0.0017 22.6 2.6 17 6-22 98-114 (303)
415 PF02042 RWP-RK: RWP-RK domain 25.8 45 0.00098 17.1 1.1 16 81-96 31-46 (52)
416 PF00403 HMA: Heavy-metal-asso 25.7 1E+02 0.0022 15.5 4.0 32 9-46 6-37 (62)
417 cd03058 GST_N_Tau GST_N family 25.1 92 0.002 16.2 2.4 20 6-25 3-22 (74)
418 PF07700 HNOB: Heme NO binding 24.9 1.9E+02 0.0041 18.3 5.0 40 3-43 130-169 (171)
419 cd03030 GRX_SH3BGR Glutaredoxi 24.4 1.5E+02 0.0032 16.9 4.0 39 8-47 5-43 (92)
420 cd03039 GST_N_Sigma_like GST_N 24.4 85 0.0018 16.3 2.1 20 6-25 3-22 (72)
421 TIGR03765 ICE_PFL_4695 integra 24.2 54 0.0012 19.5 1.4 19 80-98 80-98 (105)
422 PF11072 DUF2859: Protein of u 23.9 50 0.0011 20.7 1.2 19 80-98 118-136 (142)
423 cd03080 GST_N_Metaxin_like GST 23.7 1.3E+02 0.0027 15.9 2.9 14 11-24 16-29 (75)
424 cd05855 Ig_TrkB_d5 Fifth domai 23.7 58 0.0013 17.9 1.4 15 93-107 11-25 (79)
425 PF14437 MafB19-deam: MafB19-l 23.4 2E+02 0.0044 18.2 3.8 19 9-30 108-126 (146)
426 PF11834 DUF3354: Domain of un 23.3 62 0.0013 17.6 1.4 22 86-109 36-57 (69)
427 PF13120 DUF3974: Domain of un 23.3 57 0.0012 19.1 1.3 23 6-28 31-53 (126)
428 COG2957 Peptidylarginine deimi 23.0 3E+02 0.0066 20.0 5.0 75 9-105 36-110 (346)
429 KOG1651|consensus 22.8 2.3E+02 0.0049 18.5 4.1 42 2-44 36-77 (171)
430 KOG2852|consensus 22.5 50 0.0011 23.7 1.2 34 7-40 61-100 (380)
431 PRK06848 hypothetical protein; 21.5 65 0.0014 20.0 1.4 14 9-22 94-107 (139)
432 TIGR02451 anti_sig_ChrR anti-s 20.8 1.1E+02 0.0023 20.4 2.5 21 10-30 29-49 (215)
433 PHA02513 V1 structural protein 20.8 48 0.001 20.0 0.7 24 7-30 34-57 (135)
434 PF04908 SH3BGR: SH3-binding, 20.8 1.9E+02 0.0042 16.8 3.5 38 8-46 6-43 (99)
435 PF03227 GILT: Gamma interfero 20.3 2E+02 0.0042 16.8 4.0 21 4-24 3-24 (108)
436 PRK04011 peptide chain release 20.2 67 0.0014 23.8 1.5 34 19-52 366-400 (411)
437 cd05863 Ig2_VEGFR-3 Second imm 20.2 65 0.0014 17.0 1.1 13 94-106 12-24 (67)
438 cd03061 GST_N_CLIC GST_N famil 20.1 1.9E+02 0.0041 16.5 3.5 46 10-61 20-66 (91)
No 1
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=7.1e-22 Score=118.20 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+.+.|.++++++++++ .+.++++|++++++++++++|+++||+++|++|
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 689999999999999999999999999986 678999999999999999999999999999986
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=1.5e-21 Score=117.25 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
.+++|+|||+||++|+.+.|.++++++.+++ .+. ++++||+
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~-------------------------------------~~~Vd~d 70 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVL-------------------------------------FVAINCW 70 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeE-------------------------------------EEEEECC
Confidence 3689999999999999999999999999875 344 4555656
Q ss_pred Cccchh-hhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 81 EHGPLC-KEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 81 ~~~~~~-~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.+.+++ ++|+|.++||+.+|++|+. ...|.|..
T Consensus 71 ~~~~l~~~~~~I~~~PTl~lf~~g~~--~~~y~G~~ 104 (113)
T cd03006 71 WPQGKCRKQKHFFYFPVIHLYYRSRG--PIEYKGPM 104 (113)
T ss_pred CChHHHHHhcCCcccCEEEEEECCcc--ceEEeCCC
Confidence 556666 4677777777777776654 36677664
No 3
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=8.9e-21 Score=111.76 Aligned_cols=74 Identities=24% Similarity=0.606 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|+||++||++|+++.|.++++++.+++ .+ .++.+|+++
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~-------------------------------------~~~~vd~~~ 60 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VI-------------------------------------RIGAVNCGD 60 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcC--ce-------------------------------------EEEEEeCCc
Confidence 689999999999999999999999999875 34 445566666
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+..++++++|+++||+++|++|+. ...|.|..+
T Consensus 61 ~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~G~~~ 93 (101)
T cd03003 61 DRMLCRSQGVNSYPSLYVFPSGMN--PEKYYGDRS 93 (101)
T ss_pred cHHHHHHcCCCccCEEEEEcCCCC--cccCCCCCC
Confidence 667777888888888888877754 356777653
No 4
>KOG0910|consensus
Probab=99.85 E-value=2.4e-21 Score=119.51 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI 67 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v 67 (116)
.||+|+|||+||++|+.+.|.++++.+++.+ .+.++++|.+++.+++.+|+|+.+||+++|++|.
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe 126 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGE 126 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEEEECCE
Confidence 3799999999999999999999999999987 8999999999999999999999999999888863
No 5
>PHA02278 thioredoxin-like protein
Probab=99.82 E-value=2.9e-20 Score=110.04 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+.+.|.++++++.+.. .+.+.++|++.+ ++++++++|+++||+++|++|
T Consensus 16 ~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 16 DVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred cEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 689999999999999999999999887654 466788888875 356666666666666666654
No 6
>KOG0907|consensus
Probab=99.82 E-value=2.8e-20 Score=110.36 Aligned_cols=63 Identities=32% Similarity=0.552 Sum_probs=58.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.+++|+|||+|||+|+.+.|.+.+++++|++ +.|+++|++++.++++++++...||+.|+++|
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence 3689999999999999999999999999984 89999999998899999999999999999886
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=1.6e-19 Score=107.61 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=64.6
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|.|||+||++|+++.|.++++++.+++.. + .. +.+.++.+||++
T Consensus 20 ~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~------------~---~~------------------~~~~~~~vd~d~ 66 (108)
T cd02996 20 LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF------------P---DA------------------GKVVWGKVDCDK 66 (108)
T ss_pred EEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc------------C---CC------------------CcEEEEEEECCC
Confidence 68999999999999999999999998875421 0 00 135678888888
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+.+++++|+|+++||+++|++|+.. ...|.|..+
T Consensus 67 ~~~l~~~~~v~~~Ptl~~~~~g~~~-~~~~~g~~~ 100 (108)
T cd02996 67 ESDIADRYRINKYPTLKLFRNGMMM-KREYRGQRS 100 (108)
T ss_pred CHHHHHhCCCCcCCEEEEEeCCcCc-ceecCCCCC
Confidence 8889999999999999999887643 577888653
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.81 E-value=1.1e-19 Score=107.61 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=48.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~ 65 (116)
.+++|+|||+||++|+.+.|.++++++.++ .+.++++|++++. +++++++|+++||++++++
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 379999999999999999999999999983 5788888887764 4555555555555555554
No 9
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=1.3e-19 Score=108.61 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
.+++|+|||+||++|+.+.|.++++++.+++. ++.++++|+++++.++++++|+++||++++++
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 47999999999999999999999999999753 36666776666666666666666666665554
No 10
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.81 E-value=1.1e-19 Score=107.13 Aligned_cols=40 Identities=18% Similarity=0.479 Sum_probs=33.4
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
.+++|+|||+||++|+.+.|.++++++.+++ +.++++|.+
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~ 58 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEES 58 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECC
Confidence 4799999999999999999999999999863 555555544
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=1.4e-19 Score=107.07 Aligned_cols=74 Identities=32% Similarity=0.612 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|+|||+||++|+++.|.++++++.+++ .+ .++.+|++.
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~-------------------------------------~~~~vd~~~ 61 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKG--KV-------------------------------------KVGSVDCQK 61 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcC--Cc-------------------------------------EEEEEECCc
Confidence 689999999999999999999999999864 34 445556666
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+.+++++++|+++||+++|++|++ ....|.|..
T Consensus 62 ~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~~G~~ 94 (104)
T cd03004 62 YESLCQQANIRAYPTIRLYPGNAS-KYHSYNGWH 94 (104)
T ss_pred hHHHHHHcCCCcccEEEEEcCCCC-CceEccCCC
Confidence 666777777777777777766632 145566643
No 12
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.80 E-value=2.1e-19 Score=107.02 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=60.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.+|+|+|+|+||++|+.+.|.++++++++++ .+.++++|+++.+++++.|+++..||++||+++
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 4799999999999999999999999999975 499999999999999999999999999999987
No 13
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=3.9e-19 Score=104.65 Aligned_cols=43 Identities=30% Similarity=0.598 Sum_probs=32.2
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
++|+|||+||++|+++.|.++++++.+++. .+.++++|+++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~ 61 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP 61 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH
Confidence 689999999999999999999999876532 2444444444433
No 14
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.80 E-value=7.3e-19 Score=116.34 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=86.2
Q ss_pred EEEEEEc---CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee------
Q psy3452 3 YSILFYS---PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI------ 69 (116)
Q Consensus 3 v~v~F~a---~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f------ 69 (116)
.++.|++ +||++|+.+.|.++++++.+++. .+.++.+|.+++++++++|+|+++||+++|++| ..|
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~ 100 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAG 100 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCH
Confidence 4666888 99999999999999999998532 366777777799999999999999999999885 112
Q ss_pred --------------------------------------------------------------ceeeEEEEeccCccchhh
Q psy3452 70 --------------------------------------------------------------IRLALAAIDCTEHGPLCK 87 (116)
Q Consensus 70 --------------------------------------------------------------~~~~~~~v~~~~~~~~~~ 87 (116)
+.+.+..+|.+.+.++++
T Consensus 101 ~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~ 180 (215)
T TIGR02187 101 YEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE 180 (215)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH
Confidence 467778899999999999
Q ss_pred hcCCCCCCEEEEecCCc
Q psy3452 88 EYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 88 ~~~v~~~Pt~~~~~~g~ 104 (116)
+|+|.++||++++++|.
T Consensus 181 ~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 181 KYGVMSVPKIVINKGVE 197 (215)
T ss_pred HhCCccCCEEEEecCCE
Confidence 99999999999997764
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=8.3e-19 Score=104.39 Aligned_cols=78 Identities=40% Similarity=0.798 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|.|||+||++|+++.|.++++++.+++ .+.++.+|++++ +
T Consensus 20 ~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~-----------------------------------~ 62 (109)
T cd03002 20 TTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDED-----------------------------------K 62 (109)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCcc-----------------------------------c
Confidence 689999999999999999999999998875 444555444431 1
Q ss_pred ccchhhhcCCCCCCEEEEecCCcc---cCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNK---QSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~---~~~~~y~g~~~ 116 (116)
+.+++++|+|+++||+++|++|+. .....|.|..+
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~ 100 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERS 100 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccC
Confidence 567888899999999999988762 24577888653
No 16
>KOG0191|consensus
Probab=99.79 E-value=6.6e-19 Score=125.20 Aligned_cols=111 Identities=36% Similarity=0.674 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce---------------
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT--------------- 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~--------------- 66 (116)
.++|+||+|||++|+++.|.+.++++.+.+ .+.+..+||+++.+++++|++.++||+.+|+++
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~ 126 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESL 126 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHH
Confidence 579999999999999999999999999998 799999999999999999999999999999887
Q ss_pred ----------------------------------------eee-------------------------ceeeEEEEeccC
Q psy3452 67 ----------------------------------------IMI-------------------------IRLALAAIDCTE 81 (116)
Q Consensus 67 ----------------------------------------v~f-------------------------~~~~~~~v~~~~ 81 (116)
+.| ..+..+.++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~ 206 (383)
T KOG0191|consen 127 AEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV 206 (383)
T ss_pred HHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch
Confidence 111 467888889889
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+..++++++|+++||+.+|++|.+ ....|.|.+
T Consensus 207 ~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R 239 (383)
T KOG0191|consen 207 HKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLR 239 (383)
T ss_pred HHHHhhhhcccCCceEEEecCCCc-ccccccccc
Confidence 999999999999999999998877 445565544
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=4.5e-19 Score=103.45 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
+++|+||++||++|+++.|.++++++.+++ .+.++++|+++++.+++++++.++||++++++
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 75 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA 75 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeC
Confidence 789999999999999999999999999876 46666666666555555555555555555444
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.78 E-value=1.2e-18 Score=102.52 Aligned_cols=75 Identities=32% Similarity=0.716 Sum_probs=53.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
+++|+|||+||++|+++.|.++++++.+++.. .+ .++.+|++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~-------------------------------------~~~~vd~~ 60 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSV-------------------------------------KIAKVDCT 60 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcE-------------------------------------EEEEEECC
Confidence 47999999999999999999999999987521 34 44555555
Q ss_pred CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.+..++++|+|+++||+++|++|+. ...|.|..
T Consensus 61 ~~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~G~~ 93 (102)
T cd03005 61 QHRELCSEFQVRGYPTLLLFKDGEK--VDKYKGTR 93 (102)
T ss_pred CChhhHhhcCCCcCCEEEEEeCCCe--eeEeeCCC
Confidence 5556666777777777777766653 24555543
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=2.4e-18 Score=102.82 Aligned_cols=75 Identities=24% Similarity=0.541 Sum_probs=57.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
.+++|.||++||++|+++.|.++++++.+++. .+.+ +.++++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~-------------------------------------~~vd~d 63 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKV-------------------------------------AKFNAD 63 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEE-------------------------------------EEEECC
Confidence 37899999999999999999999999998752 2444 444544
Q ss_pred C-ccchhh-hcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 81 E-HGPLCK-EYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 81 ~-~~~~~~-~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
. +..+++ .++|+++||+++|++|+. ....|+|+
T Consensus 64 ~~~~~~~~~~~~v~~~Pti~~f~~~~~-~~~~y~g~ 98 (109)
T cd02993 64 GEQREFAKEELQLKSFPTILFFPKNSR-QPIKYPSE 98 (109)
T ss_pred ccchhhHHhhcCCCcCCEEEEEcCCCC-CceeccCC
Confidence 4 345555 488899999998877754 35778884
No 20
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.78 E-value=1e-18 Score=103.30 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+.+.|.++++++.+++. .+.++.+|++ +.+++++|+++++||++++++|
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 6899999999999999999999999998753 3677777777 5566777777777777777664
No 21
>KOG0190|consensus
Probab=99.78 E-value=4.7e-19 Score=127.47 Aligned_cols=76 Identities=38% Similarity=0.708 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
.++|.||||||+||++++|.+++.++.+...+ +.+..++|||.+
T Consensus 44 ~vlVeFYAPWCghck~LaPey~kAA~~Lke~~------------------------------------s~i~LakVDat~ 87 (493)
T KOG0190|consen 44 FVLVEFYAPWCGHCKALAPEYEKAATELKEEG------------------------------------SPVKLAKVDATE 87 (493)
T ss_pred eEEEEEEchhhhhhhhhCcHHHHHHHHhhccC------------------------------------CCceeEEeecch
Confidence 57899999999999999999999999998753 234456666666
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+.++|.+|+|++|||+.+|++|.. +..|+|.+
T Consensus 88 ~~~~~~~y~v~gyPTlkiFrnG~~--~~~Y~G~r 119 (493)
T KOG0190|consen 88 ESDLASKYEVRGYPTLKIFRNGRS--AQDYNGPR 119 (493)
T ss_pred hhhhHhhhcCCCCCeEEEEecCCc--ceeccCcc
Confidence 666777777777777777777765 56677654
No 22
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.7e-19 Score=119.41 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=58.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.||+|+||+|||++|+.+.|.++++..++++ .++++++||+.++.++..|+|+++||++.|.+|
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dG 107 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDG 107 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeEEEeeCC
Confidence 3899999999999999999999999999998 788988888888888888888888888888776
No 23
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=3.6e-18 Score=102.88 Aligned_cols=78 Identities=31% Similarity=0.659 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
.+++|+||++||++|+.+.|.++++++.+++.. +.+.++.+||+
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~------------------------------------~~v~~~~vd~~ 63 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR------------------------------------PVVRVAAVDCA 63 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC------------------------------------CceEEEEEecc
Confidence 379999999999999999999999999886422 12344555553
Q ss_pred --CccchhhhcCCCCCCEEEEecCCccc--CCcCCCCC
Q psy3452 81 --EHGPLCKEYDIKGYPTFQYFHYFNKQ--SPSPYHND 114 (116)
Q Consensus 81 --~~~~~~~~~~v~~~Pt~~~~~~g~~~--~~~~y~g~ 114 (116)
.+.+++++|+|+++||+++|++|.+. .+..|+|.
T Consensus 64 ~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~ 101 (114)
T cd02992 64 DEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGP 101 (114)
T ss_pred chhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCC
Confidence 35678889999999999999888644 34677764
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=3.6e-18 Score=100.56 Aligned_cols=74 Identities=36% Similarity=0.724 Sum_probs=56.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|.||++||++|+++.|.+.++++.+++ .+ .++.+|++.
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~-------------------------------------~~~~id~~~ 60 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IV-------------------------------------KVGAVDADV 60 (103)
T ss_pred cEEEEEECCCCHHHHHHhHHHHHHHHHhcC--Cc-------------------------------------eEEEEECcc
Confidence 589999999999999999999999998864 33 345556666
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+.+++++|+|+++||+++|++|+. ....|.|..
T Consensus 61 ~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~~g~~ 93 (103)
T cd03001 61 HQSLAQQYGVRGFPTIKVFGAGKN-SPQDYQGGR 93 (103)
T ss_pred hHHHHHHCCCCccCEEEEECCCCc-ceeecCCCC
Confidence 667777788888888888877632 356777765
No 25
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=1.8e-18 Score=102.43 Aligned_cols=64 Identities=31% Similarity=0.657 Sum_probs=43.8
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 64 (116)
.+++|.||++||++|+++.|.++++++.+++.+ .+.+..+|+++.+.++++++++++||+++++
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 368999999999999999999999999986532 3555555555444444444444444444443
No 26
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.77 E-value=1.5e-18 Score=107.50 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=58.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE-EcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH-HLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~~ 66 (116)
.+|+|+|||+||++|+.+.|.++++++++++ .+.++++|+++++++++.|+|++.||++ ||++|
T Consensus 24 ~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 24 RLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 3799999999999999999999999999987 6888999999999999999999776666 88886
No 27
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.76 E-value=6.9e-18 Score=99.38 Aligned_cols=77 Identities=34% Similarity=0.618 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|+||++||++|+.+.|.++++++.+++... +.++.+|+++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~id~~~ 62 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDN-------------------------------------VVIAKMDATA 62 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCC-------------------------------------EEEEEEeCcc
Confidence 689999999999999999999999999875322 4455566655
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+ +++..+++.++||+++|++|++.....|.|..+
T Consensus 63 ~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~ 96 (104)
T cd02995 63 N-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRT 96 (104)
T ss_pred h-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcC
Confidence 4 466678888999999998887445677888754
No 28
>KOG4277|consensus
Probab=99.76 E-value=3.7e-19 Score=120.78 Aligned_cols=102 Identities=26% Similarity=0.448 Sum_probs=84.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce--eee---------
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT--IMI--------- 69 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~--v~f--------- 69 (116)
.|+|+||||||+||+++.|.|.++...+++.+ .+.+.++|++..+.++++++++++||+.||+++ ++|
T Consensus 45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~i 124 (468)
T KOG4277|consen 45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAI 124 (468)
T ss_pred eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHH
Confidence 58999999999999999999999999998887 899999999999999999999999999999999 333
Q ss_pred ---ce-eeEEEEec-cCccchhhhcCCCCCCEEEEecCC
Q psy3452 70 ---IR-LALAAIDC-TEHGPLCKEYDIKGYPTFQYFHYF 103 (116)
Q Consensus 70 ---~~-~~~~~v~~-~~~~~~~~~~~v~~~Pt~~~~~~g 103 (116)
.. +.-+-+.. .++......++.+..|.++++.-|
T Consensus 125 ieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtg 163 (468)
T KOG4277|consen 125 IEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTG 163 (468)
T ss_pred HHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCC
Confidence 22 22222222 245566667889999999999655
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.76 E-value=3.2e-18 Score=107.55 Aligned_cols=64 Identities=13% Similarity=0.269 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc------cceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG------YPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~------~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+.+.|.++++++.+++. ++.++++|++++++++++++|++ +||+++|++|
T Consensus 49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 49 TWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence 6899999999999999999999999998753 48899999999988888888877 7888887775
No 30
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=4.3e-18 Score=99.97 Aligned_cols=63 Identities=38% Similarity=0.653 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+.+.|.++++++.+++ ++.++.+|+++++.+++++++.++||++++++|
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred CEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 689999999999999999999999999987 577777777766666666666666666666654
No 31
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.75 E-value=1.5e-17 Score=97.99 Aligned_cols=78 Identities=32% Similarity=0.650 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
++++|.||++||++|+++.|.++++++.++...+ +.++.+|++
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~id~~ 61 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDD-------------------------------------VVIAKVDAD 61 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCC-------------------------------------EEEEEEECC
Confidence 3689999999999999999999999999873223 344556666
Q ss_pred C-ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 81 E-HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 81 ~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
. +.+++++++|+++||+++|++|++ ....|.|.++
T Consensus 62 ~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~~g~~~ 97 (105)
T cd02998 62 EANKDLAKKYGVSGFPTLKFFPKGST-EPVKYEGGRD 97 (105)
T ss_pred CcchhhHHhCCCCCcCEEEEEeCCCC-CccccCCccC
Confidence 6 677788888888888888877643 3567777653
No 32
>KOG0190|consensus
Probab=99.75 E-value=4e-18 Score=122.70 Aligned_cols=76 Identities=34% Similarity=0.598 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
-|+|.||||||+||+++.|.++++++.+++..++.++++|.+.|+
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd----------------------------------- 430 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND----------------------------------- 430 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc-----------------------------------
Confidence 489999999999999999999999999998666777666666654
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
-- ...+++||||++++.|.+..++.|+|+.+
T Consensus 431 --~~--~~~~~~fPTI~~~pag~k~~pv~y~g~R~ 461 (493)
T KOG0190|consen 431 --VP--SLKVDGFPTILFFPAGHKSNPVIYNGDRT 461 (493)
T ss_pred --Cc--cccccccceEEEecCCCCCCCcccCCCcc
Confidence 11 34567799999999999888999999864
No 33
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.74 E-value=4.5e-18 Score=102.30 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+.+.|.+++++++++ .+.++++|.++++++++++++..+||+++|++|
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEEEEECC
Confidence 68999999999999999999999999986 479999999999999999999999999999886
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.74 E-value=1.6e-17 Score=97.41 Aligned_cols=76 Identities=34% Similarity=0.640 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
.+++|.||++||++|+.+.+.++++++.+++.+ ++.++.+|++
T Consensus 14 ~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~d~~ 56 (102)
T TIGR01126 14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-------------------------------------DIVLAKVDAT 56 (102)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-------------------------------------ceEEEEEEcc
Confidence 368999999999999999999999999886532 2445566666
Q ss_pred CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.+..++++|+|+++|++++|++|+. ...|.|.+
T Consensus 57 ~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~g~~ 89 (102)
T TIGR01126 57 AEKDLASRFGVSGFPTIKFFPKGKK--PVDYEGGR 89 (102)
T ss_pred chHHHHHhCCCCcCCEEEEecCCCc--ceeecCCC
Confidence 6677777777777888877777654 45666654
No 35
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.74 E-value=4.5e-18 Score=102.23 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+.+.|.++++++.++ .+.++++|++++ .++++++++++||+++|++|
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECC
Confidence 68999999999999999999999999986 477888888877 78888888888888888775
No 36
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=1e-17 Score=99.86 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+.+.|.++++++.+++ .+.++.+|++.++.++++++++.+||++++++|
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G 85 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 85 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCC
Confidence 689999999999999999999999999986 578888888877777777777777777777654
No 37
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=8.1e-18 Score=100.17 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=54.0
Q ss_pred eEEEEEEcCC--CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPG--CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~w--C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++| |++|+.+.|.++++++++++ .+.++++|++++++++++|+|+++||+++|++|
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 4789999997 99999999999999999987 677888888888877777777777777777765
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.73 E-value=1.6e-17 Score=96.86 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=54.4
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.+++|.||++||++|+++.|.++++++.+.. .+.++++|.++.++++++|+++++||+++|++|
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 3789999999999999999999999999743 688888888888777788888888888777764
No 39
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.73 E-value=8.7e-18 Score=111.48 Aligned_cols=63 Identities=35% Similarity=0.640 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+++.|.++++++.+++ .+.+.++|++++++++++++|+++||+++|++|
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G 116 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGYPTLLLFDKG 116 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCcCCEEEEEECC
Confidence 689999999999999999999999999986 688889999988888888888888888888875
No 40
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.73 E-value=7.2e-18 Score=102.10 Aligned_cols=62 Identities=6% Similarity=0.079 Sum_probs=42.0
Q ss_pred eEEEEEEcCCCHH--HH--hhhHHHHHHHHHh--ccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 2 FYSILFYSPGCGY--CK--KAKPEYVKAAEVL--KDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 2 ~v~v~F~a~wC~~--C~--~~~~~~~~~~~~~--~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
+++++||++||++ |+ .+.|.+.+++.++ ++ .+.++++|++++++++++|+|+++||+++|++
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~ 96 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKD 96 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCCccccEEEEEEC
Confidence 6899999999987 99 7788999998887 54 45555555555555444444444444444444
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.72 E-value=5e-17 Score=96.14 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=57.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
.+++|.||++||++|+.+.+.+ .++++.+++ .+.++.+|+++++.
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~------------------------------ 59 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP------------------------------ 59 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH------------------------------
Confidence 4789999999999999999988 678888875 58888887765431
Q ss_pred eccCccchhhhcCCCCCCEEEEecC--CcccCCcCCCCCC
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHY--FNKQSPSPYHNDY 115 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~y~g~~ 115 (116)
...+++++|+|+++||+++|++ |+. ...+.|..
T Consensus 60 ---~~~~~~~~~~i~~~Pti~~~~~~~g~~--~~~~~G~~ 94 (104)
T cd02953 60 ---EITALLKRFGVFGPPTYLFYGPGGEPE--PLRLPGFL 94 (104)
T ss_pred ---HHHHHHHHcCCCCCCEEEEECCCCCCC--Cccccccc
Confidence 1346777888888888888874 333 35555543
No 42
>PRK10996 thioredoxin 2; Provisional
Probab=99.72 E-value=3e-17 Score=102.02 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+.+.|.+.++++.+.+ .+.++++|++++++++++++|+++||+++|++|
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G 116 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMIFKNG 116 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECC
Confidence 689999999999999999999999998876 678888888777777777777777777777654
No 43
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.72 E-value=3e-17 Score=96.69 Aligned_cols=76 Identities=47% Similarity=0.878 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|+||++||++|+++.|.++++++.+++...+.++.+|++.. .
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------------------~ 63 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-----------------------------------E 63 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-----------------------------------c
Confidence 58999999999999999999999999887432455555555441 0
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
+..++++++|+++||++++++|+.+ ..|.|.
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~g~ 94 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFENGKFV--EKYEGE 94 (104)
T ss_pred cHHHHHhCCCccccEEEEEeCCCee--EEeCCC
Confidence 4556667777777777777666542 455554
No 44
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.72 E-value=2.6e-17 Score=102.74 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=65.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC------cceEEEEEeCCCccccc----ccCCccccceEEEcCceeeec
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN------HKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMII 70 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~ 70 (116)
.+++|+|||+||++|++++|.+.++.+.++++ .++.++.|+.+++.+.. ++.++.. |
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~-~------------ 92 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKW-L------------ 92 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCc-e------------
Confidence 47999999999999999999999998877643 15889999888765433 3333321 1
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
...+.......++++|++.++||+++++..+++
T Consensus 93 ---~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 93 ---FLPFEDEFRRELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred ---eecccchHHHHHHHHcCCCCCCEEEEECCCCcE
Confidence 111122234579999999999999999766654
No 45
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.71 E-value=2.5e-17 Score=98.71 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=63.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe---CCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID---CTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd---~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
.+++|.||++||++|+++.|.++++.+.+++ .+.++.+. .++..++++++++..+|++.
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~---------------- 83 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVL---------------- 83 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe----------------
Confidence 3789999999999999999999999888765 45555442 22334567778887777431
Q ss_pred eccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
+.++.++|+++..|+++++++.++
T Consensus 84 ----~~~~~~~~~~~~~P~~~vid~~G~ 107 (114)
T cd02967 84 ----SAELGMAYQVSKLPYAVLLDEAGV 107 (114)
T ss_pred ----cHHHHhhcCCCCcCeEEEECCCCe
Confidence 235788999999999999976655
No 46
>KOG0908|consensus
Probab=99.70 E-value=1.6e-17 Score=109.76 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=61.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceee
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIM 68 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~ 68 (116)
+.++|+|+|+||++|+.+.|.+..++.+|+ ...|++||+++.+.+++.+||...||+++|++++.
T Consensus 22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 22 KLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred eEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 368999999999999999999999999998 58999999999999999999999999999999833
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=2.3e-16 Score=91.79 Aligned_cols=76 Identities=38% Similarity=0.752 Sum_probs=57.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+++|.||++||++|+++.|.++++++.++.. ..+.++.++++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~~~~ 59 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGD-------------------------------------GKVVVAKVDCTA 59 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccC-------------------------------------CceEEEEeeccc
Confidence 5899999999999999999999999988421 134555666666
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+..++++|+|+++||++++++++ .....|.|..
T Consensus 60 ~~~~~~~~~i~~~Pt~~~~~~~~-~~~~~~~g~~ 92 (101)
T cd02961 60 NNDLCSEYGVRGYPTIKLFPNGS-KEPVKYEGPR 92 (101)
T ss_pred hHHHHHhCCCCCCCEEEEEcCCC-cccccCCCCc
Confidence 67777788888888888887663 2356666654
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.69 E-value=1.2e-16 Score=93.45 Aligned_cols=63 Identities=27% Similarity=0.483 Sum_probs=53.6
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
++++.||++||+.|+.+.|.++++++.+++ .+.+..+|+++++++++++++.++||+++++++
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g 77 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK 77 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECC
Confidence 689999999999999999999999999876 688888888877777777777777777777653
No 49
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.69 E-value=8.9e-17 Score=93.50 Aligned_cols=92 Identities=23% Similarity=0.338 Sum_probs=64.5
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccc-cceEEEcCceeeeceeeEEEEec
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG-YPTFHHLALTIMIIRLALAAIDC 79 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~~v~f~~~~~~~v~~ 79 (116)
++++|+|||+||++|++..|.+.++.+.+++...+.++.++.+++.+..+++--+. .| .....++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~-------------~~~~~~~~ 68 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFP-------------WYNVPFDD 68 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTS-------------SEEEETTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCC-------------ceEEeeCc
Confidence 47999999999999999999999999999943378888888887643333221111 01 11122333
Q ss_pred cCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 80 TEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
.....+.+.|+|+++|++++++++++
T Consensus 69 ~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 69 DNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred chHHHHHHHCCCCcCCEEEEECCCCC
Confidence 45678999999999999999977665
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=1.4e-16 Score=99.36 Aligned_cols=62 Identities=23% Similarity=0.448 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc--ccccccCCccccceEEEcC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLA 64 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 64 (116)
.+++|+|||+||++|+.+.|.++++++.+.+ .+.++.++++.+ ..++++|++.++||+++|+
T Consensus 21 k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~ 84 (142)
T cd02950 21 KPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLD 84 (142)
T ss_pred CEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEEC
Confidence 3789999999999999999999999999976 566777776654 4778899999999999996
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.69 E-value=1.1e-16 Score=93.62 Aligned_cols=62 Identities=24% Similarity=0.486 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+||++||++|+++.|.++++++.++ .+.+..+|++++..++++++++++||++++++|
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 68999999999999999999999999775 477777777776666666676666666666553
No 52
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.68 E-value=1e-16 Score=103.03 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=55.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+|+|+||++||++|+.+.|.++++++.++ .+.|+++|+++. .++++|++..+||+++|++|
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G 145 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDALPALLVYKGG 145 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCCCEEEEEECC
Confidence 79999999999999999999999999986 589999999887 78888999999999988886
No 53
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.68 E-value=1.8e-16 Score=95.16 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=56.3
Q ss_pred eEEEEEEc--CCCH---HHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 2 FYSILFYS--PGCG---YCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 2 ~v~v~F~a--~wC~---~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+||.||| |||+ +|++++|.+.+.+. .+.+++|||+...+
T Consensus 20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~----------------------------- 64 (116)
T cd03007 20 YSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE----------------------------- 64 (116)
T ss_pred cEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-----------------------------
Confidence 58999999 8888 77777766655332 35555555543321
Q ss_pred EeccCccchhhhcCCC--CCCEEEEecCCcccCCcCCCCC-CC
Q psy3452 77 IDCTEHGPLCKEYDIK--GYPTFQYFHYFNKQSPSPYHND-YT 116 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y~g~-~~ 116 (116)
.++.+++++|+|+ +|||+.+|++|+...++.|+|. .+
T Consensus 65 ---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~ 104 (116)
T cd03007 65 ---KLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVT 104 (116)
T ss_pred ---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCccc
Confidence 3467899999999 9999999999865457899995 54
No 54
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.68 E-value=2e-16 Score=92.45 Aligned_cols=63 Identities=24% Similarity=0.427 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|.||++||++|+.+.|.++++++.+++ .+.++.+|+++++.+++++++..+||+++++++
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 689999999999999999999999988875 588888888887777777777777777777654
No 55
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.67 E-value=1.3e-16 Score=95.97 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.++|.||++||++|+.+.|.++++++.+ + .+.+..+|.+++++++++|+++++||+++++++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence 4788999999999999999999999886 3 688999998888888888888888888888764
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.67 E-value=2.5e-16 Score=114.37 Aligned_cols=65 Identities=40% Similarity=0.806 Sum_probs=52.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|+|||+||++|+++.|.++++++.+.+.. ++.++++||+++.++++++++.++||+++|+++
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKG 116 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECC
Confidence 58999999999999999999999998886532 577777777777777777777777777776664
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.66 E-value=7.4e-16 Score=93.94 Aligned_cols=87 Identities=20% Similarity=0.397 Sum_probs=62.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHH---HHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYV---KAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
.+++|.||++||++|+++.|.+. ++.+.+++ .+.++.+|.+++..... +..
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~-~~~----------------------- 68 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTD-FDG----------------------- 68 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeec-cCC-----------------------
Confidence 37899999999999999999884 56666655 68889999887654321 110
Q ss_pred eccCccchhhhcCCCCCCEEEEecCC-cccCCcCCCCC
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHYF-NKQSPSPYHND 114 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~y~g~ 114 (116)
...+..+++++|+|+++||+++++++ +++ ...+.|.
T Consensus 69 ~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~-~~~~~G~ 105 (125)
T cd02951 69 EALSEKELARKYRVRFTPTVIFLDPEGGKE-IARLPGY 105 (125)
T ss_pred CCccHHHHHHHcCCccccEEEEEcCCCCce-eEEecCC
Confidence 11356788999999999999999775 443 2344443
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.66 E-value=4.5e-16 Score=112.27 Aligned_cols=64 Identities=42% Similarity=0.773 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
+++|+|||+||++|+++.|.+.++++.+.+.. ++.++.+||+++.++++++++.++||+++|++
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 58999999999999999999999999887542 46666666666666666666666666666655
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=5.7e-16 Score=111.68 Aligned_cols=74 Identities=23% Similarity=0.494 Sum_probs=56.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
++++|+|||+||++|+++.|.++++++.+.+. .+. ++.+|++
T Consensus 366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~-------------------------------------f~kVD~d 407 (457)
T PLN02309 366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVK-------------------------------------VAKFRAD 407 (457)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeE-------------------------------------EEEEECC
Confidence 36899999999999999999999999998753 244 4555555
Q ss_pred -Cccchhh-hcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452 81 -EHGPLCK-EYDIKGYPTFQYFHYFNKQSPSPYHN 113 (116)
Q Consensus 81 -~~~~~~~-~~~v~~~Pt~~~~~~g~~~~~~~y~g 113 (116)
.+.++++ +|+|+++||+++|++|.+ .++.|.|
T Consensus 408 ~~~~~la~~~~~I~~~PTil~f~~g~~-~~v~Y~~ 441 (457)
T PLN02309 408 GDQKEFAKQELQLGSFPTILLFPKNSS-RPIKYPS 441 (457)
T ss_pred CcchHHHHhhCCCceeeEEEEEeCCCC-CeeecCC
Confidence 4455665 588888888888877754 3677764
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=6.7e-16 Score=112.15 Aligned_cols=63 Identities=27% Similarity=0.508 Sum_probs=43.3
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 64 (116)
+++|+|||+||++|+++.|.++++++.+++.+.+.++++|++.++..+++++++++||+++|+
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVK 439 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEE
Confidence 689999999999999999999999999876434555555555554444444444433333333
No 61
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=1.1e-15 Score=110.40 Aligned_cols=73 Identities=22% Similarity=0.528 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+|+|+|||+||++|+.+.|.++++++++++. .+.+ +.++++.
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~-------------------------------------~kVdvD~ 414 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKV-------------------------------------AKFRADG 414 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEE-------------------------------------EEEECCC
Confidence 6899999999999999999999999998763 1444 4444443
Q ss_pred cc-ch-hhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452 82 HG-PL-CKEYDIKGYPTFQYFHYFNKQSPSPYHN 113 (116)
Q Consensus 82 ~~-~~-~~~~~v~~~Pt~~~~~~g~~~~~~~y~g 113 (116)
+. .+ +++|+|+++||+++|++|+. .++.|.|
T Consensus 415 ~~~~~~~~~~~I~~~PTii~Fk~g~~-~~~~Y~~ 447 (463)
T TIGR00424 415 DQKEFAKQELQLGSFPTILFFPKHSS-RPIKYPS 447 (463)
T ss_pred CccHHHHHHcCCCccceEEEEECCCC-CceeCCC
Confidence 32 33 35788889999999988753 3577864
No 62
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.64 E-value=7.5e-16 Score=94.79 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=62.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccC-cceEEEEEeCCCcccc----cccCCccccceEEEcCceeeeceeeEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDN-HKVALAAIDCTEHGPL----CKEYDIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
.+++|+||++||++|++++|.++++.+.+++. ..+.++.++.+.+.+. .++++ ..+ ..
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~--~~~---------------~~ 80 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP--PWL---------------AV 80 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC--CeE---------------ee
Confidence 47899999999999999999999999988764 2577777777765432 22332 111 01
Q ss_pred EEec-cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 76 AIDC-TEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 76 ~v~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
.... .....+.+.|+|.++||++++++++++
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1111 234567888999999999999765554
No 63
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.63 E-value=1.2e-15 Score=92.21 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=38.6
Q ss_pred eEEEEEEc-------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 2 FYSILFYS-------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 2 ~v~v~F~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
+++|+||| +||++|+.+.|.++++++++++ .+.++++|+++.+
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~ 72 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRP 72 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcc
Confidence 78999999 9999999999999999999985 5888999887653
No 64
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.62 E-value=1.6e-15 Score=92.59 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=65.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|+||++||++|+++.|.++++.+.+ .+.++.++.+...+ ..+++++.. ..
T Consensus 26 k~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~------------------~~ 83 (127)
T cd03010 26 KPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPY------------------AA 83 (127)
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCC------------------ce
Confidence 37899999999999999999999998775 37788887654432 223333321 22
Q ss_pred EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+..+.+..+++.|++.+.|+.+++++++++ ...+.|..
T Consensus 84 ~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v-~~~~~G~~ 121 (127)
T cd03010 84 VGFDPDGRVGIDLGVYGVPETFLIDGDGII-RYKHVGPL 121 (127)
T ss_pred EEECCcchHHHhcCCCCCCeEEEECCCceE-EEEEeccC
Confidence 334567889999999999988888654443 24555543
No 65
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.62 E-value=1.5e-15 Score=93.15 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=62.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEe-
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAID- 78 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~- 78 (116)
.+++|+||++||++|+++.|.+.++.+++.+.+ .+.++.++.+.+.+..+++- ...|.. . ....
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~-~~~~~~----------~---~~~~~ 84 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYF-SKMPWL----------A---VPFSD 84 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HcCCee----------E---cccCC
Confidence 479999999999999999999999998887542 57777777766543222221 111100 0 1111
Q ss_pred ccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 79 CTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 79 ~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
.+.+..++++|+|.++|+++++++++++
T Consensus 85 ~~~~~~~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 85 RERRSRLNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1344678999999999999999755554
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.60 E-value=3.2e-15 Score=96.89 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=62.8
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|+||++||++|++++|.+.++.+. .+.++.++.+++.+.+ ++++.. +| .
T Consensus 69 k~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~-~~-----------------~ 125 (185)
T PRK15412 69 KPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNP-YA-----------------L 125 (185)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCC-Cc-----------------e
Confidence 3789999999999999999999988642 4677788766554322 333322 11 1
Q ss_pred EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+-.+.+..+.+.|++.+.|+.+++++.+++ ...+.|++
T Consensus 126 ~~~D~~~~~~~~~gv~~~P~t~vid~~G~i-~~~~~G~~ 163 (185)
T PRK15412 126 SLFDGDGMLGLDLGVYGAPETFLIDGNGII-RYRHAGDL 163 (185)
T ss_pred EEEcCCccHHHhcCCCcCCeEEEECCCceE-EEEEecCC
Confidence 122556778899999999999999655554 24455554
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.58 E-value=8.1e-15 Score=82.92 Aligned_cols=58 Identities=31% Similarity=0.434 Sum_probs=52.1
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
.+..||++||++|+.+.|.++++++.++. .+.+..+|.+++++++++++++++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 46679999999999999999999999875 68899999999998999999999999876
No 68
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.56 E-value=7.7e-15 Score=95.56 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+|+|+||++||++|+.+.|.++++++.++ .+.|+++|++.. +..|+++.+||+++|++|
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G 162 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNLPTILVYRNG 162 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCCCEEEEEECC
Confidence 68999999999999999999999999986 588999988754 577888888888888876
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=2e-14 Score=82.07 Aligned_cols=62 Identities=31% Similarity=0.516 Sum_probs=50.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+++|.||++||++|+.+.+.++++.+. .+ .+.++.+|++.+..+++++++.++||+++++++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG 73 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECC
Confidence 689999999999999999999999888 33 677888877777777777777777777766654
No 70
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=105.75 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=62.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-----cc-cccccCCccccceEEEcCceeeeceeeE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-----HG-PLCKEYDIKGYPTFHHLALTIMIIRLAL 74 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~-~~~~~~~v~~~Pt~~~~~~~v~f~~~~~ 74 (116)
.+|+|+|||+||++|++++|.++++.++++.. .+.++.+..+. +. ++.+.+....+| .
T Consensus 57 KpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~---------------~ 120 (521)
T PRK14018 57 KPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYP---------------K 120 (521)
T ss_pred CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCc---------------c
Confidence 47999999999999999999999999998754 46666665421 11 111111111111 1
Q ss_pred EEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 75 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
..+..+.+..+++.|+|+++||++++++++++
T Consensus 121 ~pV~~D~~~~lak~fgV~giPTt~IIDkdGkI 152 (521)
T PRK14018 121 LPVLTDNGGTLAQSLNISVYPSWAIIGKDGDV 152 (521)
T ss_pred cceeccccHHHHHHcCCCCcCeEEEEcCCCeE
Confidence 23455778899999999999999888554443
No 71
>KOG0912|consensus
Probab=99.55 E-value=8.7e-15 Score=99.43 Aligned_cols=79 Identities=22% Similarity=0.454 Sum_probs=67.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
.|+|.|||+||+.++.++|.+++.++.++.. .++ +++..+.|||+.
T Consensus 15 lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e------------~P~----------------------~kvvwg~VDcd~ 60 (375)
T KOG0912|consen 15 LVFVNFYADWCRFSQMLKPIFEEAAAKFKQE------------FPE----------------------GKVVWGKVDCDK 60 (375)
T ss_pred EEeeeeehhhchHHHHHhHHHHHHHHHHHHh------------CCC----------------------cceEEEEcccch
Confidence 5899999999999999999999999988752 111 357889999999
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+.+|+.+|.|..|||+-+|++|... ..+|.|+.
T Consensus 61 e~~ia~ky~I~KyPTlKvfrnG~~~-~rEYRg~R 93 (375)
T KOG0912|consen 61 EDDIADKYHINKYPTLKVFRNGEMM-KREYRGQR 93 (375)
T ss_pred hhHHhhhhccccCceeeeeeccchh-hhhhccch
Confidence 9999999999999999999999763 56898875
No 72
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=2.5e-14 Score=90.12 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+.+|+|||+||++|++++|.+++++++++ +.++.++.+.... ..+|.. ++.+
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~-------~~fp~~----------------~~~~- 103 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGL-------TGFPDP----------------LPAT- 103 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcc-------cccccc----------------cCCc-
Confidence 46899999999999999999999999883 4555555554321 122211 1111
Q ss_pred ccchhhhc---CCCCCCEEEEecCCc
Q psy3452 82 HGPLCKEY---DIKGYPTFQYFHYFN 104 (116)
Q Consensus 82 ~~~~~~~~---~v~~~Pt~~~~~~g~ 104 (116)
.....+.| ++.++||++++++.+
T Consensus 104 ~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 104 PEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred hHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 12223345 889999999996543
No 73
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.55 E-value=1.8e-14 Score=87.09 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
++++|+|||+||++|+.+.|.+.+....... ...++.++.+.+
T Consensus 20 kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~ 62 (117)
T cd02959 20 KPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDD 62 (117)
T ss_pred CcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCC
Confidence 4799999999999999999999987665543 223444444433
No 74
>PTZ00062 glutaredoxin; Provisional
Probab=99.55 E-value=6.8e-14 Score=91.71 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.++++|||+||++|+.+.|.+.++++.++ .+.|+.||.+ ++|.++||++||++|
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------cCcccceEEEEEECC
Confidence 47899999999999999999999999997 6999999877 999999999999998
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.54 E-value=3.7e-14 Score=102.35 Aligned_cols=76 Identities=33% Similarity=0.637 Sum_probs=55.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC 79 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~ 79 (116)
..++|+||++||++|+.+.|.++++++.+++.. .+.++++|++.+.
T Consensus 365 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------------------------------- 411 (462)
T TIGR01130 365 KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------------------------------- 411 (462)
T ss_pred CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc---------------------------------
Confidence 368999999999999999999999999998622 4555555554432
Q ss_pred cCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 80 TEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
+.. ++++++||+++|++|++..+..|.|..
T Consensus 412 -----~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~ 441 (462)
T TIGR01130 412 -----VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDR 441 (462)
T ss_pred -----cCC-CCccccCEEEEEeCCCCcCceEecCcC
Confidence 222 677777888777777665556676654
No 76
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.54 E-value=1.9e-14 Score=87.85 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=64.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-----cc----cccccCCccccceEEEcCceeeece
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-----HG----PLCKEYDIKGYPTFHHLALTIMIIR 71 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----~~----~~~~~~~v~~~Pt~~~~~~~v~f~~ 71 (116)
++++|+||++||++|.+.+|.++++.+++++. .+.++.++.++ .. +.++++++. +|
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~-~p------------- 88 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGIT-YP------------- 88 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCC-CC-------------
Confidence 47899999999999999999999999999875 47777776521 11 233454442 23
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+-.+.+..+.+.|+++++|+.+++++++++
T Consensus 89 -----~~~D~~~~~~~~~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 89 -----VANDNDYATWRAYGNQYWPALYLIDPTGNV 118 (126)
T ss_pred -----EEECCchHHHHHhCCCcCCeEEEECCCCcE
Confidence 222567789999999999999999665553
No 77
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.52 E-value=3.4e-14 Score=91.18 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=59.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|+||++||++|+++.|.++++.+. ++.++.++.++.. +.+++++.. +..
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~------------------f~~ 120 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNP------------------YQA 120 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCC------------------Cce
Confidence 3789999999999999999999887652 4777888765432 233343321 122
Q ss_pred EeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+..+.+..+.+.|++.++|+.+++++++++
T Consensus 121 v~~D~~~~~~~~~~v~~~P~~~~id~~G~i 150 (173)
T TIGR00385 121 ILIDPNGKLGLDLGVYGAPETFLVDGNGVI 150 (173)
T ss_pred EEECCCCchHHhcCCeeCCeEEEEcCCceE
Confidence 344667889999999999988888654443
No 78
>PHA02125 thioredoxin-like protein
Probab=99.51 E-value=3.8e-14 Score=79.27 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=44.0
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 61 (116)
++.||++||++|+.+.|.++++ .+.++++|.+++.+++++|+++++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--------~~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--------EYTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--------hheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 7899999999999999998754 2467889998999999999999999987
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.51 E-value=5.4e-14 Score=76.83 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=48.6
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
-+..|+++||++|+.+.+.++++++..+ ++.+..+|.++++++++++++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3678999999999999999999977653 58888999888888888888888888764
No 80
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.51 E-value=4.8e-14 Score=82.96 Aligned_cols=62 Identities=18% Similarity=0.366 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcCc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLAL 65 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~ 65 (116)
++++.|+++||++|..+.|.++++++++.+ ++.++.+|+++++.+++.+++. ++|++++++.
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 689999999999999999999999999987 6888888888877777777777 7777776665
No 81
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.50 E-value=7.5e-14 Score=84.95 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=34.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
.++|+|+++|||+|+.+.|.+.+++++. +..+..+|.+.++
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~ 65 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNG 65 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCcc
Confidence 4689999999999999999999999983 4677888877654
No 82
>KOG1731|consensus
Probab=99.49 E-value=1e-14 Score=105.77 Aligned_cols=64 Identities=34% Similarity=0.700 Sum_probs=57.3
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCC--CcccccccCCccccceEEEcCce
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCT--EHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.+|+||++|||+|++++|.++++++.+..-. .+.++.|||. .|..+|++++|..+||+.+|..+
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence 5788999999999999999999999997765 7888999986 46789999999999999988876
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.48 E-value=2.3e-13 Score=101.18 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=57.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
++|+|+|||+||++|+.+.+.. .++.+.++ ++.++++|.++++
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~------------------------------- 520 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANN------------------------------- 520 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCC-------------------------------
Confidence 4799999999999999998875 66777775 4778888877653
Q ss_pred eccCccchhhhcCCCCCCEEEEec-CCcccCCcCCCCC
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFH-YFNKQSPSPYHND 114 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~y~g~ 114 (116)
.++.++.++|++.++||+++|+ +|+.+....+.|.
T Consensus 521 --~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~ 556 (571)
T PRK00293 521 --AEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGF 556 (571)
T ss_pred --hhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCC
Confidence 1245678888888889888886 4444333455554
No 84
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.48 E-value=2.5e-13 Score=86.76 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=68.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|.||++||++|+...+.+.++.+++++. .+.++.++++..++. .+++++. + .
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~------------------~-~ 121 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLT------------------F-P 121 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCC------------------c-e
Confidence 36899999999999999999999999999875 478888888765432 2333321 1 1
Q ss_pred EeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
+-++.+.++.+.|++++.|+++++++++++. ..+.|.
T Consensus 122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~-~~~~g~ 158 (173)
T PRK03147 122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV-KVITGE 158 (173)
T ss_pred EEECCcchHHHHcCCCCcCeEEEECCCCcEE-EEEeCC
Confidence 2336678999999999999999997666542 334444
No 85
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.47 E-value=1.9e-13 Score=85.21 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=64.7
Q ss_pred CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
++++|.||++ ||++|++.+|.+.++.+.+++. .+.++.+..+.+.. .+++++.. +| +
T Consensus 29 k~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~-~~---------------~-- 89 (146)
T PF08534_consen 29 KPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGIN-FP---------------V-- 89 (146)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTT-SE---------------E--
T ss_pred CeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCC-ce---------------E--
Confidence 4689999999 9999999999999999998775 37777777666654 22332221 11 1
Q ss_pred EeccCccchhhhcCCC---------CCCEEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIK---------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~---------~~Pt~~~~~~g~~~ 106 (116)
-.+.+..+.++|++. ++|+++++++++++
T Consensus 90 -~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 90 -LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp -EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred -EechHHHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence 224788999999999 99999999776665
No 86
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.47 E-value=1.6e-13 Score=83.11 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=57.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
.+++|.||++||++|+.+.|.+.++.+.+ .+..+..|.+... ..++++++ .+| +
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~-~~~------------------~ 77 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGY-GFP------------------V 77 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCC-Ccc------------------E
Confidence 37899999999999999999999998774 3444444432222 33444443 122 2
Q ss_pred eccCccchhhhcCCCCCCEEEEecCCc
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
-.+.+.++++.|+|.+.|+++++++++
T Consensus 78 ~~d~~~~~~~~~~i~~~P~~~vid~~g 104 (123)
T cd03011 78 INDPDGVISARWGVSVTPAIVIVDPGG 104 (123)
T ss_pred EECCCcHHHHhCCCCcccEEEEEcCCC
Confidence 235667899999999999999998776
No 87
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.47 E-value=2.9e-13 Score=87.06 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=58.0
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHG 83 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~~~ 83 (116)
+|+||++||++|++++|.++++++++ .+.++.++.+...+ ..+|.+ ++ +...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~----g~~Vi~Vs~D~~~~-------~~fPv~----------------~d-d~~~ 124 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY----GFSVFPYTLDGQGD-------TAFPEA----------------LP-APPD 124 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc----CCEEEEEEeCCCCC-------CCCceE----------------ec-Cchh
Confidence 67899999999999999999999998 36777777664432 133422 11 1345
Q ss_pred chhhhcCC--CCCCEEEEecCCcccCCcCCCCC
Q psy3452 84 PLCKEYDI--KGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 84 ~~~~~~~v--~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
.+.+.|++ .++||.++++.++++....+-|.
T Consensus 125 ~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~ 157 (181)
T PRK13728 125 VMQTFFPNIPVATPTTFLVNVNTLEALPLLQGA 157 (181)
T ss_pred HHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECC
Confidence 57778985 79999999976666432234444
No 88
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.46 E-value=1.7e-13 Score=76.82 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=44.8
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
|.||++||++|+.+.|.+++++++++. .+.+.++| +.+.+.++++.++||+++ ++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i-~G 57 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV-DG 57 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE-CC
Confidence 789999999999999999999999876 57777776 233366788888888887 44
No 89
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.46 E-value=3.5e-13 Score=92.03 Aligned_cols=76 Identities=13% Similarity=0.277 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
.+++|+||++||++|+.+.|.+++++++++ +.++.++.+.... ..+| . ..
T Consensus 167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~-------~~fp------------~-------~~ 216 (271)
T TIGR02740 167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPL-------PGFP------------N-------AR 216 (271)
T ss_pred CeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCcc-------ccCC------------c-------cc
Confidence 368999999999999999999999999984 5666666655431 1122 1 12
Q ss_pred CccchhhhcCCCCCCEEEEecC-Cccc
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHY-FNKQ 106 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~-g~~~ 106 (116)
.+..++++++|+++||++++++ |+.+
T Consensus 217 ~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 217 PDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 3456788999999999999976 5554
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=1.9e-13 Score=107.33 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC---CCcc------cccccCCccccceEEEcCceeeece
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC---TEHG------PLCKEYDIKGYPTFHHLALTIMIIR 71 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~---~~~~------~~~~~~~v~~~Pt~~~~~~~v~f~~ 71 (116)
.+++|+|||+||++|+++.|.++++.+++++. .+.++.+.. +..+ ....++++. +|
T Consensus 421 K~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~-~p------------- 485 (1057)
T PLN02919 421 KVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNIS-HP------------- 485 (1057)
T ss_pred CEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCC-cc-------------
Confidence 47999999999999999999999999999875 477777743 2211 223344432 22
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+-.+.+..+.++|+|.++||++++++.+++
T Consensus 486 -----vv~D~~~~~~~~~~V~~iPt~ilid~~G~i 515 (1057)
T PLN02919 486 -----VVNDGDMYLWRELGVSSWPTFAVVSPNGKL 515 (1057)
T ss_pred -----EEECCchHHHHhcCCCccceEEEECCCCeE
Confidence 223567789999999999999999544443
No 91
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.44 E-value=5.7e-13 Score=78.75 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=63.8
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-cccc----ccCCccccceEEEcCceeeeceeeEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLC----KEYDIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~----~~~~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
+++++.||++||++|++..+.+.++.+.+... .+.++.++.+.+ .+.. ++++ .| +.
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~---~~---------------~~ 80 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYG---IT---------------FP 80 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcC---CC---------------cc
Confidence 47899999999999999999999999998633 688889888874 3222 2322 11 11
Q ss_pred EEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 76 AIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+-.+.+.++.+.|++.+.|+++++++++++
T Consensus 81 -~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v 110 (116)
T cd02966 81 -VLLDPDGELAKAYGVRGLPTTFLIDRDGRI 110 (116)
T ss_pred -eEEcCcchHHHhcCcCccceEEEECCCCcE
Confidence 112346789999999999999999765543
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.40 E-value=5.9e-13 Score=88.19 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=55.1
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCcee
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTI 67 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v 67 (116)
.++.||++||++|+.+.+.+++++...+ .+.+..+|.+++++++++++|.++||+++++++.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 4556999999999999999999988753 6888999999999999999999999999987753
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.38 E-value=1.7e-12 Score=79.07 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCK 50 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 50 (116)
++++|+|+++||+.|+.+.+.. .++.+.+.. ++.++++|.++.+++++
T Consensus 16 KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~ 66 (124)
T cd02955 16 KPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDK 66 (124)
T ss_pred CeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHH
Confidence 4799999999999999998743 366666655 68899999888776544
No 94
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.34 E-value=9.5e-12 Score=79.56 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=64.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------c----cccccCCccccceEEEcCceeee
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------G----PLCKEYDIKGYPTFHHLALTIMI 69 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~----~~~~~~~v~~~Pt~~~~~~~v~f 69 (116)
.+++++||++||+.|....+.+.++.+++++. ++.++.+..+.. . ...+++++. +|
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~-~~----------- 92 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP-FP----------- 92 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCC-ce-----------
Confidence 37899999999999999999999999999854 577888876542 1 122334332 22
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+-.+.+..+.+.|++...|+++++++++++
T Consensus 93 -------~l~D~~~~~~~~~~v~~~P~~~lid~~G~v 122 (171)
T cd02969 93 -------YLLDETQEVAKAYGAACTPDFFLFDPDGKL 122 (171)
T ss_pred -------EEECCchHHHHHcCCCcCCcEEEECCCCeE
Confidence 122456789999999999999999766654
No 95
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.34 E-value=3e-12 Score=83.31 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC 79 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~ 79 (116)
.+++|+||++||++|+++.|.+.++.+.... .+.++..|.. +..+.++++++.. | ...
T Consensus 75 k~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~-~-----------------~~~- 133 (189)
T TIGR02661 75 RPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGG-E-----------------RYV- 133 (189)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCc-c-----------------eee-
Confidence 3689999999999999999999998876532 3444432211 1123444544422 1 111
Q ss_pred cCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 80 TEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 80 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
.+.++.+.|++...|+.+++++++++
T Consensus 134 -~~~~i~~~y~v~~~P~~~lID~~G~I 159 (189)
T TIGR02661 134 -VSAEIGMAFQVGKIPYGVLLDQDGKI 159 (189)
T ss_pred -chhHHHHhccCCccceEEEECCCCeE
Confidence 24678899999999999999765553
No 96
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.33 E-value=8.7e-13 Score=78.69 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=52.4
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHH---HHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKA---AEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~---~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
.++++.||++||++|+++.+.+.+. .+.+.+ .+.++.++.+..........-.. +.. .
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~- 66 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFD--------------GQK--N- 66 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHT--------------CHS--S-
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccc--------------cch--h-
Confidence 3689999999999999999988854 344433 57778887776543221100000 000 0
Q ss_pred eccCccchhhhcCCCCCCEEEEec-CCcc
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFH-YFNK 105 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~ 105 (116)
-...+.++.+.++|+++||+++++ +|+.
T Consensus 67 ~~~~~~~l~~~~~v~gtPt~~~~d~~G~~ 95 (112)
T PF13098_consen 67 VRLSNKELAQRYGVNGTPTIVFLDKDGKI 95 (112)
T ss_dssp CHHHHHHHHHHTT--SSSEEEECTTTSCE
T ss_pred hhHHHHHHHHHcCCCccCEEEEEcCCCCE
Confidence 002455899999999999999996 4553
No 97
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.31 E-value=5e-12 Score=79.54 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
.+++|+||++||+ |++.+|.++++.+++++. .+.++.++++
T Consensus 23 k~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 23 KVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 4789999999999 999999999999999765 4788887654
No 98
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.31 E-value=5.6e-12 Score=81.42 Aligned_cols=92 Identities=5% Similarity=-0.032 Sum_probs=60.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEE------EEEeCCCcccccccC--------CccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVAL------AAIDCTEHGPLCKEY--------DIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~------~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~~ 66 (116)
++++|+|||+||++|+...|.++++.+. ++.+ ..+|.++.......| +. .+|
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~-~~P-------- 125 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK-ENP-------- 125 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcc-cCC--------
Confidence 4689999999999999999999999543 3444 677766643222222 22 223
Q ss_pred eeeceeeEEEEeccCccchhhhcCCCCCCEE-EEecCCcccCCcCCCCC
Q psy3452 67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPTF-QYFHYFNKQSPSPYHND 114 (116)
Q Consensus 67 v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~-~~~~~g~~~~~~~y~g~ 114 (116)
+..+-.+.+......|++.+.|+. +++++.+++ ...+.|.
T Consensus 126 -------~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkV-v~~~~G~ 166 (184)
T TIGR01626 126 -------WSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKV-KFVKEGA 166 (184)
T ss_pred -------cceEEECCcchHHHhcCCCCCCceEEEECCCCcE-EEEEeCC
Confidence 111222457778889999999888 788666654 2344443
No 99
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.28 E-value=1.1e-11 Score=74.94 Aligned_cols=86 Identities=20% Similarity=0.385 Sum_probs=67.1
Q ss_pred CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
++++|.||++ ||+.|+...+.+.++.++++.. ++.++.+..+...++ .++++. .+ .
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~-~~------------------~ 85 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGL-PF------------------P 85 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTC-SS------------------E
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhcc-cc------------------c
Confidence 4789999999 9999999999999999999865 588888888766533 333331 11 2
Q ss_pred EeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
+-.+.+.++++.|++. ..|+++++++++++
T Consensus 86 ~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 86 VLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp EEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBE
T ss_pred cccCcchHHHHHcCCccccCCceEeEEEEECCCCEE
Confidence 2235788999999999 99999999887764
No 100
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.27 E-value=1.9e-11 Score=70.44 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=52.1
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
-+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|+|.++||+++ ++.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi-dG~ 74 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL-NGE 74 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE-CCE
Confidence 4677999999999999999999998875 58999999999988999999999999964 443
No 101
>PLN02412 probable glutathione peroxidase
Probab=99.27 E-value=2.5e-11 Score=77.57 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
.+++|.||++||++|++.+|.+.++.+++++.+ +.++.++++
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~ 71 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCN 71 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEeccc
Confidence 478999999999999999999999999998764 888888764
No 102
>KOG0191|consensus
Probab=99.26 E-value=8.3e-12 Score=89.01 Aligned_cols=65 Identities=38% Similarity=0.719 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.++|.||+|||++|+.+.|.|+++++.+.....+.+..+|++....+++++++..+||+.+|.++
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~ 228 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPG 228 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCC
Confidence 47999999999999999999999999997544899999999999999999999999999999977
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.21 E-value=6.5e-11 Score=77.63 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
++++|.|||+||++|++.+|.++++.+++++.+ +.++.++++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~ 81 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTS 81 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecch
Confidence 478999999999999999999999999998764 788888763
No 104
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.21 E-value=2.3e-11 Score=68.99 Aligned_cols=61 Identities=30% Similarity=0.448 Sum_probs=44.5
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 64 (116)
++++|+|+++||++|+.+...+ .++.+.+.+ ++..+++|.++.....+. ...++|++++++
T Consensus 18 kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 18 KPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp SEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred CCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 4799999999999999998877 455554554 799999998766543321 114577777765
No 105
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.20 E-value=8.8e-11 Score=73.02 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAAID 78 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~ 78 (116)
++++.||++||+.|++.+|.+.++.+++.+. .+.++.+..+...... +++++ .+| +-
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~~~~~~~~~~~-~~p------------------~~ 85 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEKLEAFDKGKFL-PFP------------------VY 85 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHHHHHHHHhcCC-CCe------------------EE
Confidence 3455557999999999999999999999754 4788888877654432 22222 122 23
Q ss_pred ccCccchhhhcCCC-----------------------------CCCEEEEecCCccc
Q psy3452 79 CTEHGPLCKEYDIK-----------------------------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 79 ~~~~~~~~~~~~v~-----------------------------~~Pt~~~~~~g~~~ 106 (116)
.+.+..+.+.|++. ..|+.+++++++.+
T Consensus 86 ~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i 142 (149)
T cd02970 86 ADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTI 142 (149)
T ss_pred ECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeE
Confidence 35667788888874 79999999876664
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.18 E-value=4.9e-11 Score=79.90 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
.+++|.||++||++|.+..|.++++.+++++.+ +.++.++++
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d 141 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCN 141 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecc
Confidence 478999999999999999999999999998763 788888764
No 107
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.13 E-value=1.8e-10 Score=71.09 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=62.9
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|.|| +.||+.|....+.+.++.+.+.+. .+.++.+..+....+. +++++ .+|
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~-~~~------------------ 83 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGL-PFP------------------ 83 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC-Cce------------------
Confidence 36899999 689999999999999999999765 4777777766544332 23332 122
Q ss_pred EeccCccchhhhcCCCCC---------CEEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIKGY---------PTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~---------Pt~~~~~~g~~~ 106 (116)
+-.+.+..+.+.|++... |+++++++++++
T Consensus 84 ~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v 122 (140)
T cd03017 84 LLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKI 122 (140)
T ss_pred EEECCccHHHHHhCCccccccccCCcceeEEEECCCCEE
Confidence 223556789999999988 999999765554
No 108
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.12 E-value=4.6e-10 Score=68.73 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~ 43 (116)
++++|+|+++||++|+++...+ .++.+..+. ++..+.++.+
T Consensus 24 Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d 67 (130)
T cd02960 24 KPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHE 67 (130)
T ss_pred CeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEec
Confidence 4799999999999999998765 344555543 4666666654
No 109
>KOG2501|consensus
Probab=99.12 E-value=1e-10 Score=73.15 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=64.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCccc-ccccCCccccceEEEcCceeeeceeeEEEEe
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGP-LCKEYDIKGYPTFHHLALTIMIIRLALAAID 78 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~ 78 (116)
++|.++|.|.||++|+.+-|.+.++.+++++++ .+.++-|+.|.+.+ +...+.... +.=......
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~-------------~~W~~iPf~ 100 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH-------------GDWLAIPFG 100 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC-------------CCeEEecCC
Confidence 468899999999999999999999999998865 57777777665532 222222111 111223334
Q ss_pred ccCccchhhhcCCCCCCEEEEecCCc
Q psy3452 79 CTEHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 79 ~~~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
.+...++.++|.|.+.|++.+++..+
T Consensus 101 d~~~~~l~~ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 101 DDLIQKLSEKYEVKGIPALVILKPDG 126 (157)
T ss_pred CHHHHHHHHhcccCcCceeEEecCCC
Confidence 45677899999999999999995554
No 110
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.11 E-value=2.4e-10 Score=67.09 Aligned_cols=60 Identities=23% Similarity=0.420 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCC--ccccceEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYD--IKGYPTFHH 62 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~ 62 (116)
+++++.||++||++|+.+.|.+.++.+.+.. .+.+..++.. ..+.....++ +..+|++.+
T Consensus 33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~ 95 (127)
T COG0526 33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL 95 (127)
T ss_pred ceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEE
Confidence 3688999999999999999999999999986 5788888886 6677777777 677776653
No 111
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.10 E-value=4.8e-10 Score=71.62 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=61.7
Q ss_pred CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|+||++| |++|...+|.++++.+++. ++.++.++.+.. .+.++++++..+|
T Consensus 45 k~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~------------------ 103 (167)
T PRK00522 45 KRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVI------------------ 103 (167)
T ss_pred CEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCce------------------
Confidence 36899999999 9999999999999999884 477777777643 2344454443222
Q ss_pred Eecc-CccchhhhcCCCCCC---------EEEEecCCccc
Q psy3452 77 IDCT-EHGPLCKEYDIKGYP---------TFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~-~~~~~~~~~~v~~~P---------t~~~~~~g~~~ 106 (116)
+-.+ .+.++++.|++...| +.+++++++++
T Consensus 104 ~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I 143 (167)
T PRK00522 104 TLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKV 143 (167)
T ss_pred EeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeE
Confidence 2223 456899999998777 99999766554
No 112
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.10 E-value=2.1e-10 Score=72.20 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC 42 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~ 42 (116)
++++|.|||+||++|++.+|.+.++.+++++. .+.++.+++
T Consensus 23 k~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 23 KVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 36889999999999999999999999999876 478888875
No 113
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.08 E-value=4.6e-10 Score=71.98 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=63.0
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCC----ccccceEEEcCceeeecee
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYD----IKGYPTFHHLALTIMIIRL 72 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~----v~~~Pt~~~~~~~v~f~~~ 72 (116)
++++|.|| ++||+.|....+.+.++.+++.+. ++.++.++.+.... ..+... ....|
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~-------------- 94 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKIN-------------- 94 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcc--------------
Confidence 46899999 899999999999999999999765 47777777665432 222211 11211
Q ss_pred eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
..+-.+.+..+.+.|++. ..|+.+++++.+++
T Consensus 95 --f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I 132 (173)
T cd03015 95 --FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGII 132 (173)
T ss_pred --eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeE
Confidence 123346778899999986 67899999766554
No 114
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.06 E-value=1.1e-09 Score=67.91 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=60.1
Q ss_pred CeEEEEEEcCC-CHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSPG-CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
++++|.||++| |++|+..+|.+.++.++++ .+.++.++.+... +..+++++..+|
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~------------------ 85 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVT------------------ 85 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCce------------------
Confidence 47899999999 6999999999999999975 4788888876543 223343332322
Q ss_pred EeccC-ccchhhhcCCCC------CCEEEEecCCccc
Q psy3452 77 IDCTE-HGPLCKEYDIKG------YPTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~-~~~~~~~~~v~~------~Pt~~~~~~g~~~ 106 (116)
+-++. +..+++.|++.. .|+.+++++++++
T Consensus 86 ~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I 122 (143)
T cd03014 86 TLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKV 122 (143)
T ss_pred EeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeE
Confidence 11233 378888998863 6899999765554
No 115
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.04 E-value=1.1e-09 Score=57.67 Aligned_cols=58 Identities=31% Similarity=0.655 Sum_probs=39.1
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc---cCCccccceEEEcC
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK---EYDIKGYPTFHHLA 64 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~ 64 (116)
++.||++||++|.++.+.+.++ +.... .+.+..++++....... .+++..+|++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 4789999999999999999988 33333 57787877776654332 34444444444433
No 116
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.02 E-value=4.5e-10 Score=82.51 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHH---HHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYV---KAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
++|+++|||+||-.|+.+.+..- ++..+.+ ++...++|.++++
T Consensus 475 ~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~------------------------------- 520 (569)
T COG4232 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTAND------------------------------- 520 (569)
T ss_pred CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCC-------------------------------
Confidence 38999999999999999988653 2233333 6889999988775
Q ss_pred eccCccchhhhcCCCCCCEEEEecCCc
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
.++.++.++|++-+.|++++|+.++
T Consensus 521 --p~~~~lLk~~~~~G~P~~~ff~~~g 545 (569)
T COG4232 521 --PAITALLKRLGVFGVPTYLFFGPQG 545 (569)
T ss_pred --HHHHHHHHHcCCCCCCEEEEECCCC
Confidence 3455666777777777777776443
No 117
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.01 E-value=3.8e-09 Score=68.43 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=33.8
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
+++.+||+||++|++.+|.++++.+++++. .+.++.++++
T Consensus 44 vlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 44 IIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 445669999999999999999999999875 4888888764
No 118
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.99 E-value=1.8e-09 Score=70.22 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccC-CccccceEEEcCceeeeceeeEE
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEY-DIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
.+++|.|| ++||+.|...++.+.++.+++.+. .+.++.+..+...... +.. .... +.+
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~---------------l~f- 94 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGK---------------ITY- 94 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccC---------------cce-
Confidence 36899999 999999999999999999999765 4677777766543211 111 0111 111
Q ss_pred EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
.+-.+.+.++++.|++. ..|+.+++++.+++
T Consensus 95 pllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I 131 (187)
T TIGR03137 95 PMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVI 131 (187)
T ss_pred eEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEE
Confidence 22235678899999986 46999999765554
No 119
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.99 E-value=1.9e-09 Score=67.20 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=57.8
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
+++|.|| ++||+.|....|.++++.+++++. ++.++.++.+.... .+++++. .+| +
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~-~~~------------------~ 89 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDSPFSLRAWAEENGL-TFP------------------L 89 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHhcCC-Cce------------------E
Confidence 5677777 999999999999999999999765 47777777665432 2233332 122 1
Q ss_pred eccCc--cchhhhcCCCC------CCEEEEecCCccc
Q psy3452 78 DCTEH--GPLCKEYDIKG------YPTFQYFHYFNKQ 106 (116)
Q Consensus 78 ~~~~~--~~~~~~~~v~~------~Pt~~~~~~g~~~ 106 (116)
-.+.. ..+.+.|++.. .|+.+++++++++
T Consensus 90 ~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v 126 (149)
T cd03018 90 LSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGII 126 (149)
T ss_pred ecCCCchhHHHHHhCCccccCCCccceEEEECCCCEE
Confidence 12333 77888999873 2488888655544
No 120
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.98 E-value=2.8e-09 Score=65.69 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=60.3
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
.+++|.|| +.||+.|....|.+.++.++++.. .+.++.+..+....+ .++++-..+|
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~~~~~~~~~~~~~~~~~~------------------ 83 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDSPFSHKAWAEKEGGLNFP------------------ 83 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHhcccCCCce------------------
Confidence 36899999 789999999999999999999544 577777776644322 2232111111
Q ss_pred EeccCccchhhhcCCCCCC---------EEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIKGYP---------TFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~P---------t~~~~~~g~~~ 106 (116)
+-.+.+..+.+.+++...| +++++++++++
T Consensus 84 ~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i 122 (140)
T cd02971 84 LLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKI 122 (140)
T ss_pred EEECCChHHHHHcCCccccccccCceeEEEEEECCCCcE
Confidence 1125566888999988776 78888765554
No 121
>KOG0914|consensus
Probab=98.95 E-value=8.3e-10 Score=72.28 Aligned_cols=64 Identities=14% Similarity=0.320 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc------ccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK------GYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~------~~Pt~~~~~~~ 66 (116)
+|+|.|+|.|.+.|+...|.+.+++.+|... .+.|.++|....++.+++|+|. +.||+++|.+|
T Consensus 146 ~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 146 YWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred EEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence 6999999999999999999999999999876 6999999999999999999885 47777777765
No 122
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.95 E-value=3.9e-09 Score=69.40 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=61.7
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEEEcCceeeeceeeEE
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
+++.||++||+.|...++.+.++.+++++. ++.++.++++.... +.+++++. +. .
T Consensus 31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~----------------~~-f 92 (202)
T PRK13190 31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIK----------------IP-F 92 (202)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCC----------------ce-E
Confidence 344689999999999999999999999865 47778887775422 11233331 11 2
Q ss_pred EEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 76 AIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
.+-++.+.++++.|++. ..|+++++++++++
T Consensus 93 Pll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I 129 (202)
T PRK13190 93 PVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIV 129 (202)
T ss_pred EEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEE
Confidence 23446778999999984 58999999776665
No 123
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.92 E-value=3.8e-09 Score=66.38 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred CeEEEEEEcC-CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEEcCceeeeceeeEEE
Q psy3452 1 MFYSILFYSP-GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHHLALTIMIIRLALAA 76 (116)
Q Consensus 1 ~~v~v~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~~v~f~~~~~~~ 76 (116)
++++|.||++ ||+.|....+.+.++.+.+++. .+.++.++.+...++. +++++ .+| .
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~-~~~-----------------~ 91 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELL-NFT-----------------L 91 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCC-CCe-----------------E
Confidence 3689999976 6888999999999999999775 4778888776554332 23332 122 1
Q ss_pred EeccCccchhhhcCCCCC------------CEEEEecCCccc
Q psy3452 77 IDCTEHGPLCKEYDIKGY------------PTFQYFHYFNKQ 106 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~------------Pt~~~~~~g~~~ 106 (116)
+ ++...++.+.|++... |+.+++++++++
T Consensus 92 l-~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i 132 (154)
T PRK09437 92 L-SDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKI 132 (154)
T ss_pred E-ECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEE
Confidence 2 2455778889988654 677888655554
No 124
>PRK15000 peroxidase; Provisional
Probab=98.91 E-value=7.8e-09 Score=67.90 Aligned_cols=89 Identities=11% Similarity=0.027 Sum_probs=64.6
Q ss_pred CeEEEEEEc-CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---c----ccCCccccceEEEcCceeeecee
Q psy3452 1 MFYSILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---C----KEYDIKGYPTFHHLALTIMIIRL 72 (116)
Q Consensus 1 ~~v~v~F~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~----~~~~v~~~Pt~~~~~~~v~f~~~ 72 (116)
.++++.||+ .||+.|...++.+.+..+++++. ++.++.++++..... . ++.++..+|
T Consensus 35 k~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~-------------- 99 (200)
T PRK15000 35 KTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVK-------------- 99 (200)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccC--------------
Confidence 368999999 59999999999999999999866 477888887754321 1 112332211
Q ss_pred eEEEEeccCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 73 ALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
..+-++.+.++++.|++. ..|+.+++++.+++
T Consensus 100 --fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I 137 (200)
T PRK15000 100 --YAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIV 137 (200)
T ss_pred --ceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEE
Confidence 223446778999999997 79999999765554
No 125
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.90 E-value=1.8e-09 Score=66.77 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhccCc--ceEEEEEeCCC
Q psy3452 1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLKDNH--KVALAAIDCTE 44 (116)
Q Consensus 1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~ 44 (116)
.+++|.||++||++ |....+.+.++.+++++.+ ++.++.+..+.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 36899999999998 9999999999999997642 47788777654
No 126
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.90 E-value=5.2e-09 Score=62.77 Aligned_cols=42 Identities=7% Similarity=0.053 Sum_probs=31.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTE 44 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~ 44 (116)
++++|+|+++||++|+.+.... .++.+.++. +..+..+|.++
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~ 62 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDS 62 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCC
Confidence 4789999999999999997643 555666655 56666666653
No 127
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.83 E-value=1.7e-08 Score=65.66 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=63.4
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc---ccccC-CccccceEEEcCceeeeceeeEE
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP---LCKEY-DIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~-~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
+++++.|| ++||+.|...++.+.+..+++.+. .+.++.++.+.... .++.. .+.. +.+.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~---------------l~fp 95 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAK---------------IKYA 95 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccC---------------Ccee
Confidence 36889999 999999999999999999999765 47788887765433 22211 1111 2222
Q ss_pred EEeccCccchhhhcCC----CCC--CEEEEecCCccc
Q psy3452 76 AIDCTEHGPLCKEYDI----KGY--PTFQYFHYFNKQ 106 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v----~~~--Pt~~~~~~g~~~ 106 (116)
+-++.+..+++.|++ .+. |+.++++.+++|
T Consensus 96 -llsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I 131 (187)
T PRK10382 96 -MIGDPTGALTRNFDNMREDEGLADRATFVVDPQGII 131 (187)
T ss_pred -EEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEE
Confidence 234678999999998 356 999999766554
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.82 E-value=1.1e-08 Score=56.72 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.5
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccccc-----CCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE-----YDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~ 61 (116)
++.||++||++|+++.+.+.+. .+.+..+|.++++...+. ++...+|+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence 5679999999999999988764 244556676666544433 2566667653
No 129
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.78 E-value=2.5e-08 Score=66.21 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=63.0
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc--ccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC--KEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~--~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
+++.||++||+.|...++.+.++.+++.+. ++.++.++++...... .++ ++..- . ..+. ..+-++
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~-i~~~~-----~-----~~i~-fPil~D 98 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEW-IKDNT-----N-----IAIP-FPVIAD 98 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHh-HHHhc-----C-----CCCc-eeEEEC
Confidence 578999999999999999999999999766 4778888877643211 110 10000 0 0112 223346
Q ss_pred CccchhhhcCCC-------CCCEEEEecCCcccCCc
Q psy3452 81 EHGPLCKEYDIK-------GYPTFQYFHYFNKQSPS 109 (116)
Q Consensus 81 ~~~~~~~~~~v~-------~~Pt~~~~~~g~~~~~~ 109 (116)
.+.++++.|++. ..|+++++++.+++...
T Consensus 99 ~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 99 DLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred CCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 677899999973 68999999776665333
No 130
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.76 E-value=2e-08 Score=54.99 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=37.5
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~ 62 (116)
+..|+++||++|++..+.+++ . .+.+..+|.++++. +.+.+++.++|++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~---~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K---GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C---CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 457999999999999888765 1 47778888876653 334567777777765
No 131
>smart00594 UAS UAS domain.
Probab=98.73 E-value=5.1e-08 Score=59.24 Aligned_cols=64 Identities=6% Similarity=0.147 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
++++|+|+++||+.|..+...+ .++.+.++. ++.+..+|.+..+
T Consensus 28 K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e------------------------------- 74 (122)
T smart00594 28 RLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE------------------------------- 74 (122)
T ss_pred CCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh-------------------------------
Confidence 3689999999999999988654 555566654 5666666654332
Q ss_pred eccCccchhhhcCCCCCCEEEEec
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFH 101 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~ 101 (116)
..+++..|+++++|+++++.
T Consensus 75 ----g~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 75 ----GQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred ----HHHHHHhcCcCCCCEEEEEe
Confidence 24566677777777777773
No 132
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.73 E-value=4.1e-08 Score=64.61 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=59.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc-------ccCCccccceEEEcCceeeeceeeE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC-------KEYDIKGYPTFHHLALTIMIIRLAL 74 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-------~~~~v~~~Pt~~~~~~~v~f~~~~~ 74 (116)
++++.||++||+.|...++.+.++.+++++. ++.++.++++...... +..+ ..+ .
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~-~~~---------------~- 89 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTG-VEI---------------P- 89 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcC-CCC---------------c-
Confidence 3566899999999999999999999999765 4778888777643211 1111 111 1
Q ss_pred EEEeccCccchhhhcCCC----C----CCEEEEecCCccc
Q psy3452 75 AAIDCTEHGPLCKEYDIK----G----YPTFQYFHYFNKQ 106 (116)
Q Consensus 75 ~~v~~~~~~~~~~~~~v~----~----~Pt~~~~~~g~~~ 106 (116)
..+-++.+..+++.|++. + .|+.+++++++++
T Consensus 90 fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I 129 (203)
T cd03016 90 FPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKI 129 (203)
T ss_pred eeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeE
Confidence 223346678899999875 2 3568899766555
No 133
>PRK13189 peroxiredoxin; Provisional
Probab=98.72 E-value=7e-08 Score=64.36 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---ccc----CCccccceEEEcCceeeeceeeE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKE----YDIKGYPTFHHLALTIMIIRLAL 74 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~----~~v~~~Pt~~~~~~~v~f~~~~~ 74 (116)
.+++.||++||+.|....+.+.++.+++++. ++.++.++++..... ++. .+. . +.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~-~---------------i~- 99 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGV-E---------------IE- 99 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCc-C---------------cc-
Confidence 3456889999999999999999999999765 477788877754321 111 121 1 11
Q ss_pred EEEeccCccchhhhcCCC-------CCCEEEEecCCccc
Q psy3452 75 AAIDCTEHGPLCKEYDIK-------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 75 ~~v~~~~~~~~~~~~~v~-------~~Pt~~~~~~g~~~ 106 (116)
..+-++.+.++++.|++. ..|+++++++.+++
T Consensus 100 fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I 138 (222)
T PRK13189 100 FPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGII 138 (222)
T ss_pred eeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeE
Confidence 223346678899999975 56999999766665
No 134
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.72 E-value=2.8e-08 Score=56.10 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=37.2
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-----ccccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-----LCKEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~Pt~~ 61 (116)
++.|+++||++|+++.+.++++. .++ .+.+..++.+++.. +.+.+++..+|++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 46799999999999999999865 322 36677776654432 44445666666653
No 135
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.72 E-value=1.4e-08 Score=61.56 Aligned_cols=43 Identities=9% Similarity=0.235 Sum_probs=38.2
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.++.++++|++.+.+++++|+|+++||+++|++|+.+ .|.|..
T Consensus 64 ~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v---~~~G~~ 106 (120)
T cd03065 64 KGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVI---EYDGEF 106 (120)
T ss_pred CCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEE---EeeCCC
Confidence 4689999999999999999999999999999999753 388865
No 136
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.70 E-value=1.3e-07 Score=64.43 Aligned_cols=88 Identities=7% Similarity=0.055 Sum_probs=60.6
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc---cccc----cCCccccceEEEcCceeeeceee
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG---PLCK----EYDIKGYPTFHHLALTIMIIRLA 73 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~----~~~v~~~Pt~~~~~~~v~f~~~~ 73 (116)
++++.|| ++||+.|...++.+.+..+++.+.+ +.++.+..+... ..++ +.+... +.
T Consensus 100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~aw~~~~~~~~g~~~---------------l~ 163 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHKAWKELDVRQGGVSP---------------LK 163 (261)
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhhhhhccccC---------------cc
Confidence 4666666 9999999999999999999998764 777777776532 1111 111112 12
Q ss_pred EEEEeccCccchhhhcCCC-----CCCEEEEecCCccc
Q psy3452 74 LAAIDCTEHGPLCKEYDIK-----GYPTFQYFHYFNKQ 106 (116)
Q Consensus 74 ~~~v~~~~~~~~~~~~~v~-----~~Pt~~~~~~g~~~ 106 (116)
+ .+-++.+.++++.||+. ..|+.+++++++++
T Consensus 164 f-PlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I 200 (261)
T PTZ00137 164 F-PLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVV 200 (261)
T ss_pred e-EEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEE
Confidence 2 23335678899999985 58999999765554
No 137
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.67 E-value=2.6e-07 Score=68.97 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=82.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcC-ce----eee-------
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA-LT----IMI------- 69 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~~----v~f------- 69 (116)
+.++.|+.+.|..|.++...++++++.- + ++.+...|..++++++++|++...|++.+++ ++ +.|
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~ 444 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASLS-E--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH 444 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhcC-C--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence 3577888889999999999999988554 4 7888889988999999999999999999985 32 566
Q ss_pred -------------------------------------------------------------ceeeEEEEeccCccchhhh
Q psy3452 70 -------------------------------------------------------------IRLALAAIDCTEHGPLCKE 88 (116)
Q Consensus 70 -------------------------------------------------------------~~~~~~~v~~~~~~~~~~~ 88 (116)
+++..-.++....++++++
T Consensus 445 Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 524 (555)
T TIGR03143 445 ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDE 524 (555)
T ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHh
Confidence 4677777888899999999
Q ss_pred cCCCCCCEEEEe
Q psy3452 89 YDIKGYPTFQYF 100 (116)
Q Consensus 89 ~~v~~~Pt~~~~ 100 (116)
|+|.++|++++-
T Consensus 525 ~~v~~vP~~~i~ 536 (555)
T TIGR03143 525 YGIMSVPAIVVD 536 (555)
T ss_pred CCceecCEEEEC
Confidence 999999999974
No 138
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.64 E-value=1.1e-07 Score=63.07 Aligned_cols=73 Identities=15% Similarity=0.316 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+-|+.|+.+.|+.|..+.|.++.+++.+ .+.+..|+.|.... ..+| +...
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-------~~fp-------------------~~~~ 171 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-------PSFP-------------------NPRP 171 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-------cCCC-------------------CCCC
Confidence 4689999999999999999999999999 46777776664421 0111 1122
Q ss_pred ccchhhhcCCCCCCEEEEecCCc
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
+..++++++|..+|+++|++.+.
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCC
Confidence 66778888888888888885544
No 139
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.64 E-value=1.5e-07 Score=62.45 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=62.0
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cc----cCCccccceEEEcCceeeeceeeEE
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CK----EYDIKGYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~----~~~v~~~Pt~~~~~~~v~f~~~~~~ 75 (116)
+++.||++||+.|...++.+.+..+++.+. ++.++.++++..... ++ ..++ .+ . .
T Consensus 37 vLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~-~i---------------~-f 98 (215)
T PRK13191 37 VLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKV-EV---------------P-F 98 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCC-CC---------------c-e
Confidence 445889999999999999999999999766 477888887765431 11 1121 11 1 2
Q ss_pred EEeccCccchhhhcCCC-------CCCEEEEecCCcccC
Q psy3452 76 AIDCTEHGPLCKEYDIK-------GYPTFQYFHYFNKQS 107 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v~-------~~Pt~~~~~~g~~~~ 107 (116)
.+-++.+.++++.|++. ..|+.+++++++++.
T Consensus 99 PllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir 137 (215)
T PRK13191 99 PIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVR 137 (215)
T ss_pred EEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEE
Confidence 34456778999999973 469999997766653
No 140
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.59 E-value=7.9e-08 Score=59.02 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=38.1
Q ss_pred HHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 13 GYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 13 ~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+.+....-.++++++++++. .+.++++|.+++++++++|+|+++||+++|++|
T Consensus 49 ~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 49 PEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred CccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 44555566778888888642 477777777777777777777777777777775
No 141
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.52 E-value=2.2e-07 Score=57.07 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=39.6
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC---CccccceEEEcCc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY---DIKGYPTFHHLAL 65 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~ 65 (116)
-++-|..+|||-|+...|.+.++++..+ ++.+.-+..++++++..+| +..++|++++++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 4566889999999999999999999876 4677666677666655443 5567788777755
No 142
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.52 E-value=7.2e-07 Score=49.78 Aligned_cols=56 Identities=25% Similarity=0.557 Sum_probs=39.6
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeee
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMI 69 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f 69 (116)
++++|+.|.++...++++.+.++ +.+--+|....+++ .+|++.++|++ +.++.+.|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPal-vIng~~~~ 61 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPAL-VINGKVVF 61 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEE-EETTEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEE-EECCEEEE
Confidence 68889999999999999988883 44455555555555 88888888888 44554443
No 143
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.51 E-value=6.9e-07 Score=54.00 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=37.2
Q ss_pred eEEEEEEc-------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------cc--ccCCccccceEEEcCc
Q psy3452 2 FYSILFYS-------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LC--KEYDIKGYPTFHHLAL 65 (116)
Q Consensus 2 ~v~v~F~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~--~~~~v~~~Pt~~~~~~ 65 (116)
+++|.|++ +|||.|++..|.+++..+..++ +..++.+.+..-+. +- .+++++++||++-+++
T Consensus 21 ~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 21 PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTS
T ss_pred eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECC
Confidence 46777875 5999999999999998888666 56777666543221 11 1356666666665554
No 144
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.51 E-value=5.6e-07 Score=61.08 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=56.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
.-++.||.+.|+.|.++.|.++.+++.+ .+.+..|+.|.... ..+| +..-
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~-------p~fp-------------------~~~~ 201 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLI-------PGLP-------------------NSRS 201 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-------CCCC-------------------CccC
Confidence 4689999999999999999999999999 47777777765531 1112 1112
Q ss_pred ccchhhhcCCCCCCEEEEecCC-cccCCc
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYF-NKQSPS 109 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~ 109 (116)
+..++++++|..+|+++|++.+ ++..++
T Consensus 202 d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv 230 (256)
T TIGR02739 202 DSGQAQHLGVKYFPALYLVNPKSQKMSPL 230 (256)
T ss_pred ChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence 5567788888888888888555 343333
No 145
>KOG0913|consensus
Probab=98.51 E-value=1.7e-08 Score=66.72 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=56.0
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+|+.|+||||+.|+...|.|+..+.--.+- .+.++++|++.++.+.-+|-+...||+...++|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence 467899999999999999999988776654 699999999999999999999999999877765
No 146
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.6e-06 Score=54.41 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=58.5
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
++.++.|-++.|+.|.++...+ .++.+.+.+ ++.+..++.+......-.-| ...
T Consensus 43 Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g---------------------~ke 99 (182)
T COG2143 43 KYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVG---------------------DKE 99 (182)
T ss_pred cEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecC---------------------cee
Confidence 3678899999999999998765 455556665 68888888776543211111 112
Q ss_pred eccCccchhhhcCCCCCCEEEEecCC-ccc
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFHYF-NKQ 106 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 106 (116)
...+..++++.|+|++.||+++++.. +.+
T Consensus 100 e~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 100 EKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred eeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 23467799999999999999999554 443
No 147
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.48 E-value=8.1e-07 Score=58.25 Aligned_cols=94 Identities=7% Similarity=0.093 Sum_probs=61.5
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc-cCCccccceEEEcCceeeeceeeEEEEec
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK-EYDIKGYPTFHHLALTIMIIRLALAAIDC 79 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~ 79 (116)
+++|.|| ++||+.|....+.+.++.+++.+. ++.++.++++......+ .+..+.. ++ .+.+. ..+-.
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~-------~~--~~~~~-fpll~ 106 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKK-------GG--LGTMA-IPMLA 106 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhh-------CC--ccccc-cceEE
Confidence 6788999 588999999999999999999876 47888887775532111 0100000 00 00111 22334
Q ss_pred cCccchhhhcCCC------CCCEEEEecCCccc
Q psy3452 80 TEHGPLCKEYDIK------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 80 ~~~~~~~~~~~v~------~~Pt~~~~~~g~~~ 106 (116)
+.+.++++.|++. .+|+.+++++.+++
T Consensus 107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i 139 (199)
T PTZ00253 107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPKGML 139 (199)
T ss_pred CcHhHHHHHcCCcccCCCceEEEEEEECCCCEE
Confidence 6788999999985 46999999766553
No 148
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.46 E-value=3.3e-07 Score=58.14 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=42.6
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccC--------CccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEY--------DIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~~ 66 (116)
++++|.++++||..|..|.... .++++.++. ++.-+++|.++.+++.+.| +.-++|+.+|++++
T Consensus 38 KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 38 KPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp --EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred CcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence 4799999999999999987643 566777776 7888899999888877766 55567777776654
No 149
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.46 E-value=9.3e-07 Score=60.40 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeee
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMI 69 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f 69 (116)
.|+|.||-+.++.|..+...|..+++.|+ .+.|+++..+..+ +...|.....||+++|++|..+
T Consensus 148 ~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~ 211 (265)
T PF02114_consen 148 WVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLI 211 (265)
T ss_dssp EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEE
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccC-cccCCcccCCCEEEEEECCEEE
Confidence 58999999999999999999999999999 5999999988766 7889999999999999998443
No 150
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.44 E-value=8e-07 Score=60.05 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTE 81 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~ 81 (116)
+-+++||.+.|+.|.++.|.++.+++.+ .+.+..++.|.... ..+| +..-
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG~~~-------p~fp-------------------~~~~ 194 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSVIPVSVDGVIN-------PLLP-------------------DSRT 194 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-------CCCC-------------------CCcc
Confidence 4589999999999999999999999999 47777776664321 1111 1112
Q ss_pred ccchhhhcCCCCCCEEEEecCCc-ccCCcC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFN-KQSPSP 110 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~ 110 (116)
+...+++++|..+|+++|++.+. +..++.
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSVRPLS 224 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcEEEEe
Confidence 34455788888888888885543 433433
No 151
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.41 E-value=4.5e-07 Score=53.20 Aligned_cols=30 Identities=27% Similarity=0.680 Sum_probs=26.7
Q ss_pred EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 37 LAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 37 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
++++|++++++++++++|+++||+++|+++
T Consensus 54 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 54 VGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 047899999999999999999999999884
No 152
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.39 E-value=8.8e-07 Score=50.36 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=32.4
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
++.|+.+||++|.+....++++...+. .+.+..+|.+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCC
Confidence 567999999999999999999987654 577778877764
No 153
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.39 E-value=7.8e-07 Score=57.70 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=35.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
++++|.|||+||+.|.+ .+.++++.+++++. .+.++.+.|+
T Consensus 26 KvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n 66 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN 66 (183)
T ss_pred CEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence 47899999999999975 88999999999876 4888888775
No 154
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.30 E-value=1.1e-06 Score=52.78 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=35.6
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y 111 (116)
.+.+.++|.+++.+++++|+|++.||+++|++|+.+....-
T Consensus 46 ~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G 86 (114)
T cd02954 46 FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLG 86 (114)
T ss_pred ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcC
Confidence 46789999999999999999999999999999987644433
No 155
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.29 E-value=9.8e-07 Score=52.72 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=33.5
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.+.++.+|.+.+.+++.+|+|++.||+++|++|+.+
T Consensus 60 ~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 60 GRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred CcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEE
Confidence 3467899999999999999999999999999999765
No 156
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.28 E-value=7.7e-07 Score=54.68 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=33.8
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.++++|.+++.+++++|+|+++||+++|++|+.+
T Consensus 69 ~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred ceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 388999999999999999999999999999999765
No 157
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.25 E-value=1.9e-06 Score=50.98 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=45.9
Q ss_pred EcCCCHHHHhhhHHH-HHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~-~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
|.+.|..=......+ .++.+.+++.+.+.++++|++++++++++++++++||+++|++|
T Consensus 29 wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g 88 (108)
T cd02996 29 WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNG 88 (108)
T ss_pred CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCC
Confidence 667787666555444 45555554433799999999999999999999999999999875
No 158
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.24 E-value=2.6e-06 Score=46.33 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=34.0
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC----CccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY----DIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~ 62 (116)
++.|+++||++|.++...+++. .+.+..++.+.+....+.+ +...+|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5679999999999988877752 3566666666554333322 4566776654
No 159
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.23 E-value=9.7e-07 Score=51.25 Aligned_cols=43 Identities=30% Similarity=0.648 Sum_probs=37.7
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
++.++.+|++.+.+++++|+|+++||++++++|+.. ..|.|..
T Consensus 49 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~~~g~~ 91 (103)
T PF00085_consen 49 NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV--KRYNGPR 91 (103)
T ss_dssp TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE--EEEESSS
T ss_pred ccccchhhhhccchhhhccCCCCCCEEEEEECCcEE--EEEECCC
Confidence 578899999999999999999999999999999775 3676654
No 160
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.20 E-value=2.5e-06 Score=49.20 Aligned_cols=43 Identities=14% Similarity=0.405 Sum_probs=36.1
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.+.++.+|++.+.+++++|+|.++||+++|++|+.+ ..+.|..
T Consensus 44 ~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~--~~~~g~~ 86 (96)
T cd02956 44 QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV--DGFQGAQ 86 (96)
T ss_pred cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe--eeecCCC
Confidence 467899999999999999999999999999987654 4566654
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.20 E-value=4.7e-06 Score=44.20 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=33.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc----ccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC----KEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~ 61 (116)
++.|+.+||++|.+....+++. .+.+..+|++.+++.. +..+...+|++.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence 4679999999999999888542 4777777777664222 222555555554
No 162
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.12 E-value=5.8e-06 Score=47.17 Aligned_cols=55 Identities=29% Similarity=0.423 Sum_probs=37.1
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCc--cccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDI--KGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~ 61 (116)
++.|..+||++|.+....++++...+. .+.+..+|.+.+. ++.+..+- ..+|++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF 62 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE
Confidence 567899999999999999988765543 3666667766432 33344442 5667663
No 163
>KOG0910|consensus
Probab=98.11 E-value=3.1e-06 Score=52.82 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=35.2
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.+.++++|.+++.+++.+|+|+++||+++|++|+++
T Consensus 92 g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 92 GKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 6899999999999999999999999999999999875
No 164
>KOG3425|consensus
Probab=98.10 E-value=1.1e-05 Score=48.33 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred EEEEEEc--------CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 3 YSILFYS--------PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 3 v~v~F~a--------~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
++|.|++ ||||.|.+..|.+.+..+..+. .+.++.+++.+-+
T Consensus 28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRP 77 (128)
T ss_pred EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCC
Confidence 5677774 6999999999999998887766 7888888877654
No 165
>KOG0911|consensus
Probab=98.07 E-value=1e-06 Score=58.10 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
..++.||++||.+|..+...++.+++..+ ++.+++.+.++.++++..+.+..+|++.++..+
T Consensus 19 ~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 19 LLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 35788999999999999999999988883 799999999999999999999999999988665
No 166
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.05 E-value=6.5e-06 Score=48.26 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=35.4
Q ss_pred eeeEEEEecc-CccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 71 RLALAAIDCT-EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 71 ~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
++.+..+|.+ .+.+++++|+|+++||+++|++| . ...|.|..+
T Consensus 49 ~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~--~~~~~G~~~ 92 (100)
T cd02999 49 QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P--RVRYNGTRT 92 (100)
T ss_pred cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c--eeEecCCCC
Confidence 3556778887 78899999999999999999888 3 477888753
No 167
>KOG1672|consensus
Probab=98.03 E-value=1.4e-05 Score=51.77 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
-|++.||-+.-..|+-+...++.+++.+-+ ..|+++++...+-++.+++|+-.|++.+|.++
T Consensus 86 kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 86 KVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred eEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence 378999999999999999999999999884 78999999999999999999999999999998
No 168
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.02 E-value=1e-05 Score=47.13 Aligned_cols=19 Identities=42% Similarity=0.831 Sum_probs=15.5
Q ss_pred ccccCCccccceEEEcCce
Q psy3452 48 LCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 48 ~~~~~~v~~~Pt~~~~~~~ 66 (116)
++++++++++||+++++++
T Consensus 67 ~~~~~~i~~~Pt~~~~~~g 85 (104)
T cd02997 67 LKEEYNVKGFPTFKYFENG 85 (104)
T ss_pred HHHhCCCccccEEEEEeCC
Confidence 5678899999998888874
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.98 E-value=2e-05 Score=44.11 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=32.8
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccCCccccceE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEYDIKGYPTF 60 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~ 60 (116)
++.|+++||++|..+...++++.. .+.+..++.+.+. .+.+..+...+|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 467999999999999999987644 2445555554431 22333455556654
No 170
>KOG3414|consensus
Probab=97.97 E-value=4.2e-05 Score=46.33 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=56.5
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+.++|-|.-+|-+.|.++...+.++++.+.. -..+.-+|.++-+++.+-|++...||++||=++
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 3689999999999999999999999999987 567778889999999999999999999866544
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.94 E-value=2.3e-05 Score=43.89 Aligned_cols=34 Identities=26% Similarity=0.579 Sum_probs=25.6
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
++.|..+||++|.+....+++. .+.+..+|++++
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~ 43 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGND 43 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCC
Confidence 5679999999999999888742 355666666654
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.91 E-value=2.3e-05 Score=43.05 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccC---CccccceEE
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY---DIKGYPTFH 61 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~ 61 (116)
..|..++|+.|++....+++. .+.+..+|.++++...+.+ +...+|++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~ 53 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV 53 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEE
Confidence 468899999999999888741 4677777777665443322 555666553
No 173
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.90 E-value=1.3e-05 Score=47.16 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=32.5
Q ss_pred eeeEEEEeccCcc---chhhhcCCCCCCEEEEecCCcccCCcCCCC
Q psy3452 71 RLALAAIDCTEHG---PLCKEYDIKGYPTFQYFHYFNKQSPSPYHN 113 (116)
Q Consensus 71 ~~~~~~v~~~~~~---~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g 113 (116)
.+.++.+|.+.+. +++++|+|+++||+++|++|+.+ ..+.|
T Consensus 46 ~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v--~~~~G 89 (103)
T cd02985 46 DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI--HEEEG 89 (103)
T ss_pred CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE--EEEeC
Confidence 4677888887664 79999999999999999988764 44444
No 174
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.89 E-value=2.7e-05 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=34.6
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~ 115 (116)
.+.++.+|++...+++++|+|+++||+++|++|.. ..|.|..
T Consensus 50 ~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~---~~~~G~~ 91 (104)
T cd03000 50 PVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA---YNYRGPR 91 (104)
T ss_pred cEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc---eeecCCC
Confidence 46788899999999999999999999999976532 4577764
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.89 E-value=4.2e-05 Score=41.18 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=26.6
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
++.|.++||++|++....+++. .+.+..+|.+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~ 36 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDG 36 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCH
Confidence 4678999999999999888864 2556666766554
No 176
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.87 E-value=1.8e-05 Score=47.45 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=36.2
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
.+.+..+|.+.+.+++++|+|++.||++++++|++.....|.|-
T Consensus 53 ~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 53 KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 45678889899999999999999999999998766554566663
No 177
>PRK10996 thioredoxin 2; Provisional
Probab=97.87 E-value=2e-05 Score=48.93 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=35.6
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
.++.++.+|.+.+.+++++|+|.++||+++|++|+.+ ..+.|.
T Consensus 83 ~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v--~~~~G~ 125 (139)
T PRK10996 83 GKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV--DMLNGA 125 (139)
T ss_pred CCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE--EEEcCC
Confidence 4678899999999999999999999999999988764 344443
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.81 E-value=3.3e-05 Score=57.92 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
-|.+++|++|.+....+++++...+ ++..--+|....++++++|+|.++|++++
T Consensus 482 v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 482 IGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE
Confidence 4679999999999999999998876 58899999999999999999999999986
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.81 E-value=6.1e-05 Score=44.14 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~ 61 (116)
++.|..+|||+|.+....+++. .+.+..+|++++++ +.+..+...+|.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 4569999999999998877753 34444555554432 22333556777763
No 180
>PHA03050 glutaredoxin; Provisional
Probab=97.80 E-value=7.4e-05 Score=44.49 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-------ccccccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-------GPLCKEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~ 61 (116)
++.|..+|||+|++....+++..-..+ .+..+|.++. ..+.+..+.+.+|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence 567999999999999988876532221 2334444431 2344455666777774
No 181
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.80 E-value=4.4e-05 Score=43.94 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=32.3
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.++.+|++.+..++++|+|.++||++++++|+.+
T Consensus 46 ~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 46 KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 578899999999999999999999999999887653
No 182
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.79 E-value=3.6e-05 Score=42.93 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=31.0
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceE
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTF 60 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~ 60 (116)
..|+.+||+.|.+....+++. .+.+..+|++.++.. .+..+...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 568899999999999888752 355555566555432 222344556655
No 183
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.78 E-value=0.00037 Score=42.62 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=54.0
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEc-Cce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL-ALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~~ 66 (116)
+.++|-|..+|-+.|.++...+.++++..+. -..+..+|.++-+++.+.|.+...=|++|| ++.
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnk 85 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNK 85 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTE
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccCCCeEEEEEecCe
Confidence 4689999999999999999999999999987 678889999999999999999955556666 664
No 184
>PRK09381 trxA thioredoxin; Provisional
Probab=97.77 E-value=4.3e-05 Score=45.09 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=34.5
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
++.++.+|++.+..++++|+|+++||+++|++|+.+ ..+.|.
T Consensus 53 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~--~~~~G~ 94 (109)
T PRK09381 53 KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGA 94 (109)
T ss_pred CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE--EEecCC
Confidence 467899999999999999999999999999888653 344443
No 185
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.75 E-value=6.4e-05 Score=55.89 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=50.9
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
+--|.++.|++|......+++++...+ ++..-.+|....++++++|++.++|++++
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 556999999999999999999988765 68999999999999999999999999975
No 186
>PHA02278 thioredoxin-like protein
Probab=97.75 E-value=3.2e-05 Score=45.69 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=29.6
Q ss_pred eeEEEEeccCc----cchhhhcCCCCCCEEEEecCCccc
Q psy3452 72 LALAAIDCTEH----GPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 72 ~~~~~v~~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
..+..+|.+.+ .+++++|+|++.||+++|++|+.+
T Consensus 47 ~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 47 KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 45677887765 579999999999999999999765
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.75 E-value=8.2e-05 Score=40.90 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=26.5
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
++.|+.+||+.|.+....+++. .+.+..+|++.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~ 36 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDP 36 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCH
Confidence 4678999999999998888752 4666667776654
No 188
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.75 E-value=3.2e-05 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.2
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.+.++|++.+ +++++|+|+++||+++|++|+.+
T Consensus 55 ~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 55 ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEE
Confidence 567889999888 99999999999999999998764
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.74 E-value=9.3e-05 Score=40.69 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=33.8
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFH 61 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~ 61 (116)
++.|..+||+.|++....+++. .+.+..+|+++++. +.+..+...+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 4678899999999999888852 46677777776653 22333445556553
No 190
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.74 E-value=3.9e-05 Score=45.97 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=32.9
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.+.++|.+++.+++++|+|.+.||+++|++|+.+
T Consensus 53 ~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 53 ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 568899999999999999999999999999999754
No 191
>KOG0912|consensus
Probab=97.73 E-value=6.9e-05 Score=51.91 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 19 KPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
...-+++.+++++ +++.+++|||+.+..++.+|.|..+||+.+|++|
T Consensus 36 ~EAa~~~~~e~P~-~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 36 EEAAAKFKQEFPE-GKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred HHHHHHHHHhCCC-cceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence 3455677888887 4899999999999999999999999999999998
No 192
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.71 E-value=4.4e-05 Score=51.06 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=32.4
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
+.+.++.+|++++.+++++|+|+++||+++|++|+.
T Consensus 83 ~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~ 118 (224)
T PTZ00443 83 GQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKM 118 (224)
T ss_pred CCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEE
Confidence 347789999999999999999999999999998865
No 193
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.69 E-value=8.2e-05 Score=48.62 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-ccc--cc-ccCCccccc--eEE-EcCceeeeceeeE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGP--LC-KEYDIKGYP--TFH-HLALTIMIIRLAL 74 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~--~~-~~~~v~~~P--t~~-~~~~~v~f~~~~~ 74 (116)
..++.|..+.|++|+++.+.+.+ ..+.-.+.+..+.... ... .+ +-+.... | .+. ...++..-.....
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d-~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKD-RAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccC-HHHHHHHHHhCCCCCCCccc
Confidence 46788999999999999998876 1221134444333322 110 00 0000000 0 000 0000000000111
Q ss_pred EEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 75 AAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 75 ~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
...+...+.+++++++|++.||++ +++|..+
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~ 184 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRVV 184 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeEe
Confidence 222334777899999999999997 7677554
No 194
>PTZ00051 thioredoxin; Provisional
Probab=97.68 E-value=3.6e-05 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=32.0
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.+..+|++.+.+++++|+|+++||++++++|+.+
T Consensus 49 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 49 KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 467788999999999999999999999999988654
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.68 E-value=0.00016 Score=41.07 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=49.4
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe--CCCcc----cccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID--CTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd--~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
+..|+.+.|++|..+.+.++++.+..++ ++.+.... ..... ..+.+......- ........
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 67 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAA-----------QGKFEALH 67 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHH-----------cCcHHHHH
Confidence 4679999999999999999998866555 44544443 33321 100000000000 00000000
Q ss_pred eccCccchhhhcCCCCCCEEEEec
Q psy3452 78 DCTEHGPLCKEYDIKGYPTFQYFH 101 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~~~Pt~~~~~ 101 (116)
+..++.+.+++.|+.+.||+++.+
T Consensus 68 ~~l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 68 EALADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHHHcCCCCCCEEEECC
Confidence 111677899999999999999886
No 196
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.67 E-value=0.00016 Score=40.79 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=36.7
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc---ccCCccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC---KEYDIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~ 62 (116)
+..|..+||++|......+++ . .+.+-.+|.+++++.. ...+...+|+++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 456889999999998888864 1 5778888888766432 2345667887754
No 197
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.67 E-value=5.5e-05 Score=43.55 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=32.4
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
..+.+..+|++...+++++|+|+++||+++|++|+.+
T Consensus 45 ~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 45 PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 3578889999999999999999999999999887653
No 198
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.67 E-value=4.2e-05 Score=48.24 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=33.0
Q ss_pred eeeEEEEeccCccchhhhcCCCC------CCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKG------YPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~------~Pt~~~~~~g~~~ 106 (116)
++.++++|++++.+++++|+|++ +||+++|++|+.+
T Consensus 80 ~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 80 NLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 47889999999999999999988 9999999998765
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=6.6e-05 Score=51.75 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=35.3
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.+..++|||+.+..++..|+|++.||+++|.+|.-+
T Consensus 74 G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV 110 (304)
T COG3118 74 GKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV 110 (304)
T ss_pred CceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc
Confidence 7899999999999999999999999999999999876
No 200
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.66 E-value=5.5e-05 Score=43.84 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.9
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.+..+|.+++.++.++++|.++||++++++|+.+
T Consensus 45 ~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 45 AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 467788999999999999999999999999887654
No 201
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.66 E-value=5.8e-05 Score=42.29 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=32.6
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
+++.++.++++.+.++++++++.++||++++++|+.
T Consensus 40 ~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 40 PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred CCceEEEEECCCChhHHHhcCcccccEEEEEECCEE
Confidence 467889999999999999999999999999988864
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.66 E-value=0.00077 Score=50.21 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=63.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee--------
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI-------- 69 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f-------- 69 (116)
+|-+.++.+.|..|.++...++++++.-+ ++.+...+.. ...|++.+++++ +.|
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 34455556689999999999999888764 5665432211 347999888753 555
Q ss_pred ------------------------------------------------------------ceeeEEEEeccCccchhhhc
Q psy3452 70 ------------------------------------------------------------IRLALAAIDCTEHGPLCKEY 89 (116)
Q Consensus 70 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~~ 89 (116)
+++....+|....++++.+|
T Consensus 86 f~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 86 FTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence 67888888989999999999
Q ss_pred CCCCCCEEEE
Q psy3452 90 DIKGYPTFQY 99 (116)
Q Consensus 90 ~v~~~Pt~~~ 99 (116)
+|.++|++++
T Consensus 166 ~v~~VP~~~i 175 (517)
T PRK15317 166 NIMAVPTVFL 175 (517)
T ss_pred CCcccCEEEE
Confidence 9999999986
No 203
>KOG4277|consensus
Probab=97.65 E-value=4.2e-05 Score=53.02 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=37.1
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+.++++||...+.++.+|+|++|||+.+++++-- ..|.|..+
T Consensus 79 ikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a---~dYRG~R~ 120 (468)
T KOG4277|consen 79 IKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA---IDYRGGRE 120 (468)
T ss_pred eeecccccccchhhHhhhccCCCceEEEecCCee---eecCCCcc
Confidence 7889999999999999999999999999988744 78888653
No 204
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.63 E-value=0.0002 Score=39.16 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=25.8
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
++.|..+||+.|.+....+++. .+.+..+|.+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~ 37 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDI 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCCh
Confidence 5678999999999998887742 4566666666544
No 205
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.56 E-value=1.3e-05 Score=51.68 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=25.9
Q ss_pred EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeC
Q psy3452 6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDC 42 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~ 42 (116)
.|.-|.|+.|-...|.+.++..+++. .+.+-.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEc
Confidence 58899999999999999999999988 555554433
No 206
>KOG0907|consensus
Probab=97.56 E-value=5.6e-05 Score=44.87 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=33.4
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
.++.+.++|.++..+++++++|+..||++++++|+++
T Consensus 51 ~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 51 PDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred CCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE
Confidence 3588999999999999999999999999999999764
No 207
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.56 E-value=7.5e-05 Score=43.47 Aligned_cols=28 Identities=21% Similarity=0.628 Sum_probs=25.5
Q ss_pred EEeCCCcccccccCCccccceEEEcCce
Q psy3452 39 AIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 39 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
++|+++++.++++++++++||+++|++|
T Consensus 55 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 55 AVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred EEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 5788999999999999999999999875
No 208
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00048 Score=43.62 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=62.9
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc---ccccccCCccccceEEEcCceeeeceeeEEEE
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH---GPLCKEYDIKGYPTFHHLALTIMIIRLALAAI 77 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v 77 (116)
+|+++|| ..+++-|...+-.+++...+++.. +..++.|..+.. +.+++++++. +| +
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~-f~------------------L 91 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLT-FP------------------L 91 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCC-ce------------------e
Confidence 5788888 889999999999999998888876 477777776654 5667776654 22 2
Q ss_pred eccCccchhhhcCCC------------CCCEEEEecCCccc
Q psy3452 78 DCTEHGPLCKEYDIK------------GYPTFQYFHYFNKQ 106 (116)
Q Consensus 78 ~~~~~~~~~~~~~v~------------~~Pt~~~~~~g~~~ 106 (116)
-.+.+.++++.|+|- .-++.++++++++|
T Consensus 92 LSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I 132 (157)
T COG1225 92 LSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKI 132 (157)
T ss_pred eECCcHHHHHHhCcccccccCccccccccceEEEECCCCeE
Confidence 236778899999983 34778888776554
No 209
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.51 E-value=0.00014 Score=42.62 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.5
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.+..++.+ +.+++++|+|+++||+++|++|+.+
T Consensus 51 ~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 51 LHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 567888888 7789999999999999999988654
No 210
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.47 E-value=0.00011 Score=44.11 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EeCCCccccc-ccCCccccceEEEcCce
Q psy3452 40 IDCTEHGPLC-KEYDIKGYPTFHHLALT 66 (116)
Q Consensus 40 vd~~~~~~~~-~~~~v~~~Pt~~~~~~~ 66 (116)
+|++++.+++ ++|+|+++||+++|+++
T Consensus 67 Vd~d~~~~l~~~~~~I~~~PTl~lf~~g 94 (113)
T cd03006 67 INCWWPQGKCRKQKHFFYFPVIHLYYRS 94 (113)
T ss_pred EECCCChHHHHHhcCCcccCEEEEEECC
Confidence 4889999898 58999999999999875
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.45 E-value=0.0017 Score=41.43 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee------------------------
Q psy3452 18 AKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI------------------------ 69 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f------------------------ 69 (116)
....+.++++.+.+ .+.++.+. +.++++++++.. |++++++++ +.|
T Consensus 8 ~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~ 81 (184)
T PF13848_consen 8 LFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPE 81 (184)
T ss_dssp HHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEE
T ss_pred HHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccc
Confidence 45678899999987 57777775 566788899988 999988873 111
Q ss_pred --------------------------------------------ceeeEEEEeccCccchhhhcCCC--CCCEEEEec
Q psy3452 70 --------------------------------------------IRLALAAIDCTEHGPLCKEYDIK--GYPTFQYFH 101 (116)
Q Consensus 70 --------------------------------------------~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~ 101 (116)
+.+.++-+|+.....+.+.++++ ..|++++++
T Consensus 82 ~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 82 LTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp ESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred cchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 56899999999888999999998 999999996
No 212
>PRK10638 glutaredoxin 3; Provisional
Probab=97.45 E-value=0.00039 Score=39.18 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=34.3
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF 60 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~ 60 (116)
|.-++.|..+||++|.+....+++. .+.+..+|++.+++ +.+..+...+|++
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 4456778899999999999888852 35566667665542 2233344556655
No 213
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.40 E-value=0.00019 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAE 27 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~ 27 (116)
.+++.|.-+.||+|+++.+.+.++.+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhc
Confidence 46788999999999999999887643
No 214
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.39 E-value=0.00037 Score=51.85 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
+--|.++.|++|......+.+++...+ ++..-.+|....++++.+|++.++|++++
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 556899999999999999999888876 68888899999999999999999999985
No 215
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.37 E-value=0.003 Score=47.07 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=62.9
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce----eee---------
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT----IMI--------- 69 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~----v~f--------- 69 (116)
|-+.++.+.|..|.++...++++++.-+ ++.+...+.+. ...|++.+++++ +.|
T Consensus 21 v~~~~~~~~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 87 (515)
T TIGR03140 21 VTLVLSAGSHEKSKELLELLDEIASLSD---KISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHEF 87 (515)
T ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhCC---CeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHHH
Confidence 4444455579999999999999887764 56664433221 345898887654 555
Q ss_pred -----------------------------------------------------------ceeeEEEEeccCccchhhhcC
Q psy3452 70 -----------------------------------------------------------IRLALAAIDCTEHGPLCKEYD 90 (116)
Q Consensus 70 -----------------------------------------------------------~~~~~~~v~~~~~~~~~~~~~ 90 (116)
+++....+|....++++.+|+
T Consensus 88 ~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~ 167 (515)
T TIGR03140 88 TSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALG 167 (515)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcC
Confidence 577777788889999999999
Q ss_pred CCCCCEEEEe
Q psy3452 91 IKGYPTFQYF 100 (116)
Q Consensus 91 v~~~Pt~~~~ 100 (116)
+.++|++++-
T Consensus 168 v~~VP~~~i~ 177 (515)
T TIGR03140 168 IQGVPAVFLN 177 (515)
T ss_pred CcccCEEEEC
Confidence 9999999873
No 216
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.34 E-value=0.00023 Score=41.33 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=33.7
Q ss_pred EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
++.+|++.+..++++|+|+++||++++++|+. ..|.|..+
T Consensus 52 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~---~~~~G~~~ 91 (101)
T cd02994 52 VAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF---RRYQGPRD 91 (101)
T ss_pred EEEEEccCCHhHHHHcCCcccCEEEEeCCCCE---EEecCCCC
Confidence 46889999999999999999999999988752 57888653
No 217
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00067 Score=38.17 Aligned_cols=51 Identities=25% Similarity=0.491 Sum_probs=32.2
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-----cccccC-CccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-----PLCKEY-DIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~ 62 (116)
++.|..++||+|++....+++. .+.+..++.+... +..++- +.+.+|.+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 4568899999999998888732 4555555555444 222233 5566666653
No 218
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.33 E-value=0.00028 Score=45.48 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=32.2
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.+.+.+++++.. .++.+|+|.+.||+++|++|+.+
T Consensus 113 ~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 113 PAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred CCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE
Confidence 6789999998876 89999999999999999999754
No 219
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.33 E-value=0.00055 Score=38.53 Aligned_cols=54 Identities=28% Similarity=0.513 Sum_probs=43.8
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
++.|..+.|+-|..+...++++.... .+.+..+|.++++++.++|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 67899999999999998888765444 588999999999999999995 6886654
No 220
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.31 E-value=0.00069 Score=40.83 Aligned_cols=58 Identities=12% Similarity=0.325 Sum_probs=35.4
Q ss_pred CeEEEEEEcC----CCHHHHhhh--HHHHHHHHHhccCcceEEEEEeCCCcc--cccccCCccccceEEEc
Q psy3452 1 MFYSILFYSP----GCGYCKKAK--PEYVKAAEVLKDNHKVALAAIDCTEHG--PLCKEYDIKGYPTFHHL 63 (116)
Q Consensus 1 ~~v~v~F~a~----wC~~C~~~~--~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~ 63 (116)
++++|+++++ ||..|+... |.+.+ -++. ++.+...|++..+ +++..++++++|++.++
T Consensus 18 K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 18 RFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred CEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 4689999999 889997664 33333 3333 5677777665443 34444555555555444
No 221
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.30 E-value=0.0004 Score=41.70 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=32.3
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+.++.+|.++.+++++.|+|++.||+++|++|+.+
T Consensus 47 ~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 47 ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred eEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 78899999999999999999999999999998754
No 222
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.29 E-value=0.00029 Score=40.77 Aligned_cols=28 Identities=39% Similarity=0.926 Sum_probs=25.1
Q ss_pred EEeCCCcccccccCCccccceEEEcCce
Q psy3452 39 AIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 39 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
++|++++..++++++++++||+++++++
T Consensus 56 ~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 83 (102)
T cd03005 56 KVDCTQHRELCSEFQVRGYPTLLLFKDG 83 (102)
T ss_pred EEECCCChhhHhhcCCCcCCEEEEEeCC
Confidence 3688999999999999999999999875
No 223
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.29 E-value=0.00019 Score=42.71 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=32.0
Q ss_pred EEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCC
Q psy3452 74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 74 ~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
++.+|++++..++++++|+++||+++|++|+.+ ..+.|.
T Consensus 60 ~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~--~~~~G~ 98 (111)
T cd02963 60 IATVNAGHERRLARKLGAHSVPAIVGIINGQVT--FYHDSS 98 (111)
T ss_pred EEEEeccccHHHHHHcCCccCCEEEEEECCEEE--EEecCC
Confidence 478899999999999999999999999988653 344554
No 224
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.18 E-value=0.0063 Score=36.90 Aligned_cols=45 Identities=29% Similarity=0.511 Sum_probs=29.5
Q ss_pred eeeEEEEecc-----CccchhhhcCC--CCCCEEEEecCCcccCCcCC--CCCCC
Q psy3452 71 RLALAAIDCT-----EHGPLCKEYDI--KGYPTFQYFHYFNKQSPSPY--HNDYT 116 (116)
Q Consensus 71 ~~~~~~v~~~-----~~~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~y--~g~~~ 116 (116)
++.++.|... .|.+++++|++ ..+|.+.||. |+...++.| .|+.|
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~-~~~~~pv~~p~~~~~t 107 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFV-GDKEEPVRYPFDGDVT 107 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEE-SSTTSEEEE-TCS-S-
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEec-CCCCCCccCCccCCcc
Confidence 4555555322 67889999999 6789999998 444468877 77654
No 225
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.15 E-value=0.0021 Score=40.60 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=55.7
Q ss_pred eEEEEEEcCCCHHHHhh-hHHHHHHHHHhccCcce-EEEEEeCCCc---ccccccCCcc-ccceEEEcCceeeeceeeEE
Q psy3452 2 FYSILFYSPGCGYCKKA-KPEYVKAAEVLKDNHKV-ALAAIDCTEH---GPLCKEYDIK-GYPTFHHLALTIMIIRLALA 75 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~-~~~~~~~~~~~~~~~~~-~~~~vd~~~~---~~~~~~~~v~-~~Pt~~~~~~~v~f~~~~~~ 75 (116)
.+++.|.+.||+.|... .+.+.+..+++...+ + .++.+..+.. .+.++++++. .+
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~~~~~~~~~~~~~~~f------------------ 92 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPFVMKAWGKALGAKDKI------------------ 92 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHHHHHHHHHhhCCCCcE------------------
Confidence 45566669999999998 999999999987654 4 4666666544 3345555441 22
Q ss_pred EEeccCccchhhhcCCC-----------CCCEEEEecCC
Q psy3452 76 AIDCTEHGPLCKEYDIK-----------GYPTFQYFHYF 103 (116)
Q Consensus 76 ~v~~~~~~~~~~~~~v~-----------~~Pt~~~~~~g 103 (116)
.+-.+.+.++++.||+. ...+.+++++|
T Consensus 93 ~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g 131 (155)
T cd03013 93 RFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDG 131 (155)
T ss_pred EEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCC
Confidence 23345678899999873 13566777754
No 226
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.15 E-value=0.0013 Score=37.71 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=27.4
Q ss_pred CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceE
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTF 60 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~ 60 (116)
+||++|.+....+++. .+.+..+|.+++.++ .+..+...+|.+
T Consensus 21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 7999999998888764 355666666555432 223344556655
No 227
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.15 E-value=0.0011 Score=48.09 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=39.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccc------------cCCccccceEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCK------------EYDIKGYPTFHH 62 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~------------~~~v~~~Pt~~~ 62 (116)
|..++.|..+|||+|.+....+++. .+.+..+|+++++...+ +.+.+.+|++.+
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5557789999999999998888762 46777788876653221 246678898865
No 228
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.14 E-value=0.0016 Score=40.18 Aligned_cols=29 Identities=34% Similarity=0.616 Sum_probs=25.7
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
++++.|+.++|++|+++.|.+.++...++
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 57889999999999999999999877764
No 229
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.14 E-value=0.0013 Score=38.35 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc----cccCCccccceEE
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL----CKEYDIKGYPTFH 61 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~ 61 (116)
+|||+|.+....+++. ++.+..+|.+++++. .+..+...+|.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 8999999998888763 456667777655432 2233444556553
No 230
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.04 E-value=0.0027 Score=40.45 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=53.2
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcC
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLA 64 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~ 64 (116)
+++.|.........++...++++++.+.+ ++.++.+|++..+.+++.+++. ..|++++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 67777777788888999999999999987 7999999999989999999998 899999877
No 231
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.04 E-value=0.00064 Score=38.70 Aligned_cols=53 Identities=26% Similarity=0.559 Sum_probs=41.0
Q ss_pred EcCCCHHHHhhhHHHHHHH---HHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEYVKAA---EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~---~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
|.++|..-......+.+.. ..+ .++.+|++++..++++++++.+||+++++++
T Consensus 26 ~C~~C~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 26 WCGHCKALAPEYEKLAKELKGDGKV------VVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred CCHHHHhhhHHHHHHHHHhccCCce------EEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5677877776665554444 334 4688899999999999999999999998875
No 232
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.00 E-value=0.00071 Score=39.16 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=24.8
Q ss_pred EeCCCcccccccCCccccceEEEcCce
Q psy3452 40 IDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 40 vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+|++++++++++++++++||+++++++
T Consensus 56 id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 56 VDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EECcchHHHHHHCCCCccCEEEEECCC
Confidence 588899999999999999999999875
No 233
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.93 E-value=0.0015 Score=37.88 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred ceeeEEEEeccCccchhhhcCCC--CCCEEEEecC--Ccc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIK--GYPTFQYFHY--FNK 105 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~ 105 (116)
+.+.++.+|++++..+++.|++. ++|+++++++ |++
T Consensus 43 ~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 43 GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence 46889999999999999999999 9999999988 544
No 234
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.89 E-value=0.00097 Score=39.07 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=16.9
Q ss_pred ccccCCccccceEEEcCce
Q psy3452 48 LCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 48 ~~~~~~v~~~Pt~~~~~~~ 66 (116)
++++++++++||+++|+++
T Consensus 66 ~~~~~~i~~~Pt~~~~~~~ 84 (109)
T cd03002 66 LCGKYGVQGFPTLKVFRPP 84 (109)
T ss_pred HHHHcCCCcCCEEEEEeCC
Confidence 5788999999999999875
No 235
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.86 E-value=0.0048 Score=36.51 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=43.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCcc-ccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIK-GYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~-~~Pt~~~~~~~ 66 (116)
+++|+=.++.|+-.......+++..+..++ .+.+.-+|+-+.. .++++++|+ ..|.++++++|
T Consensus 21 ~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g 88 (105)
T PF11009_consen 21 PVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNG 88 (105)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETT
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECC
Confidence 567777799999999999999999888876 4888888887765 456677776 57777777764
No 236
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.76 E-value=0.0013 Score=37.78 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=27.3
Q ss_pred EEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 37 LAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 37 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
++.+|++++..+++++++.++|++++++++
T Consensus 50 ~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 50 LAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred EEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 468899999999999999999999999875
No 237
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.73 E-value=0.00084 Score=39.87 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=23.3
Q ss_pred eEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 73 ALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
..+-+.-..+.++..+|++..+|+++++++|+.
T Consensus 62 ~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 62 RGAVVARAAERALAARFGVRRWPALVFFRDGRY 94 (107)
T ss_dssp EEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEE
T ss_pred ceEEECchhHHHHHHHhCCccCCeEEEEECCEE
Confidence 334445567778888888888888888888754
No 238
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.68 E-value=0.0021 Score=37.15 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=35.6
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC-cccccccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-HGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
|.+.|..=......+.+..+....-.- +.+|++. ++.++++++++++|++++|+++
T Consensus 29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~---~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 29 WCGHCKNLAPEYEKLAAVFANEDDVVI---AKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred CCHHHHhhChHHHHHHHHhCCCCCEEE---EEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 455665544444444333321111112 3578888 8999999999999999998864
No 239
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.68 E-value=0.011 Score=36.84 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
++++.|....|++|.++.+.+.++.+++-+.+.+.+......
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 578999999999999999999999999833336777777653
No 240
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.61 E-value=0.012 Score=32.36 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 61 (116)
+.+..|-+...+...+....+.++.+.+-+ +...+--+|..+++++++.+++-.+||++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 456667777778999988999999888763 37889999999999999999999999986
No 241
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.60 E-value=0.0033 Score=39.26 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=29.2
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEE-EecCCc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQ-YFHYFN 104 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~-~~~~g~ 104 (116)
.+.+.++|.++++++++.|+|++.||++ +|++|+
T Consensus 55 ~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 55 FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 4677999999999999999999776666 888887
No 242
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.54 E-value=0.0051 Score=39.06 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID 41 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd 41 (116)
+.++.|+...||+|+.+.+.+.++.+++++ .+.+....
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~ 54 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP 54 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence 578999999999999999999999998866 45544333
No 243
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.41 E-value=0.0046 Score=38.47 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=24.9
Q ss_pred eeEEEEecc--CccchhhhcCCCCCCEEEEec-CCcc
Q psy3452 72 LALAAIDCT--EHGPLCKEYDIKGYPTFQYFH-YFNK 105 (116)
Q Consensus 72 ~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~-~g~~ 105 (116)
+.+..++.+ ...+++++|+|+++||+++|+ +|+.
T Consensus 53 ~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 53 VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345555544 345789999999999999996 5544
No 244
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.41 E-value=0.0054 Score=33.93 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.6
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQY 99 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 99 (116)
.+.+..+|.+++.+++++++++++||+++
T Consensus 31 ~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 31 AVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred ceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 35678889889999999999999999986
No 245
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.34 E-value=0.005 Score=36.32 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.7
Q ss_pred eCCC-cccccc-cCCccccceEEEcCce
Q psy3452 41 DCTE-HGPLCK-EYDIKGYPTFHHLALT 66 (116)
Q Consensus 41 d~~~-~~~~~~-~~~v~~~Pt~~~~~~~ 66 (116)
|++. +..++. .++++.+||+++|+++
T Consensus 61 d~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 61 NADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred ECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 4554 455665 5999999999999874
No 246
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.31 E-value=0.0068 Score=32.37 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=25.1
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEE
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQY 99 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 99 (116)
++.+..+|.+.+.++++++++.++||+++
T Consensus 30 ~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 30 NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 46677888888889999999999999876
No 247
>KOG1752|consensus
Probab=96.20 E-value=0.02 Score=33.86 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=25.7
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+|-|..+||+.|..+...|.+ +.. +..++.+|-..+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~ 51 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDED 51 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCC
Confidence 456999999999997777665 332 566667766544
No 248
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.19 E-value=0.0075 Score=36.03 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=35.7
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC--CcccccccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT--EHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
|.+-|..=......+.+..+...+.-.+ +.+|++ .++.++++++++++||+++|+++
T Consensus 30 wC~~C~~~~~~~~~la~~~~~~~~~v~~--~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 30 WCGHCRAFAPTWKKLARDLRKWRPVVRV--AAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred CCHHHHHHhHHHHHHHHHHHhcCCceEE--EEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 4445544333333343333333333333 667765 46789999999999999999885
No 249
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.12 E-value=0.011 Score=35.83 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=29.5
Q ss_pred eeeEEEEeccC-------ccchhhhcCCC-CCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTE-------HGPLCKEYDIK-GYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~-------~~~~~~~~~v~-~~Pt~~~~~~g~~~ 106 (116)
++.+..+|.+. +.++.++++|. +.||++++++|+++
T Consensus 60 ~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 60 DCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence 46778888764 45899999998 99999999888765
No 250
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.08 E-value=0.02 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc--ccceEEEcCce
Q psy3452 17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK--GYPTFHHLALT 66 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~~ 66 (116)
+....+.++++.++++ .+.|+.+|.++...+.+.+++. .+|++++++..
T Consensus 41 ~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~ 91 (130)
T cd02983 41 KYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFR 91 (130)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecc
Confidence 4567889999999883 2888888888888788888875 47887766653
No 251
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.04 E-value=0.085 Score=30.07 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=21.0
Q ss_pred ccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+.++++++++. -|++++|++... ....|.|+++
T Consensus 54 ~~~~~~~~~~~-~~~i~l~~~~~~-~~~~y~g~~~ 86 (97)
T cd02981 54 DKEVAKKLKVK-PGSVVLFKPFEE-EPVEYDGEFT 86 (97)
T ss_pred hHHHHHHcCCC-CCceEEeCCccc-CCccCCCCCC
Confidence 45566666664 488888876522 3467888754
No 252
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.04 E-value=0.0072 Score=34.63 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.5
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
++.+..+|.+...+++++|+|.+.||+++ +|+.
T Consensus 43 ~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~ 75 (89)
T cd03026 43 NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL 75 (89)
T ss_pred CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE
Confidence 56778888888899999999999999975 4543
No 253
>KOG2603|consensus
Probab=96.01 E-value=0.016 Score=40.45 Aligned_cols=61 Identities=18% Similarity=0.409 Sum_probs=38.2
Q ss_pred EEEEEEc----CCCHHHHhhhHHHHHHHHHhccCc------ceEEEEEeCCCcccccccCCccccceEEEc
Q psy3452 3 YSILFYS----PGCGYCKKAKPEYVKAAEVLKDNH------KVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63 (116)
Q Consensus 3 v~v~F~a----~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 63 (116)
+++.|.| ..|+-|+.+..+++-++.....+. ++-|..||.++.++.-+.+++...|++.+|
T Consensus 63 ~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f 133 (331)
T KOG2603|consen 63 LIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLF 133 (331)
T ss_pred EEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEe
Confidence 4666765 469999999999999988875432 344444444444444444444444444444
No 254
>PRK10824 glutaredoxin-4; Provisional
Probab=95.99 E-value=0.015 Score=35.07 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCccccceEEE
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTFHH 62 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~ 62 (116)
||||.|.+....+.+.. +.+..+|.+++.+ +.+.-+...+|.+.+
T Consensus 28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 69999999988887642 3333445554432 233345556776653
No 255
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.84 E-value=0.0081 Score=42.59 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=34.6
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
.++.++.+|...+..+++++|+...+++++|++|.. ++|.|.++
T Consensus 89 ~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~---IEydG~~s 132 (383)
T PF01216_consen 89 KGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEV---IEYDGERS 132 (383)
T ss_dssp CTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEE---EEE-S--S
T ss_pred cCcceEEeccHHHHHHHHhcCccccCcEEEEECCcE---EEecCccC
Confidence 468899999999999999999999999999999877 78888753
No 256
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.80 E-value=0.0094 Score=39.04 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=28.7
Q ss_pred eceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 69 IIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 69 f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
|..+.|.+++.+. ....|++++.||+++|++|+.+
T Consensus 131 ~~~vkFvkI~ad~---~~~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 131 FPDTKFVKIISTQ---CIPNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred CCCCEEEEEEhHH---hHhhCCCCCCCEEEEEECCEEE
Confidence 3568889988764 3579999999999999999654
No 257
>KOG0908|consensus
Probab=95.75 E-value=0.01 Score=40.33 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=33.4
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
+..|.+||.++-...+..+||...||+++|++|.++
T Consensus 52 ~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 52 GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe
Confidence 677899999999999999999999999999999876
No 258
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.74 E-value=0.035 Score=33.12 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.8
Q ss_pred HHHHhhhHHHHHHHHHhc-cCcceEEEEEeCCCcccccccCCccc----cceEEEcC
Q psy3452 13 GYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKG----YPTFHHLA 64 (116)
Q Consensus 13 ~~C~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~ 64 (116)
..-......+.++++.++ + ++.|+.+|.++.....+.+|++. .|++.+.+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEe
Confidence 444567889999999998 6 68888888887766677777763 66665443
No 259
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.68 E-value=0.018 Score=37.92 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEe
Q psy3452 2 FYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAID 41 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd 41 (116)
+.+++|+.-.|++|.++.+.+ +.+.+.+++ .+.+..+.
T Consensus 39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~ 79 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH 79 (207)
T ss_pred CeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence 468999999999999999866 788888876 34444433
No 260
>KOG1731|consensus
Probab=95.68 E-value=0.019 Score=43.16 Aligned_cols=34 Identities=41% Similarity=0.869 Sum_probs=30.2
Q ss_pred ceeeEEEEecc--CccchhhhcCCCCCCEEEEecCC
Q psy3452 70 IRLALAAIDCT--EHGPLCKEYDIKGYPTFQYFHYF 103 (116)
Q Consensus 70 ~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g 103 (116)
+.+.++.+||. .|..+|++|+|++|||+-+|+.+
T Consensus 91 ~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 91 PVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred ceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence 46788999988 78889999999999999999765
No 261
>KOG3170|consensus
Probab=95.57 E-value=0.074 Score=35.15 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+|+|..|...-+.|.-+...++.++..|+ .++|+++-.+.. ..-|--...||+++|..|
T Consensus 113 wVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~at~c---IpNYPe~nlPTl~VY~~G 171 (240)
T KOG3170|consen 113 WVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPATTC---IPNYPESNLPTLLVYHHG 171 (240)
T ss_pred EEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEecccccc---cCCCcccCCCeEEEeecc
Confidence 68999999999999999999999999999 588888754433 223445678999988877
No 262
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.49 E-value=0.067 Score=30.58 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 61 (116)
+++=.|.+..-+.+++....+.++.+.+-.. ...+--+|..+++++++.+++-.+||++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 4555677888889999888998887766544 5888889999999999999999999987
No 263
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.46 E-value=0.018 Score=33.05 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=33.7
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
|.++|..=......+.+..+....-.- +++|++++ +++..+++.++||+++++++
T Consensus 29 ~C~~C~~~~~~~~~~~~~~~~~~~~~~---~~id~~~~-~~~~~~~~~~~Pt~~~~~~~ 83 (104)
T cd02995 29 WCGHCKALAPIYEELAEKLKGDDNVVI---AKMDATAN-DVPSEFVVDGFPTILFFPAG 83 (104)
T ss_pred CCHHHHHHhhHHHHHHHHhcCCCCEEE---EEEeCcch-hhhhhccCCCCCEEEEEcCC
Confidence 455565554444444444333211112 34777776 47788899999999999875
No 264
>PHA02125 thioredoxin-like protein
Probab=95.35 E-value=0.018 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.1
Q ss_pred eEEEEeccCccchhhhcCCCCCCEEE
Q psy3452 73 ALAAIDCTEHGPLCKEYDIKGYPTFQ 98 (116)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~v~~~Pt~~ 98 (116)
.+..+|.+.+.+++++|+|+++||++
T Consensus 26 ~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 26 TYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred eEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 45778888889999999999999987
No 265
>PTZ00062 glutaredoxin; Provisional
Probab=95.34 E-value=0.016 Score=38.30 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=24.5
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQS 107 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 107 (116)
.+.+..++.+ |+|.++||+++|++|+.+.
T Consensus 48 ~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 48 SLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 5677888755 9999999999999998763
No 266
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.33 E-value=0.015 Score=34.62 Aligned_cols=60 Identities=8% Similarity=0.216 Sum_probs=46.0
Q ss_pred EEEEEcCCCHHHHhhhH---HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 4 SILFYSPGCGYCKKAKP---EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
.+.|.+..|..+.+... .+-++.+.+++ .+..+-++...+..+..+|++...|+++|+++
T Consensus 29 ~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 29 AVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp EEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEEEEEET
T ss_pred EEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeEEEEEC
Confidence 45677777766555443 67788888887 67777778778889999999999999999998
No 267
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.32 E-value=0.0065 Score=36.63 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=20.5
Q ss_pred CcccccccCCcc--ccceEEEcCce
Q psy3452 44 EHGPLCKEYDIK--GYPTFHHLALT 66 (116)
Q Consensus 44 ~~~~~~~~~~v~--~~Pt~~~~~~~ 66 (116)
++.+++++|+|+ ++||+++|+++
T Consensus 66 ~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 66 LNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred hhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 567899999999 99999999975
No 268
>KOG3171|consensus
Probab=95.27 E-value=0.086 Score=35.22 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.++|..|-+.-+-|-++...+.-++..|+ .++|.++-.+.. ....+|....+||+++|++|
T Consensus 161 ~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~-gas~~F~~n~lP~LliYkgG 221 (273)
T KOG3171|consen 161 TIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNT-GASDRFSLNVLPTLLIYKGG 221 (273)
T ss_pred EEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccc-cchhhhcccCCceEEEeeCC
Confidence 46788999999999999999999999998 688888865433 34678888899999999988
No 269
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.23 E-value=0.11 Score=30.96 Aligned_cols=48 Identities=10% Similarity=-0.041 Sum_probs=36.7
Q ss_pred HHhhhHHHHHHHHH---hccCcceEEEEEeCCCcccccccCCccc--cceEEEcC
Q psy3452 15 CKKAKPEYVKAAEV---LKDNHKVALAAIDCTEHGPLCKEYDIKG--YPTFHHLA 64 (116)
Q Consensus 15 C~~~~~~~~~~~~~---~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~ 64 (116)
-.+....++++++. +++ ++.|+.+|.+......+.+|++. .|.+.+.+
T Consensus 29 ~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 29 LESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 35678889999999 777 78888888888777777888875 67666443
No 270
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.11 E-value=0.094 Score=30.89 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
+++=.|.+..-+..++....+.++.+.+-.. ...+--+|..+++.+++.+++-.+||++-
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence 4566778888889999888999887766554 58888999999999999999999999873
No 271
>KOG2640|consensus
Probab=95.08 E-value=0.0025 Score=44.29 Aligned_cols=99 Identities=21% Similarity=0.349 Sum_probs=67.7
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEe-CCCcccccccCCccccceEEEcCce--------------e
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID-CTEHGPLCKEYDIKGYPTFHHLALT--------------I 67 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~~--------------v 67 (116)
+-+.||++||+..+...|.++-....+.. +....++ ...-+...+++++...|++++.+.. +
T Consensus 79 vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sLv 155 (319)
T KOG2640|consen 79 VSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASLV 155 (319)
T ss_pred ccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHHHH
Confidence 45679999999999999999888877762 4444443 3344678899999999999988877 2
Q ss_pred ee-ceee-----EEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 68 MI-IRLA-----LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 68 ~f-~~~~-----~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
.| .++. .-..|+.. --.--+|+..+.||+..-++|..
T Consensus 156 ~fy~~i~~~~v~ie~~d~~~-~~~~~ry~~~~~~t~l~~p~~~~ 198 (319)
T KOG2640|consen 156 NFYTEITPMSVLIEILDCTS-CLEPVRYVPEGGPTILLAPDGNL 198 (319)
T ss_pred HHHHhhccchhcccccCccc-ceeeeEeccccCcccccCcCCCc
Confidence 22 1111 11223333 13334688889999988877754
No 272
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.85 E-value=0.059 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=25.1
Q ss_pred eeeEEEEeccCccchhh--------hcCCCCCCEEEEecCCc
Q psy3452 71 RLALAAIDCTEHGPLCK--------EYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~--------~~~v~~~Pt~~~~~~g~ 104 (116)
.+....+|.+++.++.+ .|++.++||+++++..+
T Consensus 50 ~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 50 NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 45667778777776655 35899999999995543
No 273
>PLN02309 5'-adenylylsulfate reductase
Probab=94.72 E-value=0.031 Score=41.31 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.6
Q ss_pred eCC-Ccccccc-cCCccccceEEEcCce
Q psy3452 41 DCT-EHGPLCK-EYDIKGYPTFHHLALT 66 (116)
Q Consensus 41 d~~-~~~~~~~-~~~v~~~Pt~~~~~~~ 66 (116)
|++ .+..++. +++|+++||+++|+++
T Consensus 405 D~d~~~~~la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 405 RADGDQKEFAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred ECCCcchHHHHhhCCCceeeEEEEEeCC
Confidence 566 5566775 6999999999999865
No 274
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.51 E-value=0.06 Score=32.59 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=17.2
Q ss_pred chhhhcC----CCCCCEEEEecCCccc
Q psy3452 84 PLCKEYD----IKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 84 ~~~~~~~----v~~~Pt~~~~~~g~~~ 106 (116)
++.++|+ |.+.||+++|++|+.+
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 3445554 5569999999999775
No 275
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.058 Score=41.43 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCCHHHHhhhHHH---HHHHHHhccCcceEEEEEeCCCcccccccCC--------ccccceEEEcCce
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEY---VKAAEVLKDNHKVALAAIDCTEHGPLCKEYD--------IKGYPTFHHLALT 66 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~--------v~~~Pt~~~~~~~ 66 (116)
+|+++-...+||-.|.-|..+= .++++.++. ++.-++||.++-+++-+.|. --++|.-+|++++
T Consensus 44 kPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd 118 (667)
T COG1331 44 KPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPD 118 (667)
T ss_pred CCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCC
Confidence 4789999999999999887543 677788877 79999999999988766654 3468888888775
No 276
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.30 E-value=0.055 Score=31.69 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=24.1
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
..|+.++|+.|++....+++. .+.+..+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccC
Confidence 468899999999988777752 455666666543
No 277
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.84 E-value=0.2 Score=31.52 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=33.6
Q ss_pred EEEEEcC------CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc----ccccCCc----cccceEEE
Q psy3452 4 SILFYSP------GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDI----KGYPTFHH 62 (116)
Q Consensus 4 ~v~F~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~ 62 (116)
++.|.++ +|+.|.+....|+.. .+.+..+|++.+.+ +.+..+. ..+|.+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3456677 899999988888753 47777888876643 3333333 56776653
No 278
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.65 E-value=0.22 Score=29.89 Aligned_cols=32 Identities=13% Similarity=0.330 Sum_probs=21.2
Q ss_pred EEEEeccCcc-chhhhcCCCC--CCEEEEec-CCcc
Q psy3452 74 LAAIDCTEHG-PLCKEYDIKG--YPTFQYFH-YFNK 105 (116)
Q Consensus 74 ~~~v~~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~ 105 (116)
+..++.+.+. ...+.|++.+ +||+++++ +|+.
T Consensus 54 fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 54 FVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred EEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 3444444333 4567899986 99999996 5544
No 279
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.40 E-value=0.29 Score=34.99 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=41.9
Q ss_pred EEEEEEcCCCHHHHh-----hhH-HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 3 YSILFYSPGCGYCKK-----AKP-EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 3 v~v~F~a~wC~~C~~-----~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
..|+|+.+--..-.. +.. .++-.++.+..+ .+.+.-||..++..+++++|+...+++.+|+++
T Consensus 54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~-gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~ 122 (383)
T PF01216_consen 54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDK-GIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDG 122 (383)
T ss_dssp EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGC-TEEEEEEETTTTHHHHHHHT--STTEEEEEETT
T ss_pred EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcccc-CcceEEeccHHHHHHHHhcCccccCcEEEEECC
Confidence 456677666322221 122 233345555444 699999999999999999999999999999988
No 280
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=93.24 E-value=0.27 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=32.6
Q ss_pred eeEEEEeccCccchhhhcCCC--CCCEEEEecCCcccCCcCCCCCCC
Q psy3452 72 LALAAIDCTEHGPLCKEYDIK--GYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
+.+.-+|..+...+.+.||++ ++|++++++..+. .-..+.|++|
T Consensus 58 i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t 103 (130)
T cd02983 58 WGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFS 103 (130)
T ss_pred EEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC-ccccccCccC
Confidence 678888988888899999995 4999999966542 1233667654
No 281
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.14 E-value=0.2 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=24.9
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
+..|..++|+.|++....+++- .+.+..+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCCh
Confidence 4568899999999988777642 3566666665543
No 282
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.48 Score=31.13 Aligned_cols=88 Identities=10% Similarity=0.102 Sum_probs=57.5
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc-------ccccCCccccceEEEcCceeeeceee
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-------LCKEYDIKGYPTFHHLALTIMIIRLA 73 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~~v~f~~~~ 73 (116)
++++.|| ++--.-|-.....+.+...+++.. ++.++.+++|..-. +.+..++..+ .
T Consensus 35 w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~-g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i---------------~ 98 (194)
T COG0450 35 WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR-GVEVIGVSTDSVFSHKAWKATIREAGGIGKI---------------K 98 (194)
T ss_pred EEEEEeccCCCCccCcchHHHHHhhhHHHHHc-CCEEEEEecCcHHHHHHHHhcHHhcCCccce---------------e
Confidence 4556666 566677777888898888888877 46777777665421 1223444322 2
Q ss_pred EEEEeccCccchhhhcCCCC------CCEEEEecCCccc
Q psy3452 74 LAAIDCTEHGPLCKEYDIKG------YPTFQYFHYFNKQ 106 (116)
Q Consensus 74 ~~~v~~~~~~~~~~~~~v~~------~Pt~~~~~~g~~~ 106 (116)
..+-++.+.++++.|++-. .-.++++++.+.+
T Consensus 99 -~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~i 136 (194)
T COG0450 99 -FPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVI 136 (194)
T ss_pred -cceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeE
Confidence 3445578899999998753 4567888666654
No 283
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.08 E-value=0.074 Score=30.08 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61 (116)
Q Consensus 7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 61 (116)
|-+..-+........++.+.+.+-+. .+.+--+|..+++++++.+++-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~-~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGG-RYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTT-TEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCC-cEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 45556667778888888888875443 7999999999999999999999999886
No 284
>KOG0914|consensus
Probab=92.89 E-value=0.1 Score=34.94 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=32.0
Q ss_pred ceeeEEEEeccCccchhhhcCCC------CCCEEEEecCCcccC
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIK------GYPTFQYFHYFNKQS 107 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~~~g~~~~ 107 (116)
..++++++|.....+.+.+|+|+ ..||+.+|.+|+.+.
T Consensus 176 ~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 176 NLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred CCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence 45788999988899999999875 679999999997653
No 285
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.85 E-value=0.25 Score=24.52 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=26.1
Q ss_pred eeeEEEEeccCccchhh---hcCCCCCCEEEEecCC
Q psy3452 71 RLALAAIDCTEHGPLCK---EYDIKGYPTFQYFHYF 103 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~---~~~v~~~Pt~~~~~~g 103 (116)
++.+..++++......+ .+++.+.|+++++++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 28 GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 56777788776666554 7899999999999876
No 286
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.62 E-value=0.23 Score=29.54 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=24.9
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
..|..++|+.|++....+++- .+.+..+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCc
Confidence 458899999999988777752 4666667665543
No 287
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.26 E-value=0.27 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=23.7
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
..|+.++|+.|++....+++- .+.+..+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence 468899999999988777652 355556665544
No 288
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=92.10 E-value=0.16 Score=37.77 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=30.2
Q ss_pred EcCCCHHHHhhhHHHHHHH-HH-hccCcceEEEEEeCCCcc-cc-cccCCccccceEEEcCce
Q psy3452 8 YSPGCGYCKKAKPEYVKAA-EV-LKDNHKVALAAIDCTEHG-PL-CKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~-~~-~~~~~~~~~~~vd~~~~~-~~-~~~~~v~~~Pt~~~~~~~ 66 (116)
|.+.|..=......+.+-. .. .. -..+ |++.++ .+ +++++|+++||+++|+++
T Consensus 382 WC~~Ck~m~P~~eelA~~~~~~~v~---~~kV---dvD~~~~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 382 WCPFCQAMEASYLELAEKLAGSGVK---VAKF---RADGDQKEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred CChHHHHHHHHHHHHHHHhccCCcE---EEEE---ECCCCccHHHHHHcCCCccceEEEEECC
Confidence 5566765544444443332 22 21 2223 334332 34 468999999999999875
No 289
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.06 E-value=0.96 Score=29.98 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCCHH-HHhhhHHHHHHHHHhc-cCc-ceEEEEEeCCCc---ccccccCCc-cccceEEEcCc
Q psy3452 1 MFYSILFYSPGCGY-CKKAKPEYVKAAEVLK-DNH-KVALAAIDCTEH---GPLCKEYDI-KGYPTFHHLAL 65 (116)
Q Consensus 1 ~~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~-~~~-~~~~~~vd~~~~---~~~~~~~~v-~~~Pt~~~~~~ 65 (116)
++++|.|.=+.|+. |-.+...+..+.+++. ..+ .+.++.+.+|.+ ++..++|.. ...|.+..+++
T Consensus 68 k~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 68 KPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred CEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeC
Confidence 47889898888865 8888888888888777 333 444444444433 445556666 55565555444
No 290
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=91.85 E-value=0.25 Score=26.53 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=29.3
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-ccccccCCccccceEE
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLCKEYDIKGYPTFH 61 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 61 (116)
+.|+.+||+.|++..-.+.+..- .+....+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 35788999999998766664321 344455554322 2333333444667664
No 291
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.49 Score=26.33 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=18.4
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
+.|+|.-||.|..+..+++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999999988888865
No 292
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=91.38 E-value=0.85 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=32.9
Q ss_pred CeEEEEEEcCCC-HHHHhhhHHHHHHHHHhccCc-ceEEEEEeCCCc
Q psy3452 1 MFYSILFYSPGC-GYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEH 45 (116)
Q Consensus 1 ~~v~v~F~a~wC-~~C~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~ 45 (116)
++++|.|.=+.| ..|-.....+.++.+.+...+ ++.++.+..|..
T Consensus 53 k~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 53 KWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp SEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 468899999999 459888888888888877643 577777766644
No 293
>PRK12559 transcriptional regulator Spx; Provisional
Probab=91.26 E-value=0.52 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=23.5
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+..|..++|+.|++....+++- .+.+..+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCC
Confidence 4568899999999988766642 355555555544
No 294
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=91.20 E-value=0.26 Score=33.98 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=28.0
Q ss_pred eeeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 67 v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
-.|..+.|.++....-. +...|.+...||+++|++|..
T Consensus 173 ~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 173 RKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp HH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEE
T ss_pred HhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEE
Confidence 33478889988866444 778999999999999999854
No 295
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=91.20 E-value=0.3 Score=26.87 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=20.5
Q ss_pred eeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 72 LALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
+.+..++ +.+.+.++++.+.||+++ +|+.
T Consensus 31 ~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~ 59 (76)
T TIGR00412 31 AEFEKVT---DMNEILEAGVTATPGVAV--DGEL 59 (76)
T ss_pred eEEEEeC---CHHHHHHcCCCcCCEEEE--CCEE
Confidence 3445555 344577899999999999 6644
No 296
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.10 E-value=0.36 Score=28.51 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.1
Q ss_pred CccchhhhcCCCCCCEEEEecC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHY 102 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~ 102 (116)
+..++++.|++.++|++++++.
T Consensus 64 e~~~~~~~~~~~~~P~~~~i~~ 85 (114)
T cd02958 64 EGQRFLQSYKVDKYPHIAIIDP 85 (114)
T ss_pred cHHHHHHHhCccCCCeEEEEeC
Confidence 4557889999999999999965
No 297
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.07 E-value=0.33 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.4
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
..|+.++|+.|.+..-.++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc
Confidence 357789999999888777654
No 298
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.85 E-value=0.33 Score=29.02 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=25.2
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
..|+.++|+.|++....+++- .+.+..+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCCh
Confidence 357899999999998877761 4666677766543
No 299
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.80 E-value=0.7 Score=27.53 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=24.0
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+..|+.++|+.|++....+++. .+.+..+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence 3467899999999988777752 355556665544
No 300
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=90.52 E-value=0.46 Score=32.42 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHH
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAE 27 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~ 27 (116)
.+++.|.-+.|++|+++.+.+.++.+
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhh
Confidence 46778999999999999988877544
No 301
>smart00594 UAS UAS domain.
Probab=90.28 E-value=0.58 Score=28.12 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=3.7
Q ss_pred CCccccceEE
Q psy3452 52 YDIKGYPTFH 61 (116)
Q Consensus 52 ~~v~~~Pt~~ 61 (116)
+++.++|++.
T Consensus 82 ~~~~~~P~~~ 91 (122)
T smart00594 82 YKLDSFPYVA 91 (122)
T ss_pred cCcCCCCEEE
Confidence 3333333333
No 302
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.13 Score=32.73 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred CcccccccCCccccceEEEcCce
Q psy3452 44 EHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 44 ~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
+.+++++.++++++||++|+++.
T Consensus 103 s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 103 STEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred cHHHHHHHhccccCceEEEEcCC
Confidence 44689999999999999999975
No 303
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.66 E-value=0.49 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHh
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVL 29 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~ 29 (116)
.++|.|..|-|+-|......+.++..+|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 5799999999999999998887777666
No 304
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.50 E-value=1.5 Score=29.99 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
++.+++..+.|||.|...+=.+-..-.++. ++.+.....+. ...--.+||++|..-
T Consensus 59 k~~v~~igw~gCP~~A~~sW~L~~ALsrfG---n~~l~~~~S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 59 KPEVIFIGWEGCPYCAAESWALYIALSRFG---NFSLEYHYSDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred eeEEEEEecccCccchhhHHHHHHHHHhcC---CeeeEEeecCc------ccCCCCCCeEEEecC
Confidence 367888999999999988755555555565 34222221111 111247899998887
No 305
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=89.28 E-value=0.45 Score=25.30 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.7
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
..|+.++|+.|++.+-.+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 357789999999988777654
No 306
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.05 E-value=1.7 Score=23.67 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=16.4
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
..++.++|+.|.+.+-.+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 457788999999987777653
No 307
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=88.95 E-value=1.2 Score=27.47 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+..|..++|+.|++....+++- .+.+..+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCC
Confidence 3467899999999987666641 466666666544
No 308
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=88.81 E-value=0.89 Score=24.23 Aligned_cols=19 Identities=26% Similarity=0.439 Sum_probs=15.5
Q ss_pred EEEcCCCHHHHhhhHHHHH
Q psy3452 6 LFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~ 24 (116)
.++.++|+.|.+.+-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 5778999999998877664
No 309
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.09 E-value=0.25 Score=28.52 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=32.7
Q ss_pred EcCCCHHHHhhh---HHHHHHHH-HhccCcceEEEE-EeCCCcccccccCCccccceEEEcCc
Q psy3452 8 YSPGCGYCKKAK---PEYVKAAE-VLKDNHKVALAA-IDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 8 ~a~wC~~C~~~~---~~~~~~~~-~~~~~~~~~~~~-vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
|.++|..=.... +.+.+..+ .+. .+.+-. .+-.....+++++++.++||+++|++
T Consensus 22 wC~~C~~~~~~~~~~~~~~~~~~~~~~---~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 22 WCVTCKVNEKVVFSDPEVQAALKKDVV---LLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHhCCeE---EEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 566776554322 44443333 333 222222 23334578899999999999999984
No 310
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=87.55 E-value=0.26 Score=29.52 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred CcccccccCCccccceEEEcCce
Q psy3452 44 EHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 44 ~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
....+++++++.++||++|++++
T Consensus 72 ~~~~l~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 72 SEKELARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred cHHHHHHHcCCccccEEEEEcCC
Confidence 45678899999999999999973
No 311
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=87.26 E-value=0.86 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.6
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
..|+.++|+.|++..-.+++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc
Confidence 457889999999988776653
No 312
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=87.01 E-value=0.27 Score=27.77 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 19 KPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
...+++..+..+. ....+..+.+....+.+.+++.++|++++++.
T Consensus 47 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 47 EEEWKKFLKKNNF--PWYNVPFDDDNNSELLKKYGINGIPTLVLLDP 91 (95)
T ss_dssp HHHHHHHHHTCTT--SSEEEETTTHHHHHHHHHTT-TSSSEEEEEET
T ss_pred HHHHHHHHHhcCC--CceEEeeCcchHHHHHHHCCCCcCCEEEEECC
Confidence 4556665555532 34444455555678899999999999998875
No 313
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.93 E-value=0.51 Score=29.07 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred CccchhhhcCCCCCCEEEEecCCc
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
-++.+.++|+|+.+|++++.+++.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCC
Confidence 478899999999999999997763
No 314
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=86.64 E-value=1.7 Score=29.44 Aligned_cols=44 Identities=9% Similarity=0.287 Sum_probs=36.2
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCc--ceEEEEEeCCCc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEH 45 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~ 45 (116)
+++|-+-..+|..|..-+..|+.+..++...+ +|.|+.|+-...
T Consensus 28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 56777888899999999999999998887666 899999985543
No 315
>KOG3171|consensus
Probab=86.41 E-value=4.9 Score=27.15 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=29.4
Q ss_pred eeceeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 68 MIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 68 ~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
.++.+.|.++. ..+....++|.....||+++|++|+.|
T Consensus 187 eyP~vKFckik-ss~~gas~~F~~n~lP~LliYkgGeLI 224 (273)
T KOG3171|consen 187 EYPIVKFCKIK-SSNTGASDRFSLNVLPTLLIYKGGELI 224 (273)
T ss_pred cCCceeEEEee-eccccchhhhcccCCceEEEeeCCchh
Confidence 34677777766 345566789999999999999999765
No 316
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=85.99 E-value=1.1 Score=26.74 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 21 EYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
.+++..++++ +.+..+..+....+++.|++..+|+.++++.
T Consensus 69 ~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~ 109 (127)
T cd03010 69 NALAWLARHG----NPYAAVGFDPDGRVGIDLGVYGVPETFLIDG 109 (127)
T ss_pred HHHHHHHhcC----CCCceEEECCcchHHHhcCCCCCCeEEEECC
Confidence 3444444442 3343445567778999999999997777653
No 317
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=85.95 E-value=1.8 Score=25.45 Aligned_cols=42 Identities=5% Similarity=-0.001 Sum_probs=28.3
Q ss_pred HHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 20 PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
..+.+..++++- .+.+ -.+.+..++++|++.++|++++++++
T Consensus 62 ~~~~~~~~~~~~--~~~~---~~d~~~~~~~~~~i~~~P~~~vid~~ 103 (123)
T cd03011 62 GAVARFMQKKGY--GFPV---INDPDGVISARWGVSVTPAIVIVDPG 103 (123)
T ss_pred HHHHHHHHHcCC--CccE---EECCCcHHHHhCCCCcccEEEEEcCC
Confidence 445555555532 2332 23566789999999999999999863
No 318
>KOG1672|consensus
Probab=85.86 E-value=0.6 Score=30.77 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=32.1
Q ss_pred ceeeEEEEeccCccchhhhcCCCCCCEEEEecCCcc
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
....|.++++..-+=++.+++|.-.|++++|++|..
T Consensus 114 ~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 114 VETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred ccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE
Confidence 467888999998999999999999999999999853
No 319
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.58 E-value=1.1 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.9
Q ss_pred ccchhhhcCCCCCCEEEEecC
Q psy3452 82 HGPLCKEYDIKGYPTFQYFHY 102 (116)
Q Consensus 82 ~~~~~~~~~v~~~Pt~~~~~~ 102 (116)
++.+.++|+|+.+||+++.++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 677888888888888888866
No 320
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.22 E-value=1.7 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.412 Sum_probs=32.6
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCcc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK 55 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 55 (116)
++.+++|.|+=|......++. + .+.+-.+..++-..+-++++|.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp 71 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIP 71 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCC
Confidence 677899999999998776662 2 3666667677777777777774
No 321
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=84.11 E-value=6.1 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=30.0
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCce
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.++.|..+. ..|.++...++++++.-+ ++.+...+... ..|++.+++++
T Consensus 22 ~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~ 70 (94)
T cd02974 22 ELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPG 70 (94)
T ss_pred EEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCC
Confidence 344555544 889998888888877654 45553322211 35777776554
No 322
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=83.98 E-value=0.8 Score=27.40 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEE
Q psy3452 17 KAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 62 (116)
.+.+.+..+.+........ ....-++.+-++|+|+.+||+++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~ 77 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVV 77 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEE
Confidence 3444555554444432211 33455788899999999999874
No 323
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=83.32 E-value=1.1 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=28.7
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCccccceEE
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDIKGYPTFH 61 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~ 61 (116)
..|+.++|+.|++.+-.+++..- .+....+|..+. +++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46789999999987766665322 244444544322 2333333334566664
No 324
>KOG2603|consensus
Probab=83.28 E-value=2.4 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=29.5
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHY 102 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 102 (116)
++-+..+|.++.++..+++++...|++++|++
T Consensus 104 klFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 104 KLFFCMVDYDESPQVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred eEEEEEEeccccHHHHHHhcccCCCeEEEeCC
Confidence 67889999999999999999999999999944
No 325
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.70 E-value=1.5 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEE
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAI 40 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~v 40 (116)
+|.+++|.+-.||+=..-.+.++++++++.+ ...|+.|
T Consensus 103 RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~V 140 (237)
T PF00837_consen 103 RPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIV 140 (237)
T ss_pred CCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehh
Confidence 4789999999999999999999999999987 3344433
No 326
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=1.2 Score=29.52 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHHHHHHh
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVL 29 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~~~~~~ 29 (116)
|..+.+.+-|-|+.|--..|.++++....
T Consensus 1 ~~~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 1 GVTLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred CceeEEecCcchhhhhCccHHHHHHHhcC
Confidence 45678889999999999999999988764
No 327
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=81.23 E-value=2.8 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=16.7
Q ss_pred EEEEEcCCCHHHHhhhHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~ 24 (116)
+..|+.+.|+.|++.+-.+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 346788999999998876665
No 328
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.04 E-value=1.1 Score=28.63 Aligned_cols=27 Identities=30% Similarity=0.515 Sum_probs=24.4
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
+..|+-+.||.|-...+.++++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999984
No 329
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.37 E-value=9.7 Score=24.17 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
.+..|+..-||.|-...+.++++.+.+++- .+....+.....
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccccc
Confidence 367899999999999999999999999442 566666665443
No 330
>KOG0913|consensus
Probab=80.16 E-value=1.8 Score=29.39 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
.+..+.+|...+..+--+|-|...|||+-.++|.. -.|.|+.+
T Consensus 72 ~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeF---rrysgaRd 114 (248)
T KOG0913|consen 72 GVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEF---RRYSGARD 114 (248)
T ss_pred ceeEEEEEEEeccccceeeEEEecceEEEeecccc---ccccCccc
Confidence 57889999999999999999999999999999976 67887653
No 331
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=80.05 E-value=4.9 Score=23.79 Aligned_cols=34 Identities=6% Similarity=-0.041 Sum_probs=28.7
Q ss_pred ceeeEEEEeccCccchhhhcCCCC--CCEEEEecCC
Q psy3452 70 IRLALAAIDCTEHGPLCKEYDIKG--YPTFQYFHYF 103 (116)
Q Consensus 70 ~~~~~~~v~~~~~~~~~~~~~v~~--~Pt~~~~~~g 103 (116)
+++.+..+|.+......+.||++. +|++.+....
T Consensus 48 gki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~ 83 (111)
T cd03072 48 GAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFR 83 (111)
T ss_pred ceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcch
Confidence 568888899887777999999997 8999999654
No 332
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=79.71 E-value=7.8 Score=22.99 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=31.7
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC--cccccccCCcc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE--HGPLCKEYDIK 55 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~ 55 (116)
|+|.|..+-=.. .+....+.++++...+ .-.++.+||.. ...+|+++.+.
T Consensus 22 VLvLy~ks~k~a-~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 22 VLVLYSKSAKSA-EALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred EEEEEecchhhH-HHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccC
Confidence 566665544333 3345577888888887 45677777775 45667766665
No 333
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.47 E-value=4 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.0
Q ss_pred CccchhhhcCCCCCCEEEEecCCc
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
++.+.+.+.||.++||+++.+.+.
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCe
Confidence 344666789999999999997664
No 334
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=79.31 E-value=3.3 Score=24.73 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.2
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+..|..|.|+.|++....+++- .+.+..+|..++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcC
Confidence 3468899999999988776642 355555555443
No 335
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=78.73 E-value=2 Score=25.75 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.7
Q ss_pred CccchhhhcCCCCCCEEEEe
Q psy3452 81 EHGPLCKEYDIKGYPTFQYF 100 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~ 100 (116)
+..+++..++++++|++.++
T Consensus 64 eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 64 EGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHHHHhCCCCCCEEEEE
Confidence 45678899999999999999
No 336
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=78.54 E-value=2.2 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=23.6
Q ss_pred eeeEEEEeccCccchhhhc--------CCCCCCEEEEe-cCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEY--------DIKGYPTFQYF-HYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~ 106 (116)
.+...++|.++.+++.+.| +..++|+.+++ ++|+.+
T Consensus 72 ~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 72 NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 4555778888999998888 78999999999 444443
No 337
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=78.15 E-value=2.5 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.9
Q ss_pred CCcccccccCCccccceEEEcCce
Q psy3452 43 TEHGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 43 ~~~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
.-++.+-++|+|+.+|++++.+++
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCC
Confidence 346788899999999999987764
No 338
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=77.78 E-value=6.3 Score=24.27 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=14.0
Q ss_pred CCCCEEEEecCCcccCCcCCCCC
Q psy3452 92 KGYPTFQYFHYFNKQSPSPYHND 114 (116)
Q Consensus 92 ~~~Pt~~~~~~g~~~~~~~y~g~ 114 (116)
.++||+++++..+++ .....|-
T Consensus 78 ~~vPtivFld~~g~v-i~~i~Gy 99 (130)
T cd02960 78 QYVPRIMFVDPSLTV-RADITGR 99 (130)
T ss_pred cccCeEEEECCCCCC-ccccccc
Confidence 689999999665443 2333443
No 339
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=75.84 E-value=9.6 Score=21.31 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.2
Q ss_pred EEEEcCCCHHHHhhhHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~ 24 (116)
..|+.+.|+.|++..-.+++
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~ 39 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAA 39 (89)
T ss_pred EEEeCCCCchHHHHHHHHHH
Confidence 44668889999988766665
No 340
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.34 E-value=1.6 Score=27.42 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=20.7
Q ss_pred CccchhhhcCCCCCCEEEEecCCc-ccCCcCCCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFN-KQSPSPYHN 113 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~y~g 113 (116)
++.+++++++|.+.||+++ +|+ .+.+..+.|
T Consensus 131 ~~~~~~~~~gi~gTPt~iI--nG~~~~~~~~~~~ 162 (178)
T cd03019 131 KAEKLAKKYKITGVPAFVV--NGKYVVNPSAIGG 162 (178)
T ss_pred HHHHHHHHcCCCCCCeEEE--CCEEEEChhhccc
Confidence 4456778999999999998 343 234444443
No 341
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=11 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhcc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKD 31 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~ 31 (116)
++++.|....|++|++..|.+.+.......
T Consensus 86 v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 86 VTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred ceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 468889999999999888888885555443
No 342
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=74.42 E-value=7.7 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=26.3
Q ss_pred eeeEEEEeccCccchhhhcCCCC----CCEEEEecC
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKG----YPTFQYFHY 102 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~----~Pt~~~~~~ 102 (116)
++.++-+|.+....+.+.||++. +|++.+++.
T Consensus 51 ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 51 KLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred eEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 56778888887777889999985 999999964
No 343
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=73.86 E-value=12 Score=20.08 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=30.1
Q ss_pred EEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc-ccccccCCccccceEE
Q psy3452 6 LFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH-GPLCKEYDIKGYPTFH 61 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 61 (116)
.+..++|+.|++..-.++... . .+.+..++..+. +.+.+...-..+|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~--i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG--I----PYELVPVDPEEKRPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT--E----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE
T ss_pred CCCcCCChHHHHHHHHHHHcC--C----eEEEeccCcccchhHHHhhcccccceEEE
Confidence 367899999999876665421 1 344555554432 3344444555677775
No 344
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=72.24 E-value=3 Score=28.49 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.8
Q ss_pred CccchhhhcCCCCCCEEEEecC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHY 102 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~ 102 (116)
++.++.+++||++.||+++-+.
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d~ 228 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMDK 228 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEECC
Confidence 4667888999999999999864
No 345
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=71.36 E-value=6.6 Score=23.65 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~ 24 (116)
+-.|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 345889999999998877775
No 346
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=71.24 E-value=5.9 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.9
Q ss_pred cccccccCCccccceEEEcCce
Q psy3452 45 HGPLCKEYDIKGYPTFHHLALT 66 (116)
Q Consensus 45 ~~~~~~~~~v~~~Pt~~~~~~~ 66 (116)
...++++|++.++||.++++.+
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECCC
Confidence 4578899999999999999864
No 347
>PRK10026 arsenate reductase; Provisional
Probab=70.87 E-value=8 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCHHHHhhhHHHHH
Q psy3452 1 MFYSILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 1 ~~v~v~F~a~wC~~C~~~~~~~~~ 24 (116)
|.-+..|+.+.|..|++....+++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHH
Confidence 444667889999999998877764
No 348
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.94 E-value=8.2 Score=22.55 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=27.7
Q ss_pred EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCc
Q psy3452 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDI 54 (116)
Q Consensus 7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v 54 (116)
||-.+|+-|......+.+. ...+.+.++.+......++.+.+++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~ 45 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGI 45 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCc
Confidence 6788999999998888765 2112566666644444433344444
No 349
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.52 E-value=3 Score=28.13 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=24.7
Q ss_pred CeEEEEEE-cCCCHHHHhhhHHHHHHHHHhccC
Q psy3452 1 MFYSILFY-SPGCGYCKKAKPEYVKAAEVLKDN 32 (116)
Q Consensus 1 ~~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~ 32 (116)
|.+-|++| -.-||.|--..+-++++...+++.
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~ 36 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQE 36 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcc
Confidence 34455555 567999999999999999998863
No 350
>PRK10853 putative reductase; Provisional
Probab=67.74 E-value=8.4 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.2
Q ss_pred EEEEEcCCCHHHHhhhHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~ 24 (116)
+..|..+.|..|++....+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 456889999999998877764
No 351
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.28 E-value=25 Score=21.15 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=39.9
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccccc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC 49 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~ 49 (116)
.++.|--.--+.-.++.+.+.++++.+..+..+.++-+|-+..+-+.
T Consensus 23 ~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv 69 (120)
T cd03074 23 HIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLV 69 (120)
T ss_pred eEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhh
Confidence 35667777778889999999999999998779999999999887554
No 352
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=67.27 E-value=12 Score=25.08 Aligned_cols=78 Identities=12% Similarity=0.209 Sum_probs=47.7
Q ss_pred cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc---cccCCccccceEEEcCceeeeceeeEEEEeccCccch
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL---CKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPL 85 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~~~~~ 85 (116)
...|+-|..+...+.-....+... .+.++.|.-..-+++ .++.|-+ +|-+ .....+.
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~r-d~tfa~vSraP~~~i~afk~rmGW~-~pw~------------------Ss~gs~F 141 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHAR-DTTFAVVSRAPLEKIEAFKRRMGWT-FPWY------------------SSYGSDF 141 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhC-CceEEEEeCCCHHHHHHHHHhcCCC-ceEE------------------EcCCCcc
Confidence 578999999999886666666654 377777766554443 3343333 3311 1234455
Q ss_pred hhhcCC-----CCCCEEEEe-cCCccc
Q psy3452 86 CKEYDI-----KGYPTFQYF-HYFNKQ 106 (116)
Q Consensus 86 ~~~~~v-----~~~Pt~~~~-~~g~~~ 106 (116)
...|++ ...|.+.+| ++|+.|
T Consensus 142 n~D~~~~~~~~~~~~g~svF~Rdg~~V 168 (211)
T PF05988_consen 142 NYDFGVSFDEGGEMPGLSVFLRDGGRV 168 (211)
T ss_pred cccccceeccCCCceeEEEEEEcCCEE
Confidence 556665 567888777 666553
No 353
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=65.77 E-value=8.2 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=22.6
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
..|+.+.|..|++....+++- .+.+..+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccC
Confidence 468899999999988666642 345555555443
No 354
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=65.14 E-value=9.4 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred EEEEEeCCCcccccccCCccccceEEEcCc
Q psy3452 36 ALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 36 ~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
.+..+..+.+..+++.|++.++|+.++++.
T Consensus 117 ~f~~v~~D~~~~~~~~~~v~~~P~~~~id~ 146 (173)
T TIGR00385 117 PYQAILIDPNGKLGLDLGVYGAPETFLVDG 146 (173)
T ss_pred CCceEEECCCCchHHhcCCeeCCeEEEEcC
Confidence 333344567778899999999997777754
No 355
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=63.52 E-value=9.5 Score=22.65 Aligned_cols=33 Identities=6% Similarity=0.246 Sum_probs=23.1
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
..|+.+.|..|++....+++- .+.+..+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCC
Confidence 468899999999988777752 345555665444
No 356
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=63.35 E-value=5.6 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.5
Q ss_pred CccchhhhcCCCCCCEEEEec
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFH 101 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~ 101 (116)
-++.+.++|+|+.+|++++.-
T Consensus 150 IDP~lF~~F~I~~VPafVv~C 170 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFC 170 (212)
T ss_pred ECHHHHHhcCCccccEEEEEc
Confidence 378899999999999999973
No 357
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.05 E-value=5.5 Score=20.88 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=16.0
Q ss_pred EEEEcCCCHHHHhhhHHHHHH
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~ 25 (116)
..|+.+.|+.|.+.+-.+++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL 22 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc
Confidence 357789999999887666653
No 358
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=60.42 E-value=20 Score=20.91 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
|+.+.|..|++....+++ . .+.+..+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~---gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----N---GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----T---T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH-----c---CCCeEeehhhhCC
Confidence 578999999998887775 1 4677777776643
No 359
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=59.42 E-value=6 Score=30.10 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.7
Q ss_pred EEEeCCCcccccccCCccccceEEEcCc
Q psy3452 38 AAIDCTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 38 ~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
..++.+.+..+++.+++..+||+++++.
T Consensus 121 ~pV~~D~~~~lak~fgV~giPTt~IIDk 148 (521)
T PRK14018 121 LPVLTDNGGTLAQSLNISVYPSWAIIGK 148 (521)
T ss_pred cceeccccHHHHHHcCCCCcCeEEEEcC
Confidence 4567788889999999999999987754
No 360
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=57.38 E-value=20 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~ 24 (116)
+..|..+.|..|++....+++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456889999999998877775
No 361
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.03 E-value=16 Score=26.95 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=31.5
Q ss_pred EEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEE
Q psy3452 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61 (116)
Q Consensus 7 F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 61 (116)
|++-.|..|-..-..+.-++ .++. ++.-..+|-.-.++-.+.-+|..+||+.
T Consensus 123 y~SltC~nCPDVVQALN~ms-vlNp--~I~H~~IdGa~Fq~Evear~IMaVPtvf 174 (520)
T COG3634 123 YFSLTCHNCPDVVQALNLMS-VLNP--RIKHTAIDGALFQDEVEARNIMAVPTVF 174 (520)
T ss_pred EEEeeccCChHHHHHHHHHH-hcCC--CceeEEecchhhHhHHHhccceecceEE
Confidence 45666777766554444433 3333 5666677766555556666777788775
No 362
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=55.45 E-value=8.2 Score=25.66 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.3
Q ss_pred EeccCccchhhhcCCCCCCEEEEe
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQYF 100 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~~ 100 (116)
+-.++++.+.++|+|+.+|+++--
T Consensus 169 vYfdQ~g~Lt~rF~I~~VPavV~q 192 (202)
T TIGR02743 169 IYFDQHGKLTQKFGIKHVPARVSQ 192 (202)
T ss_pred eEEcCCchHhhccCceeeceEEEe
Confidence 344788899999999999999864
No 363
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=55.05 E-value=10 Score=21.26 Aligned_cols=28 Identities=0% Similarity=-0.111 Sum_probs=21.6
Q ss_pred chhhhcCCCCCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDIKGYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~y 111 (116)
..++.|++...+++++..+|..++..+|
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd~Eey 56 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVDTEEF 56 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEccHHH
Confidence 4566788877788999999988766665
No 364
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=54.47 E-value=10 Score=21.37 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=20.7
Q ss_pred hhhhcCCCCCCEEEEecCCcccCCcCC
Q psy3452 85 LCKEYDIKGYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 85 ~~~~~~v~~~Pt~~~~~~g~~~~~~~y 111 (116)
-++.++++.-+++++..+|..++..+|
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd~Eey 56 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVDSEDF 56 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEccHHH
Confidence 455688887789999999987766555
No 365
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=52.75 E-value=47 Score=19.69 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH 45 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 45 (116)
+++|-=.|+-|+.-. -...++++.++|++.+ +.++..-|.+.
T Consensus 23 v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcnqF 64 (108)
T PF00255_consen 23 VLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCNQF 64 (108)
T ss_dssp EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBSTT
T ss_pred EEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehHHh
Confidence 456666699999888 5669999999998764 77777766553
No 366
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=50.85 E-value=11 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.7
Q ss_pred EeccCccchhhhcCCCCCCEEEE
Q psy3452 77 IDCTEHGPLCKEYDIKGYPTFQY 99 (116)
Q Consensus 77 v~~~~~~~~~~~~~v~~~Pt~~~ 99 (116)
+-.++.+.+.++|+|+.+|+++-
T Consensus 167 vYfdQ~G~Lt~rF~I~~VPAvV~ 189 (209)
T PRK13738 167 IYFDQNGVLCQRFGIDQVPARVS 189 (209)
T ss_pred eEEcCcchHHHhcCCeeeceEEE
Confidence 34467888999999999999986
No 367
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=50.61 E-value=7.8 Score=29.79 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=33.8
Q ss_pred EcCCCHHHHhh---hHHHHHHHHHhccCcceEEEEEe-CCCcccccccCCccccceEEEcCc
Q psy3452 8 YSPGCGYCKKA---KPEYVKAAEVLKDNHKVALAAID-CTEHGPLCKEYDIKGYPTFHHLAL 65 (116)
Q Consensus 8 ~a~wC~~C~~~---~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~ 65 (116)
|-.+|..=... .+.+++..+.+. -+.+-.-+ ..++.++++++++.++||+++++.
T Consensus 485 WC~~Ck~~e~~~~~~~~v~~~l~~~~---~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~ 543 (571)
T PRK00293 485 WCVACKEFEKYTFSDPQVQQALADTV---LLQADVTANNAEDVALLKHYNVLGLPTILFFDA 543 (571)
T ss_pred cCHhHHHHHHHhcCCHHHHHHhcCCE---EEEEECCCCChhhHHHHHHcCCCCCCEEEEECC
Confidence 55677654332 244444334444 23333222 346678999999999999999974
No 368
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=49.94 E-value=14 Score=20.65 Aligned_cols=28 Identities=11% Similarity=-0.030 Sum_probs=21.0
Q ss_pred chhhhcCC-CCCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDI-KGYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v-~~~Pt~~~~~~g~~~~~~~y 111 (116)
..++.+++ .+.+++++..+|..++..+|
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~Vd~Eey 57 (78)
T cd06539 29 KTLDALVITSGLVTLVLEEDGTVVDTEEF 57 (78)
T ss_pred HHHHHhCCCCCCcEEEEeCCCCEEccHHH
Confidence 45667888 45789999999988766655
No 369
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=48.27 E-value=6.8 Score=24.50 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=11.8
Q ss_pred CCCHHHHhhhHHHH
Q psy3452 10 PGCGYCKKAKPEYV 23 (116)
Q Consensus 10 ~wC~~C~~~~~~~~ 23 (116)
-.|++|++..|.+.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 36999999998875
No 370
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=48.14 E-value=6.6 Score=24.51 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=11.7
Q ss_pred CCCHHHHhhhHHHH
Q psy3452 10 PGCGYCKKAKPEYV 23 (116)
Q Consensus 10 ~wC~~C~~~~~~~~ 23 (116)
-.|++|++..|.+.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 36999999999875
No 371
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=46.79 E-value=76 Score=21.11 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEV 28 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~ 28 (116)
+=+|.+..|..|-.....+.++++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~ 26 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR 26 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC
Confidence 3468899999999999999999988
No 372
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.19 E-value=44 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=41.6
Q ss_pred eEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccCccchhhhcCCCCCCEEEEe
Q psy3452 35 VALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100 (116)
Q Consensus 35 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 100 (116)
-.+..+.|..+++..+.+++.++= + +++....+|..-..+-...-+|.++||+++-
T Consensus 121 ETy~SltC~nCPDVVQALN~msvl-----N-----p~I~H~~IdGa~Fq~Evear~IMaVPtvfln 176 (520)
T COG3634 121 ETYFSLTCHNCPDVVQALNLMSVL-----N-----PRIKHTAIDGALFQDEVEARNIMAVPTVFLN 176 (520)
T ss_pred EEEEEeeccCChHHHHHHHHHHhc-----C-----CCceeEEecchhhHhHHHhccceecceEEEc
Confidence 457788999999999888876521 1 2556677776666666667799999999975
No 373
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=45.36 E-value=34 Score=18.26 Aligned_cols=51 Identities=6% Similarity=-0.045 Sum_probs=27.6
Q ss_pred EEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCc----ccccccCCccccceEE
Q psy3452 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEH----GPLCKEYDIKGYPTFH 61 (116)
Q Consensus 5 v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~ 61 (116)
..|+.+.|+.|++.+-.+++..- .+....++.... +++.+..-...+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 45778889999887755554322 344555554322 1233333334567664
No 374
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.19 E-value=46 Score=17.37 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=14.3
Q ss_pred EEEcCCCHHHHhhhHHHHH
Q psy3452 6 LFYSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~ 24 (116)
.|+.+.|+.|.+.+-.+..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~ 21 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHE 21 (73)
T ss_pred EecCCCCcHHHHHHHHHHH
Confidence 4678889999987765554
No 375
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=44.64 E-value=28 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=21.7
Q ss_pred CccchhhhcCCCCCCEEEEecCC----c-ccCCcCCCCCCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYF----N-KQSPSPYHNDYT 116 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g----~-~~~~~~y~g~~~ 116 (116)
.+.++.+.+++ .|++++|++. + ......|.|+++
T Consensus 54 ~~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~~~ 92 (104)
T cd03069 54 SDKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGDLD 92 (104)
T ss_pred ChHHHHHhcCC--CCceEEEechhhhcccCcccccccCcCC
Confidence 35567788888 7888888431 1 123456888764
No 376
>KOG3414|consensus
Probab=44.54 E-value=49 Score=20.52 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=25.8
Q ss_pred eEEEEeccCccchhhhcCCCCCCEEEEecCCc
Q psy3452 73 ALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFN 104 (116)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 104 (116)
..+.+|.++-++..+-|++...||+.+|-+++
T Consensus 57 ~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 57 VIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred EEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 44556777888899999999999999886654
No 377
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.43 E-value=27 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.8
Q ss_pred cchhhhcCCCCCCEEEEecCCcc
Q psy3452 83 GPLCKEYDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 83 ~~~~~~~~v~~~Pt~~~~~~g~~ 105 (116)
.-++++.++.+|||+++-++|+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~ 186 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM 186 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce
Confidence 45778999999999999998863
No 378
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=44.29 E-value=37 Score=19.44 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=21.3
Q ss_pred CccchhhhcCCCCCCEEEEecCCcccCCcCC-CCCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYFNKQSPSPY-HNDY 115 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~y-~g~~ 115 (116)
.+.++.+.+++. .|+++++++.. .....| .|+.
T Consensus 55 ~~~~~~~~~~~~-~~~i~l~~~~~-e~~~~y~~g~~ 88 (102)
T cd03066 55 FDSKVAKKLGLK-MNEVDFYEPFM-EEPVTIPDKPY 88 (102)
T ss_pred CcHHHHHHcCCC-CCcEEEeCCCC-CCCcccCCCCC
Confidence 355667777764 79999997632 224668 6654
No 379
>KOG0911|consensus
Probab=43.12 E-value=11 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=32.1
Q ss_pred eeeEEEEeccCccchhhhcCCCCCCEEEEecCCccc
Q psy3452 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106 (116)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 106 (116)
++.+.+.+.++..+++..+.+...|++.++..|+++
T Consensus 48 ~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 48 NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh
Confidence 567888899999999999999999999999887665
No 380
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=42.87 E-value=30 Score=18.21 Aligned_cols=22 Identities=5% Similarity=-0.084 Sum_probs=15.7
Q ss_pred EEEEEcCCCHHHHhhhHHHHHH
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~ 25 (116)
+-.|+.+.|+.|++..-.+.+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~ 23 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK 23 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc
Confidence 4456677799999887666653
No 381
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=42.77 E-value=20 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.1
Q ss_pred CCCHHHHhhhHHHHHHHHHhcc
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLKD 31 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~~ 31 (116)
++||.|...+..++++++.++.
T Consensus 95 t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 95 TLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HhCHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998875
No 382
>KOG0852|consensus
Probab=42.66 E-value=40 Score=22.13 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=21.3
Q ss_pred eEEEEEE-cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452 2 FYSILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE 44 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 44 (116)
+|++.|| .++---|-...-.+-+.+.++...+ -.++.+.+|+
T Consensus 35 yvvlfFyplDftfVcPteIiafSd~~~eF~~~n-~eVig~S~DS 77 (196)
T KOG0852|consen 35 YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN-TEVLGISTDS 77 (196)
T ss_pred EEEEEecCCceeeECchhhhhhhhhHHHHHhcC-CeEEEEeccc
Confidence 5666676 3343345444445555555665543 3444444443
No 383
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=41.37 E-value=25 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=22.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEE
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAI 40 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~v 40 (116)
+-.|+-.-||.|---...++++.+..+- .+...-+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v--~i~~~P~ 37 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNV--DITYVPV 37 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCC--eEEEEee
Confidence 3345577888888877788887765432 3444444
No 384
>KOG2792|consensus
Probab=40.68 E-value=78 Score=22.15 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCHH-HHhhhHHHHHHHHHhccCc----ceEEEEEeCC
Q psy3452 2 FYSILFYSPGCGY-CKKAKPEYVKAAEVLKDNH----KVALAAIDCT 43 (116)
Q Consensus 2 ~v~v~F~a~wC~~-C~~~~~~~~~~~~~~~~~~----~~~~~~vd~~ 43 (116)
.++++|.=+.||- |-.....|..+.+.+.... .-.|+.+|-.
T Consensus 141 w~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 141 WSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred eEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 6789999999986 7766666655555554443 2245566543
No 385
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.32 E-value=99 Score=19.79 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=51.8
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC---CcccccccCCccccceEEEcCceeeeceeeEEEEecc
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT---EHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCT 80 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~ 80 (116)
+.-|=+=.-+-|...-..+.+.+.++.+ ..++.+..| ...++|...|+..+-++ ..-
T Consensus 49 i~v~PSiDT~VC~~qvr~Fn~~aa~~~~---~~Vl~IS~DLPFAq~RfC~aeGi~nv~~l-----------------Sd~ 108 (158)
T COG2077 49 ISVFPSIDTPVCATQVRKFNEEAAKLGN---TVVLCISMDLPFAQKRFCGAEGIENVITL-----------------SDF 108 (158)
T ss_pred EEEccCCCCchhhHHHHHHHHHHhccCC---cEEEEEeCCChhHHhhhhhhcCcccceEh-----------------hhh
Confidence 3445455667788888888888888875 444444444 45677888877652211 222
Q ss_pred CccchhhhcCC--CCCC-------EEEEecCCcccCCcC
Q psy3452 81 EHGPLCKEYDI--KGYP-------TFQYFHYFNKQSPSP 110 (116)
Q Consensus 81 ~~~~~~~~~~v--~~~P-------t~~~~~~g~~~~~~~ 110 (116)
.+.++.++||+ ...| ++++.+.++++.-..
T Consensus 109 r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 109 RDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 45566666663 4444 566666555543333
No 386
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=39.38 E-value=26 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.091 Sum_probs=20.9
Q ss_pred chhhhcCCC-CCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDIK-GYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v~-~~Pt~~~~~~g~~~~~~~y 111 (116)
..+++|++. +-.++++..+|..++..+|
T Consensus 27 K~~~~l~l~~~~~~l~L~eDGT~VddEey 55 (74)
T smart00266 27 KVCDKLALPDSPVTLVLEEDGTIVDDEEY 55 (74)
T ss_pred HHHHHhCCCCCCcEEEEecCCcEEccHHH
Confidence 356678887 5688888899988766665
No 387
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=38.98 E-value=26 Score=19.61 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=19.8
Q ss_pred chhhhcCC-CCCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDI-KGYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v-~~~Pt~~~~~~g~~~~~~~y 111 (116)
..+++|++ ..-.++++..+|..++..+|
T Consensus 29 K~~~~l~l~~~~~~lvL~eDGTeVddEeY 57 (78)
T cd01615 29 KACEKLKLPSAPVTLVLEEDGTEVDDEEY 57 (78)
T ss_pred HHHHHcCCCCCCeEEEEeCCCcEEccHHH
Confidence 35667888 45567777788887766665
No 388
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=38.66 E-value=47 Score=22.12 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=46.3
Q ss_pred EEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc----cccccCCccccceEEEcCceeeeceeeEEEEec
Q psy3452 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG----PLCKEYDIKGYPTFHHLALTIMIIRLALAAIDC 79 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~ 79 (116)
+..|-...|+.|......+.. +...+-+.-|+...++ .-|.+.+|.- ..|.-..+..
T Consensus 112 lalFvkd~C~~C~~~~~~l~a------~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp-------------~~V~~~~ITL 172 (200)
T TIGR03759 112 LALFVKDDCVACDARVQRLLA------DNAPLDLYLVGSQGDDERIRQWANRHQIDP-------------AKVRSRQITL 172 (200)
T ss_pred EEEEeCCCChHHHHHHHHHhc------CCCceeEEEecCCCCHHHHHHHHHHcCCCH-------------HHeecCeeEE
Confidence 456777999999987766532 2225666666644433 3345555543 3455555544
Q ss_pred cCccchhhhcCC-CCCCEEEEecCC
Q psy3452 80 TEHGPLCKEYDI-KGYPTFQYFHYF 103 (116)
Q Consensus 80 ~~~~~~~~~~~v-~~~Pt~~~~~~g 103 (116)
.-+.-.-..+++ ...|.++.-.+|
T Consensus 173 NHD~G~w~~lg~~g~lP~~l~q~~g 197 (200)
T TIGR03759 173 NHDNGRWLQLGLQGQLPAVVQQVNG 197 (200)
T ss_pred ecCcchHHHccCCCCCCEEEEecCC
Confidence 434444456775 456877654443
No 389
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=38.37 E-value=89 Score=20.08 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE 44 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 44 (116)
+++|-=.|+-|+.--+. ..++.+.++|++.+ +.++..-|.+
T Consensus 27 VlLIVNtASkCGfTpQY-egLe~Ly~ky~~~G-f~VLgFPcNQ 67 (162)
T COG0386 27 VLLIVNTASKCGFTPQY-EGLEALYKKYKDKG-FEVLGFPCNQ 67 (162)
T ss_pred EEEEEEcccccCCcHhH-HHHHHHHHHHhhCC-cEEEeccccc
Confidence 56666679999986654 37888899998875 7777776664
No 390
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=36.78 E-value=28 Score=21.58 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=13.5
Q ss_pred CCCCCEEEEecCCcc---cCCcCCCC
Q psy3452 91 IKGYPTFQYFHYFNK---QSPSPYHN 113 (116)
Q Consensus 91 v~~~Pt~~~~~~g~~---~~~~~y~g 113 (116)
..+-|++.||++|+. +.....+|
T Consensus 93 pPSSPS~ALfKdGelvh~ieRh~IEG 118 (136)
T PF06491_consen 93 PPSSPSIALFKDGELVHFIERHHIEG 118 (136)
T ss_dssp ---SSEEEEEETTEEEEEE-GGGTTT
T ss_pred CCCCchheeeeCCEEEEEeehhhcCC
Confidence 356799999999864 34555555
No 391
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.81 E-value=31 Score=20.40 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=15.8
Q ss_pred cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccc
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPL 48 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 48 (116)
.|-|+...+....+... . .+.+..+|+-+++++
T Consensus 27 ~P~CGFS~~~vqiL~~~----g---~v~~~~vnVL~d~ei 59 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----G---VVDFAYVDVLQDPEI 59 (105)
T ss_pred CCCCCccHHHHHHHHHc----C---CcceeEEeeccCHHH
Confidence 45566655544444321 1 144555555555444
No 392
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=33.72 E-value=28 Score=17.17 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=13.0
Q ss_pred CCHHHHhhhHHHHHHHHHhc
Q psy3452 11 GCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 11 wC~~C~~~~~~~~~~~~~~~ 30 (116)
+|.||+.=.+.+.++.+.+.
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 68899977777776666553
No 393
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=33.55 E-value=43 Score=17.51 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=12.6
Q ss_pred cCCCHHHHhhhHHHHH
Q psy3452 9 SPGCGYCKKAKPEYVK 24 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~ 24 (116)
.++|+.|.+.+-.++.
T Consensus 13 ~s~sp~~~~v~~~L~~ 28 (72)
T cd03054 13 PSLSPECLKVETYLRM 28 (72)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4699999998877664
No 394
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=33.44 E-value=32 Score=21.39 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=10.9
Q ss_pred cCCCHHHHhhhHHHH
Q psy3452 9 SPGCGYCKKAKPEYV 23 (116)
Q Consensus 9 a~wC~~C~~~~~~~~ 23 (116)
.+-|+.|++.+.++-
T Consensus 85 ~sPCG~CRQ~i~Ef~ 99 (134)
T COG0295 85 VSPCGACRQVLAEFC 99 (134)
T ss_pred cCCcHHHHHHHHHhc
Confidence 467999998775543
No 395
>PRK12411 cytidine deaminase; Provisional
Probab=33.33 E-value=26 Score=21.53 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=10.5
Q ss_pred CCCHHHHhhhHHH
Q psy3452 10 PGCGYCKKAKPEY 22 (116)
Q Consensus 10 ~wC~~C~~~~~~~ 22 (116)
+-|+.|++++.++
T Consensus 84 sPCG~CRQ~l~Ef 96 (132)
T PRK12411 84 PPCGACRQVMVEL 96 (132)
T ss_pred CCchhHHHHHHHh
Confidence 6799999986555
No 396
>KOG0855|consensus
Probab=33.23 E-value=95 Score=20.34 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=23.0
Q ss_pred eEEEEEE-cCCCHHHHh----hhHHHHHHHHHhccCcceEEEEEeCC-CcccccccCC
Q psy3452 2 FYSILFY-SPGCGYCKK----AKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYD 53 (116)
Q Consensus 2 ~v~v~F~-a~wC~~C~~----~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~ 53 (116)
+|+++|| +..-|-|.+ ++..++++.+... .+.-+..|.. ..+.++++++
T Consensus 92 ~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~a---eV~GlS~D~s~sqKaF~sKqn 146 (211)
T KOG0855|consen 92 PVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGA---EVIGLSGDDSASQKAFASKQN 146 (211)
T ss_pred cEEEEEeccCCCCCcccccccccccHHHHhhcCc---eEEeeccCchHHHHHhhhhcc
Confidence 5777777 333344544 3445555544432 2333333322 3345555543
No 397
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.47 E-value=31 Score=19.33 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=18.6
Q ss_pred chhhhcCCC-CCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDIK-GYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v~-~~Pt~~~~~~g~~~~~~~y 111 (116)
.-++.+++. ...++++..+|..++..+|
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~VddEey 57 (78)
T PF02017_consen 29 KACDKLQLPEEPVRLVLEEDGTEVDDEEY 57 (78)
T ss_dssp HHHHHHT-SSSTCEEEETTTTCBESSCHH
T ss_pred HHHHHhCCCCcCcEEEEeCCCcEEccHHH
Confidence 355678888 5566777788887765554
No 398
>KOG0854|consensus
Probab=32.36 E-value=83 Score=20.79 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=31.1
Q ss_pred EEEEEE--cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452 3 YSILFY--SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE 44 (116)
Q Consensus 3 v~v~F~--a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 44 (116)
|.|.|. ++--+-|......+.+++-++..+ +++.+...|+.
T Consensus 34 W~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR-nvKlialS~d~ 76 (224)
T KOG0854|consen 34 WGVLFSHPADFTPVCTTELGRFAKLAPEFDKR-NVKLIALSVDD 76 (224)
T ss_pred eEEEecCcccCCcchhHHHHHHHhhChhhhhc-CceEEEeehhh
Confidence 456666 556688999999999998888776 57777777764
No 399
>PRK05578 cytidine deaminase; Validated
Probab=32.26 E-value=29 Score=21.32 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=11.4
Q ss_pred cCCCHHHHhhhHHHH
Q psy3452 9 SPGCGYCKKAKPEYV 23 (116)
Q Consensus 9 a~wC~~C~~~~~~~~ 23 (116)
.+-|+.|++++.++.
T Consensus 83 ~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 83 LSPCGRCRQVLAEFG 97 (131)
T ss_pred cCccHHHHHHHHHhC
Confidence 468999999876553
No 400
>PLN02182 cytidine deaminase
Probab=31.86 E-value=24 Score=25.45 Aligned_cols=14 Identities=29% Similarity=0.531 Sum_probs=11.6
Q ss_pred cCCCHHHHhhhHHH
Q psy3452 9 SPGCGYCKKAKPEY 22 (116)
Q Consensus 9 a~wC~~C~~~~~~~ 22 (116)
.+-||+|++++.++
T Consensus 129 ~sPCG~CRQfm~Ef 142 (339)
T PLN02182 129 GTPCGHCLQFLMEM 142 (339)
T ss_pred cCCCchhHHHHHHh
Confidence 57899999987666
No 401
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=31.76 E-value=35 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=11.8
Q ss_pred hhcCCCCCCEEEEe
Q psy3452 87 KEYDIKGYPTFQYF 100 (116)
Q Consensus 87 ~~~~v~~~Pt~~~~ 100 (116)
-.+||+.+|++++=
T Consensus 77 w~lgi~k~PAVVfD 90 (114)
T PF07511_consen 77 WSLGITKYPAVVFD 90 (114)
T ss_pred HHhCccccCEEEEc
Confidence 36899999999875
No 402
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=31.56 E-value=16 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=17.3
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
++=.||.-||..|. .|.+.+-.....
T Consensus 8 ~~gk~~iyWCe~cN--lPl~~~~c~~cg 33 (202)
T COG5270 8 VLGKFPIYWCEKCN--LPLLGRRCSVCG 33 (202)
T ss_pred eecccceeehhhCC--CccccccccccC
Confidence 44578999999996 355555455544
No 403
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=30.56 E-value=54 Score=18.86 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=14.5
Q ss_pred CCCCEEEEecCCcccCCcCCCCCCC
Q psy3452 92 KGYPTFQYFHYFNKQSPSPYHNDYT 116 (116)
Q Consensus 92 ~~~Pt~~~~~~g~~~~~~~y~g~~~ 116 (116)
.+-|.+++-+++ ......|.|++|
T Consensus 62 ~~~~~i~frp~~-~~~~~~y~G~~t 85 (91)
T cd03070 62 PGDNIIYFPPGH-NAPDMVYLGSLT 85 (91)
T ss_pred CCCCeEEECCCC-CCCceEEccCCC
Confidence 444555554443 444589999875
No 404
>KOG0833|consensus
Probab=30.41 E-value=40 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=13.8
Q ss_pred EcCCCHHHHhhhHHHHH
Q psy3452 8 YSPGCGYCKKAKPEYVK 24 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~ 24 (116)
..+-|+.|+++..++..
T Consensus 101 f~tPCG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGN 117 (173)
T ss_pred cCCCcHHHHHHHHHHhh
Confidence 46789999998877765
No 405
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=30.10 E-value=40 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=11.2
Q ss_pred hcCCCCCCEEEEe
Q psy3452 88 EYDIKGYPTFQYF 100 (116)
Q Consensus 88 ~~~v~~~Pt~~~~ 100 (116)
.+||+++|++++=
T Consensus 79 ~lGi~k~PAVV~D 91 (113)
T TIGR03757 79 QLGVTKIPAVVVD 91 (113)
T ss_pred HcCCccCCEEEEc
Confidence 6899999999875
No 406
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=29.81 E-value=58 Score=19.27 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=12.1
Q ss_pred cCCCHHHHhhhHHHHH
Q psy3452 9 SPGCGYCKKAKPEYVK 24 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~ 24 (116)
++.|+.|.+-..++.+
T Consensus 31 ~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccChHHHHHHHHHHH
Confidence 5789999987666544
No 407
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=29.72 E-value=42 Score=18.91 Aligned_cols=28 Identities=11% Similarity=0.053 Sum_probs=19.9
Q ss_pred chhhhcCCC---CCCEEEEecCCcccCCcCC
Q psy3452 84 PLCKEYDIK---GYPTFQYFHYFNKQSPSPY 111 (116)
Q Consensus 84 ~~~~~~~v~---~~Pt~~~~~~g~~~~~~~y 111 (116)
.-++++++. .-.++++..+|..++..+|
T Consensus 29 K~~~~l~l~~~~~~~~lvL~eDGT~VddEey 59 (80)
T cd06536 29 KACESLGFDSSSAPITLVLAEDGTIVEDEDY 59 (80)
T ss_pred HHHHHhCCCCCCCceEEEEecCCcEEccHHH
Confidence 345678886 3478888899988766665
No 408
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=29.44 E-value=18 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=0.0
Q ss_pred CccchhhhcCCCCCCEEEEecCC
Q psy3452 81 EHGPLCKEYDIKGYPTFQYFHYF 103 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt~~~~~~g 103 (116)
....+.+.++++++|+.++-|.+
T Consensus 7 ~s~~~~~~~~v~g~P~~~vNR~~ 29 (184)
T PF11551_consen 7 QSSALMKQWGVSGYPSAMVNRKG 29 (184)
T ss_dssp -----------------------
T ss_pred hhhcccccccCCCCCeEEEECCC
Confidence 34456666777777777666554
No 409
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.59 E-value=1.6e+02 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=23.3
Q ss_pred cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
-.|||.|+.....++-..++.++ .+-.++-...
T Consensus 172 VNWcP~~~TAiSd~EVe~~e~~g--~L~~i~y~l~ 204 (877)
T COG0525 172 VNWCPKCRTAISDIEVEYKEVEG--KLYYIKYPLA 204 (877)
T ss_pred ccCCCccccchhhhhhccceeee--eEEEEEEecC
Confidence 36999999888888776666665 5555555444
No 410
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=27.66 E-value=51 Score=18.92 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.4
Q ss_pred EeccCccchhhhcC-CCCCCEEEEecC
Q psy3452 77 IDCTEHGPLCKEYD-IKGYPTFQYFHY 102 (116)
Q Consensus 77 v~~~~~~~~~~~~~-v~~~Pt~~~~~~ 102 (116)
+-+.++.++.+++. +.+.|.+++-++
T Consensus 68 ~VaT~D~~Lr~~lr~~~GvPvi~l~~~ 94 (101)
T PF04900_consen 68 IVATQDKELRRRLRKIPGVPVIYLRRN 94 (101)
T ss_pred EEEecCHHHHHHHhcCCCCCEEEEECC
Confidence 44578999999988 999999998843
No 411
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.64 E-value=65 Score=19.37 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-cccccCCc--cccceEEEcCc
Q psy3452 11 GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-PLCKEYDI--KGYPTFHHLAL 65 (116)
Q Consensus 11 wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v--~~~Pt~~~~~~ 65 (116)
.|++|..+...+.-.-. +.+ .+.+..|+...-. .+.+..+- ++.|++++=.+
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l~~--~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-LRE--RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChh-hhh--cccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 49999988776654322 222 5777777766543 22333322 46777765444
No 412
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.12 E-value=1.1e+02 Score=19.25 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.0
Q ss_pred EEEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452 6 LFYSPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
.|+-.-||.|--..+.++++.+.++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 3567789999999999999988875
No 413
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=26.40 E-value=78 Score=17.68 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCCHHHHhhhHHHHHHHHHhc
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~ 30 (116)
..|+.|+......+.+...+.
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~ 57 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLK 57 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHH
Confidence 479999988866666655554
No 414
>PLN02402 cytidine deaminase
Probab=25.99 E-value=78 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEcCCCHHHHhhhHHH
Q psy3452 6 LFYSPGCGYCKKAKPEY 22 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~ 22 (116)
-...+-|+.|++++.++
T Consensus 98 aV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 98 AVSAAPCGHCRQFFQEI 114 (303)
T ss_pred EEEeCCCcccHHHHHHh
Confidence 34568999999987665
No 415
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=25.78 E-value=45 Score=17.08 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=11.7
Q ss_pred CccchhhhcCCCCCCE
Q psy3452 81 EHGPLCKEYDIKGYPT 96 (116)
Q Consensus 81 ~~~~~~~~~~v~~~Pt 96 (116)
.-..+|+++||..+|.
T Consensus 31 ~LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 31 TLKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHHHHHcCCCCCCc
Confidence 4566788888888874
No 416
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.74 E-value=1e+02 Score=15.49 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=20.5
Q ss_pred cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
.=.|+.|.+ .+++..+.++ .+.-+.+|.....
T Consensus 6 ~m~C~~C~~---~v~~~l~~~~---GV~~v~vd~~~~~ 37 (62)
T PF00403_consen 6 GMTCEGCAK---KVEKALSKLP---GVKSVKVDLETKT 37 (62)
T ss_dssp STTSHHHHH---HHHHHHHTST---TEEEEEEETTTTE
T ss_pred CcccHHHHH---HHHHHHhcCC---CCcEEEEECCCCE
Confidence 457888876 4455555555 4777777776654
No 417
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=25.06 E-value=92 Score=16.22 Aligned_cols=20 Identities=5% Similarity=0.012 Sum_probs=15.2
Q ss_pred EEEcCCCHHHHhhhHHHHHH
Q psy3452 6 LFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~ 25 (116)
.++.+.|+.|.+.+-.+++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~ 22 (74)
T cd03058 3 LLGAWASPFVLRVRIALALK 22 (74)
T ss_pred EEECCCCchHHHHHHHHHHc
Confidence 46678899999987666653
No 418
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=24.93 E-value=1.9e+02 Score=18.30 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=31.0
Q ss_pred EEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCC
Q psy3452 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT 43 (116)
Q Consensus 3 v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 43 (116)
+.+.++++..+-|.-+...++.+++.+.+. .+.+-.+++.
T Consensus 130 l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~-~v~i~~~~~~ 169 (171)
T PF07700_consen 130 LTLHYRSPRPGLCPYVIGLIRGAAKHFFEL-DVEIEHVECM 169 (171)
T ss_dssp EEEEEEESSSSTHHHHHHHHHHHHHHTTEE-EEEEEEEECC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHHhCCC-CeEEEEeccc
Confidence 467788999999999999999999999863 3555555443
No 419
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=24.42 E-value=1.5e+02 Score=16.91 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=21.0
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCccc
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP 47 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 47 (116)
|.+.+.--++....=+++...+... .+.+-.+|++.+++
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k-~I~f~eiDI~~d~~ 43 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAK-KIEFEEVDISMNEE 43 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHC-CCceEEEecCCCHH
Confidence 3334433444444334444444443 58888888876654
No 420
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=24.41 E-value=85 Score=16.27 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=13.2
Q ss_pred EEEcCCCHHHHhhhHHHHHH
Q psy3452 6 LFYSPGCGYCKKAKPEYVKA 25 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~ 25 (116)
.++.+.|+.|++.+-.+++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~ 22 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADA 22 (72)
T ss_pred EEEEcCcchHHHHHHHHHHC
Confidence 34556788888777666643
No 421
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.25 E-value=54 Score=19.49 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=16.1
Q ss_pred cCccchhhhcCCCCCCEEE
Q psy3452 80 TEHGPLCKEYDIKGYPTFQ 98 (116)
Q Consensus 80 ~~~~~~~~~~~v~~~Pt~~ 98 (116)
.+..+++++++++.||.++
T Consensus 80 ~sgddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 80 VSGDDLAERLGLRHYPVLI 98 (105)
T ss_pred CCHHHHHHHhCCCcccEEE
Confidence 3567899999999999875
No 422
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=23.94 E-value=50 Score=20.75 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCccchhhhcCCCCCCEEE
Q psy3452 80 TEHGPLCKEYDIKGYPTFQ 98 (116)
Q Consensus 80 ~~~~~~~~~~~v~~~Pt~~ 98 (116)
.+..+++++++++.||-++
T Consensus 118 ~sgddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 118 VSGDDLARRLGLSHYPVLI 136 (142)
T ss_pred CCHHHHHHHhCCCcccEEe
Confidence 4567899999999999875
No 423
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=23.73 E-value=1.3e+02 Score=15.86 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=10.1
Q ss_pred CCHHHHhhhHHHHH
Q psy3452 11 GCGYCKKAKPEYVK 24 (116)
Q Consensus 11 wC~~C~~~~~~~~~ 24 (116)
+|+.|.+..-.++.
T Consensus 16 ~sp~~~~v~~~L~~ 29 (75)
T cd03080 16 LSPFCLKVETFLRM 29 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 67888887666554
No 424
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=23.71 E-value=58 Score=17.92 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=11.4
Q ss_pred CCCEEEEecCCcccC
Q psy3452 93 GYPTFQYFHYFNKQS 107 (116)
Q Consensus 93 ~~Pt~~~~~~g~~~~ 107 (116)
.-|++.++++|..+.
T Consensus 11 P~Pti~W~kng~~l~ 25 (79)
T cd05855 11 PKPTLQWFHEGAILN 25 (79)
T ss_pred CCCceEEEECCEECC
Confidence 358899999987653
No 425
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=23.41 E-value=2e+02 Score=18.19 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=13.7
Q ss_pred cCCCHHHHhhhHHHHHHHHHhc
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
-+-|..|+ ..+..+++++.
T Consensus 108 r~vC~~C~---~~i~~~a~~lG 126 (146)
T PF14437_consen 108 RDVCGYCG---GDIPSMAEKLG 126 (146)
T ss_pred cccchHHH---HHHHHHHHHcC
Confidence 78899999 45566666664
No 426
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=23.31 E-value=62 Score=17.59 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=16.3
Q ss_pred hhhcCCCCCCEEEEecCCcccCCc
Q psy3452 86 CKEYDIKGYPTFQYFHYFNKQSPS 109 (116)
Q Consensus 86 ~~~~~v~~~Pt~~~~~~g~~~~~~ 109 (116)
.++|++. |+.++-.+|.+|+++
T Consensus 36 ~~kfg~~--~~~v~~~dgaeIdDI 57 (69)
T PF11834_consen 36 SEKFGFS--ATKVLNEDGAEIDDI 57 (69)
T ss_pred HHHhCCC--ceEEEcCCCCEEeEE
Confidence 3478884 898888888777554
No 427
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=23.26 E-value=57 Score=19.06 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHhhhHHHHHHHHH
Q psy3452 6 LFYSPGCGYCKKAKPEYVKAAEV 28 (116)
Q Consensus 6 ~F~a~wC~~C~~~~~~~~~~~~~ 28 (116)
.||-+|..+-++....+++++.+
T Consensus 31 k~ylswakpykrahesieklsnk 53 (126)
T PF13120_consen 31 KFYLSWAKPYKRAHESIEKLSNK 53 (126)
T ss_pred eeeeeecChhhHHHhHHHHhccc
Confidence 36889999999888888887654
No 428
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=23.01 E-value=3e+02 Score=19.96 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=41.1
Q ss_pred cCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcccccccCCccccceEEEcCceeeeceeeEEEEeccCccchhhh
Q psy3452 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKE 88 (116)
Q Consensus 9 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~v~f~~~~~~~v~~~~~~~~~~~ 88 (116)
..|-++=+.....+..+++.......+.+...+-+-. ..-.+... .+|.+ +.++.+....+.
T Consensus 36 ~~W~~~l~~aq~~f~~~~~aIarfe~V~l~V~~~~~~-~a~a~l~~---------------~~V~~--~~i~~nDtW~RD 97 (346)
T COG2957 36 DDWRGHLKPAQQAFAALAKAIARFERVLLCVPDDDLE-DARARLDD---------------ANVEI--VRIDTNDTWLRD 97 (346)
T ss_pred cchhhhHHHHHHHHHHHHHHHhccceEEEEechHHHH-HHHhhcCC---------------CceEE--EEccCCCcHhhc
Confidence 4566666677777888877776543444433322211 11111111 12333 344556677776
Q ss_pred cCCCCCCEEEEecCCcc
Q psy3452 89 YDIKGYPTFQYFHYFNK 105 (116)
Q Consensus 89 ~~v~~~Pt~~~~~~g~~ 105 (116)
+| |++++-.+|+.
T Consensus 98 tG----P~~~i~~~g~~ 110 (346)
T COG2957 98 TG----PTIVINDKGDL 110 (346)
T ss_pred cC----CcEEecCCCcE
Confidence 65 89888877753
No 429
>KOG1651|consensus
Probab=22.80 E-value=2.3e+02 Score=18.46 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCC
Q psy3452 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE 44 (116)
Q Consensus 2 ~v~v~F~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 44 (116)
+++|-=-||.|+.-.+--..+..+.++|++.+ +.++.--|.+
T Consensus 36 V~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQ 77 (171)
T KOG1651|consen 36 VVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQ 77 (171)
T ss_pred EEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEecccc
Confidence 34555569999998866678999999998875 6777666653
No 430
>KOG2852|consensus
Probab=22.47 E-value=50 Score=23.74 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=20.0
Q ss_pred EEcCCCHHH--HhhhHH----HHHHHHHhccCcceEEEEE
Q psy3452 7 FYSPGCGYC--KKAKPE----YVKAAEVLKDNHKVALAAI 40 (116)
Q Consensus 7 F~a~wC~~C--~~~~~~----~~~~~~~~~~~~~~~~~~v 40 (116)
|-|.||.+. +.+.+. -++++++|.+..+..+..+
T Consensus 61 fLa~wc~~s~~~~La~lsfkLh~~LsdeydGvnnwgYRal 100 (380)
T KOG2852|consen 61 FLAKWCQPSIIQPLATLSFKLHEELSDEYDGVNNWGYRAL 100 (380)
T ss_pred hhHhhhCCcccchhhHHHHHHHHHHHHhhcCcccccceee
Confidence 457899886 444443 4666777766544443333
No 431
>PRK06848 hypothetical protein; Validated
Probab=21.50 E-value=65 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=10.5
Q ss_pred cCCCHHHHhhhHHH
Q psy3452 9 SPGCGYCKKAKPEY 22 (116)
Q Consensus 9 a~wC~~C~~~~~~~ 22 (116)
.+-|+.|++.+.++
T Consensus 94 ~~PCG~CRQvl~E~ 107 (139)
T PRK06848 94 VSPCGACRELISDY 107 (139)
T ss_pred cCCChhhHHHHHHh
Confidence 46799999986554
No 432
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=20.82 E-value=1.1e+02 Score=20.44 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCHHHHhhhHHHHHHHHHhc
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~ 30 (116)
.-|+.|++....++.++..+-
T Consensus 29 ~~C~~Cr~~~~~~e~~~~~l~ 49 (215)
T TIGR02451 29 ALCPECRARIAAFEALGGSLL 49 (215)
T ss_pred HHCHHHHHHHHHHHHHHHHHh
Confidence 459999999999888877664
No 433
>PHA02513 V1 structural protein V1; Reviewed
Probab=20.77 E-value=48 Score=19.96 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.5
Q ss_pred EEcCCCHHHHhhhHHHHHHHHHhc
Q psy3452 7 FYSPGCGYCKKAKPEYVKAAEVLK 30 (116)
Q Consensus 7 F~a~wC~~C~~~~~~~~~~~~~~~ 30 (116)
||.+|.+.-.+....+-++++..+
T Consensus 34 f~qtwdgnii~sa~~fveva~~np 57 (135)
T PHA02513 34 FYQTWDGNIISSARRFVEVAKANP 57 (135)
T ss_pred HHHhcCchHHHHHHHHHHHHhcCC
Confidence 789999998888878888777655
No 434
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=20.76 E-value=1.9e+02 Score=16.84 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=22.3
Q ss_pred EcCCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc
Q psy3452 8 YSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG 46 (116)
Q Consensus 8 ~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 46 (116)
|.+.+....++...=+++..-+..+ +|.+-.+|+..++
T Consensus 6 y~ss~sg~~~ikk~q~~v~~iL~a~-kI~fe~vDIa~~e 43 (99)
T PF04908_consen 6 YISSISGSREIKKRQQRVLMILEAK-KIPFEEVDIAMDE 43 (99)
T ss_dssp EE-SS-SSHHHHHHHHHHHHHHHHT-T--EEEEETTT-H
T ss_pred EEecccCCHHHHHHHHHHHHHHHHc-CCCcEEEeCcCCH
Confidence 3344555666666666666666665 6999999988765
No 435
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=20.35 E-value=2e+02 Score=16.77 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.0
Q ss_pred EEEEEcCCCHHHHhhh-HHHHH
Q psy3452 4 SILFYSPGCGYCKKAK-PEYVK 24 (116)
Q Consensus 4 ~v~F~a~wC~~C~~~~-~~~~~ 24 (116)
+-.||-+-||.|+++. ..+..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 4468899999999874 33443
No 436
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.18 E-value=67 Score=23.81 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhccCc-ceEEEEEeCCCcccccccC
Q psy3452 19 KPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEY 52 (116)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~ 52 (116)
.+.++++.+.....+ .+.++.-+..+...+.+.|
T Consensus 366 ~~~v~~l~e~a~~~g~~v~iis~~~e~G~qL~~~f 400 (411)
T PRK04011 366 EDIIEELSELAEQSGTKVEVISTDTEEGEQLLKAF 400 (411)
T ss_pred hhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcC
Confidence 345666665555443 6666665555555554444
No 437
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=20.17 E-value=65 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.8
Q ss_pred CCEEEEecCCccc
Q psy3452 94 YPTFQYFHYFNKQ 106 (116)
Q Consensus 94 ~Pt~~~~~~g~~~ 106 (116)
-|++.++++|..+
T Consensus 12 ~P~v~W~kdg~~l 24 (67)
T cd05863 12 PPEFQWYKDGKLI 24 (67)
T ss_pred CCEEEEEECCEEC
Confidence 4666666666544
No 438
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.11 E-value=1.9e+02 Score=16.50 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=25.8
Q ss_pred CCCHHHHhhhHHHHHHHHHhccCcceEEEEEeCCCcc-cccccCCccccceEE
Q psy3452 10 PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHG-PLCKEYDIKGYPTFH 61 (116)
Q Consensus 10 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~ 61 (116)
..|+.|++.+-.+.+- +- .+.+..+|....+ .+.+..-...+|++.
T Consensus 20 g~cpf~~rvrl~L~eK-----gi-~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GV-VFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCChhHHHHHHHHHHC-----CC-ceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 5788888877666542 21 4555666655533 333333334677665
Done!