RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3452
(116 letters)
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 43.9 bits (103), Expect = 2e-07
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 1 MFYSILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY--DIKGYP 58
F + Y K+ + ++L + + + L ++Y D + YP
Sbjct: 27 KFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGI--SDYGDKLNMELSEKYKLDKESYP 84
Query: 59 TFHH 62
F+
Sbjct: 85 VFYL 88
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 41.6 bits (97), Expect = 2e-06
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH-KVALAAIDCTEHGP-----LCKEY--DIKG 56
+ F K + ++ + +A + ++G L Y D K
Sbjct: 24 VKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN 81
Query: 57 YPTFHH 62
+P+
Sbjct: 82 FPSIFL 87
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like
protein {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 85
Score = 40.5 bits (94), Expect = 2e-06
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+F SP C YC A +A + D V I EY + P
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAI 59
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 36.7 bits (84), Expect = 1e-04
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 5 ILFYSPGCGY------CKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYP 58
+L++ P + + AA+VL+D V +D + + K+ +
Sbjct: 33 LLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGLTEED 91
Query: 59 TFHHLALTIMI 69
+ + +I
Sbjct: 92 SIYVFKEDEVI 102
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 35.5 bits (81), Expect = 2e-04
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
+ F++ CG CK P + A+ + K+ +A ++ ++ +Y I+G PT
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIAD--EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus
acidocaldarius, formerly Bacillus acidocaldarius
[TaxId: 405212]}
Length = 105
Score = 34.8 bits (79), Expect = 5e-04
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ F++ CG C+ P + AE D KV +A ++ E+ ++ I PT
Sbjct: 22 VDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTL 75
Score = 24.4 bits (52), Expect = 2.8
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 71 RLALAAIDCTEHGPLCKEYDIKGYPTFQYFH 101
++ +A ++ E+ ++ I PT F
Sbjct: 49 KVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 34.4 bits (78), Expect = 9e-04
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
++ + CG CK KP++ ++ E+ + +H + ++ E GY
Sbjct: 30 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 88
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase
subunit F (AhpF), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 96
Score = 33.9 bits (77), Expect = 9e-04
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+YS C C A N ++ AID E ++ G P
Sbjct: 20 ETYYSLSCHNCPDVVQALNLMAV---LNPRIKHTAIDGGTFQNEITERNVMGVPAV 72
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 33.8 bits (77), Expect = 0.001
Identities = 4/67 (5%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 7 FYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLALT 66
+ +A D + + ++++ +P
Sbjct: 37 SDPRRTPEVSDNPVMIAELLREFPQFDWQ-VAVADLEQSEAIGDRFNVRRFPATLVFTDG 95
Query: 67 IMIIRLA 73
+ L+
Sbjct: 96 KLRGALS 102
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI
{Fungi (Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 33.7 bits (76), Expect = 0.002
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I FY+P CG+CK P+Y + + + I + +I+G+PT
Sbjct: 25 IEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI 80
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 32.9 bits (74), Expect = 0.002
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
+ F++ CG C+ P AA D KV ID + K+Y ++G P
Sbjct: 25 VYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPAL 78
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 32.3 bits (73), Expect = 0.005
Identities = 5/69 (7%), Positives = 13/69 (18%), Gaps = 1/69 (1%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
+ + D +A D + + + + +P
Sbjct: 41 LSSDPKRTPEVSDNPVMIGELLREFPDYTWQ-VAIADLEQSEAIGDRFGVFRFPATLVFT 99
Query: 65 LTIMIIRLA 73
L
Sbjct: 100 GGNYRGVLN 108
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 31.7 bits (71), Expect = 0.008
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ F GCG C + P + + + +D + +I PTF
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLE---VDVHQCQGTAATNNISATPTFQ 79
Score = 27.4 bits (60), Expect = 0.25
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 78 DCTEHGPLCKEYDIKGYPTFQYFH 101
D + +I PTFQ+F
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFR 82
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas
campestris [TaxId: 339]}
Length = 75
Score = 30.2 bits (68), Expect = 0.013
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEY 52
L+ C C +A E L A ++ + L Y
Sbjct: 3 TLYQRDDCHLCDQAV-------EALAQARAGAFFSVFIDDDAALESAY 43
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing
protein C330018D20Rik {Mouse (Mus musculus) [TaxId:
10090]}
Length = 100
Score = 30.5 bits (68), Expect = 0.014
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
LF C C +AK + KD + I E+ + Y P FH
Sbjct: 20 TLFTKAPCPLCDEAKEVL----QPYKDRFILQEVDITLPENSTWYERYKF-DIPVFHLNG 74
Query: 65 LTIMIIRLALAAI 77
+M+ R+ + +
Sbjct: 75 QFLMMHRVNTSKL 87
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 30.6 bits (68), Expect = 0.016
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ F++P CG C+ P + A + K+ ++ E + EY I+ PT
Sbjct: 24 VDFWAPWCGPCRIIAPVVDEIAG--EYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.1 bits (67), Expect = 0.028
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
I F C K AE +K+ + L I E K Y++ T
Sbjct: 27 IRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYDPCTV 80
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 29.4 bits (65), Expect = 0.056
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 8/98 (8%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
+F C YC + E V A + + +
Sbjct: 31 TVFMDITCHYCHLLHQQL---KEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVF 87
Query: 65 LTIMIIRLALAAIDCT-----EHGPLCKEYDIKGYPTF 97
+ L T +H L ++ ++G P+
Sbjct: 88 ALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSI 125
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 29.1 bits (64), Expect = 0.086
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
I F++ C C + K A+ K + + K Y ++
Sbjct: 28 IKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPK 87
Query: 65 LTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
L ++ G + + +I YP++
Sbjct: 88 LPVV----------TDNGGTIAQSLNISVYPSW 110
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 28.7 bits (63), Expect = 0.088
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH--KVALAAIDCTEHGPLCKEYDIKGYPTFH 61
++F +P C YC A K A K+ ++ E+ +Y++ P
Sbjct: 20 LVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV 78
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 29.0 bits (64), Expect = 0.097
Identities = 12/98 (12%), Positives = 22/98 (22%), Gaps = 8/98 (8%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAE-----VLKDNHKVALAAIDCTEHGPLCKEYDIKGYPT 59
+F CGYC K + + L + E + D
Sbjct: 31 TVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFD 90
Query: 60 FHHLALTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
++ + D + + G P
Sbjct: 91 DVMAGKSVAPASCDVDIADHYAL---GVQLGVSGTPAV 125
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 28.2 bits (62), Expect = 0.11
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ ++ CG CK P+Y K AE D + L + L KE I+ PTF
Sbjct: 30 LDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE--NKTLAKELGIRVVPTFK 84
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like
protein {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 85
Score = 28.0 bits (61), Expect = 0.12
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTF 60
LF SP C +C AK + A + D +V I+ E+ EY I PT
Sbjct: 7 ELFTSPMCPHCPAAKRVVEEVANEMPDAVEV--EYINVMENPQKAMEYGIMAVPTI 60
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 28.5 bits (63), Expect = 0.15
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 27 EVLKDNHKVALAAIDCTEHG-PLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGPL 85
E ++ KV ++ E G C + + LA +++ T
Sbjct: 112 ETIEKEQKVTTIVVNIYEDGVRGCDALN----SSLECLAAEYPMVKFCKIRASNT---GA 164
Query: 86 CKEYDIKGYPTFQYFH 101
+ PT +
Sbjct: 165 GDRFSSDVLPTLLVYK 180
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein
DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 169
Score = 28.3 bits (62), Expect = 0.19
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 17/108 (15%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGP--------LCKEYDIKG 56
+F P C YCK+ + D+ KV L + P + D
Sbjct: 41 YVFADPFCPYCKQFWQQARP----WVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAK 96
Query: 57 YPTFHHLALTIMIIRLALAAIDCT-----EHGPLCKEYDIKGYPTFQY 99
+ + + + + ++ L + P Y
Sbjct: 97 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYY 144
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 28.0 bits (61), Expect = 0.23
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 3/59 (5%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
++ C C+ A + + LA I ++ +
Sbjct: 59 LVAGEMWCPDCQINLAALDFAQ---RLQPNIELAIISKGRAEDDLRQRLALERIAIPLV 114
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 27.5 bits (60), Expect = 0.23
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 5 ILFYSPGCGYCKKAKPEY-VKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHL 63
+ FY+P CG+CK PEY A ++ + ++ LA +D TE L ++Y ++GYPT
Sbjct: 29 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFF 88
Score = 24.8 bits (53), Expect = 1.9
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 27 EVLKDNHKVALA--AIDCTEHGPLCKEYDIKGYPTFHHLALTIMIIRLALAAIDCTEHGP 84
E L + + + A C L EY + + D TE
Sbjct: 19 EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV------DATEESD 72
Query: 85 LCKEYDIKGYPTFQYFHYFNKQSPSPY 111
L ++Y ++GYPT ++F + SP Y
Sbjct: 73 LAQQYGVRGYPTIKFFRNGDTASPKEY 99
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 26.1 bits (57), Expect = 0.47
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 5 ILFYSPGCGYCKKAK 19
L+ P C C K
Sbjct: 4 TLYTKPACVQCTATK 18
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 26.1 bits (57), Expect = 0.60
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
++F GC YC +AK
Sbjct: 4 VIFGRSGCPYCVRAK 18
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of
Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 25.3 bits (55), Expect = 0.77
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
+F PGC +C KAK
Sbjct: 8 SIFTKPGCPFCAKAK 22
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 25.4 bits (55), Expect = 1.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 5 ILFYSPGCGYCKKAK 19
++F P C +C+K +
Sbjct: 15 VVFIKPTCPFCRKTQ 29
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 25.2 bits (54), Expect = 1.5
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFH 61
+ F + CG CK P + + KV +D + + I PTFH
Sbjct: 29 VDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAMPTFH 83
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 24.6 bits (53), Expect = 1.7
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 6 LFYSPGCGYCKKAK 19
++ C YC +AK
Sbjct: 5 IYTKETCPYCHRAK 18
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 24.6 bits (53), Expect = 1.8
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 5 ILFYSPGCGYCKKAKPEY 22
++ C C K
Sbjct: 4 TIYTRNDCVQCHATKRAM 21
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 24.9 bits (54), Expect = 2.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHK 34
+ F+S C +C + + + V K +
Sbjct: 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPE 147
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Escherichia coli [TaxId: 562]}
Length = 188
Score = 24.5 bits (52), Expect = 3.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNH 33
+ F+S C +C + + + V K
Sbjct: 23 LEFFSFFCPHCYQFEEVLHISDNVKKKLP 51
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 24.3 bits (52), Expect = 3.4
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 11 GCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLC 49
CG C + A + CT LC
Sbjct: 111 NCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCT-LC 148
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 24.5 bits (52), Expect = 3.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHK 34
I F + C YC+K E + + K
Sbjct: 29 IEFINVRCPYCRKWFEESEELLAQSVKSGK 58
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 24.1 bits (51), Expect = 3.6
Identities = 4/58 (6%), Positives = 11/58 (18%), Gaps = 2/58 (3%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHH 62
C YC+K + + + + + +
Sbjct: 31 FFIGRKTCPYCRKFAGTLSGVVA--ETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP 86
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 23.9 bits (51), Expect = 3.9
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 1 MF--YSILFYSPGCGYCKKAK 19
MF Y CG C AK
Sbjct: 1 MFKVYGYDSNIHKCGPCDNAK 21
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 24.3 bits (53), Expect = 4.3
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 85 LCKEYDIKGYPTFQYFHYFNKQSPSPYHNDY 115
K++ IK YP F Y + +++
Sbjct: 63 YYKDWGIKVYPGGTLFEYAYSKGK---FDEF 90
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 24.1 bits (51), Expect = 4.5
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGYPTFHHLA 64
I F+S C CK+A P+ + + +D V + +E +
Sbjct: 34 IHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDIT-- 91
Query: 65 LTIMIIRLALAAIDCTEHGPLCKEYDIKGYPTF 97
I L ++ + P +
Sbjct: 92 ----------QPIFVDSDHALTDAFENEYVPAY 114
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII)
{Thermotoga maritima [TaxId: 2336]}
Length = 221
Score = 23.8 bits (51), Expect = 5.8
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 79 CTEHGPLCKEYDI---KGYPTFQYFHYFNKQSPSPYH 112
+E + ++ KGY T ++ + K P H
Sbjct: 145 MSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIH 181
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus
subtilis [TaxId: 1423]}
Length = 114
Score = 23.4 bits (50), Expect = 7.0
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 5 ILFYSPGCGYCKKAKPEYVKAAEVLKDNHKVALAAIDCTEHGPLCKEYDIKGY------- 57
L+ SP C C+KA+ +++ E+ + + E + + +
Sbjct: 3 TLYTSPSCTSCRKAR-AWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRS 61
Query: 58 PTFHHLALTIMIIRLALAAIDCTEHGPLCK 87
F L + + + L EH L +
Sbjct: 62 KVFQKLNVNVESMPLQDLYRLINEHPGLLR 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.464
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,898
Number of extensions: 20996
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 56
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)