RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3452
(116 letters)
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 85.1 bits (211), Expect = 9e-23
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPT 59
+ FY+P CG+CK+ PEY K A LKDN +A+A ID T L ++D+ GYPT
Sbjct: 39 LEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT 94
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 84.3 bits (209), Expect = 1e-22
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPT 59
+ FY+P CG+CK PEY KAA LK ++ LA +D TE L ++Y ++GYPT
Sbjct: 29 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT 84
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 84.8 bits (210), Expect = 1e-22
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
FY+P CG+C++ PE+ KAA LKD V + A++ +H L +Y ++G+PT
Sbjct: 42 FYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPT 92
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 82.8 bits (205), Expect = 7e-22
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+P CG+CK +PE+ AA +K+ KV LAA+D T + L Y I+G+PT
Sbjct: 32 FYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 81.2 bits (201), Expect = 2e-21
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+P CG+CK P + + ++ V +A +DCT +C +Y ++GYPT
Sbjct: 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 81.2 bits (201), Expect = 2e-21
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
I FY+P C C+ +PE+ AE +D +V +A +D TE L + I PT +H
Sbjct: 27 IEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQPGLSGRFIINALPTIYH 83
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 81.3 bits (201), Expect = 2e-21
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK+ +P Y + K + +A +D T + +Y ++G+PT
Sbjct: 30 IEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 83.3 bits (205), Expect = 1e-20
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
FY+P CG+CKK + KAA+ L +VA D ++ LC +YD+ G+PT
Sbjct: 42 FYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94
Score = 28.6 bits (63), Expect = 0.49
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 4 SILFYSPGCGYCKKAK---PEYVKAAEVLKDNHKVALAAIDCTEHGPL 48
FYS K+ P Y K E+ K KV + +
Sbjct: 189 KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLV 236
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 82.2 bits (203), Expect = 1e-20
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+P CG+CK+ PEY K A +LKD + + +A ID T L +D+ GYPT
Sbjct: 39 FYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93
Score = 69.1 bits (169), Expect = 1e-15
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ FY+P CG+CKK PEY KAA+ L + LA +D T L K +D+ GYPT
Sbjct: 152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL 208
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive
methylation; HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 79.3 bits (195), Expect = 2e-19
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
F++ CG+C P + AE +K + LAA+DC E + +C++++I G+PT
Sbjct: 37 FFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92
Score = 39.2 bits (91), Expect = 7e-05
Identities = 4/56 (7%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
++F G ++ + + V + +++ + +P+
Sbjct: 162 LIFEXGGSYLAREVALDLSQHKGV--------AVRRVLNTEANVVRKFGVTDFPSC 209
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 13/89 (14%)
Query: 27 EVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLC 86
N++ LA I L +E +AL + + +
Sbjct: 150 GFFARNNEEYLALIFEXGGSYLARE-----------VALDLSQHKGVAVRRVLNTEANVV 198
Query: 87 KEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115
+++ + +P+ F S S
Sbjct: 199 RKFGVTDFPSCYLL--FRNGSVSRVPVLM 225
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae}
SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 80.7 bits (198), Expect = 3e-19
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P CG+CK PEYVKAAE L + + LA IDCTE+ LC E++I G+P+
Sbjct: 36 AEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPS 89
Score = 65.6 bits (159), Expect = 5e-14
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+L+Y+P CG+CK+ P Y + A+ + V +A +D TE+ + I+GYPT
Sbjct: 381 VLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN--DVRGVVIEGYPTI 435
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 75.1 bits (185), Expect = 6e-19
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLK---DNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+L+Y P + A + + ++ A ID ++ + + + G+PT
Sbjct: 38 VLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTM 96
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 78.5 bits (193), Expect = 1e-18
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH----KVALAAIDCTEHGPLCKEYDIKGYPT 59
+ FY+ C + + P + +A++V+K+ +V A +DC +H + + Y I YPT
Sbjct: 27 VNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 76.8 bits (188), Expect = 6e-18
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
+ F++P CG+ K+ PEY AA LK V LA +DCT + C +Y + GYPT
Sbjct: 26 VEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Score = 71.8 bits (175), Expect = 4e-16
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK +P+Y + E L + + +A +D T + + Y+++G+PT
Sbjct: 375 IEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTI 429
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 76.5 bits (187), Expect = 1e-17
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTE--HGPLCKEYDIKGYPT 59
F++ CG+ P + + A +KD + LA +DC E + +C+E++I G+PT
Sbjct: 37 FFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 75.8 bits (185), Expect = 2e-17
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 31/112 (27%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
+LFY+ GCG C++ + K A LK H I
Sbjct: 47 VLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI------------------------ 82
Query: 65 LTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116
AA++C LC++YDI P +F+ + + +
Sbjct: 83 -------ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSS 127
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 72.8 bits (178), Expect = 1e-16
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ FY+P CG+CK+ P + K E KD+ + +A +D T + + + +PT
Sbjct: 272 VEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN--EVEAVKVHSFPTL 325
Score = 50.1 bits (119), Expect = 1e-08
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+LF + AAE K D T++ + + + +K
Sbjct: 140 LLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 194
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 68.5 bits (168), Expect = 2e-16
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
FY+P CG C+ PE+ A ++K KV +DC + C++ IK YP+
Sbjct: 28 FYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPS 78
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 72.5 bits (177), Expect = 2e-16
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
+ FYSPG + P + + A+ + + + A++C + LC+ + YP+
Sbjct: 138 VNFYSPGSSHSHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSLFI 193
Score = 70.6 bits (172), Expect = 1e-15
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ FY+P G + PE+ A ++K KV +DC + C++ IK YP+
Sbjct: 680 VDFYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK 734
Score = 69.8 bits (170), Expect = 2e-15
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+ F++P + PE KA+ +L ++ + +DCT H LC Y+I+ YPT
Sbjct: 460 VDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPT 512
Score = 65.2 bits (158), Expect = 9e-14
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ FYSP + PE+ + A L + + ++DC ++ C + +++ YP
Sbjct: 568 VDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEI 621
Score = 52.4 bits (125), Expect = 3e-09
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 4 SILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ + C + + + V + +DC LCK D T
Sbjct: 243 GVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTA 299
Score = 43.2 bits (101), Expect = 4e-06
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
L + PE K +LK+ + + DC+ +C + + P+
Sbjct: 354 WLVFFHFGKNENANDPELKKLKTLLKNE-HIQVVRFDCSSAPGICSDLYVF-QPSL 407
Score = 36.3 bits (83), Expect = 0.001
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 57 YPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQSPSPYHNDYT 116
P L + + + DC+ +C + + P+ F + +H
Sbjct: 368 DPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKI 426
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 70.9 bits (173), Expect = 6e-16
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLK------DNHKVALAAIDCTEHGPLCKEYDIKGYP 58
L+Y K A+ ++ VL+ ++ + +D + L K+
Sbjct: 32 CLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEG 91
Query: 59 T 59
+
Sbjct: 92 S 92
Score = 31.2 bits (70), Expect = 0.047
Identities = 7/67 (10%), Positives = 20/67 (29%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
+ F + + A DN +++ ID + L ++
Sbjct: 250 VAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQ 309
Query: 65 LTIMIIR 71
+ ++ +
Sbjct: 310 IGVVNVT 316
Score = 25.8 bits (56), Expect = 3.9
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 5/46 (10%)
Query: 13 GYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
+ + +AAE + K T + K+ +K
Sbjct: 152 SEESEYYKAFEEAAEHFQPYIKFFA-----TFDKGVAKKLSLKMNE 192
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 69.3 bits (169), Expect = 2e-15
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 5 ILFYSPGCGYCKKAK------PEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
+L++ P + AA+VL+D V +D + + K+ +
Sbjct: 35 LLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDAAVAKKLGLTEED 93
Query: 59 T 59
+
Sbjct: 94 S 94
Score = 29.6 bits (66), Expect = 0.20
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY 52
+ F + A+ DN +++ ID + L +
Sbjct: 252 VAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYW 299
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 64.3 bits (157), Expect = 8e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH---KVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK P+Y + + + +V +A +D T + +I+G+PT
Sbjct: 30 IEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---VPDEIQGFPTI 85
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 60.4 bits (146), Expect = 2e-12
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 36/114 (31%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
+ F + K+ E+ + AE + + +A + +++
Sbjct: 27 VKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY------------------- 65
Query: 65 LTIMIIRLALAAIDCTEHGPLCKEY--DIKGYPTFQYFHYFNKQSPSPYHNDYT 116
+ L ++Y D + YP F F + ++P PY
Sbjct: 66 -------------GDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVK 106
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 56.2 bits (135), Expect = 7e-11
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 2 FYSILFYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+F + CGYC P A N + ID +E+ L +++ + G P
Sbjct: 138 IEIWVFVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKI 193
Score = 55.1 bits (132), Expect = 2e-10
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH---KVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ GC C+ A+ + EV+ + K+ L H ++Y + PT
Sbjct: 29 SQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTI 85
Score = 38.9 bits (90), Expect = 1e-04
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 15/93 (16%)
Query: 15 CKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLA 73
+ + ++ +V+ C C AL I
Sbjct: 120 KPQLSEKTLELLQVVDIPIEIWVFVTTSC----GYCPSA----AVMAWDFALANDYITSK 171
Query: 74 LAAIDCTEHGPLCKEYDIKGYPTFQYFHYFNKQ 106
ID +E+ L +++ + G P NK
Sbjct: 172 --VIDASENQDLAEQFQVVGVPKI----VINKG 198
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 45.4 bits (108), Expect = 7e-08
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+F SP C YC A +A + D K+ + ID EY + P
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPA 58
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 44.0 bits (104), Expect = 7e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT----EHGPLCKEYDIKGYPTF 60
Y+ C CK+ + +V K L + T + L K ++ G PT
Sbjct: 38 LYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI 95
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 43.6 bits (103), Expect = 9e-07
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F + C YC + + E ++ + + A ++ ++ L +YD PT
Sbjct: 33 FKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTT 86
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 44.5 bits (105), Expect = 1e-06
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 3 YSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+ + FYSPGC +C P + + A+ + + + A++C + LC+ + YP+
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPS 171
>4euy_A Uncharacterized protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, unknown
function; 2.90A {Bacillus cereus}
Length = 105
Score = 42.3 bits (100), Expect = 1e-06
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ + CG C K VL++ + V I + + Y + PT
Sbjct: 23 LFIKTENCGVCDVMLR---KVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTV 75
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 43.9 bits (103), Expect = 1e-06
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPT 59
F +P C YC A K A K+ ++ E+ +Y++ P
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPK 195
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 42.4 bits (99), Expect = 2e-06
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP------LCKEYDIKGYP 58
++ + C +C+ K + A + + ++C+ +GP C E I YP
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQ--------VPYVECSPNGPGTPQAQECTEAGITSYP 68
Query: 59 TF 60
T+
Sbjct: 69 TW 70
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 42.5 bits (99), Expect = 6e-06
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKD--NHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+P C YC A A N + A++ E+ + +Y + P+
Sbjct: 143 ETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI 200
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 41.9 bits (98), Expect = 6e-06
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ F C + K + L A+ +D + + +DI P+
Sbjct: 28 LRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPST 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F+S +C + P A + N + LA +DC + ++ ++ PT
Sbjct: 31 FYFWSERSQHCLQLTPILESLAA--QYNGQFILAKLDCDAEQMIAAQFGLRAIPT 83
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 40.0 bits (93), Expect = 3e-05
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKG--YPTF 60
++ + CG CK KP++ ++ E+ + +H + ++ E P +++ G P
Sbjct: 51 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE-PKDEDFSPDGGYIPRI 107
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 39.2 bits (92), Expect = 3e-05
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG K KP + +E V +D + + E ++K PTF
Sbjct: 38 FSATWCGPSKMIKPFFHSLSE---KYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 89
Score = 28.4 bits (64), Expect = 0.24
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 46 GPLCKEYDIKGYPTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP K IK P FH L+ ++ + +D + + E ++K PTFQ+F
Sbjct: 44 GP-SKM--IK--PFFHSLSEKYSNVIFLE-----VDVDDCQDVASECEVKSMPTFQFF 91
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 40.4 bits (93), Expect = 3e-05
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 2 FYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
++ + C +C+ K + A + + + T C E I YPT
Sbjct: 199 IGGTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQECTEAGITSYPT 254
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 38.8 bits (91), Expect = 4e-05
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F GCG C + P + + + +D + +I PTF
Sbjct: 28 FTMRGCGPCLRIAPAFSSMSN---KYPQAVFLEVDVHQCQGTAATNNISATPTFQ 79
Score = 27.7 bits (62), Expect = 0.50
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 46 GPLCKEYDIKGYPTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP C I P F ++ + + +D + +I PTFQ+F
Sbjct: 34 GP-CLR--IA--PAFSSMSNKYPQAVFLE-----VDVHQCQGTAATNNISATPTFQFF 81
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A
3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 38.4 bits (90), Expect = 5e-05
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG CK KP + +E V +D + + E ++K PTF
Sbjct: 27 FSATWCGPCKMIKPFFHSLSE---KYSNVIFLEVDVDDCQDVASESEVKSMPTFQ 78
Score = 29.2 bits (66), Expect = 0.16
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 46 GPLCKEYDIKGYPTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP CK IK P FH L+ ++ + +D + + E ++K PTFQ+F
Sbjct: 33 GP-CKM--IK--PFFHSLSEKYSNVIFLE-----VDVDDCQDVASESEVKSMPTFQFF 80
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 37.3 bits (87), Expect = 2e-04
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG CK P + + +E + +D + ++Y+I PTF
Sbjct: 40 FFATWCGPCKTIAPLFKELSE----KYDAIFVKVDVDKLEETARKYNISAMPTFI 90
Score = 28.1 bits (63), Expect = 0.43
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 46 GPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP CK I P F L+ I +D + ++Y+I PTF
Sbjct: 46 GP-CKT--IA--PLFKELSEKYDAI---FVKVDVDKLEETARKYNISAMPTFIAI 92
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.4 bits (87), Expect = 2e-04
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + C C K K + + V L ID H L +++IK PTF
Sbjct: 47 FGAVWCKPCNKIKEYFKNQLN----YYYVTLVDIDVDIHPKLNDQHNIKALPTFE 97
Score = 27.4 bits (61), Expect = 0.81
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 46 GPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
P C + IK F + + L ID H L +++IK PTF+++
Sbjct: 53 KP-CNK--IK--EYFKNQLNYYYVT---LVDIDVDIHPKLNDQHNIKALPTFEFY 99
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 36.2 bits (84), Expect = 3e-04
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CK K + + ++ V+ +ID E+ + + ++I P F
Sbjct: 28 FHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENSEISELFEISAVPYFI 81
Score = 29.2 bits (66), Expect = 0.15
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
F ++ ++ +ID E+ + + ++I P F
Sbjct: 41 QVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIII 83
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo
PSI-2, protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 35.9 bits (83), Expect = 6e-04
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 7 FYSPGCGYCKKAKPEYVK---AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
++ CG CK+ K A+ + ++ E L K+Y + YPT
Sbjct: 34 CFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL 90
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 34.9 bits (81), Expect = 7e-04
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F SP C +C AK + A + D V + I+ E+ EY I PT
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPT 59
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 35.8 bits (82), Expect = 7e-04
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP--LCKEYDIKGYPTF 60
++F PGC YC + E + + + + + P L + PTF
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF 80
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 35.8 bits (83), Expect = 7e-04
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 15/92 (16%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLAL 65
F+ CG+C++ P+ + + + A + ++ K + ++
Sbjct: 38 FWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVR- 95
Query: 66 TIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
D H YDI P
Sbjct: 96 ------------DSKNHTDFKITYDIYATPVL 115
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 35.0 bits (81), Expect = 0.001
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCT--EHGPLCKEYDIKGYPTF 60
+ F+S C YC++ + V + + +A++ E L + Y + G PTF
Sbjct: 24 VYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTF 82
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 34.2 bits (79), Expect = 0.002
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG CK P+ V+ + D V + +D E + EY+I PTF
Sbjct: 27 FFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFV 79
Score = 27.6 bits (62), Expect = 0.58
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 46 GPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP CK I P L+ + + +D E + EY+I PTF +
Sbjct: 33 GP-CKM--IS--PKLVELSTQ-FADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 81
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 34.4 bits (79), Expect = 0.002
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG ++ P Y++ +E + + ID E ++IK PTF
Sbjct: 53 FSARWCGPSRQIAPYYIELSE---NYPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Score = 27.5 bits (61), Expect = 0.81
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 46 GPLCKEYDIKGYPTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
GP ++ I P + L+ +M + ID E ++IK PTF +
Sbjct: 59 GP-SRQ--IA--PYYIELSENYPSLMFLV-----IDVDELSDFSASWEIKATPTFFFL 106
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea}
SCOP: c.47.1.1
Length = 124
Score = 33.9 bits (78), Expect = 0.003
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP-LCKEYDIKGYPTFH 61
++ CG CK P+Y K AE D V +DC + L KE I+ PTF
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFK 96
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 33.8 bits (78), Expect = 0.003
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT-EHGPLCKEYDIKGYPTFH 61
++ CG K P+Y K AE D V +DC E+ L KE I+ PTF
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPTFK 83
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 33.9 bits (78), Expect = 0.003
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 17/96 (17%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEV--LKDNHKVALAAIDCTEHGPLCKEYDIKGYP-TFH 61
+ FY P C C+K + + + + +N + + AI E+ P +
Sbjct: 32 LFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATK-AVYMPQGWI 90
Query: 62 HLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ + YDI+ PT
Sbjct: 91 VG-------------WNKAGDIRTRQLYDIRATPTI 113
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A
{Fasciola hepatica}
Length = 104
Score = 33.4 bits (77), Expect = 0.004
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG C+ P+ A+ + +V A +D ++ +Y + PTF
Sbjct: 26 FFAQWCGPCRNIAPKVEALAK---EIPEVEFAKVDVDQNEEAAAKYSVTAMPTFV 77
Score = 24.5 bits (54), Expect = 7.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 77 IDCTEHGPLCKEYDIKGYPTFQYF 100
+D ++ +Y + PTF +
Sbjct: 56 VDVDQNEEAAAKYSVTAMPTFVFI 79
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 33.5 bits (77), Expect = 0.005
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
FY+ CG CK +P K + D V D E + KE ++ PTF
Sbjct: 37 FYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFV 88
Score = 24.2 bits (53), Expect = 8.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 77 IDCTEHGPLCKEYDIKGYPTFQYF 100
D E + KE ++ PTF
Sbjct: 67 CDVDESPDIAKECEVTAMPTFVLG 90
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 33.6 bits (77), Expect = 0.005
Identities = 3/54 (5%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ +A D + + ++++ +P
Sbjct: 43 SDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT 95
Score = 27.1 bits (60), Expect = 0.92
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFH 101
+A D + + ++++ +P F
Sbjct: 69 DWQVAVADLEQSEAIGDRFNVRRFPATLVFT 99
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 33.1 bits (76), Expect = 0.005
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG CK + K A + V A +D + + + + PTF
Sbjct: 44 FTAVWCGPCKTIERPMEKIAY---EFPTVKFAKVDADNNSEIVSKCRVLQLPTFI 95
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 33.5 bits (77), Expect = 0.006
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 17/96 (17%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLK--DNHKVALAAIDCTEHGPLCKEYDIKGYP-TFH 61
+ +PGC C + + + K+ + +I E K++ + +
Sbjct: 36 LFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKH-RNDFAKEWT 94
Query: 62 HLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ D YD++ PT
Sbjct: 95 NG-------------YDKELVIKNKNLYDLRAIPTL 117
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 32.7 bits (75), Expect = 0.007
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG CK P + + KV +D + + I PTFH
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMPTFH 83
Score = 24.6 bits (54), Expect = 6.1
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 26 AEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHG 83
A++ K + +D T GP CK I P F L+ ++ +D
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGP-CKM--IA--PLFETLSND-YAGKVIFLKVDVDAVA 68
Query: 84 PLCKEYDIKGYPTFQYF 100
+ + I PTF +
Sbjct: 69 AVAEAAGITAMPTFHVY 85
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 32.9 bits (75), Expect = 0.009
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++P C + + A K+ +V+ ++ + ++Y+I PTF
Sbjct: 39 FWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 90
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity,
IGE, fungi, epitope, allergen; 1.41A {Malassezia
sympodialis}
Length = 121
Score = 32.7 bits (75), Expect = 0.009
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG CK P + K ++ KV +D E + +E I+ PTF
Sbjct: 40 FWATWCGPCKMIGPVFEKISDTP-AGDKVGFYKVDVDEQSQIAQEVGIRAMPTFV 93
Score = 25.4 bits (56), Expect = 4.1
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
P F ++ T ++ +D E + +E I+ PTF +F
Sbjct: 53 PVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFF 95
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP:
c.47.1.1
Length = 112
Score = 32.3 bits (74), Expect = 0.010
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F++ CG CK+ P Y + ++ K+ +D E + ++ +I PTF
Sbjct: 33 FFAEWCGPCKRIAPFYEECSK---TYTKMVFIKVDVDEVSEVTEKENITSMPTFK 84
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 32.3 bits (74), Expect = 0.010
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F+ C +CK + K +VA++++D L KE + PT
Sbjct: 26 FHKNLCPHCKNMEKVLDKFGA---RAPQVAISSVDSEARPELMKELGFERVPTL 76
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae}
PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 31.9 bits (73), Expect = 0.013
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
FY+ CG CK P K +E + +D E G + ++ ++ PT
Sbjct: 31 FYATWCGPCKMIAPMIEKFSE---QYPQADFYKLDVDELGDVAQKNEVSAMPTLL 82
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 32.0 bits (73), Expect = 0.014
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG C+ P + A+ + +D E P+ +++ ++ PTF
Sbjct: 41 FTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAMPTFL 92
Score = 25.0 bits (55), Expect = 5.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 77 IDCTEHGPLCKEYDIKGYPTFQYF 100
+D E P+ +++ ++ PTF +
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFM 94
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 32.2 bits (73), Expect = 0.014
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 6/63 (9%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP----LCKEYDIKGYPTF 60
C YC+K + + + Y I P F
Sbjct: 34 FFIGRKTCPYCRKFAGTLSGVVA--ETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF 91
Query: 61 HHL 63
H+
Sbjct: 92 VHI 94
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 32.0 bits (73), Expect = 0.015
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG C+ P + A+ V +D E + ++ I+ PTF
Sbjct: 45 FTASWCGPCRFIAPFFADLAK---KLPNVLFLKVDTDELKSVASDWAIQAMPTFM 96
Score = 24.7 bits (54), Expect = 7.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 58 PTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
P F LA ++ ++ +D E + ++ I+ PTF +
Sbjct: 58 PFFADLAKKLPNVLFLK-----VDTDELKSVASDWAIQAMPTFMFL 98
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 32.0 bits (73), Expect = 0.015
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG C+ P + + A+ +D E + ++Y+++ PTF
Sbjct: 43 FTASWCGPCRFIAPVFAEYAKKFPG---AVFLKVDVDELKEVAEKYNVEAMPTFL 94
Score = 25.1 bits (55), Expect = 4.8
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 77 IDCTEHGPLCKEYDIKGYPTFQYF 100
+D E + ++Y+++ PTF +
Sbjct: 73 VDVDELKEVAEKYNVEAMPTFLFI 96
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 31.9 bits (73), Expect = 0.022
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 14/87 (16%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP-TFHHLALTIMII 70
C +A E + + K N A+ I + IK ++ +
Sbjct: 45 CDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETA-IKKDTLSWDQV------- 96
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ K+Y I PT
Sbjct: 97 -CDFTGLS----SETAKQYAILTLPTN 118
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 31.1 bits (71), Expect = 0.024
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + C CK P + + A+ V +D E + +E++++ PTF
Sbjct: 33 FTASWCPPCKMIAPIFAELAK---KFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84
Score = 24.2 bits (53), Expect = 9.5
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 58 PTFHHLALT---IMIIRLALAAIDCTEHGPLCKEYDIKGYPTFQYF 100
P F LA + ++ +D E + +E++++ PTF +
Sbjct: 46 PIFAELAKKFPNVTFLK-----VDVDELKAVAEEWNVEAMPTFIFL 86
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 31.5 bits (72), Expect = 0.025
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
F + CG C+ P + + A+ +D E + + Y+++ PTF
Sbjct: 35 FTASWCGPCRVIAPVFAEYAKKFPG---AIFLKVDVDELKDVAEAYNVEAMPTFL 86
Score = 25.4 bits (56), Expect = 3.4
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 26 AEVLKDNHKVALAAIDCTEH--GPLCKEYDIKGYPTFHHLALT---IMIIRLALAAIDCT 80
+ L ID T GP C+ I P F A + ++ +D
Sbjct: 19 THMANGKDTGKLVIIDFTASWCGP-CRV--IA--PVFAEYAKKFPGAIFLK-----VDVD 68
Query: 81 EHGPLCKEYDIKGYPTFQYF 100
E + + Y+++ PTF +
Sbjct: 69 ELKDVAEAYNVEAMPTFLFI 88
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 31.6 bits (72), Expect = 0.025
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 13/86 (15%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C + P+ + + + + I E K+Y K
Sbjct: 40 CPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE------- 92
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPTF 97
D L +D+K PT
Sbjct: 93 ------DRKGMEFLTTGFDVKSIPTL 112
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 31.3 bits (71), Expect = 0.031
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 7 FYSPGCGYCKKAKPEYVKAAE-----VLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
YS C +C + P+ ++A++ ++ + + + + ++G PT
Sbjct: 38 VYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPT 95
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 31.9 bits (73), Expect = 0.033
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+YS C C P+ V+A ++ N ++ AID E ++ G P
Sbjct: 124 YYSLSCHNC----PDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPA 173
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 31.0 bits (70), Expect = 0.050
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEV---LKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I + C+ + V ++++ D E + Y + +P
Sbjct: 47 INIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 30.7 bits (70), Expect = 0.050
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 21/90 (23%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE-----YDIKGYPTFHHLALT 66
C C + P+ + A+ D+ V L + G + Y Y L
Sbjct: 34 CSICLASLPDTDEIAKEAGDD-YVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVL--- 89
Query: 67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPT 96
+D G L + Y ++ YPT
Sbjct: 90 ----------VD--PSGKLLETYGVRSYPT 107
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 30.5 bits (69), Expect = 0.054
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++ CG C++ AE N V +D ++G Y + P
Sbjct: 30 FFATWCGPCQRLGQILPSIAE---ANKDVTFIKVDVDKNGNAADAYGVSSIPAL 80
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 30.5 bits (69), Expect = 0.061
Identities = 9/56 (16%), Positives = 11/56 (19%), Gaps = 6/56 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I Y C A + V C + Y PT
Sbjct: 28 IHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQ------HYHDNCLPTI 77
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 30.4 bits (69), Expect = 0.073
Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 17/87 (19%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLALTIMII 70
CG C+ P + E + ++ C ++ +
Sbjct: 42 CGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHM------ 94
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
Y I G P F
Sbjct: 95 ---------GTDRTFMDAYLINGIPRF 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.073
Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 51/149 (34%)
Query: 2 FYSILFYSPGCGY-CKKAKPEYVKAAEVLKD----NHKVA---LAAIDCT---------- 43
++LF+ G C +A P +L+D N V L+ + T
Sbjct: 299 AITVLFF---IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 44 --EHGPLCKEYDIK-----------GYP-TFHHLALTIMIIRLALAAIDCTEHG-PLCKE 88
H P K+ +I G P + + L LT+ R A A + P +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSER 412
Query: 89 YDIKGYPTFQYFHYFNKQSP--SPYHNDY 115
K F + F P SP+H+
Sbjct: 413 ---K--LKFS--NRFL---PVASPFHSHL 431
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 30.4 bits (69), Expect = 0.077
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C CKK P++ + + V L ++ + ++ + + L I+
Sbjct: 46 CPPCKKELPQFQSFYDAHPSDS-VKLVTVNLVNSEQ--NQQVVEDFIKANKLTFPIV--- 99
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
+D G L KEY I PT
Sbjct: 100 -----LD--SKGELMKEYHIITIPT 117
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 30.4 bits (69), Expect = 0.083
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLALTIMII 70
C +C+K P +K KD + + K+ + L
Sbjct: 41 CSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQK---- 95
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ + + Y I G+P
Sbjct: 96 ---------DDVKDVLESYCIVGFPHI 113
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 30.4 bits (68), Expect = 0.084
Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 38/114 (33%)
Query: 7 FYSPGCGYCKKAKPEYVK-AAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLAL 65
F K + + K + +A + ++G L +
Sbjct: 40 FDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENK-------------- 83
Query: 66 TIMIIRLALAAIDCTEHGPLCKEYDI--KGYPTFQYFH-YFNKQSPSPYHNDYT 116
L Y + K +P+ F ++ P H D T
Sbjct: 84 ------------------ALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVT 119
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 30.1 bits (68), Expect = 0.086
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
FYSP C YCK +P + + A+ I+ + ++Y ++G PTF
Sbjct: 31 FYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTF 82
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 29.8 bits (67), Expect = 0.11
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
F++P CG C++ P++ AA L +V LA ID H + + I+G P F
Sbjct: 71 FWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF 122
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 29.9 bits (67), Expect = 0.11
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 8 YSPGCGYCKKAKPEYVKAAEVLKD-NHKVALAAIDCTEHGP-----------LCKEYDIK 55
S C +C K + + ++++E + + +D + L +Y +
Sbjct: 56 GSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVT 115
Query: 56 GYPTF 60
G+P
Sbjct: 116 GFPEL 120
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 29.8 bits (67), Expect = 0.12
Identities = 10/56 (17%), Positives = 11/56 (19%), Gaps = 6/56 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I Y C A + V C E Y PT
Sbjct: 35 IHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIE------HYHDNCLPTI 84
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 29.5 bits (66), Expect = 0.16
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCT---EHGPLCKEYDI---KGYP 58
++F + C C+ + ID + L + Y G P
Sbjct: 34 LVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIP 93
Query: 59 TF 60
Sbjct: 94 AV 95
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 29.3 bits (66), Expect = 0.19
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P CG C+ P + + A KV ++ L + I+ PT
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPT 112
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 29.3 bits (65), Expect = 0.23
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 4/56 (7%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ Y G C + A + V I + + PT
Sbjct: 138 VHIYEDGIKGCDALNSSLICLA---AEYPMVKFCKIKA-SNTGAGDRFSSDVLPTL 189
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 28.8 bits (65), Expect = 0.23
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C +C P + A N V I ++ + + ++L T +
Sbjct: 36 CPFCNAEAPSLSQVA---AANPAVTFVGIATRA-----DVGAMQSFVSKYNLNFTNL--- 84
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
D G + Y++ P
Sbjct: 85 -----ND--ADGVIWARYNVPWQPA 102
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 28.8 bits (65), Expect = 0.24
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C C+ P + A + V +A +D + + TF L
Sbjct: 37 CPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQ--EFVNKYPVKTFTQL-------- 86
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
D G + + + P
Sbjct: 87 -----AD--TDGSVWANFGVTQQPA 104
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 28.8 bits (65), Expect = 0.24
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP-TFHHLALTIMII 70
C CKK P + K V + A++ E + +K Y F +
Sbjct: 38 CEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNF-MKSYGVNFPVV------- 88
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPT 96
+D + YD+ PT
Sbjct: 89 ------LD--TDRQVLDAYDVSPLPT 106
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 28.8 bits (65), Expect = 0.26
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
F+S C CK+A P+ + + +D ++ + A+ IK H +
Sbjct: 36 FWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP 93
Query: 67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPT 96
I +D L ++ + P
Sbjct: 94 I--------FVD--SDHALTDAFENEYVPA 113
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 28.6 bits (64), Expect = 0.32
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C C + K A+ K + + K Y ++ L +
Sbjct: 50 CPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPV---- 105
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
D G + + +I YP+
Sbjct: 106 ----VTD--NGGTIAQNLNISVYPS 124
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 28.5 bits (64), Expect = 0.33
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 14/88 (15%)
Query: 12 CGYC--KKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMI 69
K++ E + + K N + + I K+ + + +
Sbjct: 45 NDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQV------ 98
Query: 70 IRLALAAIDCTEHGPLCKEYDIKGYPTF 97
++ + K+Y I P
Sbjct: 99 --CDFGGLN----SEVAKQYSIYKIPAN 120
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 28.7 bits (63), Expect = 0.37
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGY-PTFHHL 63
+F CGYC K + A+ V A ++ + +
Sbjct: 91 TVFTDITCGYCHKLHEQ---MADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNK 147
Query: 64 ALTIMIIRLALAAIDCT----EHGPLCKEYDIKGYPTF 97
A ++ ++A C +H L + + G P
Sbjct: 148 AFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAV 185
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 28.4 bits (64), Expect = 0.39
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 13/86 (15%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C C+ P + E + I E+ +Y P
Sbjct: 40 CPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDY-YGKMPWLALPFD------ 92
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPTF 97
+ L K + ++ PT
Sbjct: 93 ------QRSTVSELGKTFGVESIPTL 112
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 28.1 bits (63), Expect = 0.40
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 14/87 (16%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY-DIKGYPTFHHLALTIMII 70
+ + + K+A+ +I E + E I +
Sbjct: 44 DAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLG-- 100
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ L K+YD++
Sbjct: 101 ----------KESELYKKYDLRKGFKN 117
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 28.0 bits (62), Expect = 0.51
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKV 35
F++ C +C +P A+ + +
Sbjct: 32 FFAYTCPHCAAIEPMVEDWAKTAPQDVVL 60
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 27.9 bits (62), Expect = 0.53
Identities = 9/95 (9%), Positives = 29/95 (30%), Gaps = 20/95 (21%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALA----------AIDCTEHGPLCKEYDIKGYPTFH 61
C C + E ++ +A+ ++ + P + + +
Sbjct: 49 CPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108
Query: 62 HLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPT 96
IM++ + G L ++++++
Sbjct: 109 GDPSWIMVM----------DDGSLVEKFNVRSIDY 133
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 28.0 bits (63), Expect = 0.53
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP-TFHHLALTIMII 70
CG C+++ P + K + A++ ++ + P F
Sbjct: 40 CGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKF-LAQVPAEFTVA------- 90
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPT 96
D G + Y +KG PT
Sbjct: 91 ------FD--PKGQTPRLYGVKGMPT 108
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 28.2 bits (62), Expect = 0.53
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKV 35
F+ C +C +P K A+ KD+ +
Sbjct: 31 FFGYFCPHCAHLEPVLSKHAKSFKDDMYL 59
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 27.8 bits (62), Expect = 0.55
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 15/87 (17%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK-GYPTFHHLALTIMII 70
C + P+ ++ + ++ + E Y K +
Sbjct: 40 CPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA------- 92
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
L K ++++ PT
Sbjct: 93 -------QSEAVQKLSKHFNVESIPTL 112
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 27.5 bits (61), Expect = 0.64
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+ CG CK P + ++ K+ + ++ + L +++ I+ PT
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPELARDFGIQSIPTI 109
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A
{Plasmodium falciparum}
Length = 128
Score = 27.4 bits (61), Expect = 0.66
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++ C C E K + ++ L +D ++ L +++ +K PT
Sbjct: 49 FFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPT 99
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 27.7 bits (61), Expect = 0.67
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLK-DNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
++ + C Y + K + + E+ + +K + + K G +
Sbjct: 49 VIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVPRIM 105
Query: 64 ALT 66
+
Sbjct: 106 FVD 108
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 27.7 bits (62), Expect = 0.68
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
F++P CG C+ P + A ++ + ++ EH L Y ++ PT
Sbjct: 57 FFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPT 107
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 27.7 bits (62), Expect = 0.74
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C C++ P ++ + + + E G + ++ + L ++
Sbjct: 40 CPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKV----AVEEFFRKTGFTLPVL--- 91
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
+D + K Y G P
Sbjct: 92 -----LD--ADKRVGKLYGTTGVPE 109
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 27.3 bits (60), Expect = 0.77
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 9 SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAID-----CTEHGPLCKEYDIKGYPTF 60
C C +A+P + + + + + + K + PT
Sbjct: 40 KSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTL 96
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 27.5 bits (61), Expect = 0.83
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK-GYPTFHHLALTIMII 70
C C+ P+ V+ E D+ + E Y K + +
Sbjct: 60 CPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFA------- 112
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTF 97
+ L K+Y ++ PT
Sbjct: 113 -------NRNIVEALTKKYSVESIPTL 132
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 27.4 bits (60), Expect = 0.84
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDN 32
F+S C +C +P + + L +
Sbjct: 23 SEFFSFYCPHCNTFEPIIAQLKQQLPEG 50
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 27.5 bits (60), Expect = 0.85
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKV 35
+ F+ C +C P +K + L + +
Sbjct: 27 LEFFGYFCVHCHHFDPLLLKLGKALPSDAYL 57
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm,
electron transport, redox-active center, transport;
HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A*
2jac_A*
Length = 118
Score = 27.3 bits (61), Expect = 0.85
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE 44
+ C YC A L + KV + + +
Sbjct: 28 FVASKTYCPYCHAAL-------NTLFEKLKVPRSKVLVLQ 60
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 27.3 bits (61), Expect = 0.86
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 20/70 (28%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
F+ C YC++A E ++ + V L + +P +
Sbjct: 29 FFDYNCPYCRRAMAEVQG---LVDADPNVRLV---------------YREWPILGEGSDF 70
Query: 67 IMIIRLALAA 76
R ALAA
Sbjct: 71 AA--RAALAA 78
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 27.0 bits (60), Expect = 0.88
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 4 SILFYS-PGCGYCKKAK 19
++ Y C +CKK K
Sbjct: 23 KVIMYGLSTCVWCKKTK 39
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 27.4 bits (60), Expect = 0.90
Identities = 2/29 (6%), Positives = 7/29 (24%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKV 35
+ C +C + + +
Sbjct: 32 IFGYTCPHCAHFDSKLQAWGARQAKDVRF 60
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 26.7 bits (60), Expect = 0.96
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 5 ILFYSPGCGYCKKAK 19
IL+ P C YCK+A+
Sbjct: 9 ILYTRPNCPYCKRAR 23
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 26.4 bits (59), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 5 ILFYSPGCGYCKKAK 19
I++ PGC YC +AK
Sbjct: 9 IIYTRPGCPYCARAK 23
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 26.0 bits (58), Expect = 1.4
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 5 ILFYSPGCGYCKKAK 19
L+ P C C K
Sbjct: 4 TLYTKPACVQCTATK 18
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 26.4 bits (59), Expect = 1.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
++F P C +C+K +
Sbjct: 15 VVFIKPTCPFCRKTQ 29
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 25.9 bits (58), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
++ C YC +AK
Sbjct: 4 EIYTKETCPYCHRAK 18
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 26.9 bits (59), Expect = 1.5
Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 4/56 (7%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ Y G C A + V I + + PT
Sbjct: 125 VNIYEDGVRGCDALNSSLECLA---AEYPMVKFCKIRASNT-GAGDRFSSDVLPTL 176
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 26.6 bits (59), Expect = 1.5
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
FY+ CG CK P + A+ ++ + +D + L + I+ P+
Sbjct: 45 FYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELAGAFGIRSIPSI 96
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 26.9 bits (59), Expect = 1.5
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
F++ C C++A P V + KD+ +A+ + E+ ++ ++
Sbjct: 89 FWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYP 147
Query: 67 IMIIRLALAAIDCTEHGPLCKEYDIKGYPT 96
I A+D + Y + +P
Sbjct: 148 I--------ALD--NNYATWTNYRNRYWPA 167
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 26.1 bits (58), Expect = 1.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
++F GC YC +AK
Sbjct: 4 VIFGRSGCPYCVRAK 18
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 26.1 bits (58), Expect = 1.7
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 5 ILFYSPGCGYCKKAK 19
++ C +C +A
Sbjct: 19 EIYTWSTCPFCMRAL 33
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 26.1 bits (58), Expect = 1.7
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
+++ C +CK+
Sbjct: 15 LMYGLSTCPHCKRTL 29
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 26.1 bits (58), Expect = 1.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
++ C C +P Y K AE K +D E+ + +Y + PT
Sbjct: 28 CWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPT 78
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 26.1 bits (58), Expect = 1.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 ILFYSPGCGYCKKAK 19
++F CGYC + K
Sbjct: 23 VVFSKTYCGYCNRVK 37
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural
genomics of infec diseases, csgid, oxidoreductase; HET:
GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 25.7 bits (57), Expect = 1.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
++ GC YC AK
Sbjct: 7 KIYTRNGCPYCVWAK 21
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 26.5 bits (58), Expect = 1.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEV 28
+F P C +CK+ + E+ K +V
Sbjct: 19 AVFSDPDCPFCKRLEHEFEKMTDV 42
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 26.1 bits (58), Expect = 2.0
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 26/77 (33%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTE-------------------HGPLCKEY 52
C YC+ P + + + + A++ + G + + Y
Sbjct: 53 CPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY 111
Query: 53 DIKGYPTFHHLALTIMI 69
P T ++
Sbjct: 112 GANRLPD------TFIV 122
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 26.6 bits (59), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
+F PGC +C KAK
Sbjct: 173 SIFTKPGCPFCAKAK 187
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 26.4 bits (57), Expect = 2.2
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 8/98 (8%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH-HL 63
+F C YC + E V A + +
Sbjct: 91 TVFMDITCHYCHLLHQ---QLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVF 147
Query: 64 ALTIMIIRLALAAIDCT----EHGPLCKEYDIKGYPTF 97
AL + +H L ++ ++G P+
Sbjct: 148 ALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSI 185
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure
2 function project, S2F, structu genomics, unknown
function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa}
SCOP: c.47.1.12
Length = 114
Score = 25.6 bits (57), Expect = 2.4
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 4 SILFYS-PGCGYCKKAKPEYVKAAEVLK--DNHKVALAAIDCTEHGP 47
+ + Y C KKA+ D HKVA D G
Sbjct: 1 TYVLYGIKACDTMKKAR----------TWLDEHKVAYDFHDYKAVGI 37
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 25.3 bits (56), Expect = 2.5
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 5 ILFYSPGCGYCKKAK 19
++ C C K
Sbjct: 4 TIYTRNDCVQCHATK 18
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 25.7 bits (57), Expect = 2.6
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 5 ILFYSPGCGYCKKAK 19
++F C + + K
Sbjct: 20 VIFSKSYCPHSTRVK 34
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 25.7 bits (57), Expect = 2.8
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
+++ C YC + K
Sbjct: 22 VIYSKTWCSYCTEVK 36
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 137
Score = 26.0 bits (57), Expect = 2.9
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
F++ C+ P Y + + + +D + + Y + P L T
Sbjct: 33 FFANWSNDCQSFAPIYADLSLKY-NCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP-T 90
Query: 67 IMI 69
+++
Sbjct: 91 LIL 93
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A
{Salmonella enterica subsp}
Length = 189
Score = 26.1 bits (56), Expect = 3.1
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKD 31
F+S C C +
Sbjct: 21 FFSFYCPPCYAFSQTMGVDQAIRHV 45
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 25.4 bits (56), Expect = 3.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
++F C YC AK
Sbjct: 30 VIFSKTSCSYCTMAK 44
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 25.6 bits (55), Expect = 3.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKD 31
+ F+S C +C + + + V K
Sbjct: 26 LEFFSFYCPHCYQFEEVLHVSDNVKKK 52
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S
genomics, seattle structural genomics center for
infectious ssgcid; NMR {Brucella abortus}
Length = 120
Score = 25.3 bits (56), Expect = 4.3
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 4 SILFYS-PGCGYCKKAKPEYVKAAEVLK--DNHKVALAAIDCTEHGP 47
S+ Y C KKA+ ++H + D + G
Sbjct: 6 SVTIYGIKNCDTMKKAR----------IWLEDHGIDYTFHDYKKEGL 42
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY
crystallography, putative translation factor, PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: d.115.1.1 PDB: 1kk9_A
Length = 206
Score = 25.5 bits (57), Expect = 4.3
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 24 KAAEVLKDNHKVA--------LAAIDCTEHGPLCKEYDIKGYPTFHHLALTI 67
+A E+++ + L + + + I+ P H+ L
Sbjct: 19 QAVEIVRKGGVIVYPTDSGYALGC-KIEDKNAMERICRIRQLPDGHNFTLMC 69
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 24.9 bits (55), Expect = 4.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 5 ILFYSPGCGYCKKAK 19
+F C +C+ A
Sbjct: 22 TIFVKYTCPFCRNAL 36
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
PDB: 2fls_A*
Length = 146
Score = 25.1 bits (55), Expect = 5.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 5 ILFYSPGCGYCKKAK 19
++F C YC AK
Sbjct: 52 VIFSKTSCSYCTMAK 66
>3gkx_A Putative ARSC family related protein; ARSC family protein,
structural genomi 2, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 120
Score = 24.9 bits (55), Expect = 5.4
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 4 SILFYS-PGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE 51
LF P C C+KAK + + + P +E
Sbjct: 5 KTLFLQYPACSTCQKAK--------KWLIENNIEYTNRLIVDDNPTVEE 45
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 24.3 bits (53), Expect = 5.6
Identities = 6/17 (35%), Positives = 6/17 (35%)
Query: 3 YSILFYSPGCGYCKKAK 19
Y CG C AK
Sbjct: 5 YGYDSNIHKCGPCDNAK 21
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 24.9 bits (55), Expect = 6.4
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 5 ILFY-SPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKE 51
+ Y SP C C+KA+ + H++ + E
Sbjct: 3 VTLYTSPSCTSCRKAR--------AWLEEHEIPFVERNIFSEPLSIDE 42
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 24.6 bits (54), Expect = 6.8
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP-TFHHLALTIMII 70
C C+ P+ V+ + I E P K Y +K + +
Sbjct: 46 CPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNY-MKTQGIIYPVM------- 96
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPT 96
+A + + I G PT
Sbjct: 97 ---MATPELIRAFNGYIDGGITGIPT 119
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 24.6 bits (54), Expect = 7.2
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 15/85 (17%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
C C P+ +K A K+ + A+ ++ Y + L T+
Sbjct: 40 CPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIE----SVRQYVKDYGLPFTV---- 90
Query: 72 LALAAIDCTEHGPLCKEYDIKGYPT 96
D + + + + YPT
Sbjct: 91 ----MYD--ADKAVGQAFGTQVYPT 109
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 24.6 bits (54), Expect = 7.5
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 5 ILFYSPGCGYCKKAK 19
+ C YCK
Sbjct: 40 FVAAKTYCPYCKATL 54
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 24.7 bits (54), Expect = 7.8
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 5 ILFYSPGCGYCKKAK 19
I+F C Y K K
Sbjct: 17 IIFSKSTCSYSKGMK 31
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Enterococcus
faecalis} SCOP: c.47.1.13
Length = 175
Score = 24.8 bits (54), Expect = 8.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVAL 37
I F + C YC+K E + + KV
Sbjct: 32 IEFINVRCPYCRKWFEESEELLAQSVKSGKVER 64
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 24.0 bits (52), Expect = 9.1
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIK 55
+++ GC C++ + VL+ L I+ + L + Y+ +
Sbjct: 33 VVYGREGCHLCEEMIA----SLRVLQKKSWFELEVINIDGNEHLTRLYNDR 79
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 24.2 bits (53), Expect = 9.1
Identities = 6/87 (6%), Positives = 14/87 (16%), Gaps = 17/87 (19%)
Query: 12 CGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIR 71
+ + I K P + +
Sbjct: 47 NAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTS-ADNLP-WVCV-------- 95
Query: 72 LALAAIDCT-EHGPLCKEYDIKGYPTF 97
D + Y++ P+
Sbjct: 96 -----RDANGAYSSYISLYNVTNLPSV 117
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 24.2 bits (53), Expect = 9.9
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 12 CGYCKKAKPEYVKAAEVL-KDNHKVALAAIDCTE 44
CG C+K P K + KDN AL ID E
Sbjct: 45 CGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDE 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.464
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,950,584
Number of extensions: 106467
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 252
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.5 bits)