BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3458
(151 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328726334|ref|XP_003248854.1| PREDICTED: hypothetical protein LOC100570279 [Acyrthosiphon pisum]
Length = 401
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 98/149 (65%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ +N VVV+TDGAC NG GA AG GV+FG ++PLN++ +V G TNNNAEI I A
Sbjct: 251 FNEENQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKA 310
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+++ S + R+ I +DS F+IK V EWMP+W S GW+ + G V+NKE L +I
Sbjct: 311 IERVYSTGLTRISIHTDSDFVIKSVNEWMPRWLSKGWKTSAGAEVKNKEMFMILNKRIQS 370
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
M+SV W +VPGH GN +AD++AR A
Sbjct: 371 MDSVSWTYVPGHKGIIGNEEADKLARIGA 399
>gi|328707186|ref|XP_001948714.2| PREDICTED: hypothetical protein LOC100160388 [Acyrthosiphon pisum]
Length = 362
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 98/149 (65%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ +N VVV+TDGAC NG GA AG GV+FG ++PLN++ +V G TNNNAEI I A
Sbjct: 212 FNEENQVVVYTDGACSNNGYKGACAGAGVWFGNDHPLNLSIRVPGTQTNNNAEIFSTIKA 271
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+++ S + R+ I +DS F+IK V EWMP+W S GW+ + G V+NKE L +I
Sbjct: 272 IERVYSTGLTRISIHTDSDFVIKSVNEWMPRWLSKGWKTSAGAEVKNKEMFMILNKRIQS 331
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
M+SV W +VPGH GN +AD++AR A
Sbjct: 332 MDSVSWTYVPGHKGIIGNEEADKLARIGA 360
>gi|332373760|gb|AEE62021.1| unknown [Dendroctonus ponderosae]
Length = 266
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 94/146 (64%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D +VVV+TDGAC NGK A AG G +F + NP+N++ V GR TNN AEIQ I ALK
Sbjct: 115 DGYVVVYTDGACENNGKPNAKAGVGAWFSDGNPMNISEPVVGRPTNNTAEIQAPIEALKL 174
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
KS +V I +DSQF I C+ +W+ KW+ N W+ A+G PV+NKE+L +L Q
Sbjct: 175 LKSQGFKKVKIFTDSQFTINCITKWIHKWKKNQWKLANGGPVKNKEDLVQLDALCQQFLD 234
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+KWE+ GH GN +AD +AR+ A
Sbjct: 235 IKWEYCAGHKGIKGNEEADRLAREGA 260
>gi|328792978|ref|XP_395566.3| PREDICTED: ribonuclease H1 [Apis mellifera]
Length = 278
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V V+TDGAC NG A AG GV+FG N+PLN++ V GR TNN AEIQ A
Sbjct: 128 IDNDGYVNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIA 187
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
KQAK A I + I +DSQF+I C+ WMPKW+ NGW+ + KPV NK EL E+ + +
Sbjct: 188 AKQAKKAGIKNLKINTDSQFLISCINNWMPKWKRNGWKTFNNKPVINKIELLEMENALKS 247
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
+ +V W V GH +GN AD++AR
Sbjct: 248 L-NVIWNHVNGHAGIYGNEMADKLAR 272
>gi|380023892|ref|XP_003695743.1| PREDICTED: ribonuclease H1-like [Apis florea]
Length = 238
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V V+TDGAC NG A AG GV+FG+N+PLN++ V GR TNN AEIQ A
Sbjct: 88 IDNDGYVNVYTDGACSSNGHKNAQAGIGVWFGDNHPLNISKAVVGRATNNMAEIQAVTIA 147
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
KQAK A I + I +DS+F+I C+ WMPKW+ NGW+ + KPV NK EL E+ +
Sbjct: 148 AKQAKKAGIKNLKINTDSKFLISCINNWMPKWKLNGWKTFNNKPVINKIELLEMEKALES 207
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
+ +V W V GH +GN AD++AR
Sbjct: 208 L-NVIWNHVNGHAGIYGNEMADKLAR 232
>gi|345485265|ref|XP_001599895.2| PREDICTED: ribonuclease H1 [Nasonia vitripennis]
Length = 302
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + + V+TDGAC NG+ A AG GV+F E N NV+ V GR TNN AEIQ A
Sbjct: 126 IDSNGYTEVYTDGACSSNGRRNAKAGIGVWFSERNAYNVSQPVDGRATNNIAEIQAVTIA 185
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
QA+ A I ++ I +DSQF+I C+ +WMPKW+ GW+ + GKPV NK EL E+ +
Sbjct: 186 ASQAQKAGIKKLKINTDSQFLISCITQWMPKWKKCGWQTSTGKPVINKTELIEMEKALAP 245
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
++ V W V GH HGN AD +AR A
Sbjct: 246 LQ-VSWNHVRGHVGIHGNEMADRLARSGA 273
>gi|390179738|ref|XP_003736961.1| GA21286, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859951|gb|EIM53034.1| GA21286, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 305
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V+GRVTNN EIQ AIHA
Sbjct: 147 IDTEGYVIVYTDGSCIGNGRKGACAGYGVYFGDNHKLNAAKPVSGRVTNNVGEIQAAIHA 206
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+K A+ I ++CI +DSQF+I + W+ W+ GW A+ +PV+N + +EL +
Sbjct: 207 IKTARDLGIGKLCIYTDSQFLINSITLWVQGWKRRGWMLANNQPVKNVVDFKELDELLQN 266
Query: 121 ME-SVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ VKW +V H GN AD++AR +
Sbjct: 267 KDIKVKWNYVEAHKGIKGNEMADKLARQGSA 297
>gi|340711175|ref|XP_003394155.1| PREDICTED: ribonuclease H1-like isoform 1 [Bombus terrestris]
gi|340711177|ref|XP_003394156.1| PREDICTED: ribonuclease H1-like isoform 2 [Bombus terrestris]
Length = 283
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D V V+TDGAC NG+ A AG GV+FG+N+PLNV+ V GR TNNNAEI A
Sbjct: 132 VDSDGFVNVYTDGACSANGRENAKAGIGVWFGDNHPLNVSEAVVGRATNNNAEINAVTVA 191
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+QA+ A I + I +DSQF+I C++ WMP W+ GW ++ KPV NK EL E+ +
Sbjct: 192 ARQARKAGIKNLKINTDSQFLINCIKYWMPSWKEKGWVTSNNKPVINKNELIEMEEALKP 251
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ +V W V GH +GN AD++AR +
Sbjct: 252 L-NVVWNHVNGHVGVYGNEMADKLARTGSS 280
>gi|45552509|ref|NP_995777.1| ribonuclease H1, isoform B [Drosophila melanogaster]
gi|45445652|gb|AAS64899.1| ribonuclease H1, isoform B [Drosophila melanogaster]
Length = 314
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 157 IDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 216
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+K A I ++CI +DSQF+I + W+ W+ W+ + +PV+N + +EL + +
Sbjct: 217 IKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQE 276
Query: 121 ME-SVKWEFVPGHGNSHGNMKADEMARDAAG 150
+VKW +V H GN AD++AR +
Sbjct: 277 NNITVKWNYVEAHKGIEGNEMADKLARQGSA 307
>gi|2677845|gb|AAC47810.1| ribonuclease H1 [Drosophila melanogaster]
Length = 333
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--LHQI 118
+K A I ++CI +DSQF+I + W+ W+ W+ + +PV+N + +EL L Q
Sbjct: 236 IKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQD 295
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ +VKW +V H GN AD++AR +
Sbjct: 296 NNI-TVKWNYVEAHKGIEGNEMADKLARQGSA 326
>gi|17137476|ref|NP_477315.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|7304133|gb|AAF59170.1| ribonuclease H1, isoform A [Drosophila melanogaster]
gi|19527995|gb|AAL90112.1| AT19436p [Drosophila melanogaster]
gi|220949756|gb|ACL87421.1| rnh1-PA [synthetic construct]
gi|220958970|gb|ACL92028.1| rnh1-PA [synthetic construct]
Length = 333
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+K A I ++CI +DSQF+I + W+ W+ W+ + +PV+N + +EL + +
Sbjct: 236 IKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQE 295
Query: 121 ME-SVKWEFVPGHGNSHGNMKADEMARDAAG 150
+VKW +V H GN AD++AR +
Sbjct: 296 NNITVKWNYVEAHKGIEGNEMADKLARQGSA 326
>gi|312374134|gb|EFR21765.1| hypothetical protein AND_16414 [Anopheles darlingi]
Length = 735
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V V+TDG+C NGK A+AG GVYF E + LN + V+GR TNN EIQ A A+
Sbjct: 538 DQDGYVHVYTDGSCEGNGKPNAAAGLGVYFDEGHALNTSKPVSGRATNNCGEIQAASTAI 597
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI--G 119
+ A+ ++R+ I +DS+F+I +WMP W++ W A G PV+NK + EL ++ G
Sbjct: 598 RLAREQGVERLAINTDSKFLIDATTQWMPGWKNRDWTLASGGPVKNKADFMELDREMNTG 657
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
M S+KW V H GN +AD++AR +
Sbjct: 658 NM-SIKWNHVDAHSGIVGNERADQLARKGS 686
>gi|327282766|ref|XP_003226113.1| PREDICTED: ribonuclease H1-like isoform 1 [Anolis carolinensis]
Length = 323
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ VV+TDG C NGK A AG GVY+G ++PLN + ++ GR TN AEI A A++QAK
Sbjct: 178 YTVVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAK 237
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S NI ++ I +DS+F I + W+P W+SNGW+ GK V NKE+ E L ++ + ++
Sbjct: 238 SQNIKKLAIYTDSKFTINGMTSWVPNWKSNGWKTCAGKDVTNKEDF-EKLSKLSEGMDIQ 296
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W VPGH GN AD +A++ AG
Sbjct: 297 WMHVPGHAGFTGNEAADRLAKEGAG 321
>gi|289724715|gb|ADD18320.1| ribonuclease H [Glossina morsitans morsitans]
Length = 299
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
++ D +++ +TDG+C NG A AGYGVYFG+N+PLNVA VTGRVTNN EIQ AI+A
Sbjct: 139 INEDGYILAYTDGSCFNNGGKNACAGYGVYFGDNHPLNVAEPVTGRVTNNVGEIQAAIYA 198
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+K A+ I+++CI +DSQF+I V W+ W++ W G V+N+ + +E L + Q
Sbjct: 199 VKTAQKMGINKLCISTDSQFLINAVTLWIKGWKAKNWHLKTGDRVKNEVDFKE-LDSLLQ 257
Query: 121 MES--VKWEFVPGHGNSHGNMKADEMARDAA 149
ES VKW +V H GN AD++A+ A
Sbjct: 258 DESLDVKWNYVKAHKGIKGNEMADKLAKTGA 288
>gi|357604992|gb|EHJ64411.1| hypothetical protein KGM_00953 [Danaus plexippus]
Length = 323
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V VFTDGAC NGK GA AG GV++GE +PLN++ V+GR TNN EIQ A A
Sbjct: 171 LDEDGYVQVFTDGACSSNGKNGARAGLGVFWGEGHPLNISKPVSGRATNNCGEIQAATEA 230
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
++ A I ++ I +DS+F+I V +W+ W+ GW+ A G+PV+N+++ +E L I
Sbjct: 231 IRTAVDNGITKLAINTDSKFLINSVTKWISGWKRKGWKLASGEPVKNEKDFKE-LDSIQN 289
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
+KW +V H HGN AD++A+ A
Sbjct: 290 KIDIKWIYVEAHRGIHGNEMADQLAKAGA 318
>gi|327282768|ref|XP_003226114.1| PREDICTED: ribonuclease H1-like isoform 2 [Anolis carolinensis]
Length = 300
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ VV+TDG C NGK A AG GVY+G ++PLN + ++ GR TN AEI A A++QAK
Sbjct: 155 YTVVYTDGCCSSNGKSKARAGTGVYWGPSHPLNSSERLPGRQTNQRAEIHAACKAIEQAK 214
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S NI ++ I +DS+F I + W+P W+SNGW+ GK V NKE+ E L ++ + ++
Sbjct: 215 SQNIKKLAIYTDSKFTINGMTSWVPNWKSNGWKTCAGKDVTNKEDF-EKLSKLSEGMDIQ 273
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W VPGH GN AD +A++ AG
Sbjct: 274 WMHVPGHAGFTGNEAADRLAKEGAG 298
>gi|156717518|ref|NP_001096299.1| ribonuclease H1 [Xenopus (Silurana) tropicalis]
gi|134023904|gb|AAI35623.1| LOC100124876 protein [Xenopus (Silurana) tropicalis]
Length = 299
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C +NG++ A AG GVY+G N+PLN+A K+ GR TN AEIQ A AL+ A
Sbjct: 149 DSVVVYTDGCCSQNGRLKARAGIGVYWGLNHPLNLAEKLEGRQTNQRAEIQAACRALELA 208
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS NI ++ + +DS F I + +W+ W+ NGW+ GK V N+E+ E L ++ Q +
Sbjct: 209 KSQNISKLVLYTDSMFTINGITKWIHSWKRNGWKLTTGKKVINREDF-EKLDKLTQGLDI 267
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
KW +PGH GN AD ++R+ A
Sbjct: 268 KWMHIPGHAGFEGNEAADRLSREGA 292
>gi|390345185|ref|XP_789772.2| PREDICTED: ribonuclease H1-like [Strongylocentrotus purpuratus]
Length = 220
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+++VV+TDGAC NG GA AG GVY+G+N+PLN + ++ G+ TN AE+ A+ AL+Q
Sbjct: 68 DNLVVYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQI 127
Query: 65 KSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ R V + +DS++ I CV +W+ +W+ NGW+ A V NKE+L + L ++ +
Sbjct: 128 NEHHKRRKVTLYTDSKYTINCVTDWIHRWKKNGWKTAQKTDVINKEDLVK-LDKLNRELD 186
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAAG 150
VKWE+VPGH N +GN +AD++AR+ A
Sbjct: 187 VKWEYVPGHKNVYGNERADKLAREGAA 213
>gi|348518293|ref|XP_003446666.1| PREDICTED: ribonuclease H1-like isoform 2 [Oreochromis niloticus]
Length = 295
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ GA AG GVY+G NNPLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 149 VVVYTDGCCSGNGQSGARAGIGVYWGCNNPLNVAERLQGRQTNQRAEIQAACRALEQAKQ 208
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS+F I V W+ W+ NGWR G + NK++ +L GQ+E V W
Sbjct: 209 NNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLKSGGQITNKDDFMKLDRLNGQVEVV-W 267
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD ++R+ A
Sbjct: 268 MHIPGHAGYRGNEEADRLSREGA 290
>gi|348518291|ref|XP_003446665.1| PREDICTED: ribonuclease H1-like isoform 1 [Oreochromis niloticus]
Length = 278
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ GA AG GVY+G NNPLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 132 VVVYTDGCCSGNGQSGARAGIGVYWGCNNPLNVAERLQGRQTNQRAEIQAACRALEQAKQ 191
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS+F I V W+ W+ NGWR G + NK++ +L GQ+E V W
Sbjct: 192 NNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLKSGGQITNKDDFMKLDRLNGQVEVV-W 250
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD ++R+ A
Sbjct: 251 MHIPGHAGYRGNEEADRLSREGA 273
>gi|390179740|ref|XP_001361472.2| GA21286, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388859952|gb|EAL26050.2| GA21286, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 308
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V+GRVTNN EIQ AIHA
Sbjct: 153 IDTEGYVIVYTDGSCIGNGRKGACAGYGVYFGDNHKLNAAKPVSGRVTNNVGEIQAAIHA 212
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+K A+ I ++CI +DSQF+I + W+ W+ GW A+ +PV+N + +E L ++ Q
Sbjct: 213 IKTARDLGIGKLCIYTDSQFLINSITLWVQGWKRRGWMLANNQPVKNVVDFKE-LDELLQ 271
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
+ +K +V H GN AD++AR
Sbjct: 272 NKDIK-NYVEAHKGIKGNEMADKLAR 296
>gi|344280294|ref|XP_003411919.1| PREDICTED: ribonuclease H1-like [Loxodonta africana]
Length = 287
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+KQAK+
Sbjct: 141 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACRAIKQAKA 200
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI+++ + +DS F I + W+P W+ NGWR + GK V NKE+ EL I M+ ++W
Sbjct: 201 QNINKLVLYTDSMFTINGITNWVPGWKKNGWRTSTGKEVINKEDFVELDRLIQGMD-IQW 259
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 260 MHVPGHSGFIGNEEADRLAREGA 282
>gi|391345438|ref|XP_003746993.1| PREDICTED: ribonuclease H1-like [Metaseiulus occidentalis]
Length = 283
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC NG GA AG GVY+G+ +P NV+ + G+ TNN AEIQ A A++QAK
Sbjct: 135 VVYTDGACSGNGMAGAKAGIGVYWGDGDPRNVSEPLKGKPTNNRAEIQAATRAIQQAKEQ 194
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ V I++DS F+++ +WMP WQ W+ A GKPV NKE+ ++LL ++ VKW
Sbjct: 195 GYEEVEIRTDSDFLVQSTTKWMPGWQEKNWKTAAGKPVINKEDFEDLLEASKGID-VKWT 253
Query: 128 FVPGHGNSHGNMKADEMA 145
V GH HGN +AD +A
Sbjct: 254 HVNGHSGIHGNEQADNLA 271
>gi|301611092|ref|XP_002935076.1| PREDICTED: ribonuclease H1-like [Xenopus (Silurana) tropicalis]
Length = 204
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G + NV+ K+ GR TN AEI+ A A++QA+ N
Sbjct: 63 VYTDGCCYRNGQYGANGGIGVYWGPEDSRNVSAKLKGRQTNQRAEIEAACTAVEQARDDN 122
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
I + I +DS+F IK + +W+P+W+ NGW+ DG+ V NK++ Q+L M+ +KW +
Sbjct: 123 ITSLNINTDSKFTIKGMTQWVPRWKENGWKTIDGRDVINKQDFQKLDKACENMD-IKWNY 181
Query: 129 VPGHGNSHGNMKADEMAR 146
VPGH S GN +AD++A+
Sbjct: 182 VPGHSGSVGNDRADQLAK 199
>gi|383852242|ref|XP_003701637.1| PREDICTED: ribonuclease H1-like [Megachile rotundata]
Length = 264
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V V+TDGAC NG+ A AG GV+FG+++PLNV+ V GR TNN AEIQ A
Sbjct: 114 IDSNGYVNVYTDGACSSNGRKNAKAGIGVWFGDDHPLNVSRPVVGRATNNMAEIQAVTVA 173
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+QA A I + I +DSQF+I C+ WMPKW+ NGW+ ++ +PV NK EL E+ +
Sbjct: 174 AQQAAKAGIKNLKINTDSQFLISCITSWMPKWKRNGWKTSNNEPVINKTELLEMEKALNS 233
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
++ V W V GH +GN AD++AR
Sbjct: 234 LD-VTWNHVNGHVGIYGNEMADQLAR 258
>gi|118403524|ref|NP_001072354.1| uncharacterized protein LOC779807 [Xenopus (Silurana) tropicalis]
gi|111305694|gb|AAI21450.1| hypothetical protein MGC146443 [Xenopus (Silurana) tropicalis]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 93/138 (67%), Gaps = 1/138 (0%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G + NV+ K+ GR TN AEI+ A A+KQA+ N
Sbjct: 63 VYTDGCCSRNGQYGANGGIGVYWGPGDSRNVSAKLEGRQTNQRAEIEAARTAVKQARDDN 122
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
I + I +DS+F I + +W+PKW+ NGW+ DG+ V NK++ Q+L M+ ++W +
Sbjct: 123 ITSLQINTDSKFTINGMTQWVPKWKENGWKTVDGRDVINKQDFQKLDKACENMD-IRWNY 181
Query: 129 VPGHGNSHGNMKADEMAR 146
VPGH S GN +AD++A+
Sbjct: 182 VPGHSGSVGNDRADQLAK 199
>gi|47214632|emb|CAG01473.1| unnamed protein product [Tetraodon nigroviridis]
Length = 279
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGKVGA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+ AK
Sbjct: 128 VVVYTDGCCSANGKVGARAGIGVYWGLNHPLNVAERLPGRQTNQRAEIQAACRALELAKE 187
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS+F I V W+ W+ N WR G V NKE+ E L ++ V W
Sbjct: 188 QNIKKLVLYTDSKFTINGVTCWVKNWKLNNWRLKSGGSVTNKEDF-EKLERLNAGLDVVW 246
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH HGN +AD ++R+ A
Sbjct: 247 MHVPGHAGYHGNEQADRLSREGA 269
>gi|332024086|gb|EGI64303.1| Ribonuclease H1 [Acromyrmex echinatior]
Length = 292
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D +V VFTDGAC NG A AG GV+F +N+PLN++ V GR TNN AEIQ A
Sbjct: 140 VDEDGYVNVFTDGACSSNGYKNARAGIGVWFRDNHPLNISEPVNGRPTNNMAEIQAVTVA 199
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
++QAK A I ++ I +DS+F+I C+ +WMP W+ W+ D KPV NK EL E+ + +
Sbjct: 200 VRQAKKAGIKKLKINTDSKFLISCITQWMPAWKRREWKTVDNKPVINKTELLEMEKE-LE 258
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARD 147
+V W V GH HGN AD++AR+
Sbjct: 259 NLTVAWNHVNGHAGIHGNEMADKLARE 285
>gi|432947326|ref|XP_004083990.1| PREDICTED: ribonuclease H1-like isoform 3 [Oryzias latipes]
Length = 307
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 154 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAKE 213
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I ++ + +DS+F I V W+ W+ NGWR G V NKE+ +L ++E V W
Sbjct: 214 HGIQKLVLYTDSKFTINGVTSWVKNWKLNGWRLKSGGLVTNKEDFVKLDELNSELEVV-W 272
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+PGH GN +AD ++R+ AG
Sbjct: 273 LHIPGHSGYTGNEQADRLSREGAG 296
>gi|432947324|ref|XP_004083989.1| PREDICTED: ribonuclease H1-like isoform 2 [Oryzias latipes]
Length = 304
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 151 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAKE 210
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I ++ + +DS+F I V W+ W+ NGWR G V NKE+ +L ++E V W
Sbjct: 211 HGIQKLVLYTDSKFTINGVTSWVKNWKLNGWRLKSGGLVTNKEDFVKLDELNSELEVV-W 269
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+PGH GN +AD ++R+ AG
Sbjct: 270 LHIPGHSGYTGNEQADRLSREGAG 293
>gi|348558346|ref|XP_003464979.1| PREDICTED: ribonuclease H1-like [Cavia porcellus]
Length = 294
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ +I ++ + +DS F I + W+P W+ NGWR + GK V NKE+ E L Q+ + +
Sbjct: 196 KAQDISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTGKEVINKEDF-ERLEQLAEGMDI 254
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W +PGH GN +AD +AR+ A
Sbjct: 255 QWMHIPGHSGFTGNEEADRLAREGA 279
>gi|432947322|ref|XP_004083988.1| PREDICTED: ribonuclease H1-like isoform 1 [Oryzias latipes]
Length = 297
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G N+PLNVA ++ GR TN AEIQ A AL+QAK
Sbjct: 144 VVVYTDGCCSCNGKAGARAGIGVYWGHNHPLNVAERLEGRQTNQRAEIQAACKALQQAKE 203
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I ++ + +DS+F I V W+ W+ NGWR G V NKE+ +L ++E V W
Sbjct: 204 HGIQKLVLYTDSKFTINGVTSWVKNWKLNGWRLKSGGLVTNKEDFVKLDELNSELEVV-W 262
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+PGH GN +AD ++R+ AG
Sbjct: 263 LHIPGHSGYTGNEQADRLSREGAG 286
>gi|213511842|ref|NP_001135083.1| Ribonuclease H1 [Salmo salar]
gi|209738530|gb|ACI70134.1| Ribonuclease H1 [Salmo salar]
Length = 291
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 145 VVVYTDGCCSGNGKAGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 204
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS+F I V W+ W+ N WR G PV NKE+ ++L ++E V W
Sbjct: 205 MNIKKLVLYTDSKFTINGVTSWVKNWKLNNWRLNSGGPVINKEDFEKLDMLNEELEVV-W 263
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+PGH GN +AD ++RD A
Sbjct: 264 LHIPGHAGYLGNEEADRLSRDGAA 287
>gi|410916019|ref|XP_003971484.1| PREDICTED: ribonuclease H1-like [Takifugu rubripes]
Length = 279
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G N+PLNVA +++GR TN AEIQ A AL+ AK
Sbjct: 128 VVVYTDGCCTANGRANARAGIGVYWGLNHPLNVAERLSGRQTNQRAEIQAACRALELAKD 187
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+I ++ + +DS+F I V W+ W+ N WR G P+ NKE+ +L +++ V W
Sbjct: 188 QSIKKLVLYTDSKFTINGVTRWVKNWKKNSWRLKSGGPITNKEDFMKLDRLNAELDVV-W 246
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH HGN +AD ++R+ A
Sbjct: 247 IHIPGHAGYHGNEQADRLSREGA 269
>gi|350405851|ref|XP_003487571.1| PREDICTED: ribonuclease H1-like [Bombus impatiens]
Length = 280
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D V V+TDGAC NG+ A AG GV+FG+++PLNV+ V GR TNNNAEI A
Sbjct: 129 VDGDGFVNVYTDGACTANGRKNAKAGIGVWFGDSHPLNVSEAVVGRATNNNAEIMAVTVA 188
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+QA+ A I + I +DSQF+I C++ W+ W+ GW ++ KPV NK EL E+ +
Sbjct: 189 ARQARKAGITNLKINTDSQFLINCIKYWIHSWKKKGWVTSNNKPVINKNELIEMEEALKP 248
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
+ V W V GH +GN AD++AR
Sbjct: 249 LNVV-WNHVNGHVGIYGNEMADKLAR 273
>gi|225707592|gb|ACO09642.1| Ribonuclease H1 [Osmerus mordax]
Length = 306
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG++GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 152 VVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 211
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS+F I V W+ W+ NGWR G V NKE+ Q+L G++E V W
Sbjct: 212 MNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLNSGGHVINKEDFQKLDKLNGEVEVV-W 270
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD ++R A
Sbjct: 271 LHVPGHAGYLGNEEADRLSRVGA 293
>gi|417398338|gb|JAA46202.1| Putative ribonuclease h1-like protein [Desmodus rotundus]
Length = 284
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HVVV+TDG C RNG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA+
Sbjct: 137 HVVVYTDGCCSRNGRRRPRAGIGVYWGPGHPLNVGVRLPGRQTNQRAEIHAACRAIEQAR 196
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ +ID++ + +DS F I + W+ W+ NGWR + GK V N+E+ EL + M+ ++
Sbjct: 197 AQDIDKLVLYTDSMFTINGITNWLQGWKENGWRTSTGKEVINREDFLELDRLVQGMD-IR 255
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W VPGH GN +AD +A++ A
Sbjct: 256 WMHVPGHSGLVGNEEADRLAKEGA 279
>gi|387018090|gb|AFJ51163.1| Ribonuclease H1-like [Crotalus adamanteus]
Length = 294
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
++V V+TDG C NG+ A AG GVY+G ++PLN + ++ GR TN AEI A A++QA
Sbjct: 146 DYVAVYTDGCCSSNGRQAARAGTGVYWGPDHPLNNSERLHGRQTNQRAEIHAACKAIEQA 205
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS NI ++ I +DS+F I V W+P W+ NGW+ + GK V N+E+ E L ++ + +
Sbjct: 206 KSQNIRKLAIYTDSKFTINGVTSWIPNWKINGWKTSAGKEVTNREDF-ERLAKLSEGMDI 264
Query: 125 KWEFVPGHGNSHGNMKADEMARDAAG 150
+W VPGH GN AD +A++ AG
Sbjct: 265 QWMHVPGHAGFPGNEAADRLAKEGAG 290
>gi|147898893|ref|NP_001084684.1| ribonuclease H1 [Xenopus laevis]
gi|46249528|gb|AAH68735.1| MGC81203 protein [Xenopus laevis]
Length = 300
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C NG+V A AG GVY+G+ +PLN+A K+ GR TN AEIQ A AL+QAK+
Sbjct: 153 VVYTDGCCSGNGRVKARAGIGVYWGQGHPLNLAEKLEGRQTNQRAEIQAACRALEQAKAQ 212
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
N+ ++ + +DS F I + +W+ W+ NGW+ + GK V N+E+ E L ++ Q +KW
Sbjct: 213 NLTKLVLYTDSMFTINGITKWIHSWKRNGWKLSTGKNVINREDF-ENLEKMTQGLDIKWM 271
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
+PGH GN AD+++R+ A
Sbjct: 272 HIPGHAGFAGNEAADKLSREGA 293
>gi|343887422|ref|NP_001230610.1| ribonuclease H1 [Sus scrofa]
Length = 287
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A AL+ AK+
Sbjct: 141 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 200
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+P W+ NGWR + K V NKE+ QE L ++ Q V+W
Sbjct: 201 QNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDFQE-LERLAQGMDVQW 259
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 260 MHVPGHAGFIGNEEADRLAREGA 282
>gi|403182973|gb|EJY57760.1| AAEL017101-PA [Aedes aegypti]
Length = 320
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V V+TDG+C NG A AG GVYFGE + LN + V+GR TNN EIQ A A+
Sbjct: 162 DEDGYVHVYTDGSCEGNGTAAACAGLGVYFGEGHALNTSQPVSGRATNNCGEIQAASLAI 221
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI-GQ 120
+ AK I R+ I +DS+F+I + +WMP W+ N W+ + GKPV+N+ + EL ++ G+
Sbjct: 222 RLAKQHGIKRLTINTDSKFLIDSITKWMPNWKRNQWKLSTGKPVKNQVDFMELDKELAGK 281
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+KW V H GN +AD +AR+ +
Sbjct: 282 NIDIKWNHVDAHCGILGNERADALAREGSA 311
>gi|244790067|ref|NP_001156443.1| ribonuclease H1-like [Acyrthosiphon pisum]
gi|239792775|dbj|BAH72688.1| ACYPI28043 [Acyrthosiphon pisum]
Length = 157
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA-K 65
VVV+ DGACPRNG GA AG GV+F + + LNV+ V G TNNNAEI A+ A+ K
Sbjct: 11 VVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAIDMLLK 70
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ RV I +DS F+ C+ +W+ KW+ NGWR G V NK+ L++L I M+SVK
Sbjct: 71 YTDEYRVEIMTDSMFLCNCMYKWINKWKCNGWRNCKGNTVANKDMLEQLDSCIKAMDSVK 130
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V H +GN +AD++AR A
Sbjct: 131 FTYVRAHNKHYGNDQADKLARQGA 154
>gi|307183362|gb|EFN70220.1| Ribonuclease H1 [Camponotus floridanus]
Length = 296
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D D++V VFTDGAC NG A AG GV+F +N+PLNV+ V GR TNN AEIQ A
Sbjct: 143 VDEDDYVNVFTDGACSSNGYKNAQAGIGVWFRDNHPLNVSQPVVGRPTNNMAEIQAVTVA 202
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+QAK A I ++ I +DS+F+I C+ +WMP W+ GW+ + KPV NK+EL E+ ++
Sbjct: 203 ARQAKKAGIKKLKINTDSKFVISCITQWMPSWKKRGWKTIENKPVINKKELLEMEKELES 262
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARD 147
+ +V W V GH +GN AD++A++
Sbjct: 263 L-TVAWNHVNGHIGIYGNEMADKLAKE 288
>gi|148231538|ref|NP_001089336.1| uncharacterized protein LOC734386 [Xenopus laevis]
gi|62027455|gb|AAH92118.1| MGC115038 protein [Xenopus laevis]
Length = 204
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C RNG+ GA+ G GVY+G N+ NV+ ++ GR TN AEI+ A A KQA++ N
Sbjct: 63 VYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQARNDN 122
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+ + I +DS+F I + +W+P+W+ N W+ DG+ V NK++ Q+L M+ VKW +
Sbjct: 123 VTHLEINTDSKFTIDGMTKWVPRWKENNWKTIDGRDVINKQDFQKLDKACENMD-VKWNY 181
Query: 129 VPGHGNSHGNMKADEMAR 146
VPGH + GN AD++A+
Sbjct: 182 VPGHSGNAGNEMADQLAK 199
>gi|194220992|ref|XP_001502934.2| PREDICTED: ribonuclease H1-like [Equus caballus]
Length = 359
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 208 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKA 267
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI+++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 268 QNINKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKEVTNKEDFVE-LDRLTQGMDIQW 326
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 327 MHVPGHSGFAGNEEADRLAREGA 349
>gi|351714605|gb|EHB17524.1| Ribonuclease H1 [Heterocephalus glaber]
Length = 308
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ ++V+TDG C NG+ A AG GVY+G ++PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSIIVYTDGCCSSNGRRRARAGIGVYWGPSHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
++ NI ++ + +DS F I + W+P W+ NGWR + GK V NKE+ L M+ +
Sbjct: 196 RAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTGKEVINKEDFMRLEGLTRGMD-I 254
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W +PGH GN +AD +AR+ A
Sbjct: 255 QWMHIPGHSGFTGNEEADRLAREGA 279
>gi|114050737|ref|NP_001039970.1| ribonuclease H1 [Bos taurus]
gi|86438465|gb|AAI12855.1| Ribonuclease H1 pseudogene 1 [Bos taurus]
gi|296484317|tpg|DAA26432.1| TPA: ribonuclease H1 [Bos taurus]
Length = 280
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ +I ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ + +
Sbjct: 192 KAQDITKLVLYTDSMFTINGITTWVKGWKQNGWRTSTGKEVTNKEDFAE-LERLARGMDI 250
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 251 QWMHVPGHSGFRGNEEADRLAREGA 275
>gi|50540386|ref|NP_001002659.1| ribonuclease H1 [Danio rerio]
gi|49900309|gb|AAH76457.1| Ribonuclease H1 [Danio rerio]
gi|182891492|gb|AAI64625.1| Rnaseh1 protein [Danio rerio]
Length = 276
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++P NVA ++ GR TN AE+Q A AL+QAK
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKE 189
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
N +V + +DS+F I V W+ W+SNGWR G + NK++ Q+L +++ V W
Sbjct: 190 MNFKKVVLYTDSKFTINGVTSWVKTWKSNGWRLKSGGVIINKDDFQQLDKLNAELDVV-W 248
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD ++R+ A
Sbjct: 249 MHIPGHAGYTGNEEADRLSREGA 271
>gi|354495311|ref|XP_003509774.1| PREDICTED: ribonuclease H1 [Cricetulus griseus]
gi|344254547|gb|EGW10651.1| Ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGFRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ EL M+ +KW
Sbjct: 199 QNISKLVLYTDSMFTINGITSWVQGWKKNGWRTSTGKDVINKEDFMELDELTRGMD-IKW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|61556933|ref|NP_001013115.1| ribonuclease H1 [Rattus norvegicus]
gi|81909480|sp|Q5BK46.1|RNH1_RAT RecName: Full=Ribonuclease H1; Short=RNase H1
gi|60688306|gb|AAH91209.1| Ribonuclease H1 [Rattus norvegicus]
gi|149051044|gb|EDM03217.1| ribonuclease H1, isoform CRA_a [Rattus norvegicus]
Length = 285
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|336088093|dbj|BAK39906.1| ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGFRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ EL M+ +KW
Sbjct: 199 QNISKLVLYTDSMFTINGITSWVQGWKKNGWRTSTGKDVINKEDFMELDELTRGMD-IKW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|321471007|gb|EFX81981.1| hypothetical protein DAPPUDRAFT_35962 [Daphnia pulex]
Length = 146
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 98/145 (67%), Gaps = 3/145 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV--TGRVTNNNAEIQGAIHALKQA 64
V+V+TDGAC RNG+ GA AG GV+F ++PLNV+ ++ TNN AEI+ I ALK
Sbjct: 1 VIVYTDGACLRNGQPGAQAGIGVWFDYDHPLNVSQQLNRIDPATNNVAEIKAVIEALKIV 60
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K ++++ I +DS ++I V +W+ W S+ WRK DG+P+++K++ +EL+ + ++ +
Sbjct: 61 KFYGVEKLAIHTDSMYLINSVTKWIFSWLSSDWRKRDGEPIKHKKQYRELVKAMADVD-I 119
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
W +V GHG+ GN++AD +AR A
Sbjct: 120 TWVYVKGHGSHEGNIEADHLARQGA 144
>gi|395852160|ref|XP_003798608.1| PREDICTED: ribonuclease H1 [Otolemur garnettii]
Length = 287
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 139 DSVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 198
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGWR + GK V NKE+ L ++ Q +
Sbjct: 199 KAQNINKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKEVINKEDFM-ALEELTQDMDI 257
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W +PGH GN +AD +AR+ A
Sbjct: 258 QWMHIPGHSGFTGNEEADRLAREGA 282
>gi|259089333|ref|NP_001158704.1| Ribonuclease H1 [Oncorhynchus mykiss]
gi|225704990|gb|ACO08341.1| Ribonuclease H1 [Oncorhynchus mykiss]
Length = 280
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++PLNVA + GR TN AE+Q A AL+QAK
Sbjct: 134 VVVYTDGCCSGNGKPGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALEQAKE 193
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+I ++ + +DS+F I V W+ W+ N WR G P+ N+E+ E L ++ + V W
Sbjct: 194 MDIKKLVLYTDSKFTINGVTSWVKNWKLNNWRLKSGGPIINREDF-EKLDKLNEELKVVW 252
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+PGH GN +AD ++R+ A
Sbjct: 253 LHIPGHAGYLGNEEADRLSREGAA 276
>gi|226246542|ref|NP_035405.2| ribonuclease H1 [Mus musculus]
Length = 285
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|45384532|ref|NP_990329.1| ribonuclease H1 precursor [Gallus gallus]
gi|516686|dbj|BAA05382.1| unnamed protein product [Gallus gallus]
Length = 293
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 147 AVVYTDGCCSGNGRNRARAGIGVYWGPGHPLNISERLPGRQTNQRAEIHAACKAIEQAKS 206
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ I +DS+F I + W+ W++NGWR + G V NKE+ Q+ L + + ++W
Sbjct: 207 QNIKKLIIYTDSKFTINGITSWVENWKTNGWRTSSGGSVINKEDFQK-LDSLSKGIEIQW 265
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 266 MHIPGHAGFQGNEEADRLAREGA 288
>gi|334312524|ref|XP_001381337.2| PREDICTED: ribonuclease H1-like [Monodelphis domestica]
Length = 342
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G +PLNVA ++ GR TN AEI A A++QAK+
Sbjct: 194 AVVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVADRLLGRQTNQRAEIHAACKAIEQAKN 253
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ + L + Q +KW
Sbjct: 254 QNINKLVLYTDSMFTINGITSWIKDWKKNGWKTSTGKEVINKEDFVK-LDTLTQGIDIKW 312
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 313 IHVPGHSGFAGNEEADRLAREGA 335
>gi|224048680|ref|XP_002197364.1| PREDICTED: ribonuclease H1 [Taeniopygia guttata]
Length = 299
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV+TDG C NG+ A AG GVY+G +PLN + ++ GR TN AEI A A++QA
Sbjct: 151 DFAVVYTDGCCTSNGRSRARAGIGVYWGPGHPLNTSERLPGRQTNQRAEIHAACRAIEQA 210
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ I +DS+F I + W+ W++NGWR + G V NKE+ + L + +E +
Sbjct: 211 KTQNIKKLIIYTDSKFTINGITSWVDNWKTNGWRTSSGGSVINKEDFERLDNLAKDIE-I 269
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W +PGH GN +AD +AR+ A
Sbjct: 270 QWMHIPGHAGFQGNEEADRLAREGA 294
>gi|13878717|sp|O70338.1|RNH1_MOUSE RecName: Full=Ribonuclease H1; Short=RNase H1
gi|2935418|gb|AAC78562.1| ribonuclease H1 [Mus musculus]
Length = 285
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|18044436|gb|AAH19411.1| Ribonuclease H1 [Mus musculus]
Length = 285
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>gi|26352958|dbj|BAC40109.1| unnamed protein product [Mus musculus]
Length = 153
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 7 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 66
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 67 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 125
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 126 MHIPGHSGFVGNEEADRLAREGA 148
>gi|307214302|gb|EFN89389.1| Ribonuclease H1 [Harpegnathos saltator]
Length = 235
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D +V VFTDGAC NG A AG GV+F +++PLNV+ V GR TNN AEIQ A
Sbjct: 79 DKDGYVNVFTDGACSSNGYKNARAGIGVWFQDHHPLNVSQPVEGRPTNNMAEIQAVTVAA 138
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+QAK A I ++ I +DS+F+I C+ EWM KW+S GW KPV NK EL E+ + +
Sbjct: 139 RQAKKAGIKKLRINTDSKFLILCITEWMSKWKSRGWLTVGNKPVINKVELLEMEKE-LEP 197
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARD 147
V W V GH HGN AD++AR+
Sbjct: 198 LIVAWNHVNGHAGIHGNEMADKLARE 223
>gi|148705006|gb|EDL36953.1| ribonuclease H1, isoform CRA_a [Mus musculus]
Length = 286
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 140 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 199
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 200 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 258
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 259 MHIPGHSGFVGNEEADRLAREGA 281
>gi|431911810|gb|ELK13954.1| Ribonuclease H1 [Pteropus alecto]
Length = 285
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H +V+TDG C RNG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QA+
Sbjct: 138 HAIVYTDGCCSRNGRHRARAGIGVYWGPGHPLNISVRLPGRQTNQRAEIHAACKAIEQAR 197
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ I ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++
Sbjct: 198 AQRISKLALYTDSMFTINGITNWVEGWKKNGWRTSTGKEVINKEDFAE-LERLTQGMDIQ 256
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +PGH GN +AD +AR A
Sbjct: 257 WMHIPGHSGFVGNEEADRLARLGA 280
>gi|326916464|ref|XP_003204527.1| PREDICTED: ribonuclease H1-like [Meleagris gallopavo]
Length = 253
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV+TDG C NG+ A AG GVY+G ++PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 107 AVVYTDGCCSGNGRNRARAGIGVYWGPDHPLNISERLPGRQTNQRAEIHAACKAIEQAKS 166
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ I +DS+F I + W+ W++NGW+ + G V NKE+ Q+ L + + ++W
Sbjct: 167 QNIKKLIIYTDSKFTINGITSWVENWKTNGWKTSSGGSVINKEDFQK-LDSLSKGIEIQW 225
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 226 MHIPGHAGFQGNEEADRLAREGA 248
>gi|291409767|ref|XP_002721174.1| PREDICTED: ribonuclease H1 [Oryctolagus cuniculus]
Length = 286
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAK+
Sbjct: 140 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNLSIRLPGRQTNQRAEIHAACKAIEQAKA 199
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ + L + Q ++W
Sbjct: 200 QNIHKLVLYTDSMFTINGITNWVEGWKKNGWRTSAGKEVINKEDFMQ-LESLTQGMDIQW 258
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 259 MHVPGHSGFTGNEEADRLAREGA 281
>gi|242008555|ref|XP_002425068.1| asparagine-rich protein, putative [Pediculus humanus corporis]
gi|212508733|gb|EEB12330.1| asparagine-rich protein, putative [Pediculus humanus corporis]
Length = 710
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V V+TDG C NGK A AG G++FG+++PLNV+ + G TNN AEIQ A A
Sbjct: 546 VDKNEYVQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVA 605
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
++ A A I ++ I +DS F+I C +W+ +W+ NGW DG V+N+EEL++ L + Q
Sbjct: 606 MELAIKAGIKKLKIFTDSSFLINCATKWIRRWKKNGWTLVDGGKVKNREELEK-LDLVAQ 664
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
VKWE V GH GN AD +A A
Sbjct: 665 KLKVKWEKVEGHSGIKGNEMADRLANAGA 693
>gi|322791341|gb|EFZ15831.1| hypothetical protein SINV_13418 [Solenopsis invicta]
Length = 154
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V VFTDGAC NG A AG GV+F +N+PLNV+ V GR TNN AEIQ A
Sbjct: 8 VDEEGYVNVFTDGACSSNGYKNARAGIGVWFKDNHPLNVSKPVEGRCTNNMAEIQAVTVA 67
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+QAK A I ++ I +DS+F+I C+ +WMP W+ GW A+ KPV NK EL E+ + +
Sbjct: 68 ARQAKKAGIKKLKINTDSKFLISCITKWMPNWKKKGWITANNKPVINKTELLEMERE-LE 126
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARD 147
++ W V GH +GN AD++A++
Sbjct: 127 SLTIAWNHVNGHVGIYGNEMADKLAKE 153
>gi|301787875|ref|XP_002929354.1| PREDICTED: ribonuclease H1-like [Ailuropoda melanoleuca]
Length = 285
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ Q ++W
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFV-ALEQLTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 258 MHVPGHSGFTGNEEADRLAREGA 280
>gi|281341314|gb|EFB16898.1| hypothetical protein PANDA_019509 [Ailuropoda melanoleuca]
Length = 241
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 95 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 154
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ Q ++W
Sbjct: 155 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFV-ALEQLTQGMDIQW 213
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 214 MHVPGHSGFTGNEEADRLAREGA 236
>gi|291220697|ref|XP_002730361.1| PREDICTED: ribonuclease H1-like [Saccoglossus kowalevskii]
Length = 309
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V V+TDG C NG+ GA AG GVY+G +P N++ +V GR TN AEI+ A AL+ A
Sbjct: 162 DRVAVYTDGCCTSNGRRGARAGLGVYWGPCHPRNISERVDGRQTNQRAEIKAASRALECA 221
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
NI + I +DS F I C+ +W+ W+ N W+ G V NKEE+ EL Q++ V
Sbjct: 222 IEMNIKSITIYTDSMFTINCITQWIHNWKRNNWKTKSGV-VVNKEEIVELDALCKQID-V 279
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
KW VPGH N HGN +AD++A+ A
Sbjct: 280 KWVHVPGHSNIHGNEEADKLAKAGA 304
>gi|449283665|gb|EMC90270.1| Ribonuclease H1, partial [Columba livia]
Length = 256
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV+TDG C NG+ A AG GVY+G +PLN + ++ GR TN AEI A A++QA
Sbjct: 108 DFAVVYTDGCCSGNGRNRARAGIGVYWGPGHPLNTSERLPGRQTNQRAEIHAACKAIEQA 167
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS NI ++ I +DS+F I + W+ W++NGWR + G V NKE+ E L + + +
Sbjct: 168 KSQNIKKLIIYTDSKFTINGITSWVDNWKTNGWRTSSGGSVINKEDF-ERLDNLSKGIEI 226
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 227 QWMHVPGHAGFQGNEEADRLAREGA 251
>gi|189233976|ref|XP_001810667.1| PREDICTED: similar to GA21286-PA [Tribolium castaneum]
gi|270014569|gb|EFA11017.1| hypothetical protein TcasGA2_TC004604 [Tribolium castaneum]
Length = 231
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
++V V+TDGAC NG+ GA AG GV+FG+N+PLNV+ V G+ TNN AEIQ I A++ A
Sbjct: 82 DYVTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICAVQIA 141
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGK-PVQNKEELQELLHQIGQMES 123
+ I ++ I +DSQF I + +W+ W+ N W+ + K PV+NK + QE L ++ +
Sbjct: 142 RDNGIKKLQIITDSQFTINAMTKWIKSWKKNNWKLSSSKNPVKNKTDFQE-LDKLCEGLD 200
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W+ V GH GN AD +AR+ A
Sbjct: 201 VQWQHVAGHSGIKGNECADMLAREGA 226
>gi|443710129|gb|ELU04460.1| hypothetical protein CAPTEDRAFT_135802, partial [Capitella teleta]
Length = 146
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDG C NG+ AG GVY+G N N+A K+ GR TNN AEI A A++QAK
Sbjct: 3 VSVYTDGCCHDNGRGDPRAGIGVYWGPGNERNLAEKLYGRQTNNRAEIYAAHRAIEQAKE 62
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI + I +DSQF+I C+ +W+ W+ GW+ GK V N+EEL E L + Q +V+W
Sbjct: 63 MNIQNLVIFTDSQFLISCITKWIQNWKKRGWKTTSGKAVINREEL-ENLDSVMQGINVRW 121
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E V GH GN AD++A + A
Sbjct: 122 EHVKGHSGVEGNEMADQLANEGA 144
>gi|340376377|ref|XP_003386709.1| PREDICTED: ribonuclease H1-like [Amphimedon queenslandica]
Length = 244
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DG+C RNGK GA AG GVY+ EN+ NV+ +++G+ TN AE+ A A++
Sbjct: 102 VVYSDGSCYRNGKTGARAGIGVYWEENSIWNVSERLSGKQTNQRAELLSATRAIETGIRR 161
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ + I++DS + I V +W KW+ NGW+ DG PVQNK+E++ +L Q+ +V W+
Sbjct: 162 KMKTIEIRTDSMYTINAVTKWCHKWKLNGWKVTDGSPVQNKDEIKNILALSKQI-NVIWK 220
Query: 128 FVPGHGNSHGNMKADEMAR 146
V GH HGN +ADE+AR
Sbjct: 221 HVKGHSGDHGNERADELAR 239
>gi|355716669|gb|AES05685.1| ribonuclease H1 [Mustela putorius furo]
Length = 284
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNIGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V N+E+ L Q+ Q ++W
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINREDFV-ALEQLAQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 258 MHVPGHSGFVGNEEADRLAREGA 280
>gi|395507260|ref|XP_003757945.1| PREDICTED: ribonuclease H1 [Sarcophilus harrisii]
Length = 206
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 59 VVYTDGCCSSNGRRKARAGIGVYWGPGHPLNVGDRLPGRQTNQRAEIHAACKAIEQAKNQ 118
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ +L I Q +KW
Sbjct: 119 NISKLVLYTDSMFTINGITSWVKDWKKNGWKTSTGKEVINKEDFVKLDTLI-QGIDIKWI 177
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 178 HVPGHSGFAGNEEADRLAREGA 199
>gi|148233804|ref|NP_001090055.1| ribonuclease H1 [Xenopus laevis]
gi|66911791|gb|AAH97857.1| MGC115609 protein [Xenopus laevis]
Length = 292
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV+TDG C +NG++ A AG GVY+G +PLN+A ++ GR TN AEIQ A AL+QA
Sbjct: 143 DSAVVYTDGCCSQNGRLKAQAGIGVYWGPGHPLNLAERLEGRQTNQRAEIQAACRALEQA 202
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
++ NI ++ + +DS F I + +W+ W+ GW+ ++G+ V N+E+ E L ++ + +
Sbjct: 203 QAKNITKLVLYTDSMFTINGITKWIHSWKRKGWKLSNGQNVINREDF-EKLDKLTRGLDI 261
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
W +PGH GN AD+++R+ A
Sbjct: 262 NWMHIPGHAGFEGNEAADKLSREGA 286
>gi|73979924|ref|XP_532858.2| PREDICTED: ribonuclease H1 [Canis lupus familiaris]
Length = 285
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ Q ++W
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFV-ALEQLTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 258 MHVPGHSGFTGNEEADRLAREGA 280
>gi|410955906|ref|XP_003984589.1| PREDICTED: ribonuclease H1 [Felis catus]
Length = 277
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLN+ ++ GR TN AEI A A++QA
Sbjct: 129 DFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNLGIRLPGRQTNQRAEIHAACKAIEQA 188
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ +
Sbjct: 189 KAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKDVINKEDFV-ALEQLTHGMDI 247
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 248 QWMHVPGHSGFTGNEEADRLAREGA 272
>gi|158297078|ref|XP_317369.4| AGAP008088-PA [Anopheles gambiae str. PEST]
gi|157015022|gb|EAA12293.4| AGAP008088-PA [Anopheles gambiae str. PEST]
Length = 294
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D V V+TDG+C NG A AG GVYF E + LN A V+GR TNN EIQ A A+
Sbjct: 136 DEDGFVHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSGRATNNCGEIQAASLAI 195
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ A+ I R+ + +DSQF+I + +W+P W+ W A G PV+N+ + EL ++
Sbjct: 196 RLARQQGIRRLVVNTDSQFLINAITKWLPGWKRRNWTLASGGPVKNQTDFMELERELSAG 255
Query: 122 E-SVKWEFVPGHGNSHGNMKADEMAR 146
+ +KW V H GN +AD++AR
Sbjct: 256 DIQIKWNHVDAHCGILGNERADQLAR 281
>gi|61372889|gb|AAX43931.1| ribonuclease H1 [synthetic construct]
Length = 287
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVA-LERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|193788502|dbj|BAG53396.1| unnamed protein product [Homo sapiens]
Length = 169
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 21 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 80
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 81 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVA-LERLTQGMDI 139
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 140 QWMHVPGHSGFIGNEEADRLAREGA 164
>gi|49456597|emb|CAG46619.1| RNASEH1 [Homo sapiens]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|21359816|ref|NP_002927.2| ribonuclease H1 precursor [Homo sapiens]
gi|13878716|sp|O60930.2|RNH1_HUMAN RecName: Full=Ribonuclease H1; Short=RNase H1; AltName:
Full=Ribonuclease H type II
gi|3004981|gb|AAC09261.1| ribonuclease H type II [Homo sapiens]
gi|12804229|gb|AAH02973.1| Ribonuclease H1 [Homo sapiens]
gi|60655541|gb|AAX32334.1| ribonuclease H1 [synthetic construct]
gi|62420309|gb|AAX82026.1| unknown [Homo sapiens]
gi|119621466|gb|EAX01061.1| ribonuclease H1 [Homo sapiens]
gi|123984355|gb|ABM83523.1| ribonuclease H1 [synthetic construct]
gi|123998297|gb|ABM86750.1| ribonuclease H1 [synthetic construct]
gi|193786833|dbj|BAG52156.1| unnamed protein product [Homo sapiens]
gi|311347258|gb|ADP90574.1| ribonuclease H1 [Homo sapiens]
gi|311347260|gb|ADP90575.1| ribonuclease H1 [Homo sapiens]
gi|311347262|gb|ADP90576.1| ribonuclease H1 [Homo sapiens]
gi|311347264|gb|ADP90577.1| ribonuclease H1 [Homo sapiens]
gi|311347266|gb|ADP90578.1| ribonuclease H1 [Homo sapiens]
gi|311347268|gb|ADP90579.1| ribonuclease H1 [Homo sapiens]
gi|311347270|gb|ADP90580.1| ribonuclease H1 [Homo sapiens]
gi|311347272|gb|ADP90581.1| ribonuclease H1 [Homo sapiens]
gi|311347274|gb|ADP90582.1| ribonuclease H1 [Homo sapiens]
gi|311347276|gb|ADP90583.1| ribonuclease H1 [Homo sapiens]
gi|311347278|gb|ADP90584.1| ribonuclease H1 [Homo sapiens]
gi|311347280|gb|ADP90585.1| ribonuclease H1 [Homo sapiens]
gi|311347282|gb|ADP90586.1| ribonuclease H1 [Homo sapiens]
gi|311347284|gb|ADP90587.1| ribonuclease H1 [Homo sapiens]
gi|311347286|gb|ADP90588.1| ribonuclease H1 [Homo sapiens]
gi|311347288|gb|ADP90589.1| ribonuclease H1 [Homo sapiens]
gi|311347290|gb|ADP90590.1| ribonuclease H1 [Homo sapiens]
gi|311347292|gb|ADP90591.1| ribonuclease H1 [Homo sapiens]
gi|311347294|gb|ADP90592.1| ribonuclease H1 [Homo sapiens]
gi|311347296|gb|ADP90593.1| ribonuclease H1 [Homo sapiens]
gi|311347298|gb|ADP90594.1| ribonuclease H1 [Homo sapiens]
gi|311347300|gb|ADP90595.1| ribonuclease H1 [Homo sapiens]
gi|311347302|gb|ADP90596.1| ribonuclease H1 [Homo sapiens]
gi|311347304|gb|ADP90597.1| ribonuclease H1 [Homo sapiens]
gi|311347306|gb|ADP90598.1| ribonuclease H1 [Homo sapiens]
gi|311347308|gb|ADP90599.1| ribonuclease H1 [Homo sapiens]
gi|311347310|gb|ADP90600.1| ribonuclease H1 [Homo sapiens]
gi|311347312|gb|ADP90601.1| ribonuclease H1 [Homo sapiens]
gi|311347314|gb|ADP90602.1| ribonuclease H1 [Homo sapiens]
gi|311347316|gb|ADP90603.1| ribonuclease H1 [Homo sapiens]
gi|311347318|gb|ADP90604.1| ribonuclease H1 [Homo sapiens]
gi|311347320|gb|ADP90605.1| ribonuclease H1 [Homo sapiens]
gi|311347322|gb|ADP90606.1| ribonuclease H1 [Homo sapiens]
gi|311347324|gb|ADP90607.1| ribonuclease H1 [Homo sapiens]
gi|311347326|gb|ADP90608.1| ribonuclease H1 [Homo sapiens]
gi|311347328|gb|ADP90609.1| ribonuclease H1 [Homo sapiens]
gi|311347330|gb|ADP90610.1| ribonuclease H1 [Homo sapiens]
gi|311347332|gb|ADP90611.1| ribonuclease H1 [Homo sapiens]
gi|311347334|gb|ADP90612.1| ribonuclease H1 [Homo sapiens]
gi|311347336|gb|ADP90613.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|3043447|emb|CAA11835.1| RNase HII [Homo sapiens]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVRGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|2935442|gb|AAC78563.1| ribonuclease H1 [Homo sapiens]
gi|2935444|gb|AAC78564.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|403297220|ref|XP_003939475.1| PREDICTED: ribonuclease H1 [Saimiri boliviensis boliviensis]
Length = 284
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 136 DSVVVYTDGCCCSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 196 KAQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFV-ALERLTQGMDI 254
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 255 QWMHVPGHSGFTGNEEADRLAREGA 279
>gi|114575921|ref|XP_001150506.1| PREDICTED: ribonuclease H1 isoform 2 [Pan troglodytes]
gi|397471807|ref|XP_003807469.1| PREDICTED: ribonuclease H1 [Pan paniscus]
gi|410214322|gb|JAA04380.1| ribonuclease H1 [Pan troglodytes]
gi|410253442|gb|JAA14688.1| ribonuclease H1 [Pan troglodytes]
gi|410298660|gb|JAA27930.1| ribonuclease H1 [Pan troglodytes]
gi|410334637|gb|JAA36265.1| ribonuclease H1 [Pan troglodytes]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|54696206|gb|AAV38475.1| ribonuclease H1 [synthetic construct]
gi|61366338|gb|AAX42845.1| ribonuclease H1 pseudogene 1 [synthetic construct]
Length = 287
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|54696208|gb|AAV38476.1| ribonuclease H1 [Homo sapiens]
Length = 286
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>gi|198423486|ref|XP_002128178.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 282
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC +NG+ G+ AGYGV++G+++ LN + ++ G TN AEI A+KQA
Sbjct: 133 VVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
++ I++DS+F+I C+ +W+ W GW KADGKPV +K E QE+L + ++ +VK+E
Sbjct: 193 GHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKI-NVKFE 251
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
V GH ++GN AD++A A
Sbjct: 252 HVFGHRGNYGNEMADKLAVQGA 273
>gi|383872358|ref|NP_001244787.1| ribonuclease H1 precursor [Macaca mulatta]
gi|380811294|gb|AFE77522.1| ribonuclease H1 [Macaca mulatta]
gi|383408989|gb|AFH27708.1| ribonuclease H1 [Macaca mulatta]
gi|384946204|gb|AFI36707.1| ribonuclease H1 [Macaca mulatta]
Length = 286
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KAQNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFVA-LERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLARKGA 281
>gi|355569653|gb|EHH25473.1| hypothetical protein EGK_21266 [Macaca mulatta]
Length = 286
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KAQNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFVA-LERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLARKGA 281
>gi|260829299|ref|XP_002609599.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
gi|229294961|gb|EEN65609.1| hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae]
Length = 203
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D VV+TDG C NG GASAG GVY+G + N++ K+ GR TNN AEI A +A++
Sbjct: 47 DGAAVVYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIES 106
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
AK + ++ + +DSQF+I + +W+ W+ NGW+ + GKPVQNKE+ Q L + Q
Sbjct: 107 AKEMGLAKISLHTDSQFLINGITKWIHGWKKNGWKLSTGKPVQNKEDFQSLDSAL-QGID 165
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W V GH GN AD +A++ +
Sbjct: 166 VQWVHVRGHVGVPGNEAADGLAKEGS 191
>gi|160285882|pdb|2QKB|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
gi|160285883|pdb|2QKB|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
Length = 154
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 65
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + ++S F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 66 KTQNINKLVLYTNSXFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVA-LERLTQGXDI 124
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 125 QWXHVPGHSGFIGNEEADRLAREGA 149
>gi|160285878|pdb|2QK9|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 18-Mer RnaDNA HYBRID
gi|160285887|pdb|2QKK|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285888|pdb|2QKK|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285891|pdb|2QKK|E Chain E, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285892|pdb|2QKK|F Chain F, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285895|pdb|2QKK|I Chain I, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285896|pdb|2QKK|J Chain J, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285899|pdb|2QKK|M Chain M, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285900|pdb|2QKK|N Chain N, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285903|pdb|2QKK|R Chain R, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285904|pdb|2QKK|S Chain S, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
gi|160285907|pdb|2QKK|W Chain W, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
Length = 154
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 65
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + ++S F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 66 KTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVA-LERLTQGMDI 124
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 125 QWMHVPGHSGFIGNEEADRLAREGA 149
>gi|444721603|gb|ELW62330.1| Ribonuclease H1, partial [Tupaia chinensis]
Length = 254
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 98 DFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGVRLPGRQTNQRAEIHAACKAIEQA 157
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
++ NI ++ + +DS F I + W+P W+ NGW+ + GK V N+E+ L ME +
Sbjct: 158 RAQNISKLVLYTDSMFTINGITNWVPGWKKNGWKTSTGKEVVNREDFAALERLTQGME-I 216
Query: 125 KWE--------FVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 217 QWASTRANALMHVPGHAGFIGNEEADRLAREGA 249
>gi|402889986|ref|XP_003908276.1| PREDICTED: ribonuclease H1 [Papio anubis]
Length = 286
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KAQNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W +PGH GN +AD +A+ A
Sbjct: 257 QWMHIPGHSGFIGNEEADRLAKKGA 281
>gi|355765002|gb|EHH62348.1| hypothetical protein EGM_20653 [Macaca fascicularis]
Length = 286
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KAQNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +A +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEAGRLAREGA 281
>gi|321472337|gb|EFX83307.1| hypothetical protein DAPPUDRAFT_223388 [Daphnia pulex]
Length = 163
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK------VTGRVTNNNAEI 54
+D + +V+V+ DGACP NG GA G GV+FG N+PLNV+ + TN AEI
Sbjct: 11 VDRNGYVIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHTNPTNQVAEI 70
Query: 55 QGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
+ AI A + ++ ++RV I +DSQ++I + +W+ WQSNGWR G+PV +K +EL
Sbjct: 71 KAAIRACELLRNYGVERVVIFTDSQYLIDSITDWIFTWQSNGWRTYQGQPVVHKALYEEL 130
Query: 115 LHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
L + V+W VP H N KAD +A+ A
Sbjct: 131 LFWTRDFDCVEWSHVPSHYN-----KADSLAKIGA 160
>gi|321446744|gb|EFX60940.1| hypothetical protein DAPPUDRAFT_340962 [Daphnia pulex]
Length = 159
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR------VTNNNAEI 54
+D + +V+V+ DGACP NG GA G GV+FG N+PLNV+ + TN AEI
Sbjct: 7 VDRNGYVIVYIDGACPGNGIQGARGGIGVWFGNNHPLNVSEPLRRHEFIHINPTNQVAEI 66
Query: 55 QGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
+ AI A + ++ ++RV I +DSQ++I + +W+ WQSNGWR G+PV +K +EL
Sbjct: 67 KAAIRACELLRNYGVERVVIFTDSQYLIDSITDWIFTWQSNGWRTYQGQPVVHKALYEEL 126
Query: 115 LHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
L + V+W VP H N KAD +A+ A
Sbjct: 127 LFLTRGFDCVEWSHVPSHYN-----KADSLAKIGA 156
>gi|339257342|ref|XP_003370041.1| ubiquitin-conjugating enzyme E22 [Trichinella spiralis]
gi|316965396|gb|EFV50118.1| ubiquitin-conjugating enzyme E22 [Trichinella spiralis]
Length = 248
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ ++ V +TDGAC NGK+GA AG GVY+GEN+P N++ + G TNN AEI+ A+
Sbjct: 109 EKNSFAVCYTDGACVNNGKLGARAGIGVYWGENDPRNISEPLKGLQTNNRAEIEACSRAI 168
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+QAK I + I++D +WMPKW+ N W K DG+ V+N E+L L ++
Sbjct: 169 EQAKRDGITHLEIRTD---------KWMPKWRKNNWIKPDGEMVKNLEDLM-YLDKLANS 218
Query: 122 ESVKWEFVPGHGNSHGNMKADEMAR 146
SVKW +V H + GN KAD +A+
Sbjct: 219 ISVKWTYVVAHNGTEGNEKADMLAK 243
>gi|324523182|gb|ADY48204.1| Ribonuclease H1 [Ascaris suum]
Length = 250
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAKS 66
VVFTDGAC NG GA AG GV++G+++P NV+ ++G TNN AE+ I AL+ A
Sbjct: 104 VVFTDGACSSNGHHGAKAGIGVFWGDDHPDNVSEPLISGPPTNNRAELSAVITALRTACE 163
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIGQMES 123
N R+ I +DS +IK + W+ W+ NGW+ A+G V+NK+ EL +LL ++
Sbjct: 164 RNFSRLIICTDSNLLIKSMNSWIKTWRKNGWKTANGGDVKNKDLIVELDKLLEKV----K 219
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V ++ V GH +GN KADE+AR+ A
Sbjct: 220 VHFKHVAGHAGIYGNEKADELARNGA 245
>gi|156379280|ref|XP_001631386.1| predicted protein [Nematostella vectensis]
gi|156218425|gb|EDO39323.1| predicted protein [Nematostella vectensis]
Length = 272
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C RNG GA AG GVY+G N+ N++ ++ GR TN AEI A AL+ AK
Sbjct: 127 VVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESAKEM 186
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+V I++DS++ I + W+ W+ NGW+ AD K V+N E+ Q+L +++ V W
Sbjct: 187 GFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNLEDFQKLDKLCSEID-VHWT 245
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
V GH GN AD++A+ A
Sbjct: 246 HVAGHAGIEGNEIADQLAKGGA 267
>gi|225710246|gb|ACO10969.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 257
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
++ + V VFTDGAC NG+ GA AG G YFG +P N++ V+G TNN+AEIQ
Sbjct: 108 LNKEGWVKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQ 167
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
A++ K+ +V I +DS+F I V+ W+ W+ NGW+K+ G V NK + + L I
Sbjct: 168 AIQSVKNEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKADFIQ-LDDIR 226
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ SVK+ V GH HGN AD++AR+ A
Sbjct: 227 KGMSVKFIHVRGHQGIHGNEMADQLAREGA 256
>gi|405976256|gb|EKC40769.1| Ribonuclease H1 [Crassostrea gigas]
Length = 372
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C NG+ AG GVY+G ++P NV+ ++ GR TNN AEI A A+KQAK
Sbjct: 222 VYTDGCCRNNGRDNPVAGVGVYWGPDHPSNVSERLPGRATNNRAEIHAARIAVKQAKEKG 281
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+ V + +DSQF+I + W+ KW+ NGW +D V+N+E+ + L ++ ++ VK++
Sbjct: 282 MGSVTVVTDSQFLINGITSWIHKWKKNGWTLSDNTKVKNEEDWKSLDSEMQGID-VKFKH 340
Query: 129 VPGHGNSHGNMKADEMARDAA 149
VPGH GN AD +A + A
Sbjct: 341 VPGHRGVDGNEAADRLANEGA 361
>gi|296224561|ref|XP_002758102.1| PREDICTED: ribonuclease H1 [Callithrix jacchus]
Length = 287
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ VVV+TDG C NG+ AG GVY+G + NV ++ GR TN AEI A A++Q
Sbjct: 138 DSVVVYTDGCCCSNGRRRPRAGIGVYWGPGHLCKNVGIRLPGRQTNQRAEIHAACKAIEQ 197
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
AK+ NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q
Sbjct: 198 AKAQNISKLVVYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFV-ALERLTQGMD 256
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
++W VPGH GN +AD +AR+ A
Sbjct: 257 IQWMHVPGHSGFMGNEEADRLAREGA 282
>gi|426201378|gb|EKV51301.1| hypothetical protein AGABI2DRAFT_43209, partial [Agaricus bisporus
var. bisporus H97]
Length = 144
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 91/142 (64%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGK G+ AG GV++G N+P N+A + G TNN AE+ + L+ +
Sbjct: 1 VVYSDGACKGNGKAGSVAGVGVFYGPNDPRNLAERCPGDQTNNRAELIAIVRVLETVPVS 60
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQN---KEELQELLHQ-IGQMES 123
+ ++ IK+DS++ IKCV +W+PKWQ NG+R A+G PV+N + L LL++ +G+ +
Sbjct: 61 S-QKLLIKTDSRYSIKCVGQWLPKWQKNGFRTAEGLPVKNVGIVKYLAALLNERVGRGQP 119
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V + V GH + GN AD A
Sbjct: 120 VLLQHVKGHSGNPGNDGADAQA 141
>gi|50545063|ref|XP_500083.1| YALI0A15059p [Yarrowia lipolytica]
gi|49645948|emb|CAG84014.1| YALI0A15059p [Yarrowia lipolytica CLIB122]
Length = 225
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKS- 66
V+TDGAC RNGK A AG GVYFG NNP N + + G + TN AE+ AL+ +
Sbjct: 74 VYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQLIQEW 133
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQIGQMES 123
N + I +DS + +KCV EW KW+ NGW G PV N++ +++ LL+ +G
Sbjct: 134 VNGEYYEIYTDSDYALKCVTEWCDKWERNGWVNCKGYPVSNQDTIKDILKLLNSVGCRNV 193
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ E V H + GN ADE+ARDAA
Sbjct: 194 LGIEKVLAHSDCEGNNGADELARDAA 219
>gi|409083583|gb|EKM83940.1| hypothetical protein AGABI1DRAFT_14088, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 144
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGK G+ AG GV++G N+P N+A + G TNN AE+ + L+ +
Sbjct: 1 VVYSDGACKGNGKAGSIAGVGVFYGPNDPRNLAERCPGDQTNNRAELIAIVRVLETVPVS 60
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQN---KEELQELLHQ-IGQMES 123
+ ++ IK+DS++ IKCV +W+PKWQ NG+R A+G PV+N + L LL++ G+ +
Sbjct: 61 S-QKLLIKTDSRYSIKCVGQWLPKWQENGFRTAEGLPVKNVGIVKYLAALLNERAGRGQP 119
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V + V GH + GN AD A
Sbjct: 120 VLLQHVKGHSGNPGNDGADAQA 141
>gi|170595213|ref|XP_001902289.1| RNase H family protein [Brugia malayi]
gi|158590103|gb|EDP28857.1| RNase H family protein [Brugia malayi]
Length = 212
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKS 66
+V+TDGAC NG VGA+AG GVY+GE + N++ + G TNN AE++ I A++ A
Sbjct: 63 IVYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMAIQ 122
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIGQMES 123
++ +++DS +I+ + W+ WQ NGW+ ++G V+N++ EL LL I +
Sbjct: 123 RRYHQLIVRTDSNLLIQTMNSWIHGWQKNGWKTSNGTTVKNQDLIIELNGLLKNI----N 178
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V++E V GH +GN KAD++AR+ A
Sbjct: 179 VRFEHVAGHVGIYGNEKADQLAREGA 204
>gi|242807454|ref|XP_002484959.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
gi|218715584|gb|EED15006.1| ribonuclease H, putative [Talaromyces stipitatus ATCC 10500]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ NGK A AG GVYFG N+ NV+ + G R TN AE+ I AL
Sbjct: 236 PPGMLRIYTDGSSLGNGKKIAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRAL 295
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ A V I +DS++ I CV W KW N W+ +DGKPV+NK+ +Q +L +I +
Sbjct: 296 EIAPRHRP--VTIVTDSRYAIDCVTNWFRKWVRNNWQTSDGKPVENKDLIQSILVKISER 353
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+S+K +E+V GH GN AD +A D A
Sbjct: 354 DSLKVTTTFEWVKGHNRDAGNEAADRLAVDGA 385
>gi|440911204|gb|ELR60910.1| Ribonuclease H1, partial [Bos grunniens mutus]
Length = 253
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ +I ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ + +
Sbjct: 192 KAQDITKLVLYTDSMFTINGITTWVKGWKQNGWRTSTGKEVTNKEDFAE-LERLARGMDI 250
Query: 125 KW 126
+W
Sbjct: 251 QW 252
>gi|396464878|ref|XP_003837047.1| hypothetical protein LEMA_P032810.1 [Leptosphaeria maculans JN3]
gi|312213605|emb|CBX93607.1| hypothetical protein LEMA_P032810.1 [Leptosphaeria maculans JN3]
Length = 460
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
++V+TDG+ NG+ GA AG GVYFG +P NV+ + G R TN AE+ AL
Sbjct: 234 IIVYTDGSSLGNGRTGAVAGVGVYFGPRDPRNVSEPLRGDRQTNQRAELTAVARALDHIP 293
Query: 66 SANIDRVC-IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ---- 120
IDR I +DS + IKC+ EW KW +N WR A GKPV+N++ ++ ++ +I +
Sbjct: 294 ---IDRSAEIVTDSNYSIKCLTEWCNKWMANNWRNAAGKPVENRDLIEPIIGRIRERTLC 350
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
K+ ++ GH N GNM ADE+A
Sbjct: 351 KAETKFRWIKGHANDKGNMAADELA 375
>gi|256090534|ref|XP_002581242.1| phosphoglucomutase [Schistosoma mansoni]
Length = 826
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 125 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 183
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 184 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 243
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 244 WYHVRSHRGVHGNEEADSLANIGA 267
>gi|50552764|ref|XP_503792.1| YALI0E10725p [Yarrowia lipolytica]
gi|49649661|emb|CAG79383.1| YALI0E10725p [Yarrowia lipolytica CLIB122]
Length = 474
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQ-AKS 66
VF DGAC NG A AGYG+YFGENNP NVA V G V T+ AE+Q + A + K
Sbjct: 304 VFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQVIEKK 363
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM--ESV 124
N I SDS + I C+ +W W+ +GW+ ++GKPV+N + +Q+ + + ++ +
Sbjct: 364 DNGHSYEIMSDSSYAINCLTKWRHDWKKHGWKTSEGKPVENVDLIQDCIKIMDRLVKRGI 423
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
+ V HG+S GN +AD +AR
Sbjct: 424 ALKKVQAHGDSKGNKRADVLAR 445
>gi|256090536|ref|XP_002581243.1| phosphoglucomutase [Schistosoma mansoni]
Length = 731
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 30 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 88
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 89 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 148
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 149 WYHVRSHRGVHGNEEADSLANIGA 172
>gi|256090538|ref|XP_002581244.1| phosphoglucomutase [Schistosoma mansoni]
Length = 817
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 116 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 174
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 175 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 234
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 235 WYHVRSHRGVHGNEEADSLANIGA 258
>gi|451846607|gb|EMD59916.1| hypothetical protein COCSADRAFT_164090 [Cochliobolus sativus
ND90Pr]
Length = 448
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
+VV TDG NGKVGA AG GVYFG +P NV + G R TN AE+ AL
Sbjct: 232 LVVHTDGGSRGNGKVGARAGVGVYFGPRDPRNVGEPLRGERQTNQRAELVAIARALDHVP 291
Query: 66 SANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
IDR V I++DS + I+C++EW W++ GWR A GK V+NKE +Q +L +I + +
Sbjct: 292 ---IDRDVEIRTDSYYSIRCLREWFQNWETKGWRNAAGKSVENKELIQPILARIRERLTC 348
Query: 125 K----WEFVPGHGNSHGNMKADEMA 145
K + +V GH GN+ AD +A
Sbjct: 349 KGKTTFVWVKGHSTDIGNIAADALA 373
>gi|451994754|gb|EMD87223.1| hypothetical protein COCHEDRAFT_1197382 [Cochliobolus
heterostrophus C5]
Length = 448
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
+VV TDG NGKVGA AG GVYFG +P NV + G R TN AE+ AL
Sbjct: 232 LVVHTDGGSRGNGKVGARAGVGVYFGPRDPRNVGEPLRGERQTNQRAELVAIARALDHVP 291
Query: 66 SANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
IDR V I++DS + I+C++EW W++ GWR A GK V+NKE +Q +L +I + +
Sbjct: 292 ---IDRDVEIRTDSYYSIRCLREWFQNWETKGWRNAAGKSVENKELIQPILARIRERLTC 348
Query: 125 K----WEFVPGHGNSHGNMKADEMA 145
K + +V GH GN+ AD +A
Sbjct: 349 KGKTTFVWVKGHSTDIGNIAADALA 373
>gi|336376962|gb|EGO05297.1| hypothetical protein SERLA73DRAFT_44067 [Serpula lacrymans var.
lacrymans S7.3]
Length = 322
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+ DGAC NG+VG+ AG GV++G N+P N+ + G TNN AE+ + L+ ++
Sbjct: 118 VVYCDGACKGNGQVGSIAGVGVWWGVNDPRNIIERCPGDQTNNRAELIAIVRILETTPTS 177
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM----ES 123
V IK+DSQ+ IKC + W PKW SNG++ ++G PV+N +Q L + +
Sbjct: 178 KRTLV-IKTDSQYSIKCFELWFPKWSSNGFKTSNGTPVKNAPLIQYLASLLETRRRKGQK 236
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+ ++V GH GN AD +A
Sbjct: 237 VRLKYVRGHNGHEGNEHADRLA 258
>gi|350855036|emb|CAZ37481.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 671
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 125 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 183
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 184 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 243
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 244 WYHVRSHRGVHGNEEADSLANIGA 267
>gi|350855034|emb|CAZ37483.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 662
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 116 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 174
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 175 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 234
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 235 WYHVRSHRGVHGNEEADSLANIGA 258
>gi|212538155|ref|XP_002149233.1| ribonuclease H, putative [Talaromyces marneffei ATCC 18224]
gi|210068975|gb|EEA23066.1| ribonuclease H, putative [Talaromyces marneffei ATCC 18224]
Length = 420
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ NGK A AG GVYFG N+ NV+ + G R TN AE+ I AL
Sbjct: 237 PPGMLRIYTDGSSLGNGKKVAQAGVGVYFGPNDTRNVSEPLKGHRQTNQRAELTAIIRAL 296
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ A V I +DS++ I CV W KW N W+ +DGKPV+NK+ +Q +L +I +
Sbjct: 297 EIAPRHRP--VTIVTDSRYSIDCVTNWFRKWIRNNWQTSDGKPVENKDLIQSILVKINER 354
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+S+K +E+V GH GN +AD +A + A
Sbjct: 355 DSLKVTTTFEWVKGHNRDAGNEEADRLAVNGA 386
>gi|350855035|emb|CAZ37482.2| phosphoglucomutase, putative [Schistosoma mansoni]
Length = 576
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG+C AGYGVY+G N+P NV+ ++ G TNN AEI+ I A+KQA
Sbjct: 30 VMVYTDGSC-NGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAHI 88
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
I + I +DS+F C EW +W N W+ A+G+ + KE ++ LL I + +
Sbjct: 89 GGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEII 148
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W V H HGN +AD +A A
Sbjct: 149 WYHVRSHRGVHGNEEADSLANIGA 172
>gi|268573648|ref|XP_002641801.1| C. briggsae CBR-RNH-1.0 protein [Caenorhabditis briggsae]
Length = 266
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC +NGK A AG+GVY+GE++ N G V G TNN E+ AL++A
Sbjct: 119 VVYTDGACSKNGKAKARAGWGVYWGEDSEDNAFGPVYGTATNNRGELIAVEKALEKAIEK 178
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ ++ +K+DS +++ + W+ W+ GW+ A G V NK+ L + + + Q VK+
Sbjct: 179 GLTKLVVKTDSNLLVQSINIWIHGWKRKGWKTATGSDVLNKDVLVK-IDNLRQKLKVKFM 237
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
V GH GN KAD++AR A
Sbjct: 238 HVRGHAGVDGNEKADKLARKGA 259
>gi|225711046|gb|ACO11369.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 394
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 3/152 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
M+ D V VFTDGAC NG+ GAS G G++F +N+ N + + R TNN AE+
Sbjct: 239 MNKDGWVKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 298
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGW-RKADGKPVQNKEELQELLHQI 118
A++ KS + ++ I +DSQF I ++ MP W+ W R + G+ V+NK E +L I
Sbjct: 299 AIQIVKSDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFL-VLDDI 357
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ ++K+ +VPGH N +GN AD++AR +G
Sbjct: 358 MKNMTIKFIYVPGHRNIYGNNCADKLARRGSG 389
>gi|321472557|gb|EFX83527.1| hypothetical protein DAPPUDRAFT_301828 [Daphnia pulex]
Length = 156
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGA 57
D ++VV + DGACP NG A G GV+FG+++PLNV+ + TN AEI+
Sbjct: 8 FDSHDNVVTYIDGACPFNGYPHAKGGIGVWFGDDHPLNVSEPLDREGFPPTNQVAEIKAC 67
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I A + K + RV +DSQ++I + W+ KW +NGW K+DG P+++K QELL
Sbjct: 68 IRACQILKDFGVRRVSFYTDSQYLIDSMTNWIYKWLNNGWLKSDGTPLKHKHYYQELLDL 127
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
I + V W +P N KAD +A+ A
Sbjct: 128 IDNFK-VNWVHIPSAEN-----KADRLAKKGA 153
>gi|345562356|gb|EGX45424.1| hypothetical protein AOL_s00169g30 [Arthrobotrys oligospora ATCC
24927]
Length = 396
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 8/147 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG A AG G++FG + NV+ + R TNN AE+ + A++ A
Sbjct: 246 IYTDGSSLMNGSASARAGVGIWFGPGDKRNVSEPLNDSRATNNRAELSAILRAIEIAPKH 305
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES---- 123
+ I +DS++ I+CV EW KW+SNGW+ A GKPV+N++ ++E+L+ I + +
Sbjct: 306 R--EILIFTDSKYAIQCVTEWFQKWRSNGWQTAAGKPVENQDIIEEILNLIEERITQGGA 363
Query: 124 -VKWEFVPGHGNSHGNMKADEMARDAA 149
K+E+V GH GN AD++ARD A
Sbjct: 364 KTKFEWVNGHKGVVGNEMADKLARDGA 390
>gi|358397043|gb|EHK46418.1| hypothetical protein TRIATDRAFT_256410 [Trichoderma atroviride IMI
206040]
Length = 331
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 7/142 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG+ GA AG GVYFGEN+P N+A K+ G + TN AE+ + AL+ +A
Sbjct: 185 IYTDGSSLANGRKGARAGLGVYFGENDPRNLAEKLLGDKQTNQRAELMAMLRALESVPAA 244
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----S 123
R I SDSQ+ IKCV EW W GW+ A G+ V+N E ++ +L ++ + +
Sbjct: 245 QTVR--IYSDSQYSIKCVTEWPIGWNKKGWKTASGEDVKNHEIIRPILKKMDERTKAGGN 302
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+++V GH + GN+ AD +A
Sbjct: 303 TYFQWVKGHAANPGNIAADRLA 324
>gi|343428929|emb|CBQ72474.1| related to Ribonuclease H [Sporisorium reilianum SRZ2]
Length = 170
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENN--PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++ V+ DG+C NGK A AGY YF + NVA ++ G TNN AE+ I A++Q
Sbjct: 18 YIFVYCDGSCLGNGKPWARAGYAAYFPDPRLRDRNVAARLQGLQTNNRAELMALIRAVQQ 77
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A S + +V I SDS++ I CV +W+ KW+SNGW+ A GKPV N++ + L + +
Sbjct: 78 A-SKDGRQVVIFSDSEYAINCVGKWLGKWRSNGWKTAKGKPVANRDLVVRLDRALDDHDI 136
Query: 124 VK-WEFVPGHGNSHGNMKADEMARDA 148
E V GH +GN AD+MA++A
Sbjct: 137 PPILEHVKGHAGHYGNEVADQMAKEA 162
>gi|334330218|ref|XP_001381443.2| PREDICTED: ribonuclease H1-like [Monodelphis domestica]
Length = 259
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C GK AG GVY+G +PLNV ++TGR TN AEI A AL+QAK
Sbjct: 114 VVYTDGCCSSKGK-KPRAGIGVYWGPGHPLNVGDRLTGRQTNQRAEIHAACKALEQAKDQ 172
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
NI+++ + + S + + + W+ NGW+ + GK V NK++ + L ++ + ++W
Sbjct: 173 NINKLVLYTYSMCTVNGITNRIKDWKKNGWKTSAGKKVSNKDDFVK-LDRLTRGIDIQWI 231
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
VP H GN +AD++AR+ A
Sbjct: 232 HVPCHSALEGNEEADKLAREGA 253
>gi|426334587|ref|XP_004028827.1| PREDICTED: ribonuclease H1, partial [Gorilla gorilla gorilla]
Length = 211
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 56 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 115
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 116 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 174
Query: 125 KWE 127
+W+
Sbjct: 175 QWD 177
>gi|409076972|gb|EKM77340.1| hypothetical protein AGABI1DRAFT_108182 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 208
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 9/154 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT--GRVTNNNAEIQGAIHALKQ 63
H+ VF DGAC NG +GA AG GVYFG + N++ ++ G T+ AEI AI AL +
Sbjct: 45 HIAVFVDGACRGNGYLGARAGMGVYFGPRSRHNISRRLDDDGPQTSQRAEINAAILALDR 104
Query: 64 AKSA------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
KS D V I SDS++++ + +W+ KW NGW A G V N+E+ +EL
Sbjct: 105 VKSLLDQDRLETDLVVIASDSEYLVTGISKWIYKWYDNGWTNAKGGDVSNREDFEELDEL 164
Query: 118 IGQMESVKWEFVPG-HGNSHGNMKADEMARDAAG 150
+ ++E FV + N +ADE+A+DA
Sbjct: 165 VDELEDDYGVFVKFWKVDREDNEEADELAKDAVA 198
>gi|353238691|emb|CCA70629.1| related to ribonuclease H1 [Piriformospora indica DSM 11827]
Length = 448
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V+TDGAC +NGKV A AG GV++G ++ N++ + G TNN AE+ I AL+ A S
Sbjct: 200 IIVYTDGACKQNGKVDAVAGIGVWWGPHDERNLSERCPGDQTNNRAELIAIIRALETAPS 259
Query: 67 ANI-----------DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
R I++DS++ I+ EW PKW+ N WR A G+ +N +Q L+
Sbjct: 260 EEALSPVAASKKRKTRWIIRTDSRYSIQVATEWAPKWERNNWRLASGQEAKNVPLIQYLM 319
Query: 116 HQI---GQMESVKWEFVPGHGNSHGNMKADEMA 145
+ G E VK+E+V GH GN AD +A
Sbjct: 320 ALLDLRGMDEPVKFEWVRGHQGDVGNEAADRLA 352
>gi|426195315|gb|EKV45245.1| hypothetical protein AGABI2DRAFT_144709 [Agaricus bisporus var.
bisporus H97]
Length = 208
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 9/154 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT--GRVTNNNAEIQGAIHALKQ 63
H+ VF DGAC NG +GA AG GVYFG + N++ ++ G T+ AEI AI AL +
Sbjct: 45 HIAVFVDGACRGNGYLGARAGMGVYFGPRSRHNISQRLDDDGPQTSQRAEINAAILALDR 104
Query: 64 AKSA------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
KS D V I SDS++++ + +W+ KW NGW A G V N+E+ +EL
Sbjct: 105 VKSLLDQDRLETDLVVIASDSEYLVTGISKWIYKWYDNGWTNAKGGDVSNREDFEELDEL 164
Query: 118 IGQMESVKWEFVPG-HGNSHGNMKADEMARDAAG 150
+ ++E FV + N +ADE+A+DA
Sbjct: 165 VDELEDDYGVFVKFWKVDREDNEEADELAKDAVA 198
>gi|19112918|ref|NP_596126.1| ribonuclease H Rnh1 (predicted) [Schizosaccharomyces pombe 972h-]
gi|41017812|sp|Q9UST8.1|RNH1_SCHPO RecName: Full=Ribonuclease H; Short=RNase H
gi|6048295|emb|CAB58158.1| ribonuclease H Rnh1 (predicted) [Schizosaccharomyces pombe]
Length = 264
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTSG 184
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
+ I+SDS + IK + W+PKW+ N ++ ++ +PV+N +L+++ + S
Sbjct: 185 D----LTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKN----LDLINRASDLMSDRN 236
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V E+V GH +GN +AD +AR A
Sbjct: 237 VSLEYVKGHSTDYGNQQADMLARRGA 262
>gi|221113571|ref|XP_002164284.1| PREDICTED: ribonuclease H1-like [Hydra magnipapillata]
Length = 255
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAKS 66
VV++DG C NG A G GVY+G +P NV+ + + TN AE+ A AL+ A
Sbjct: 110 VVYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIE 169
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
N+ V +++DS + IK + EW+ W+SNGW+ + G V NKEE+ L ++ SV W
Sbjct: 170 MNLPEVELRTDSMYTIKAMTEWIQNWESNGWKNSSGGNVVNKEEMLRLSELCAKI-SVTW 228
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH +GN +AD++A A
Sbjct: 229 VHIPGHKGVYGNEQADQLANQGA 251
>gi|392597844|gb|EIW87166.1| ribonuclease H-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 392
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+ DGAC NG+ G+ AG GV++G ++P N++ + G TNN AE+ + L + SA
Sbjct: 117 VVYCDGACRGNGQPGSVAGLGVWWGHDDPRNISERCPGDQTNNRAELCAIVRVL-ETTSA 175
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE----LLHQIGQMES 123
+ + IK+DS + I+C Q W+PKW++NG+R + G PV+N+ ++ L + +
Sbjct: 176 SKGTLIIKTDSSYSIQCFQSWIPKWRANGFRASTGGPVKNQPLIKYLDALLTYHANSGHT 235
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+K + V GH GN AD +A
Sbjct: 236 IKLKHVKGHAGIPGNEGADRLA 257
>gi|254565827|ref|XP_002490024.1| Ribonuclease H1 [Komagataella pastoris GS115]
gi|238029820|emb|CAY67743.1| Ribonuclease H1 [Komagataella pastoris GS115]
gi|328350430|emb|CCA36830.1| ribonuclease HI [Komagataella pastoris CBS 7435]
Length = 274
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 14/158 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL--- 61
NH +++TDGA NGK GA GYGV+F EN+ N++ +TG TN AE+ AL
Sbjct: 115 NHEIIYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDALIII 174
Query: 62 -KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
K S + I++DS++ I + +W+ KW+ N WR A G PVQN++ ++ + I
Sbjct: 175 EKDLASGSKKHYTIRTDSRYTINSITKWVTKWKQNDWRTATG-PVQNRDLIEPCTNLIES 233
Query: 121 MES---------VKWEFVPGHGNSHGNMKADEMARDAA 149
+ S + E+V GH +GN AD++A A
Sbjct: 234 VNSKYKELGMPPLNIEYVKGHSGDYGNEMADKLATAGA 271
>gi|452986031|gb|EME85787.1| hypothetical protein MYCFIDRAFT_118885, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 351
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 15/155 (9%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ + ++TDG+ NG A G GVYFG + N++ + G + TN AE+ + AL+
Sbjct: 194 DSAIRIYTDGSSLANGSKNAWGGVGVYFGPADQRNISEPLQGTKQTNQRAELTAIVRALE 253
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A R+ I SDS++ I CV EW P WQ NGW + KPV+NK+ +Q++L +G+
Sbjct: 254 VAPKDR--RIVIVSDSKYAIDCVTEWFPNWQRNGWVNSSRKPVENKDLIQKILDMLGERL 311
Query: 123 S------------VKWEFVPGHGNSHGNMKADEMA 145
V++E+V GH GN ADE+A
Sbjct: 312 RLNASYWDHGPGGVRFEWVKGHAKDEGNNAADELA 346
>gi|171683197|ref|XP_001906541.1| hypothetical protein [Podospora anserina S mat+]
gi|170941558|emb|CAP67210.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
DP+ +VV+TDGA P NGK A+AG GVYFG +P N++ ++ G + TN AE+ + A
Sbjct: 170 DPNELIVVYTDGAAPGNGKRHAAAGIGVYFGAGDPRNISKRLPGPLQTNQRAELMAILLA 229
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ A + V I++DSQ+ I CV +W W NGW A G V+N + ++ + I +
Sbjct: 230 LQAFDPA--ESVEIRTDSQYSIDCVTKWYRGWVRNGWLSAKGAAVKNDDIIKPIRALIDE 287
Query: 121 MESV----KWEFVPGHGNSHGNMKADEMA 145
++V K+ V GH GN AD +A
Sbjct: 288 RDAVGARTKFTKVAGHSGDPGNDAADRLA 316
>gi|50543288|ref|XP_499810.1| YALI0A06523p [Yarrowia lipolytica]
gi|49645675|emb|CAG83736.1| YALI0A06523p [Yarrowia lipolytica CLIB122]
Length = 369
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHA--LKQAK 65
+FTDGAC RNG+ A AG+G+Y GEN+ N++G+V G TN AE+ +HA + +K
Sbjct: 209 IFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICASK 268
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ-MESV 124
++ I +DS + I C+ +W W+ NGWR G+PV N++ ++ +L + +
Sbjct: 269 LSDGRLYEIYTDSSYAIDCLTKWHIAWERNGWRNRGGEPVANQDVIKRILTLKAESTNCI 328
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
+ V HG+S GN +AD +AR
Sbjct: 329 GLKKVEAHGSSEGNKQADRLAR 350
>gi|395507270|ref|XP_003757950.1| PREDICTED: ribonuclease H1-like [Sarcophilus harrisii]
Length = 177
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
DP+ V+ GAC NG+ GA G G +G N+ N + +GR TN +A ++ A +
Sbjct: 31 DPE---TVYIKGACKNNGREGAQGGIGTCWGPNHKFNTSSTFSGRQTNQSASLEAATKGI 87
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+QAK+ N D++ + +D+Q + + + EW+ KW++N W+ + K V +KE+ +L M
Sbjct: 88 EQAKAQNKDKITVCTDNQLITQGMNEWIDKWKANDWKTSKNKDVVHKEQFAKLDSMTRDM 147
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
+V+W++VP GN +A +A+DA
Sbjct: 148 -NVEWKYVPAGSKVEGNTEARRLAKDAT 174
>gi|170042793|ref|XP_001849097.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167866254|gb|EDS29637.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 186
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D V V+TDG+ NG A AG VYFGE + LN V+GR TNN E A A+
Sbjct: 16 DEDGFVYVYTDGSWEGNGTAAACAGLVVYFGEGHALNA---VSGRATNNCGEFLAAALAI 72
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK---EELQELLHQI 118
+ K I R+ + +DS+F++ + +W+P W+ N W+ + GKPV+N+ EEL L ++
Sbjct: 73 RLTKQQGIKRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQEL 132
Query: 119 GQME-SVKWEFVPGHGNSHGNMKAD 142
+ +KW H GN +AD
Sbjct: 133 AEKSIKIKWNHADAHCVILGNERAD 157
>gi|116200977|ref|XP_001226300.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
gi|88176891|gb|EAQ84359.1| hypothetical protein CHGG_08373 [Chaetomium globosum CBS 148.51]
Length = 312
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 93/145 (64%), Gaps = 10/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
V+V+TDG+ NG+VGA+AG GVYFG N+P NV+ ++ G TN AE+ + AL +
Sbjct: 166 VIVYTDGSSLGNGRVGATAGVGVYFGANDPRNVSERLEGETQTNQRAELTAILRAL---E 222
Query: 66 SANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES- 123
++++ + I++DS++ I+CV EW W+ NGW+ G PV+N++ +Q + ++ + E+
Sbjct: 223 IIDLEQDLEIRTDSKYSIQCVTEWYINWERNGWKTRSG-PVKNQDLVQLVRDKLEEREAK 281
Query: 124 ---VKWEFVPGHGNSHGNMKADEMA 145
++ +V GH GN+ AD++A
Sbjct: 282 GGRTQFIWVKGHDTDQGNIAADQLA 306
>gi|2911504|gb|AAC04366.1| ribonuclease H1 [Schizosaccharomyces pombe]
Length = 264
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
VV+ +G+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYAEGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTSG 184
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
+ I+SDS + IK + W+PKW+ N ++ ++ +PV+N +L+++ + S
Sbjct: 185 D----LTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKN----LDLINRASDLMSDRN 236
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V E+V GH +GN +AD +AR A
Sbjct: 237 VSLEYVKGHSTDYGNQQADMLARRGA 262
>gi|196010473|ref|XP_002115101.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
gi|190582484|gb|EDV22557.1| hypothetical protein TRIADDRAFT_28584 [Trichoplax adhaerens]
Length = 173
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
+V+ DG C NG A AG G+Y+ N +V+ +++G+ TN AE+ A AL+ A
Sbjct: 29 IVYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDH 88
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
N++ + I++DS + I V W+ KW+ N W+ + G V+NKE++ +L H Q+ VKW
Sbjct: 89 NLETIEIRTDSMYTINVVTNWINKWKRNEWKTSSGDEVKNKEDIVKLDHLNSQLR-VKWT 147
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
+ H GN AD++A+ A
Sbjct: 148 HIRSHAGDVGNEMADKLAKAGA 169
>gi|340939599|gb|EGS20221.1| ribonuclease H-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 335
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 8/148 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+VV+TDG+ NG+ GASAG GVYFG ++P N++ ++ G V TN AE+ + AL+
Sbjct: 188 LVVYTDGSSLGNGRNGASAGVGVYFGPSDPRNISERLEGEVQTNQRAELTAILRALQSID 247
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME--- 122
+ V I+SDS++ IKCV EW W+ NGW+ +G+ V NK+ +Q + ++ + E
Sbjct: 248 --DTQDVEIRSDSKYAIKCVTEWYINWERNGWKTRNGQ-VMNKDLVQAIRGKLEERERKG 304
Query: 123 -SVKWEFVPGHGNSHGNMKADEMARDAA 149
++ +V GH GN+ AD +A + A
Sbjct: 305 GRAQFIWVKGHSTDPGNIAADTLAVEGA 332
>gi|115532542|ref|NP_001040786.1| Protein RNH-1.0, isoform c [Caenorhabditis elegans]
gi|351062499|emb|CCD70468.1| Protein RNH-1.0, isoform c [Caenorhabditis elegans]
Length = 251
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 1 MDPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+DP+ N VV+TDGAC NG A AG+GVY+G+++ N G V G TNN E+
Sbjct: 95 IDPEFANAPVVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQ 154
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
A+++A + +V IK+DS +++ + W+ W+ GW+ + G V N++ L + + +
Sbjct: 155 KAIEKAIEKRLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMK-IDNL 213
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q VK+ V GH GN KADE+AR A
Sbjct: 214 RQKLKVKFLHVRGHAGIDGNEKADELARKGA 244
>gi|310796781|gb|EFQ32242.1| hypothetical protein GLRG_07386 [Glomerella graminicola M1.001]
Length = 355
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
++ V+TDG+ NG G+ AG GVYFG N+P NV+ ++ G++ TN AE+ + AL+
Sbjct: 194 EDTAKVYTDGSSLGNGTPGSVAGVGVYFGPNDPRNVSERLEGKLQTNQRAELTAILRALQ 253
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
S + I SDS++ IKCV++W WQ GW+ + V+NK+ +Q + +I + +
Sbjct: 254 L--SPLTQSLMILSDSKYSIKCVRDWYKDWQRLGWKTSTNSEVKNKDLIQAVREEIAKRD 311
Query: 123 ----SVKWEFVPGHGNSHGNMKADEMA 145
+ +++V GH N GN+ AD++A
Sbjct: 312 AAGATTDFDWVKGHNNDPGNVAADKLA 338
>gi|429851426|gb|ELA26616.1| RNase h domain protein [Colletotrichum gloeosporioides Nara gc5]
Length = 384
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 90/147 (61%), Gaps = 8/147 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSA 67
++TDG+C NG A+ G GV+FGEN+P NV+ ++ G+ TN AE+ G + AL+ K+
Sbjct: 167 IYTDGSCLGNGTDNATGGVGVFFGENDPRNVSERLEGKKQTNQRAELTGVLRALE--KTP 224
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKA-DGKPVQNKEELQELLHQIGQMES--- 123
I +DS++ I CVQ+W P WQ GW+ + V NK+ +Q ++++I + E+
Sbjct: 225 ATQGAQILTDSRYSINCVQKWAPIWQGKGWKTSVLNNDVTNKDLVQAIMNKIAEREAKGT 284
Query: 124 -VKWEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH + GN++AD++AR A
Sbjct: 285 RTVFTWVKGHSVTDGNVQADKLARGVA 311
>gi|169764014|ref|XP_001727907.1| RNase H domain protein [Aspergillus oryzae RIB40]
gi|83770935|dbj|BAE61068.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871201|gb|EIT80366.1| ribonuclease H [Aspergillus oryzae 3.042]
Length = 407
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NG+ ASAG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 232 PPGMLRIYTDGSSLKNGRALASAGVGVYFGPGDNRNVSEPLKGSRQTNQRAELTAILRAL 291
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A V I +DSQ+ IKCV W KWQ N W +D KPV+NK+ ++ + +I +
Sbjct: 292 DIAPRHR--DVTIFTDSQYAIKCVTVWYVKWQRNKWLTSDNKPVENKDLVESIRVKIEER 349
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+ +K +E+V GH + GN AD +A + A
Sbjct: 350 DELKVKTLFEWVKGHNSDPGNEAADRLAVNGA 381
>gi|449547075|gb|EMD38043.1| hypothetical protein CERSUDRAFT_82283 [Ceriporiopsis subvermispora
B]
Length = 658
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
MD ++V+TDGAC NG+ G+ AG GV++G N+ N++ + G TNN AE+ + A
Sbjct: 75 MDAKGRLIVYTDGACGGNGQRGSKAGIGVWWGRNDTRNLSERCPGDQTNNRAELIAIVRA 134
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ--ELLHQI 118
L+ A + IK+DSQ+ IKC+ EW+ W+ W+ + G+PV+N ++ L ++
Sbjct: 135 LETAPEKPL---LIKTDSQYSIKCLTEWLQGWERKNWKNSKGEPVKNAPLIRYASALRKV 191
Query: 119 GQM--ESVKWEFVPGHGNSHGNMKADEMA 145
Q V+ E+V GH GN AD +A
Sbjct: 192 RQRNGNDVEVEYVKGHAGHEGNEGADRLA 220
>gi|392562672|gb|EIW55852.1| ribonuclease H-like protein [Trametes versicolor FP-101664 SS1]
Length = 419
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 10/145 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
+V+TDG+C NGK GA AG G+++G+++P N + G TNN AE+ I L+ A
Sbjct: 120 IVYTDGSCQGNGKPGAVAGIGIWWGKDDPRNTCERCPGDQTNNRAELIAIIRVLETA-PI 178
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ---ELLHQIGQMESV 124
+ + IK+DS + I C+ +W+P W+ NGWR++ GKP+ N ++ LL + + ES
Sbjct: 179 DTHALVIKTDSSYSINCLSDWLPMWKRNGWRRSTGKPILNVPLIKYADALLQE--RRESA 236
Query: 125 KWEF----VPGHGNSHGNMKADEMA 145
K V GH GN AD +A
Sbjct: 237 KQPVDLVKVLGHSGEEGNEGADRLA 261
>gi|403418424|emb|CCM05124.1| predicted protein [Fibroporia radiculosa]
Length = 490
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D +V++DGAC NGK G+ AG GV++G ++P N+A + G TNN AE+ I L
Sbjct: 108 DETGWAIVYSDGACKGNGKAGSIAGVGVWWGRDDPRNLAERCPGMQTNNRAELIAIIRVL 167
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK---EELQELLHQI 118
+ A + + IK+DSQ+ I C++ W+PKW + G+R + G V+N+ L LL Q
Sbjct: 168 ETAPR-DKQPLLIKTDSQYCINCIRSWLPKWLATGFRSSSGGVVKNELLIRYLSTLLDQR 226
Query: 119 GQM-ESVKWEFVPGHGNSHGNMKADEMARDAA 149
G + V ++V GH GN AD +A A
Sbjct: 227 GLAGQKVSLQYVRGHSGEEGNEGADYLANVGA 258
>gi|390597543|gb|EIN06942.1| ribonuclease H-like protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 577
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+ DGAC NG G+ AG GV++G +P N+A + G TN AE+ I L++
Sbjct: 353 VVYCDGACTGNGNPGSVAGIGVWWGPEDPRNLAERCPGAQTNIRAELIAIIRILEETP-F 411
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM----ES 123
N + IK+DS++ I CV +WMPKW+SNGW + PV+NK ++ L + +
Sbjct: 412 NTAPLLIKTDSEYSINCVNDWMPKWESNGWISSIESPVKNKPVIRYLSALLRARRDAGQQ 471
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+ + V GH N GN AD+ A
Sbjct: 472 VELQCVQGHANIEGNEAADKQA 493
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VVF DGAC NG+ G+ AG GV++G +P N+A + G TNN AE+ L+ +
Sbjct: 92 VVFCDGACKGNGQKGSYAGIGVWWGHQDPRNIAERCPGNQTNNRAELIAIARVLENTPIS 151
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI------GQM 121
+ IKSDS + C+ +W+P WQ NGW+ + G+ V+N+ ++ +L + GQ
Sbjct: 152 K-KPLLIKSDSAYSRDCLHKWLPGWQRNGWKNSKGESVRNQAVIRYILALLAVRGKAGQK 210
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
++W V GH GN AD A
Sbjct: 211 VQIQW--VKGHAGIAGNEGADAEA 232
>gi|342882723|gb|EGU83323.1| hypothetical protein FOXB_06174 [Fusarium oxysporum Fo5176]
Length = 343
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 7/150 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQ 63
N + ++TDG+ NG+ G+ AG GVYFG N+ N+A ++ G TN AE+ + AL+
Sbjct: 190 NLLKIWTDGSSLANGQAGSRAGLGVYFGPNDKRNLAERLPGEPQTNQRAELMAILRALEI 249
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A S V I SDSQ+ IKCV +W W+ NGW+ A G V+N++ ++ +L +I + ++
Sbjct: 250 APS--TQDVQIVSDSQYSIKCVTQWGLGWEKNGWKNAAGGEVKNQDLVRGVLARIKERDA 307
Query: 124 VK----WEFVPGHGNSHGNMKADEMARDAA 149
+ +++V GH + +GN +AD++A + A
Sbjct: 308 ARSKTSFQWVKGHASDYGNHRADDLANEGA 337
>gi|67538036|ref|XP_662792.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
gi|40743179|gb|EAA62369.1| hypothetical protein AN5188.2 [Aspergillus nidulans FGSC A4]
Length = 411
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG ++ NV+ + G R TN AE+ + A
Sbjct: 224 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 283
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DSQ+ I CV W KW+SN W AD KPV+NK+ ++ +L +I +
Sbjct: 284 LDIAPRHR--DVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDE 341
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
++ +E+V GH GN AD +A + A
Sbjct: 342 RTELRVKTLFEWVKGHDADPGNEAADRLAVNGA 374
>gi|367041475|ref|XP_003651118.1| hypothetical protein THITE_2111128 [Thielavia terrestris NRRL 8126]
gi|346998379|gb|AEO64782.1| hypothetical protein THITE_2111128 [Thielavia terrestris NRRL 8126]
Length = 327
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 8/148 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
VVV+TDG+ NG+ GA+AG GVYFGE++P N++ ++ G TN AE+ + AL+
Sbjct: 181 VVVYTDGSSLGNGRNGATAGVGVYFGESDPRNISERLQGEPQTNQRAELTAILRALETVD 240
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
+ + I++DS++ I+CV EW W+ NGW+ + G PV+N++ +Q + ++ ES
Sbjct: 241 LSQ--DMEIRTDSKYSIQCVTEWYINWEKNGWKTSTG-PVKNQDLVQLIRDRLDARESKG 297
Query: 124 --VKWEFVPGHGNSHGNMKADEMARDAA 149
++ +V GH GN+ AD +A + A
Sbjct: 298 GRTQFIWVKGHDTDVGNIAADRLAVEGA 325
>gi|238489999|ref|XP_002376237.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
gi|220698625|gb|EED54965.1| ribonuclease H, putative [Aspergillus flavus NRRL3357]
Length = 408
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NG+ ASAG GVYFG +N NV+ + G R TN AE+ + A
Sbjct: 232 PPGMLRIYTDGSSLKNGRALASAGVGVYFGPGDNSRNVSEPLKGSRQTNQRAELTAILRA 291
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DSQ+ IKCV W KWQ N W +D KPV+NK+ ++ + +I +
Sbjct: 292 LDIAPRHR--DVTIFTDSQYAIKCVTVWYVKWQRNKWLTSDNKPVENKDLVESIRVKIEE 349
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+ +K +E+V GH + GN AD +A + A
Sbjct: 350 RDELKVKTLFEWVKGHNSDPGNEAADRLAVNGA 382
>gi|393212910|gb|EJC98408.1| hypothetical protein FOMMEDRAFT_23654 [Fomitiporia mediterranea
MF3/22]
Length = 291
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ + VV+ DGAC NG+VG+ AG GV++G N+P N+A + G TNN AE+ + L+Q
Sbjct: 101 EGYDVVYADGACKGNGQVGSVAGVGVWWGHNDPRNIAERCPGAQTNNRAELIAIVRVLEQ 160
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQN----KEELQELLHQIG 119
+ + IK+DS + IKC++EW W NGW+ GKPV N + L L +
Sbjct: 161 TPPSG-RPLMIKTDSTYSIKCLREWHQSWDLNGWKTKSGKPVLNAGIIRYLLSLLSLRHF 219
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
Q VK+ +V GH GN AD A
Sbjct: 220 QGSKVKFVYVKGHAGIEGNEGADRQA 245
>gi|145238804|ref|XP_001392049.1| RNase H domain protein [Aspergillus niger CBS 513.88]
gi|134076548|emb|CAK39740.1| unnamed protein product [Aspergillus niger]
Length = 410
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NGK ASAG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 232 PPGMLRIYTDGSSLKNGKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAL 291
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A V I +DSQ+ I CV W KW+ N W A KPV NK+ ++ +L +I +
Sbjct: 292 DIAPRHR--DVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEER 349
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+K +E+V GH + GN AD +A A
Sbjct: 350 NELKVKTLFEWVKGHSSHPGNEAADRLAVSGA 381
>gi|259484645|tpe|CBF81045.1| TPA: ribonuclease H, putative (AFU_orthologue; AFUA_1G07180)
[Aspergillus nidulans FGSC A4]
Length = 463
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 276 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 335
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DSQ+ I CV W KW+SN W AD KPV+NK+ ++ +L +I +
Sbjct: 336 LDIAPRHR--DVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDE 393
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
++ +E+V GH GN AD +A + A
Sbjct: 394 RTELRVKTLFEWVKGHDADPGNEAADRLAVNGA 426
>gi|393224565|gb|EJD32906.1| ribonuclease H-like protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 186
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Query: 1 MDPDNHV--VVFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M+ + H+ V+++DGAC NGK GA+ AG GV+ ++ ++ + G TNN AE+
Sbjct: 34 MEDEEHLWDVLYSDGACSNNGKGGAAVAGIGVWSADDQGRRLSERCGGEQTNNRAELIAI 93
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--L 115
I AL+ ++ +K+DS++ I CV W+ KW+ NGW+ A G+PV+N++ ++ L L
Sbjct: 94 IRALESTPLGG-KQLLVKTDSEYAINCVYRWIRKWRVNGWKTAAGQPVKNQQLIRYLSAL 152
Query: 116 HQIGQME-SVKWEFVPGHGNSHGNMKADEMAR 146
Q+ M V+ + V GH GN+ AD +AR
Sbjct: 153 LQLRDMRGQVRLQHVRGHSGDRGNVAADALAR 184
>gi|341892277|gb|EGT48212.1| hypothetical protein CAEBREN_06927 [Caenorhabditis brenneri]
Length = 161
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK GA GYGV + + +G T G TNN E++ A + A+
Sbjct: 7 IYTDGSAVNNGKPGARGGYGVVCESDRSRDTSGSFTHGNQTNNRYELEAIKKATEIARDV 66
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES---- 123
N + IKSDS++ +K + W W+ NGWR + G+PVQN++ +Q + + + +
Sbjct: 67 NHRDINIKSDSEYAVKSLNTWSKNWEQNGWRTSSGQPVQNQDLIQSINRNVSDLRASGKN 126
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V +E V GH + N +AD +AR AA
Sbjct: 127 VGFEHVRGHQTDYHNNEADRLARTAA 152
>gi|226290451|gb|EEH45935.1| ribonuclease H1 [Paracoccidioides brasiliensis Pb18]
Length = 419
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG++GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 243 IYTDGSSLRNGRMGAKAGVGVYFGPGDKRNVSEPLKGSRQTNQRAELTAIIRALDIAPRH 302
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK-- 125
V I +DS++ I CV W WQ N W ++ KPV+NK+ +Q +L +I + +
Sbjct: 303 R--DVTIFTDSKYAINCVTVWFVNWQRNKWMTSEDKPVENKDLIQSILEKIQERAVLNVK 360
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN AD +A + A
Sbjct: 361 TLFEWVRGHNRDPGNEAADRLAVNGA 386
>gi|367030821|ref|XP_003664694.1| hypothetical protein MYCTH_2307792 [Myceliophthora thermophila ATCC
42464]
gi|347011964|gb|AEO59449.1| hypothetical protein MYCTH_2307792 [Myceliophthora thermophila ATCC
42464]
Length = 327
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
VV++TDG+ NG++GA+AG GVYFG +P N++ ++ G TN AE+ + AL+
Sbjct: 181 VVIYTDGSSLGNGRLGATAGVGVYFGPGDPRNISERLKGETQTNQRAELTAILRALETVD 240
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
V I++DS++ I+CV EW W+ NGW G PV+N++ +Q + ++ + E+
Sbjct: 241 LTQ--DVEIRTDSKYAIQCVTEWYLNWERNGWMTRAG-PVKNQDLVQLVRDKLDEREANG 297
Query: 124 --VKWEFVPGHGNSHGNMKADEMARDAA 149
++ +V GH GN+ AD +A + A
Sbjct: 298 GRTQFIWVKGHDTDQGNIAADRLAVEGA 325
>gi|76156706|gb|AAX27858.2| SJCHGC09332 protein [Schistosoma japonicum]
Length = 230
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 23 ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMI 82
A AGYGVY+G ++P NV+ ++ G TNN AEI+ I A+KQA ++ I + I +DS+F
Sbjct: 96 AMAGYGVYWGPSHPWNVSERLEGEQTNNRAEIEAVICAIKQAHASGITHLGIVTDSKFTQ 155
Query: 83 KCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVKWEFVPGHGNSHGNMKA 141
C EW +W N W+ A+G+ + KE ++ LL I + + W V GH HGN +A
Sbjct: 156 NCATEWGKRWARNSWKLANGEDAKLKEPVKRLLELIAESGIEITWHHVRGHKGVHGNEEA 215
Query: 142 DEMARDAA 149
D +A A
Sbjct: 216 DCLANIGA 223
>gi|225555483|gb|EEH03775.1| RNase H domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 432
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAPRH 304
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ--MESVK 125
V I +DS++ I CV W WQ N W A KPV+NK+ +Q +L +I + + +VK
Sbjct: 305 R--DVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN AD +A + A
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGA 388
>gi|325094793|gb|EGC48103.1| RNase H domain-containing protein [Ajellomyces capsulatus H88]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAPRH 304
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ--MESVK 125
V I +DS++ I CV W WQ N W A KPV+NK+ +Q +L +I + + +VK
Sbjct: 305 R--DVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH + GN AD +A + A
Sbjct: 363 TLFEWVRGHSQNPGNEAADRLAVNGA 388
>gi|392558791|gb|EIW51977.1| hypothetical protein TRAVEDRAFT_156671 [Trametes versicolor
FP-101664 SS1]
Length = 342
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGK G+ AG GV++G+N+ N+A + G TNN AE+ + L+
Sbjct: 135 VVYSDGACKGNGKTGSIAGVGVWWGQNDARNIAERCPGGQTNNRAELIAIVRVLETTPHT 194
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG----QMES 123
+ IK+DS++ I C + WMPKW N +R A G+PV+N ++ L + + +
Sbjct: 195 KRP-LLIKTDSKYSISCFRHWMPKWLKNNFRTASGEPVKNAPLIRYLSALLDLRAREGQK 253
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+ +++ GH GN AD+ A
Sbjct: 254 IHLQYIKGHAGHEGNEGADQQA 275
>gi|154287076|ref|XP_001544333.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407974|gb|EDN03515.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 432
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 245 IYTDGSSLRNGSMGAKAGVGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAPRH 304
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ--MESVK 125
V I +DS++ I CV W WQ N W A KPV+NK+ +Q +L +I + + +VK
Sbjct: 305 R--DVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILLKIEERTLLNVK 362
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN AD +A + A
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGA 388
>gi|320582980|gb|EFW97197.1| Ribonuclease H1 [Ogataea parapolymorpha DL-1]
Length = 176
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 21/160 (13%)
Query: 8 VVFTDGACPRNGKVG-ASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK--- 62
++TDGAC N A AGYGV+FG+ +P N A + G V TNN AE+ AL+
Sbjct: 15 TIYTDGACSFNHDPSRAKAGYGVFFGDGDPRNTAAPLAGPVQTNNRAELSAIKQALETIL 74
Query: 63 -QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL------ 115
+ + N ++ I +DS++ +KC+ W WQ NGW+ + +PV N++ ++ +L
Sbjct: 75 EEFEFGNGEQYQILTDSEYCVKCILVWSKTWQKNGWKNSKKQPVANRDLIEAILGLIDRI 134
Query: 116 ------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
H G++ +V W V GH N+HGN AD +AR+ A
Sbjct: 135 NEEYARHGFGRL-TVDW--VRGHANNHGNEMADALAREGA 171
>gi|440471788|gb|ELQ40733.1| ribonuclease H [Magnaporthe oryzae Y34]
gi|440479505|gb|ELQ60268.1| ribonuclease H [Magnaporthe oryzae P131]
Length = 341
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHAL 61
PD V+TDG+ NGK ++AG GV+FG +P N++ ++ G TN AE+ + AL
Sbjct: 183 PDGMTEVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNGPQTNQRAELTAILRAL 242
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
Q+ AN + V I SDS++ I CV +W KWQ++ W + GK V NK+ +Q + I Q
Sbjct: 243 -QSLGAN-EGVRIFSDSKYSISCVCDWYKKWQTSNWTTSAGKEVMNKDLIQPIRRLIEQR 300
Query: 122 ES--VKWEF--VPGHGNSHGNMKADEMARDAA 149
E VK EF V GH + GN++AD +A + A
Sbjct: 301 EKRGVKTEFVWVKGHAATEGNVQADLLAVEGA 332
>gi|121702361|ref|XP_001269445.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
gi|119397588|gb|EAW08019.1| RNase H domain protein [Aspergillus clavatus NRRL 1]
Length = 402
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 7/148 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NG+ A+AG GVYFG + NV+ + G R TN AE+ + AL
Sbjct: 224 PPGMLRIYTDGSSLKNGRDTAAAGVGVYFGPGDTRNVSEPLQGSRQTNQRAELTAILRAL 283
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A V I +DS++ I CV W KW+ N W AD KPV+NK+ ++ +L +I +
Sbjct: 284 DIAPRHR--DVTIVTDSRYAIDCVTVWFIKWRRNNWLTADQKPVENKDLIESILVKIEER 341
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMA 145
+K +E+V GH GN AD +A
Sbjct: 342 TELKVKTLFEWVKGHNRDPGNEAADRLA 369
>gi|380475734|emb|CCF45096.1| hypothetical protein CH063_14289 [Colletotrichum higginsianum]
Length = 352
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 1 MDPDNHVV--VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGA 57
++P+ + V+TDG+ NG G+ AG GVYFG N+P NV+ ++ G + TN AE+
Sbjct: 186 VEPETKIYTQVYTDGSSLGNGTAGSVAGVGVYFGPNDPRNVSERLEGELQTNQRAELTAI 245
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
+ A + S + I +DS++ IKCV EW W+ N WR + V+NK+ +Q + +
Sbjct: 246 LRAFQL--SPLTQPIEIVTDSKYSIKCVTEWYENWEKNKWRTSTNNEVKNKDLIQAVREE 303
Query: 118 IGQMES----VKWEFVPGHGNSHGNMKADEMA 145
I + ++ + +V GH N GN ADE+A
Sbjct: 304 IAKRDAAGTKTNFVWVKGHNNHPGNAAADELA 335
>gi|119495985|ref|XP_001264766.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
gi|119412928|gb|EAW22869.1| reverse transcriptase, RNaseH, putative [Neosartorya fischeri NRRL
181]
Length = 221
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 11/153 (7%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALK 62
+H+VV DGAC +NGK GA + YGV++G NN LN A V G TN AE++ + AL
Sbjct: 52 DHIVVAVDGACSKNGKDGARSSYGVFWGHNNVLNTAVPVEGEGHHTNQVAELRACMRALL 111
Query: 63 ---------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE 113
+ + + V IKSDS+++++ V EW+PKW+ NGW+ + G V N E +
Sbjct: 112 DVVHVKSLFEDQGITLSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEHFKA 171
Query: 114 LLHQIGQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ +E K H N AD MA+
Sbjct: 172 IERLTEDLERQKLILKFWHVPRRNNRDADTMAK 204
>gi|261192988|ref|XP_002622900.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239589035|gb|EEQ71678.1| RNase H domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239613618|gb|EEQ90605.1| RNase H domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 434
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG +GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 245 IYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAPRH 304
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK-- 125
V I +DS++ I CV W WQ N W A KPV+NK+ +Q +L +I + +
Sbjct: 305 R--DVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILMKIEERTVMNVK 362
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN AD +A + A
Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGA 388
>gi|170085781|ref|XP_001874114.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651666|gb|EDR15906.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 561
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV++DGAC NGKVG+ AG GV++G N+P N+A + G TNN AE+ AI + ++
Sbjct: 94 VVYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELI-AIARVLESTPR 152
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK------EELQELLHQIGQM 121
+ + IK+DSQ+ I C Q W+ W NGW + +PV+N L +L + GQ
Sbjct: 153 SKKPLLIKTDSQYSINCFQNWISNWSRNGWVNSSKEPVKNAGIIRYISALLDLRAKSGQ- 211
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V+ ++V GH GN AD A
Sbjct: 212 -KVRLQYVKGHSGDTGNDGADAQA 234
>gi|341892209|gb|EGT48144.1| hypothetical protein CAEBREN_24105 [Caenorhabditis brenneri]
Length = 384
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKS 66
+++TDG+ NG+ GA GYGV + L+ +G + G TNN E++G + +
Sbjct: 6 IIYTDGSTVNNGREGARGGYGVVCLFDRQLDTSGSFSFGNQTNNRYELEGIKKGIDIIRR 65
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM----- 121
N + I++DS++ +K V E++ W+ NGW+ A G+ V+NK +L E +H+ M
Sbjct: 66 VNHNHFIIRTDSEYSLKSVTEYVKAWKKNGWKTASGEDVKNK-KLIEKIHRYVMMLADRG 124
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ VK+E V GHG N++AD +AR AA
Sbjct: 125 KIVKFEHVKGHGTDEFNIEADRLARAAA 152
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 45 GRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKP 104
G+ T E++G A + A++ K DSQ +K + E + W+ N W+ + G+P
Sbjct: 255 GKQTKERYELEGFFVATEMARTGKDMYYIFKCDSQDTLKMITESLEIWKQNDWKTSSGEP 314
Query: 105 VQNKEELQELLHQIGQMES--VKWEF--VPGHGNSHGNMKADEMAR 146
VQ++ LQ + + ++ S VK EF V G+G + N ADE+A+
Sbjct: 315 VQHRGLLQSIDRNLRKLRSDGVKIEFKHVRGNGMDYYNNIADELAQ 360
>gi|402225199|gb|EJU05260.1| hypothetical protein DACRYDRAFT_19826 [Dacryopinax sp. DJM-731 SS1]
Length = 305
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC NG+ GA+ G GVY+G N++ ++ G TNN AE+ + AL+
Sbjct: 115 VVYTDGACSGNGRAGATGGIGVYWGPGM-KNISERLPGAQTNNRAELIALVRALETDPDP 173
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-VKW 126
+ +K+DS + I+C+++W+PKW+ NG++ + G PV+NKE L L + + + ++
Sbjct: 174 AAP-LILKTDSSYSIQCMRDWLPKWRKNGFQTSKG-PVKNKELLLYLSYLMEERPGHIRL 231
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+ V GH GN AD +A AG
Sbjct: 232 QHVRGHAGVEGNEIADRLAVAGAG 255
>gi|299756462|ref|XP_001829350.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
gi|298411687|gb|EAU92310.2| hypothetical protein CC1G_00529 [Coprinopsis cinerea okayama7#130]
Length = 539
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D +VV+TDGA NG+ G+ AG GV++G ++P N+A + G TNN AE+ + L
Sbjct: 92 DESEWLVVYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVL 151
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ------ELL 115
+ A + + IKSDSQ+ + C+Q W+P W GW+ A G+PV+N ++ +
Sbjct: 152 ETAPISKTP-LLIKSDSQYSMNCLQVWLPGWVKRGWKNAKGEPVKNAPIIRLISAHLDRR 210
Query: 116 HQIGQMESVKWEFVPGHGNSHGNMKADEMA 145
Q+GQ V+ +V GH + GN AD A
Sbjct: 211 AQLGQ--KVRMVYVEGHSGNVGNDGADAQA 238
>gi|119496353|ref|XP_001264950.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
gi|119413112|gb|EAW23053.1| RNase H domain protein [Neosartorya fischeri NRRL 181]
Length = 412
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 7/148 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P + ++TDG+ +NG+ A+AG GV+FG + NV+ + G R TN AE+ + AL
Sbjct: 237 PPGMLRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGNRQTNQRAELTAILRAL 296
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A V I +DS++ I CV W KW+ N W AD KPV+NK+ ++ +L +I +
Sbjct: 297 DIAPRHR--DVTIFTDSRYAIDCVTVWFVKWRKNNWLTADQKPVENKDLIESILVKIEER 354
Query: 122 ESVK----WEFVPGHGNSHGNMKADEMA 145
+K +E+V GH GN AD +A
Sbjct: 355 NELKVKTLFEWVKGHNRDPGNEAADRLA 382
>gi|70991232|ref|XP_750465.1| ribonuclease H [Aspergillus fumigatus Af293]
gi|66848097|gb|EAL88427.1| ribonuclease H, putative [Aspergillus fumigatus Af293]
gi|159130938|gb|EDP56051.1| ribonuclease H, putative [Aspergillus fumigatus A1163]
Length = 410
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
+ P + ++TDG+ +NG+ A+AG GV+FG + NV+ + G R TN AE+ +
Sbjct: 233 IGPPGMLRIYTDGSALKNGRDTAAAGVGVFFGPGDTRNVSEPLRGDRQTNQRAELTAILR 292
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL A V I +DS++ I CV W KW+ N W AD KPV+NK+ ++ +L +I
Sbjct: 293 ALDIAPRHR--DVTIFTDSRYAIDCVTVWFVKWRKNNWLTADQKPVENKDLIESILVKIE 350
Query: 120 QMESVK----WEFVPGHGNSHGNMKADEMA 145
+ +K +E+V GH GN AD +A
Sbjct: 351 ERNELKVKTLFEWVKGHNRDPGNEAADRLA 380
>gi|258569833|ref|XP_002543720.1| ribonuclease H [Uncinocarpus reesii 1704]
gi|237903990|gb|EEP78391.1| ribonuclease H [Uncinocarpus reesii 1704]
Length = 418
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQ 63
N + ++TDG+ NGK+ A AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 237 NMLNIYTDGSALGNGKLRAKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRALDI 296
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A V I +DS++ I CV W +WQ N W AD KPV+NK+ +Q +L +I + S
Sbjct: 297 APRHR--DVTIYTDSKYSIDCVTVWCIRWQRNKWMTADSKPVENKDLIQSILTKIEERTS 354
Query: 124 VK----WEFVPGHGNSHGNMKADEMA 145
+ +E+V GH GN AD +A
Sbjct: 355 LNVKTLFEWVKGHNKHPGNEAADRLA 380
>gi|302697371|ref|XP_003038364.1| hypothetical protein SCHCODRAFT_47645 [Schizophyllum commune H4-8]
gi|300112061|gb|EFJ03462.1| hypothetical protein SCHCODRAFT_47645, partial [Schizophyllum
commune H4-8]
Length = 266
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDGAC NG+ G+ AG GV++G + N++ + G TNN AE+ L+
Sbjct: 122 VVYTDGACSGNGRPGSLAGVGVWYGVGDERNMSERCPGDQTNNRAELIAIARVLETFPYK 181
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK------EELQELLHQIGQM 121
+ I +DS++ I+C ++W+P W++ GWRKA+G+PV N + L E ++G
Sbjct: 182 RDRPLKIMTDSKYSIQCFRDWIPNWRNRGWRKANGEPVLNVGLIKYIDSLLEFRSRLGH- 240
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V+ E V GH GN AD +A
Sbjct: 241 -KVRLEHVRGHSGVPGNEGADRLA 263
>gi|336259183|ref|XP_003344395.1| hypothetical protein SMAC_08988 [Sordaria macrospora k-hell]
gi|380089306|emb|CCC12865.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 326
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIH 59
+D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ +
Sbjct: 171 LDATKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLR 230
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL+ + +++DSQ+ I CV W W NGWR + G+ V N++ + + +I
Sbjct: 231 ALETI--PDTQSCELRTDSQYTINCVTTWYKSWMKNGWRNSKGEDVSNQDLIAAIRKKIE 288
Query: 120 QMES----VKWEFVPGHGNSHGNMKADEMA 145
E+ K+ +V GHG GN+ AD +A
Sbjct: 289 TREAKGTETKFVWVKGHGTDEGNIAADVLA 318
>gi|341898711|gb|EGT54646.1| hypothetical protein CAEBREN_25594 [Caenorhabditis brenneri]
Length = 384
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKS 66
+++TDG+ NG+ GA GYGV + L+ +G + G TNN E++G + +
Sbjct: 6 IIYTDGSTVNNGREGARGGYGVVCLFDRQLDTSGSFSFGNQTNNRYELEGIKKGIDIIRR 65
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
N + I++DS++ +K V +++ W+ NGW+ A G+ V+NK +L E +H+ M +
Sbjct: 66 VNHNHFIIRTDSEYSLKSVTQYVKTWKKNGWKTASGEDVKNK-KLIEKIHRYVMMLADRG 124
Query: 124 --VKWEFVPGHGNSHGNMKADEMARDAA 149
VK+E V GHG N++AD +AR AA
Sbjct: 125 KIVKFEHVKGHGTDEFNIEADRLARAAA 152
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 23 ASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFM 81
A GY V + + G G+ T E++G A + A++ K DSQ
Sbjct: 232 ARCGYAVVCASDRIKDAYGYFQHGKQTKERYELEGFFVATEMARTGKDMYYIFKCDSQDT 291
Query: 82 IKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM--ESVKWEF--VPGHGNSHG 137
+K + E + W+ N W+ + G+PVQ++ LQ + + ++ + VK EF V G+G +
Sbjct: 292 LKMITESLEIWKQNDWKTSSGEPVQHRGLLQSIDRNLRKLCSDGVKIEFKHVRGNGMDYY 351
Query: 138 NMKADEMAR 146
N ADE+A+
Sbjct: 352 NNIADELAQ 360
>gi|146322556|ref|XP_752368.2| ribonuclease H1 [Aspergillus fumigatus Af293]
gi|129557726|gb|EAL90330.2| ribonuclease H1, putative [Aspergillus fumigatus Af293]
gi|159131123|gb|EDP56236.1| reverse transcriptase, RNaseH, putative [Aspergillus fumigatus
A1163]
Length = 221
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR--VTNNNAEIQGAIHAL 61
++H+VV DGAC +NG+ GA + YGV++G NN LN A V G TN AE++ + AL
Sbjct: 51 NDHIVVAVDGACLKNGQDGARSSYGVFWGHNNVLNTAVPVEGEGNHTNQVAELRACMRAL 110
Query: 62 KQAKSAN---------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ 112
+ V IKSDS+++++ V EW+PKW+ NGW+ + G V N E +
Sbjct: 111 LDVVHVRSLFEDQGIILSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEHFK 170
Query: 113 ELLHQIGQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ +E K H N AD MA+
Sbjct: 171 AIERLTEDLERHKLTIKFWHVPRRNNRDADTMAK 204
>gi|255948658|ref|XP_002565096.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592113|emb|CAP98437.1| Pc22g11490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG ASAG GVYFG + NV+ + G R TN AE+ + A+ A
Sbjct: 226 IYTDGSSLRNGTPLASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAIDIAPRH 285
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK-- 125
V I +DS++ I CV W W+ N W D KPV+NK+ ++ +L +I + +K
Sbjct: 286 R--DVTIITDSRYSIDCVTVWFINWRRNNWMTRDKKPVENKDLVESILVKIEERNDLKVK 343
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN +AD++A D A
Sbjct: 344 TLFEWVKGHNKDPGNEEADKLAVDGA 369
>gi|348679769|gb|EGZ19585.1| hypothetical protein PHYSODRAFT_496359 [Phytophthora sojae]
Length = 330
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 14/161 (8%)
Query: 2 DPD----NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQG 56
DPD + +V F DG+ NG+ G AGY F N NVA + V RVTNN AE
Sbjct: 164 DPDPKDPSSLVAFCDGSALENGRRGCRAGYACIFPHNESWNVAKQLVEDRVTNNRAEYMA 223
Query: 57 AIHALKQA--KSANIDRVC-IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE 113
A+ A+K+A + RV I SDS +I+ + EW+ WQ N W+K+DG VQN++ L+
Sbjct: 224 ALEAMKRANIEDPEASRVLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLEL 283
Query: 114 LLHQIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
L+ + G+ V+W V H S N AD AR AA
Sbjct: 284 LMAEKGKRR-VRWTHVKAHTGKKDWRSKWNDVADNAARGAA 323
>gi|358368950|dbj|GAA85566.1| ribonuclease H [Aspergillus kawachii IFO 4308]
Length = 412
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NGK ASAG GVYFG ++ NV+ + G R TN AE+ + A
Sbjct: 232 PPGMLRIYTDGSSLKNGKALASAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 291
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DSQ+ I CV W KW+ N W A KPV NK+ ++ +L +I +
Sbjct: 292 LDIAPRHR--DVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEE 349
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+K +E+V GH + GN AD +A A
Sbjct: 350 RNELKVKTLFEWVKGHSSHPGNEAADRLAVSGA 382
>gi|408391903|gb|EKJ71269.1| hypothetical protein FPSE_08508 [Fusarium pseudograminearum CS3096]
Length = 447
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+ ++TDG+ NGK G SAG GV+FG + N++ ++ G TN AE+ + A++
Sbjct: 296 IRIYTDGSSLGNGKPGCSAGLGVFFGPGDVRNLSERLPGLPQTNQRAELLAILRAMEMVP 355
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
+ + I +DS++ I CV EW W+ GWR A GKPV N + ++++L + + E+
Sbjct: 356 LNQV--IEIWTDSKYSINCVTEWHTNWEKRGWRTAQGKPVMNLDIIRDILAKKREREAAG 413
Query: 124 --VKWEFVPGHGNSHGNMKADEMA 145
K+++V GHG++ GN++AD +A
Sbjct: 414 AVTKFQWVKGHGSNPGNIEADRLA 437
>gi|358378287|gb|EHK15969.1| hypothetical protein TRIVIDRAFT_56712 [Trichoderma virens Gv29-8]
Length = 302
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 7/142 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSA 67
++TDG+ NG+ G+ AG GVYFGEN+P N++ ++ G TN AE+ AL+ A
Sbjct: 156 IWTDGSSLANGRAGSRAGLGVYFGENDPRNLSERLIGEPQTNQRAELMAMQRALEIASLE 215
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----S 123
V I SDSQ+ IKCV EW W+ W A G+ V+N++ ++ +L +I + + +
Sbjct: 216 Q--HVRIHSDSQYSIKCVTEWAVGWKQKNWLTASGEKVKNQDIIRAVLDKIDERKRAGGN 273
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+++V GH + GN+ AD +A
Sbjct: 274 TYFQWVKGHATNVGNIAADRLA 295
>gi|354567717|ref|ZP_08986885.1| Ribonuclease H [Fischerella sp. JSC-11]
gi|353542175|gb|EHC11639.1| Ribonuclease H [Fischerella sp. JSC-11]
Length = 304
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK-SA 67
++TDGAC N G G VYF ++ ++ G TNN E+Q AI AL K S
Sbjct: 10 IYTDGACIGNPGPGG-WGVVVYF-DDGSVHEMGNAAAETTNNKMEMQAAIAALSFLKASG 67
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
+ + SDS+++I CV +W+ W+ GW+KADG PV N+ +LL Q+ Q+ S V+
Sbjct: 68 QTQPITLYSDSEYLINCVTKWIKTWKRKGWKKADGSPVLNR----DLLEQLEQLNSRQVQ 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHAGNVGNERCDAIARAFAS 148
>gi|346323444|gb|EGX93042.1| ribonuclease H, putative [Cordyceps militaris CM01]
Length = 337
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+ V+TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL+
Sbjct: 190 IRVYTDGSSLANGKAGARAGVGVFFGPGDARNISERLEGEPQTNQRAELMAMLRALQMCP 249
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME--- 122
V I SDSQ+ I CV +W W+ GW A G+PV+N++ ++ +L ++ +
Sbjct: 250 LGQT--VQIVSDSQYSINCVTQWAASWKKKGWVTATGEPVKNQDIIRAVLSRMEERVKAG 307
Query: 123 -SVKWEFVPGHGNSHGNMKADEMA 145
+ ++E+V GH + GN AD +A
Sbjct: 308 GTTQFEWVKGHSSDRGNQAADALA 331
>gi|190344328|gb|EDK35984.2| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 24/163 (14%)
Query: 9 VFTDGACPRNGKVGA-SAGYGVYFGENNPLNVA---GKV----TGRVTNNNAEIQGAIHA 60
++ DGA NGKV + +GYGV++GE + N A KV TG TN AE+ HA
Sbjct: 97 IYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTG--TNQRAELHALNHA 154
Query: 61 L----KQAKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
L K+ N + I SDSQ+ IK V EW KW++NGWR A G PV NK+ +++ +
Sbjct: 155 LDDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAV 214
Query: 116 HQIG---------QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
++ +M + +VPGH ++GN AD++A A
Sbjct: 215 DKVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGA 257
>gi|146421520|ref|XP_001486705.1| hypothetical protein PGUG_00082 [Meyerozyma guilliermondii ATCC
6260]
Length = 260
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 24/163 (14%)
Query: 9 VFTDGACPRNGKVGA-SAGYGVYFGENNPLNVA---GKV----TGRVTNNNAEIQGAIHA 60
++ DGA NGKV + +GYGV++GE + N A KV TG TN AE+ HA
Sbjct: 97 IYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTG--TNQRAELHALNHA 154
Query: 61 L----KQAKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
L K+ N + I SDSQ+ IK V EW KW++NGWR A G PV NK+ +++ +
Sbjct: 155 LDDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAV 214
Query: 116 HQIG---------QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
++ +M + +VPGH ++GN AD++A A
Sbjct: 215 DKVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGA 257
>gi|220908688|ref|YP_002483999.1| Ribonuclease H [Cyanothece sp. PCC 7425]
gi|259494077|sp|B8HPS9.1|RNH_CYAP4 RecName: Full=Ribonuclease H; Short=RNase H
gi|219865299|gb|ACL45638.1| Ribonuclease H [Cyanothece sp. PCC 7425]
Length = 157
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 8/143 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YFG+ + ++ G TNN E+Q AI AL+ ++
Sbjct: 8 IYTDGACSGNPGPG---GWGVVVYFGDGS-VHEMGGAAAATTNNRMEMQAAIAALEFCQA 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + +DS+++ K + EW+P W+ GW+ A GKPV N ++L ++L Q+ +SV W
Sbjct: 64 AGHPPVILYTDSEYVKKGITEWLPGWKRKGWKTAQGKPVLN-QDLWQVLDQL-NTKSVNW 121
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH + GN + D +AR A
Sbjct: 122 QYVRGHSGNAGNERCDAIARAFA 144
>gi|115388643|ref|XP_001211827.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195911|gb|EAU37611.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 390
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ +NGK A+AG GVYFG E++ NV+ + G R TN AE+ + A
Sbjct: 214 PPGMLHIYTDGSSLKNGKALAAAGVGVYFGPEDSSRNVSEPLRGSRQTNQRAELTAILRA 273
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DSQ+ I CV W +W+ N W A K V+NK+ ++ +L +I +
Sbjct: 274 LDIAPRHR--DVTIFTDSQYAINCVTVWFVRWRRNNWMTAGNKMVENKDLIEAILSKIEE 331
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
E +K +++V GH + GN+ AD +A + A
Sbjct: 332 REELKVKTLFQWVKGHNDDPGNVAADRLAVNGA 364
>gi|400600526|gb|EJP68200.1| ribonuclease H [Beauveria bassiana ARSEF 2860]
Length = 338
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+ V+TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL+
Sbjct: 191 IRVYTDGSSLANGKAGARAGVGVFFGPGDERNLSERLEGEPQTNQRAELMAMLRALQTCP 250
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM---- 121
+ V I SDSQ+ I CV +W W+ GW A G+PV+N++ ++ +L ++ +
Sbjct: 251 AGAT--VQIVSDSQYSINCVTQWAASWKRKGWVTAQGEPVKNQDIIRAVLARMEERGKAG 308
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+ ++E+V GH + GN AD +A
Sbjct: 309 GATQFEWVKGHASDRGNQAADALA 332
>gi|393239034|gb|EJD46568.1| RnaseH-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 386
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 8 VVFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V++TDGAC NG A AG GV+ ++ V+ + G TNN AE+ I AL+
Sbjct: 86 VLYTDGACSNNGNGAAALAGIGVWSADDKTRRVSERCPGEQTNNRAELIAIIRALESTPF 145
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--LHQIGQME-S 123
++ +K+DS++ CV +WM KW NGW+ A G+PV+N+ + L L Q+ +M
Sbjct: 146 GG-KQLLVKTDSEYARNCVYQWMSKWNENGWKNAHGQPVKNQPLILYLAALLQLREMRGK 204
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
V+ + V GH GN AD +AR
Sbjct: 205 VRLQHVRGHSGDTGNEAADSLAR 227
>gi|341892193|gb|EGT48128.1| hypothetical protein CAEBREN_20816 [Caenorhabditis brenneri]
Length = 178
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQA 64
+V+FTDGA RNG+ A G+ VY + + + G + G+ +NN +E QG + A+K A
Sbjct: 8 LVIFTDGAALRNGQRDAKGGWAFVYRMNGSRVEIKGFIPFGKQSNNLSEFQGILEAIKHA 67
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES- 123
I + I++DSQ+ I C+ +W W+ NGW+ + G V+N+E ++ + + ++
Sbjct: 68 YGERIYNITIRTDSQYAINCLLKWYWNWRKNGWKTSYGTDVKNREIIETIRSWMTAIDDR 127
Query: 124 ---VKWEFVPGHGNSHGNMKADEMARDAA 149
V+ E VPGHG + N AD +A AA
Sbjct: 128 GGYVRLEHVPGHGTNVLNNLADSLANQAA 156
>gi|171677308|ref|XP_001903605.1| hypothetical protein [Podospora anserina S mat+]
gi|170936722|emb|CAP61380.1| unnamed protein product [Podospora anserina S mat+]
Length = 311
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+V+TDGA P NGK GA G GV+FG ++P NV+ ++ G + TN AE+ + AL+
Sbjct: 154 TMVYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQL-- 211
Query: 66 SANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES- 123
++D + I++DSQ+ I CV +W W GW+ A G PV+N + ++ + + E+
Sbjct: 212 -VDLDSPIEIRTDSQYSIDCVTKWYVSWVKKGWKTAGGTPVKNADLVKSIRDLMEDREAK 270
Query: 124 ---VKWEFVPGHGNSHGNMKADEMA 145
V GH +GN +AD +A
Sbjct: 271 GTITILTKVVGHSGDYGNDQADRLA 295
>gi|295659076|ref|XP_002790097.1| ribonuclease H [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281999|gb|EEH37565.1| ribonuclease H [Paracoccidioides sp. 'lutzii' Pb01]
Length = 420
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
++TDG+ RNG++GA AG GVYFG + NV+ + G R TN AE+ I AL A
Sbjct: 243 IYTDGSSLRNGRMGAKAGVGVYFGPGDKSRNVSEPLKGSRQTNQRAELTAIIRALDIAPR 302
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK- 125
V I +DS++ I CV W WQ N W ++ KPV+NK+ +Q +L +I + +
Sbjct: 303 HR--DVTIFTDSKYAINCVTVWFVNWQRNKWMTSEDKPVENKDLIQSILEKIQERTVLNV 360
Query: 126 ---WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN AD +A + A
Sbjct: 361 KTLFEWVRGHNRDPGNEAADWLAVNGA 387
>gi|340517696|gb|EGR47939.1| hypothetical protein TRIREDRAFT_4265 [Trichoderma reesei QM6a]
Length = 309
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK 62
+N + ++TDG+ NGK GA AG GV+FGEN+P N+A ++ G TN AE+ AL+
Sbjct: 158 ENVLNIWTDGSSLANGKAGARAGLGVWFGENDPRNLAERLPGEPQTNQRAELLAMQRALE 217
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A R I SDSQ+ IKCV +W W+ W A G+ V+N++ ++ +L +I +
Sbjct: 218 IAPLEQTVR--IHSDSQYSIKCVTQWADGWKRKNWLTASGEVVKNQDIIRAVLAKIEERT 275
Query: 123 ----SVKWEFVPGHGNSHGNMKADEMA 145
+ +++V GH + GN+ AD +A
Sbjct: 276 KAGGNTYFQWVKGHDTNIGNIAADRLA 302
>gi|336467695|gb|EGO55859.1| hypothetical protein NEUTE1DRAFT_86567 [Neurospora tetrasperma FGSC
2508]
gi|350287648|gb|EGZ68884.1| hypothetical protein NEUTE2DRAFT_93439 [Neurospora tetrasperma FGSC
2509]
Length = 327
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ + A
Sbjct: 173 DASKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRA 232
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ + +++DSQ+ I CV W KW N WR A G+ V N++ + + +I
Sbjct: 233 LEAI--PDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNAKGEEVSNQDLIVAIRKKIDM 290
Query: 121 ME----SVKWEFVPGHGNSHGNMKADEMA 145
+ K+ +V GHG GN+ AD +A
Sbjct: 291 RDRKAAETKFVWVKGHGTDEGNIAADMLA 319
>gi|322701805|gb|EFY93553.1| RNase H domain protein [Metarhizium acridum CQMa 102]
Length = 448
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 9/143 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK G+ AG GVYFG+ +P NV+ ++ G TN AE+ + AL+ A
Sbjct: 301 IYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIAP-- 358
Query: 68 NIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
+D+ V I SDSQ+ I CV +W W+ GW+ A G+ V+N++ ++ +L ++ +
Sbjct: 359 -LDQTVQIISDSQYSINCVTQWAIGWKHKGWKTATGENVKNQDIIRAVLDKMDERTKTGA 417
Query: 124 -VKWEFVPGHGNSHGNMKADEMA 145
+ +V GH + GN+ AD +A
Sbjct: 418 HTYFHWVKGHASDRGNVAADRLA 440
>gi|427707770|ref|YP_007050147.1| ribonuclease H [Nostoc sp. PCC 7107]
gi|427360275|gb|AFY42997.1| Ribonuclease H [Nostoc sp. PCC 7107]
Length = 302
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YF + + + G TNN E+Q AI ALK +
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYFNDGSVHEI-GDAASHTTNNKMEMQAAIAALKYFHA 65
Query: 67 ANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ + + + +DS+++I CV +W+ W+ GW+KADG PVQN ++L E+L ++ + +
Sbjct: 66 SQQSQPITLYTDSEYLINCVTKWVKNWKRKGWKKADGNPVQN-QDLLEVLDELNTRQ-IS 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHAGNVGNERCDAIARSFAA 148
>gi|302416407|ref|XP_003006035.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
gi|261355451|gb|EEY17879.1| ribonuclease H [Verticillium albo-atrum VaMs.102]
Length = 328
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAK 65
+ ++TDG+ NGKVGA+AG GV+FG ++ N++ ++ G TN AE+ I AL+ A
Sbjct: 178 LAIYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIAP 237
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME--- 122
V I +DSQ+ I CV W WQ W + G+PV+N++ ++E+ I E
Sbjct: 238 DEQ--DVQIFTDSQYSINCVTSWYKGWQKKDWHNSKGEPVKNRDLVEEVRELIETREAEG 295
Query: 123 -SVKWEFVPGHGNSHGNMKADEMA 145
S + +V GH ++ GN AD +A
Sbjct: 296 ASTVFTWVKGHADNVGNTAADHLA 319
>gi|320040502|gb|EFW22435.1| ribonuclease H [Coccidioides posadasii str. Silveira]
Length = 246
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 62 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 121
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ- 120
A V I +DS++ I CV W +WQ N W D KPV+NK+ +Q + +I +
Sbjct: 122 DIAPRHR--DVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDHKPVENKDLVQSIRAKIEER 179
Query: 121 -MESVK--WEFVPGHGNSHGNMKADEMA 145
+ +VK +E+V GH GN AD +A
Sbjct: 180 TLLNVKTLFEWVKGHNKDPGNEAADRLA 207
>gi|322710650|gb|EFZ02224.1| RNase H domain protein [Metarhizium anisopliae ARSEF 23]
Length = 449
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK G+ AG GVYFG+ +P NV+ ++ G TN AE+ + AL+ A
Sbjct: 302 IYTDGSSLANGKAGSRAGVGVYFGDGDPRNVSERLVGDPQTNQRAELMAMLRALEIAPLE 361
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----S 123
V I SDSQ+ I CV +W W+ GW+ A G+ V+N++ ++ +L ++ + +
Sbjct: 362 QT--VQIISDSQYSINCVTQWAIGWKHKGWKTATGENVKNQDIIRAVLDKMDERTKTGAN 419
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+ +V GH + GN+ AD +A
Sbjct: 420 TYFHWVKGHASDRGNVAADRLA 441
>gi|119196199|ref|XP_001248703.1| hypothetical protein CIMG_02474 [Coccidioides immitis RS]
gi|392862084|gb|EJB10457.1| RNase H domain-containing protein [Coccidioides immitis RS]
Length = 420
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 236 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 295
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ- 120
A V I +DS++ I CV W +WQ N W D KPV+NK+ +Q + +I +
Sbjct: 296 DIAPRHR--DVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDNKPVENKDLVQSIRAKIEER 353
Query: 121 -MESVK--WEFVPGHGNSHGNMKADEMA 145
+ +VK +E+V GH GN AD +A
Sbjct: 354 TLLNVKTLFEWVKGHNKDPGNEAADRLA 381
>gi|321476812|gb|EFX87772.1| hypothetical protein DAPPUDRAFT_96634 [Daphnia pulex]
Length = 291
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR--VTNNNAEIQGAIHALKQA 64
V V+TDG C + G A AG GV+FG N+ LN++ + R + + AE++ AI A+K A
Sbjct: 144 VRVYTDGICLQKGHPDAQAGIGVWFGRNHQLNLSEPLDDRDDTSKSAAEVRAAIEAIKIA 203
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ I R+ I ++S+++ ++ + W NGWRK G +++++ +ELL + +M+ V
Sbjct: 204 KAWGIGRMAIHTESKYLRNVIENLIFYWMDNGWRKTTGNLIKHRKLWRELLFTLEEMD-V 262
Query: 125 KWEFVPGHG-NSHGNMKADEMARDAA 149
+W+++ G G G+ A +AR+ A
Sbjct: 263 EWKYLKGPGIYDDGSSAAKRLAREGA 288
>gi|301106002|ref|XP_002902084.1| ribonuclease, putative [Phytophthora infestans T30-4]
gi|262098704|gb|EEY56756.1| ribonuclease, putative [Phytophthora infestans T30-4]
Length = 317
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 2 DPD----NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQG 56
DPD +V F DG+ NG+ AGY F NVA + V R TNN AE
Sbjct: 152 DPDPKDPKTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRATNNRAEYMA 211
Query: 57 AIHALKQAKSANIDR---VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE 113
A+ A+K+A + +R + I SDS +I+ + EW+ WQ N W K+DG PVQN++ L+
Sbjct: 212 ALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLEL 271
Query: 114 LLHQIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
L+ + G ++W V H S N AD AR+AA
Sbjct: 272 LVAEKGS-RRIRWTHVKAHTRKQDWRSKWNDVADNAARNAA 311
>gi|425774710|gb|EKV13011.1| Ribonuclease H, putative [Penicillium digitatum PHI26]
gi|425780703|gb|EKV18704.1| Ribonuclease H, putative [Penicillium digitatum Pd1]
Length = 398
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNG ASAG GVYFG + NV+ + G R TN AE+ + A+ A
Sbjct: 229 IYTDGSSLRNGTPLASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRAIDIAPRH 288
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK-- 125
V I +DS++ I CV W W+ N W D KPV+NK+ ++ +L +I + ++
Sbjct: 289 R--DVTIITDSRYSIDCVTVWFINWRRNNWMTRDKKPVENKDLVESILVKIEERNDLEVK 346
Query: 126 --WEFVPGHGNSHGNMKADEMARDAA 149
+E+V GH GN +AD++A + A
Sbjct: 347 TLFEWVKGHNKDPGNEEADKLAVNGA 372
>gi|303321962|ref|XP_003070975.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240110672|gb|EER28830.1| RNase H domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 420
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHAL 61
P N + ++TDG+ NGK + AG GVYFG + NV+ + G R TN AE+ AL
Sbjct: 236 PPNMLKIYTDGSSLGNGKAVSKAGVGVYFGPGDERNVSEPLKGNRQTNQRAELTAISRAL 295
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ- 120
A V I +DS++ I CV W +WQ N W D KPV+NK+ +Q + +I +
Sbjct: 296 DIAPRHR--DVTIYTDSKYAIDCVTVWFVRWQRNKWMTTDHKPVENKDLVQSIRAKIEER 353
Query: 121 -MESVK--WEFVPGHGNSHGNMKADEMA 145
+ +VK +E+V GH GN AD +A
Sbjct: 354 TLLNVKTLFEWVKGHNKDPGNEAADRLA 381
>gi|324519243|gb|ADY47325.1| Ribonuclease H1 [Ascaris suum]
Length = 245
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
VV+ DGA + AG G+++G ++P N+ VTG ++TN AE+Q A+ QA S
Sbjct: 69 VVYCDGA---YDWLTGKAGIGIFWGPSDPRNLHLAVTGCKITNIRAEVQAVSIAILQASS 125
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ R+CIK+D F +K + WM KW+ NGWRKA G ++N +++++L ++ ++ V+
Sbjct: 126 LKMQRICIKTDCNFAVKVINLWMEKWRKNGWRKASGAHIENIDDIKKLNDRL-ELLKVRI 184
Query: 127 EFVPGHGNSHGNMKADE 143
E V H +K +E
Sbjct: 185 EHVYAHQKFAEKLKHEE 201
>gi|225710774|gb|ACO11233.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 291
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
M+ D V VFTDGAC NG+ GAS G G++F +N+ N + + R TNN AE+
Sbjct: 136 MNKDGWVKVFTDGACIHNGRGGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 195
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGW-RKADGKPVQNKEELQELLHQI 118
A+ KS + ++ I +DSQF I ++ MP W+ W R + G+ V+NK E +L I
Sbjct: 196 AIHIVKSDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFL-VLDDI 254
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ ++K+ +VPGH N +GN AD++AR +G
Sbjct: 255 MKNMTIKFIYVPGHRNIYGNNCADKLARRGSG 286
>gi|388580349|gb|EIM20664.1| ribonuclease H-like protein [Wallemia sebi CBS 633.66]
Length = 264
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ VV+TDGAC NGK AG GVY+G+ +PLN+A KV G TNN E+ G I AL+
Sbjct: 90 DDSAVVYTDGACTDNGKKNPKAGCGVYWGKGSPLNLAEKVPGPNQTNNRGEMMGFIRALE 149
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKAD--GKPVQNKEELQELLHQI-G 119
+ ANI + I SDS++ I C+ +W ++ ++ + +P++N + ++ L
Sbjct: 150 RC-PANIKHLSIYSDSEYTINCLTKWRQGYEKRNFKSSSNPNEPIKNIDMIKYLYALYDN 208
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
S+K +V GH N ADE+A
Sbjct: 209 HTASIKIHWVKGHNKHPDNEAADELA 234
>gi|302510739|ref|XP_003017321.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
gi|291180892|gb|EFE36676.1| hypothetical protein ARB_04201 [Arthroderma benhamiae CBS 112371]
Length = 427
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 252 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 311
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DS++ I CV W WQ N W + KPV+NK+ +Q +L +I +
Sbjct: 312 LDIAPKHR--DVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEE 369
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+S+K +E+V GH GN AD +A + A
Sbjct: 370 RKSLKVKTLFEWVKGHNKDAGNEAADRLAVNGA 402
>gi|358382171|gb|EHK19844.1| hypothetical protein TRIVIDRAFT_68171 [Trichoderma virens Gv29-8]
Length = 219
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 9/153 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQ 63
N +++ DGAC NGK GA A GV+ G + N + ++ TN AE+Q I AL Q
Sbjct: 66 NCIIIAVDGACKGNGKPGARASVGVFVGNESEYNKSVLLSESNATNQVAELQAGILALHQ 125
Query: 64 AKSAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
A + V IK+DS++++K + EW+ KW++NG+R + G PV N Q+L
Sbjct: 126 AMKIRDIGLDGEELHEVVIKADSEYLVKGMTEWIFKWKANGYRTSKGTPVTNSALFQKLE 185
Query: 116 HQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+G + + E + H N +ADE+A A
Sbjct: 186 ELVGDLNASDVEVLFWHVPRSQNTRADELANKA 218
>gi|393239032|gb|EJD46566.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 390
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 8 VVFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V++TDGAC NGK A AG GV+ E+ ++ + G TNN AE+ I AL+
Sbjct: 86 VLYTDGACSNNGKGAAALAGIGVWSAEDEGRRLSERCPGEQTNNRAELIAIIRALESTPF 145
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--LHQIGQME-S 123
++ +K+DS++ + CV +WM KW NGW+ A G+PV+N++ L+ L L Q+ M
Sbjct: 146 GG-KQLLVKTDSEYALNCVYQWMRKWSDNGWKTAAGQPVKNQQLLRYLSALLQLRDMRGK 204
Query: 124 VKWEFVPGHGNSHGN 138
V+ + V GH GN
Sbjct: 205 VRLQHVRGHNGDTGN 219
>gi|326472277|gb|EGD96286.1| RNase H domain-containing protein [Trichophyton tonsurans CBS
112818]
gi|326483333|gb|EGE07343.1| hypothetical protein TEQG_08753 [Trichophyton equinum CBS 127.97]
Length = 381
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 206 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 265
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DS++ I CV W WQ N W + KPV+NK+ +Q +L +I +
Sbjct: 266 LDIAPKHR--DVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEE 323
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+S+K +E+V GH GN AD +A + A
Sbjct: 324 RKSLKVKTLFEWVKGHNKDAGNEAADRLAVNGA 356
>gi|327295675|ref|XP_003232532.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
gi|326464843|gb|EGD90296.1| RNase H domain-containing protein [Trichophyton rubrum CBS 118892]
Length = 381
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN AE+ A
Sbjct: 206 PPGMLKIYTDGSALRNGTSQARAGVGVYFGPDDESRNVSEPLAGSRQTNQRAELTAISRA 265
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DS++ I CV W WQ N W + KPV+NK+ +Q +L +I +
Sbjct: 266 LDIAPKHR--DVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQAILSKIEE 323
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+S+K +E+V GH GN AD +A + A
Sbjct: 324 RKSLKVKTLFEWVKGHNKDAGNEAADRLAVNGA 356
>gi|308493705|ref|XP_003109042.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
gi|308247599|gb|EFO91551.1| hypothetical protein CRE_11730 [Caenorhabditis remanei]
Length = 170
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAG-KVTGRVTNNNAEIQGAIHALKQA- 64
+ V+TDG RNG+ A G+ V F + N G G TNN E++ ALK
Sbjct: 14 IRVYTDGCALRNGRSDAKGGWAVVFQNDRLFNATGFSEYGPQTNNRYELKAIEEALKIVL 73
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-- 122
+ V I +DS + I + W W NGWR ++G PV NKE ++ + IG M+
Sbjct: 74 RDGPAYNVTIVTDSHYAINSITMWRNNWIQNGWRTSNGTPVANKELIETIYSMIGDMQQI 133
Query: 123 --SVKWEFVPGHGNSHGNMKADEMARDAA 149
SV++E+V H N +AD MA+DAA
Sbjct: 134 GGSVRFEYVVAHSGDWLNDRADRMAKDAA 162
>gi|85093608|ref|XP_959725.1| hypothetical protein NCU05750 [Neurospora crassa OR74A]
gi|28921176|gb|EAA30489.1| predicted protein [Neurospora crassa OR74A]
Length = 327
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
D V+++TDG+ NGKVGA AG GVYF N++ ++ G V TN AE+ + A
Sbjct: 173 DASKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRA 232
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ + +++DSQ+ I CV W KW N WR G+ V N++ + + +I
Sbjct: 233 LEAI--PDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNTKGEEVSNQDLIVAIRKKIDT 290
Query: 121 ME----SVKWEFVPGHGNSHGNMKADEMA 145
+ K+ +V GHG GN+ AD +A
Sbjct: 291 RDRKAAETKFVWVKGHGTDEGNIAADMLA 319
>gi|213019774|ref|ZP_03335577.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212994604|gb|EEB55249.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 185
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 8/146 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQ 63
V+++TDGAC N G A +Y EN + + +++G TNN E++ I+ LK
Sbjct: 14 VIIYTDGACSGNPGPGGWAAVVMY--ENKSVFIKKRISGGEENTTNNKMELKAVINGLKM 71
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++ + + EW+ KW++NGW+ AD KPV+N+E QE L ++
Sbjct: 72 LKISC--KVIVHTDSQYIKQGITEWINKWKTNGWKTADKKPVKNRELWQE-LDEVALQHD 128
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V H + N +AD +AR +
Sbjct: 129 INWKWVRAHNGNMYNEEADRLARKES 154
>gi|190570726|ref|YP_001975084.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|190356998|emb|CAQ54387.1| ribonuclease h [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 177
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 8/146 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQ 63
V+++TDGAC N G A +Y EN + + +++G TNN E++ I+ LK
Sbjct: 6 VIIYTDGACSGNPGPGGWAAVVMY--ENKSVFIKKRISGGEENTTNNKMELKAVINGLKM 63
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++ + + EW+ KW++NGW+ AD KPV+N+E QE L ++
Sbjct: 64 LKISC--KVIVHTDSQYIKQGITEWINKWKTNGWKTADKKPVKNRELWQE-LDEVALQHD 120
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V H + N +AD +AR +
Sbjct: 121 INWKWVRAHNGNMYNEEADRLARKES 146
>gi|119897063|ref|YP_932276.1| RnhA1 protein [Azoarcus sp. BH72]
gi|119669476|emb|CAL93389.1| RnhA1 protein [Azoarcus sp. BH72]
Length = 149
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G G+GV TNN E+ AI AL+ K
Sbjct: 6 VTIYTDGACRGNPGPG---GWGVILSRGRQYKELYGGEPETTNNRMELTAAIKALEALKR 62
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS+++++ + +W+PKW++ GWRKADGKPV+N +L ++L + + V+W
Sbjct: 63 PL--PVILYTDSKYLVQGMTQWLPKWKAKGWRKADGKPVENA-DLWKVLDEAASVHDVQW 119
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH + GN +AD +A
Sbjct: 120 HWVRGHNGNPGNERADTLA 138
>gi|296419694|ref|XP_002839432.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635582|emb|CAZ83623.1| unnamed protein product [Tuber melanosporum]
Length = 405
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
++TDG+ RNGK A AG GV+FG+ + N++ + G R TN+ AE+ + A+ A
Sbjct: 250 IYTDGSALRNGKPSAIAGVGVWFGDKDSRNISEPLPGPRQTNSRAELTAILRAINVAPMH 309
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----S 123
V I +DS++ IKCV W W N W + G+PV+N++ + ++L ++ + E
Sbjct: 310 R--EVAIYTDSEYAIKCVTVWHINWSKNNWITSVGRPVENQDLIIQILEKLKERERYGSK 367
Query: 124 VKWEFVPGH-GNSHGNMKADEMARDAA 149
+E+V GH G + GN +AD +A + A
Sbjct: 368 TSFEWVQGHTGRNDGNSEADRLAVEGA 394
>gi|343428928|emb|CBQ72473.1| related to Ribonuclease H [Sporisorium reilianum SRZ2]
Length = 203
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFG--ENNPLNVAGKVTGRV-TNNNAEIQGAIHAL 61
N V VFTDGAC NGK A AG+ ++F E L+ + +V GR +N AE+ I A
Sbjct: 18 NVVFVFTDGACIDNGKPSARAGWAIHFPDPELRHLSDSDRVFGRRQSNQRAELFALIRAA 77
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQI 118
+ A +V I +DSQ+ I C +W+ KWQ+NGW+ A G V N++ EL +L ++
Sbjct: 78 YVTR-AETRQVVILTDSQYAINCAGKWLDKWQANGWKNARGTEVHNRDLICELDSVLSRL 136
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAGW 151
+ ++V H GN AD MA+ AA W
Sbjct: 137 AVRPVL--QYVRAHAGHAGNEMADRMAK-AACW 166
>gi|282896288|ref|ZP_06304310.1| Ribonuclease H [Raphidiopsis brookii D9]
gi|281198784|gb|EFA73663.1| Ribonuclease H [Raphidiopsis brookii D9]
Length = 309
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 13/146 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ-AK 65
++TDGAC N G G+GV YF + ++ G+ + TNN EIQ AI AL+ A+
Sbjct: 10 IYTDGACKGNPGPG---GWGVVAYF-HDGSIHEMGEASDHTTNNQMEIQAAIAALQLFAQ 65
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
S ++ + + SDS+++I V +W+ W+ GW+K+DG VQN Q+LL I ++ +
Sbjct: 66 SGQVEPITLYSDSEYLINSVTKWIHGWKKRGWKKSDGTSVQN----QDLLKVIDKLNTNL 121
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
VKW+ V GH + GN + D +AR A
Sbjct: 122 VKWQHVRGHTGNIGNERCDVIARSFA 147
>gi|146309277|ref|YP_001189742.1| ribonuclease H [Pseudomonas mendocina ymp]
gi|145577478|gb|ABP87010.1| Ribonuclease H [Pseudomonas mendocina ymp]
Length = 162
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVT--GRVTNNNAEIQGAIHALKQ 63
++TDGAC NG+ A AG+G Y E L +A V + TNN AE+ A+ AL++
Sbjct: 5 TIYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVEALRR 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ + SDSQ ++K EW+P W++ W+K+D KPV ++ +L E + Q Q
Sbjct: 65 CTKPG--PITLYSDSQLLVKGANEWLPGWKAKDWKKSDKKPVDHR-DLWEQIDQFLQERD 121
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V +V GH GN AD +A
Sbjct: 122 VTLIWVEGHAGHPGNEVADALA 143
>gi|365920334|ref|ZP_09444676.1| ribonuclease HI [Cardiobacterium valvarum F0432]
gi|364578320|gb|EHM55533.1| ribonuclease HI [Cardiobacterium valvarum F0432]
Length = 150
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M+ DN + ++TDGAC N +G Y LN A +T TNN E+ AI A
Sbjct: 1 MNDDNILHIYTDGACKGNPGIGGWGALLCYGPHQKTLNGAEALT---TNNRMELTAAIEA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K A + I +DS ++ + +W+ W+ NGW+ AD KPV+N E Q L + Q
Sbjct: 58 LRAVKRAC--PIVISTDSSYLKNGITQWLAGWKRNGWKTADKKPVKNIELWQALDALVSQ 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDA 148
+ ++W +V GH GN AD++A +A
Sbjct: 116 HQ-IEWRWVKGHSGHPGNEMADQLANEA 142
>gi|347831496|emb|CCD47193.1| similar to ribonuclease H [Botryotinia fuckeliana]
Length = 325
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQ 63
+ + V+TDG+ NGKVGA AGYGV+FG+ + N++ + G TN AE+ A+ AL
Sbjct: 173 DMIKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRAL-- 230
Query: 64 AKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
++ +D+ + I +DS + I C W W NGW+ + GKPV N++ ++++ I +
Sbjct: 231 -ETVPLDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRT 289
Query: 123 SVKWE----FVPGHGNSHGNMKADEMA 145
K + +V GH + GN+ AD +A
Sbjct: 290 KNKAQTNLTWVKGHDENPGNVAADRLA 316
>gi|315044951|ref|XP_003171851.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
gi|311344194|gb|EFR03397.1| hypothetical protein MGYG_06396 [Arthroderma gypseum CBS 118893]
Length = 434
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG A AG GVYFG + NV+ + G R TN AE+ A
Sbjct: 252 PPGMLKIYTDGSALRNGTSRARAGVGVYFGPGDESRNVSEPLAGSRQTNQRAELTAISRA 311
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A V I +DS++ I CV W WQ N W + KPV+NK+ +Q +L +I +
Sbjct: 312 LDIAPKHR--DVTIFTDSKYSIDCVTVWCINWQRNNWVTSAQKPVENKDLIQSILAKIEE 369
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
S+K +E+V GH + GN AD +A + A
Sbjct: 370 RNSLKVKTLFEWVKGHNKNAGNEAADRLAVNGA 402
>gi|154317974|ref|XP_001558306.1| hypothetical protein BC1G_02970 [Botryotinia fuckeliana B05.10]
Length = 325
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQ 63
+ + V+TDG+ NGKVGA AGYGV+FG+ + N++ + G TN AE+ A+ AL
Sbjct: 173 DMIKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRAL-- 230
Query: 64 AKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
++ +D+ + I +DS + I C W W NGW+ + GKPV N++ ++++ I +
Sbjct: 231 -ETVPLDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRT 289
Query: 123 SVKWE----FVPGHGNSHGNMKADEMA 145
K + +V GH + GN+ AD +A
Sbjct: 290 KNKAQTNLTWVKGHDENPGNVAADRLA 316
>gi|389806659|ref|ZP_10203706.1| ribonuclease H [Rhodanobacter thiooxydans LCS2]
gi|388445311|gb|EIM01391.1| ribonuclease H [Rhodanobacter thiooxydans LCS2]
Length = 147
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V FTDGAC N G A G L T TNN E+ AI AL+
Sbjct: 2 SEVEAFTDGACLGNPGPGGWAALLRAKGSERMLAGGDPAT---TNNRMELMAAIGALEAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ RV + +DS+++++ +++W+PKW++NGWR AD KPV+N++ Q L IG + V
Sbjct: 59 RRPC--RVTLTTDSRYVMQGIEQWLPKWRANGWRTADRKPVKNQDLWQRLSDAIGDHQ-V 115
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W++V GH N + D+ AR+ A
Sbjct: 116 RWQWVKGHNGHSENERVDQAAREQA 140
>gi|134106645|ref|XP_778333.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261036|gb|EAL23686.1| hypothetical protein CNBA3330 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 324
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 8/149 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFG---ENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+++VV+TDG+ NG+VG+ AG GV++G E + N A +V G TNN E+ I A
Sbjct: 121 HYLVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRA 180
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQ 117
+++ +I + I+ DSQ+ I C+ W+PKW +N +R + + V N + ++ LL +
Sbjct: 181 IERCPFPDIP-LEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRR 239
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMAR 146
G VK+++VP H GN AD +AR
Sbjct: 240 RGAAGRVKFKYVPAHSGVEGNEAADRLAR 268
>gi|170581800|ref|XP_001895843.1| RNase H family protein [Brugia malayi]
gi|158597074|gb|EDP35304.1| RNase H family protein [Brugia malayi]
Length = 255
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
+V+ DG+ + G G G+++ N+ N +TG ++TN AEIQ A QA S
Sbjct: 74 LVYCDGSFDWTLRKG---GIGIFWSPNDERNAHLSLTGSKLTNIRAEIQAVSLAALQACS 130
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
N DR+ IK+DSQF++K + W+ +W+SN W+KADGK ++N +++Q+ L + +M ++
Sbjct: 131 LNFDRIIIKTDSQFVVKVINSWLSRWRSNEWKKADGKQIENMDDIQK-LSRYTEMIKMRV 189
Query: 127 EFVPGH 132
E GH
Sbjct: 190 EHTYGH 195
>gi|58258539|ref|XP_566682.1| ribonuclease H [Cryptococcus neoformans var. neoformans JEC21]
gi|57222819|gb|AAW40863.1| ribonuclease H, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 321
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 8/149 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFG---ENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+++VV+TDG+ NG+VG+ AG GV++G E + N A +V G TNN E+ I A
Sbjct: 118 HYLVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRA 177
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQ 117
+++ +I + I+ DSQ+ I C+ W+PKW +N +R + + V N + ++ LL +
Sbjct: 178 IERCPFPDIP-LEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRR 236
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMAR 146
G VK+++VP H GN AD +AR
Sbjct: 237 RGAAGRVKFKYVPAHSGVEGNEAADRLAR 265
>gi|385306041|gb|EIF49978.1| ribonuclease h1 [Dekkera bruxellensis AWRI1499]
Length = 282
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 9 VFTDGACPRNGKVGAS-AGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
V+TDGA N S AGYGV+FG N+ NVA + G + +N AEI G A+ + +
Sbjct: 128 VYTDGASKNNQDQSKSVAGYGVFFGHNDSRNVAAPLRGNKQSNQRAEIMGVDTAVDKILT 187
Query: 67 ANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM---- 121
+D+ I +DS + I + +W +W+ NGW+ + GKPV+N++ ++ L++I ++
Sbjct: 188 GGVDKKYNIATDSMYTIHSLTDWGNRWRENGWKGSSGKPVENRDVIEPCLNKIDKLNEXY 247
Query: 122 -----ESVKWEFVPGHGNSHGNMKADEMARD 147
+ ++++ VPGH GN AD++A +
Sbjct: 248 NDKGYDKLEFKXVPGHQGIEGNEMADKLANE 278
>gi|321251952|ref|XP_003192235.1| ribonuclease H [Cryptococcus gattii WM276]
gi|317458703|gb|ADV20448.1| Ribonuclease H, putative [Cryptococcus gattii WM276]
Length = 324
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 8/149 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFG---ENNPLNVAGKVTGRV-TNNNAEIQGAIHA 60
+++VV+TDG+ NG+VG+ AG GV++G E + N A +V G TNN E+ I A
Sbjct: 121 HYLVVYTDGSARGNGQVGSRAGAGVWWGSQGEASKQNWAERVPGEPQTNNRGELLAVIRA 180
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQ 117
+++ +I + ++ DSQ+ I C+ W+PKW +N +R ++ + V N + ++ LL +
Sbjct: 181 IERCPFPDIP-LEVRCDSQYTISCMTIWLPKWMNNNFRNSNRQEVVNIDLIKHLLVLLRR 239
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMAR 146
G VK+++VP H GN AD +AR
Sbjct: 240 RGPAGRVKFKYVPAHSGVEGNEAADRLAR 268
>gi|121701987|ref|XP_001269258.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
gi|119397401|gb|EAW07832.1| reverse transcriptase, RNaseH, putative [Aspergillus clavatus NRRL
1]
Length = 208
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLN--VAGKVTGRVTNNNAEIQGAIHALKQA 64
+VV DGAC NG+ A A GVY+G NN N + T R TN AE+Q + AL
Sbjct: 55 IVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEALGNL 114
Query: 65 KSAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
+ + V IKSDS++M++ + EW P W++ WR G PV N E + +
Sbjct: 115 DDVSCAHPAGDRLSTVVIKSDSEYMVRGITEWFPSWRNQRWRNYRGMPVTNLEYFRMIDE 174
Query: 117 QIGQME----SVKWEFVPGHGNSHGNMKADEMARDA 148
I E SVK+ VP N AD +A+DA
Sbjct: 175 YIEDWEAQGLSVKFWLVP----RSMNRMADGLAKDA 206
>gi|341898717|gb|EGT54652.1| hypothetical protein CAEBREN_25363 [Caenorhabditis brenneri]
Length = 178
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGEN-NPLNVAGKV-TGRVTNNNAEIQGAIHALKQAKS 66
+FTDGA RNG+ A G+ + N N + G + G+ +NN +E QG + +K A S
Sbjct: 10 IFTDGAAFRNGRWDAKGGWAFVYEMNGNLVQRKGHIPFGKQSNNLSEFQGILEGIKHAYS 69
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME---- 122
I + I +DSQ+ I + +W KW+ NGW+ + G V+N+E ++ + + ++
Sbjct: 70 EKIYNITIGTDSQYAINSLTKWFWKWRKNGWKTSYGTDVKNREIIETIRSWMKAIDDQGG 129
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
+V+ + VPGHG + N AD +A+ AA
Sbjct: 130 NVRLKHVPGHGTNELNNLADSLAKKAA 156
>gi|326480360|gb|EGE04370.1| hypothetical protein TEQG_08665 [Trichophyton equinum CBS 127.97]
Length = 243
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 13/157 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQ 63
+ +V+ DGAC NG A AG G+YFG + N++ + TN AE+ AI AL+
Sbjct: 88 DSIVIAVDGACSNNGTPYAQAGLGIYFGSRSSFNISLALDIDEPTNQKAELMAAIGALQM 147
Query: 64 AKSANID--------RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
A+ ++ V IKSDS+++++ EW+PKW++NG+ A GKPV N E + L
Sbjct: 148 ARDICVNGSYGKPIVNVTIKSDSEYLVRAATEWIPKWETNGYTNARGKPVVNGELFKWLD 207
Query: 116 HQIGQM--ESVKWEFVPGHGNSHGNMKADEMARDAAG 150
I + E V F H N AD +A+ A
Sbjct: 208 ACIFDLNAEGVAVHF--WHVERAYNCHADRLAKQAVS 242
>gi|299134143|ref|ZP_07027336.1| Ribonuclease H [Afipia sp. 1NLS2]
gi|298590890|gb|EFI51092.1| Ribonuclease H [Afipia sp. 1NLS2]
Length = 151
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI A
Sbjct: 5 PRPHVVIFTDGACSGNPGPG---GWGAILRFGEIEKEMKGGE--NPTTNNRMELMAAISA 59
Query: 61 LKQAKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
L+ K A++D + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L +
Sbjct: 60 LEALKKPASVD---LTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNAELWQRLDAALK 116
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARD 147
E V+W ++ GH N +AD++ARD
Sbjct: 117 PHE-VRWHWIKGHAGHAENERADQLARD 143
>gi|333900448|ref|YP_004474321.1| ribonuclease H [Pseudomonas fulva 12-X]
gi|333115713|gb|AEF22227.1| Ribonuclease H [Pseudomonas fulva 12-X]
Length = 150
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V ++TDGAC N VG V+ G L VT TNN E+ GAI L
Sbjct: 3 DQVELYTDGACKGNPGVGGWGALLVFQGVEKELWGGEAVT---TNNRMELMGAIRGL--- 56
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A + R C + +DSQ+++K ++EWMP W+ GW+ A +PV+N + Q+L Q+ +
Sbjct: 57 --AELKRPCNVRLVTDSQYVMKGIKEWMPNWKKRGWKTASKEPVKNADLWQQLDEQVNR- 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+V WE+V GH GN +AD++A
Sbjct: 114 HNVTWEWVRGHIGHPGNERADQLA 137
>gi|407920528|gb|EKG13719.1| hypothetical protein MPH_09185 [Macrophomina phaseolina MS6]
Length = 464
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 22/166 (13%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLN----VAGKVTGRVTNNNAEIQGAIHA 60
N V++ DGAC RNG+ A A V+F + +P N +AG + T+ AE+ GAI A
Sbjct: 67 NSVLIAIDGACRRNGRSDAIAACAVFFSKESPYNEAHVLAGDGSTPATSQRAELMGAIKA 126
Query: 61 LKQA-------KSANIDR---VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
L+ A + A ++R + IK+DS +++ EW+ KW GW+ A G PV N++
Sbjct: 127 LEAASRLVDHPEEAGLERPQQIVIKTDSAYLVHGAAEWIAKWTVRGWKTAKGTPVANQDL 186
Query: 111 LQELLHQIGQMES----VKWEFVPGHGNSHGNMKA----DEMARDA 148
Q L +I +E V++ VP N + A DE+AR A
Sbjct: 187 FQRLEDRIQALEHMDIVVQFLRVPRRQNREADAAANRALDELARPA 232
>gi|449300208|gb|EMC96220.1| hypothetical protein BAUCODRAFT_33570 [Baudoinia compniacensis UAMH
10762]
Length = 441
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
V ++TDG+ NG+ A G GVYFG + N++ +TG R TN AE+ AL A
Sbjct: 255 VRIYTDGSSLSNGQASAIGGVGVYFGPQDKRNISEGLTGSRQTNQRAELTAIQRALDVAP 314
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ----- 120
RV I SDS + IKCV EW KW++NGW A GK V+N++ +Q+++ + +
Sbjct: 315 KDR--RVVILSDSNYAIKCVTEWFVKWRANGWVNASGKAVENRDLIQKVIDNLEERYKMN 372
Query: 121 ---------------------------MESVKWEFVPGHGNSHGNMKADEMA 145
+ VK+ +V GH GN AD +A
Sbjct: 373 QHRNVDFAEEDDAVEDDGKPPGPWERGLAGVKFVWVKGHAKDAGNNAADNLA 424
>gi|315056339|ref|XP_003177544.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
gi|311339390|gb|EFQ98592.1| hypothetical protein MGYG_08939 [Arthroderma gypseum CBS 118893]
Length = 198
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY------FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
VV+ DGAC NG+ + A GV+ F E+ PLN+ R TN AEI IH
Sbjct: 26 VVISVDGACRGNGREHSDAAAGVFVDHGSRFNESIPLNL-----DRPTNQKAEILAGIHG 80
Query: 61 LKQAKSAN---IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L +A+ + V IKSDSQ+M+K V EW KW+SNG++ G+PV N+E QEL
Sbjct: 81 LSKAREMDGGPSRHVVIKSDSQYMVKGVNEWSRKWESNGYKTVHGQPVANRELFQELNSA 140
Query: 118 IGQME----SVKWEFVPGHGNSHGNMKADEMARDAAGW 151
+E V ++ VP E RDA W
Sbjct: 141 KKSLEQSGIEVDFQHVP-----------REQNRDADRW 167
>gi|389774773|ref|ZP_10192892.1| ribonuclease H [Rhodanobacter spathiphylli B39]
gi|388438372|gb|EIL95127.1| ribonuclease H [Rhodanobacter spathiphylli B39]
Length = 147
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V FTDGAC G G + + VAG TNN E+ AI AL+
Sbjct: 2 SEVEAFTDGACL--GNPGPGGWAALLRARGSERMVAGGEPA-TTNNRMELMAAIGALETL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
RV + +DS+++++ +++WMPKW++NGWR AD KPV+N++ Q L +G + V
Sbjct: 59 TRPC--RVILTTDSRYVMQGIEQWMPKWRANGWRTADRKPVKNQDLWQRLFDAVGAHQ-V 115
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W++V GH N + D+ AR+ A
Sbjct: 116 RWKWVKGHNGHAENERVDQAAREQA 140
>gi|302666316|ref|XP_003024759.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
gi|291188828|gb|EFE44148.1| hypothetical protein TRV_01108 [Trichophyton verrucosum HKI 0517]
Length = 435
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 16/161 (9%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL---------NVAGKVTG-RVTNNNA 52
P + ++TDG+ RNG A AG GVYFG ++ NV+ + G R TN A
Sbjct: 252 PPGMLKIYTDGSALRNGTSRARAGVGVYFGPDDESLFSSLSSSRNVSEPLAGSRQTNQRA 311
Query: 53 EIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ 112
E+ AL A V I +DS++ I CV W WQ N W + KPV+NK+ +Q
Sbjct: 312 ELTAISRALDIAPKHR--DVTIFTDSKYSIDCVTVWCINWQRNNWVTSTQKPVENKDLIQ 369
Query: 113 ELLHQIGQMESVK----WEFVPGHGNSHGNMKADEMARDAA 149
+L +I + +S+K +E+V GH GN AD +A + A
Sbjct: 370 AILSKIEERKSLKVKTLFEWVKGHNKDAGNEAADRLAVNGA 410
>gi|406863200|gb|EKD16248.1| RNase H domain protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 405
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA- 64
+ V+TDG+ NG+ GA AG GV+FG + NV+ + G TNN AE+ G + AL+ A
Sbjct: 252 IKVYTDGSALGNGRTGAVAGVGVFFGVGDSRNVSEPLEGMPQTNNRAELTGILRALQIAP 311
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-- 122
K +++ I +DS + I CV W W + GW+K+DGK +N + ++ + I + +
Sbjct: 312 KDKDME---IVTDSNYSINCVTVWFRGWAAKGWKKSDGKDAENTDLIKAIRELIDERDEN 368
Query: 123 --SVKWEFVPGHGNSHGNMKADEMA 145
K+ ++ GH + GN AD +A
Sbjct: 369 GKETKFTWIKGHNDDPGNTAADRLA 393
>gi|268533056|ref|XP_002631656.1| C. briggsae CBR-RNH-1.3 protein [Caenorhabditis briggsae]
Length = 161
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAKSA 67
+ TDGA NG+ GA G+GV + L+ +G G TNN E++ A + A
Sbjct: 14 INTDGATSNNGQAGARGGWGVVVESDRNLDRSGSSAYGNQTNNRYELEAIREATRIASQV 73
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ I +DSQ+ + + W W+ NGWR + G+PV+N+E ++++ I + +
Sbjct: 74 PDRHISINTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSG-K 132
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
+ GH N + N +AD +AR AA
Sbjct: 133 HISGHSNDYHNTEADRLARQAA 154
>gi|323650991|ref|YP_004243634.1| ribonuclease H [Bacillus subtilis subsp. natto]
gi|323461631|dbj|BAJ77047.1| ribonuclease H [Bacillus subtilis subsp. natto]
Length = 155
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++ DGA NGK G+G N + VTNN EI+ AI ALKQ K+
Sbjct: 4 VVIYCDGAARNNGKDNNIGGFGAVLRYGNHVKTIKAGFRNVTNNMMEIRAAIEALKQLKT 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
NI V I +DS ++ C+ Q W KW +NGW A KPV+N++ EL+ + Q +
Sbjct: 64 TNIP-VEINTDSAYLCNCMNQGWYKKWMNNGWVTAGKKPVENRQLWIELIELVEQFPFIT 122
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH N AD +A +A
Sbjct: 123 FNKVKGHSGIPDNELADRLANEA 145
>gi|146421522|ref|XP_001486706.1| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 25/163 (15%)
Query: 9 VFTDGACPRNG-KVGASAGYGVYFGENNPLNVA------GKVTGRVTNNNAEIQGAIHAL 61
++ DGAC RNG + GYGV++G + N A K++G TN +E++ HA+
Sbjct: 75 IYIDGACKRNGMALQRKTGYGVFYGNGDVRNAAVSSSNADKLSG--TNQRSELRALYHAI 132
Query: 62 KQA-----KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE------- 109
I +DS+++I+ W KW+SNGWR G+ V N++
Sbjct: 133 INIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVF 192
Query: 110 ---ELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
E+ E L IG + VK E+VPGH +HGN AD++A AA
Sbjct: 193 YLKEINERLANIG-LPPVKIEYVPGHAGNHGNEMADKLANKAA 234
>gi|119512887|ref|ZP_01631952.1| ribonuclease H [Nodularia spumigena CCY9414]
gi|119462469|gb|EAW43441.1| ribonuclease H [Nodularia spumigena CCY9414]
Length = 312
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA-K 65
++TDGAC N G G+GV YF + ++ G TNN E+Q AI AL
Sbjct: 10 IYTDGACTGNPGPG---GWGVVAYFSDGK-IHEMGDAASYTTNNKMEMQAAIAALNFFHA 65
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S + + + +DS+++I CV +W+P W+ GW+KADGKPVQN+E L+ V
Sbjct: 66 SGQAEPITLYTDSEYLINCVTKWLPGWKKRGWKKADGKPVQNQELLEL--LDQLNTRQVN 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHSGNIGNERCDVIARSFA 147
>gi|253689505|ref|YP_003018695.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259494080|sp|C6DC65.1|RNH_PECCP RecName: Full=Ribonuclease H; Short=RNase H
gi|251756083|gb|ACT14159.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 154
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y PL+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKPLSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q SV+W
Sbjct: 61 TECD-VVLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AAG
Sbjct: 119 EWVKGHAGHPENERCDELARAAAG 142
>gi|157833640|pdb|1RBT|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ ADGKPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|320585958|gb|EFW98637.1| ribonuclease [Grosmannia clavigera kw1407]
Length = 974
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 7/146 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAKSA 67
++TDG+ NGK GA AG GV+FG + N++ ++ G TN AE+ + AL+ +
Sbjct: 828 IYTDGSSLGNGKHGALAGIGVFFGHGDKRNISERLKGEPQTNQRAELTAIMRALQAVPVS 887
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----S 123
R I SDS + I CV EW W SNGW+ G PV N++ ++ + I + +
Sbjct: 888 QPVR--IFSDSTYAINCVSEWYKSWASNGWKTRGGDPVMNQDLIRAVRTCIDARDKASTA 945
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH + GN+ AD +A A
Sbjct: 946 TMFRWVKGHSSDSGNVAADLLANQGA 971
>gi|296284546|ref|ZP_06862544.1| ribonuclease H [Citromicrobium bathyomarinum JL354]
Length = 144
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G G+G + TNN E+ AI AL K
Sbjct: 4 VQIFTDGACKGNPGPG---GWGALLRKGKTEKELSGAEPDTTNNRMEMTAAIRALSALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS+++I + +W+P WQ GWR AD KPV+N E+L L ++ SV W
Sbjct: 61 GCT--VDLYTDSKYLIDGITKWLPGWQKRGWRTADKKPVKN-EDLWRQLAELTATHSVTW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +A DAA
Sbjct: 118 HWVRGHSGHAENERVDRLASDAA 140
>gi|190344329|gb|EDK35985.2| hypothetical protein PGUG_00083 [Meyerozyma guilliermondii ATCC
6260]
Length = 243
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 25/163 (15%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENNPLNVA------GKVTGRVTNNNAEIQGAIHAL 61
++ DGAC RNG GYGV++G + N A K++G TN +E++ HA+
Sbjct: 75 IYIDGACKRNGMASQRKTGYGVFYGNGDVRNAAVSSSNADKLSG--TNQRSELRALYHAI 132
Query: 62 KQA-----KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE------- 109
I +DS+++I+ W KW+SNGWR G+ V N++
Sbjct: 133 INIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVF 192
Query: 110 ---ELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
E+ E L IG + VK E+VPGH +HGN AD++A AA
Sbjct: 193 YLKEINERLANIG-LPPVKIEYVPGHAGNHGNEMADKLANKAA 234
>gi|170292440|pdb|2YV0|X Chain X, Structural And Thermodynamic Analyses Of E. Coli
Ribonuclease Hi Variant With Quintuple Thermostabilizing
Mutations
Length = 155
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G A Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYAAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ ADGKPV+N + Q L +GQ + +K
Sbjct: 61 EPC--EVILSTDSQYLRQGITQWIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + E+AR AA
Sbjct: 118 WEWVKGHAGHPENERCHELARAAA 141
>gi|341614699|ref|ZP_08701568.1| ribonuclease H [Citromicrobium sp. JLT1363]
Length = 144
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G G+GV + G TNN E+ AI L K
Sbjct: 4 VQIFTDGACKGNPGPG---GWGVLLRRGDTEKELSGAEGNTTNNRMEMTAAIEGLSALK- 59
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
R C + +DS+++I + +W+P WQ GW+ A KPV+N E+L L +
Sbjct: 60 ----RTCAVDLYTDSKYLIDGITKWLPGWQKRGWKTASKKPVKN-EDLWRRLADLNARHR 114
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V W +V GH N +AD++A DAA
Sbjct: 115 VTWHWVKGHSGHAENERADQLASDAA 140
>gi|189425834|ref|YP_001953011.1| ribonuclease H [Geobacter lovleyi SZ]
gi|189422093|gb|ACD96491.1| Ribonuclease H [Geobacter lovleyi SZ]
Length = 153
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
V +F DGAC N G GYG G+ L+ A T TNN E+ A+ L
Sbjct: 8 TEVEIFCDGACSGNPGPG---GYGTILRCRGKEKELSGAATET---TNNRMELTAALEGL 61
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+Q + RV I +DSQ+++K + EW+P WQ NGW+ + +PV N+ +L E L + +
Sbjct: 62 RQLTRSC--RVTITTDSQYLVKGMTEWLPGWQRNGWKNSKKEPVLNR-DLWEALVEASKP 118
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDA 148
V W++V GH N + D +AR+A
Sbjct: 119 HQVAWQWVRGHAGHAENERCDTLAREA 145
>gi|218531996|ref|YP_002422812.1| ribonuclease H [Methylobacterium extorquens CM4]
gi|218524299|gb|ACK84884.1| Ribonuclease H [Methylobacterium extorquens CM4]
Length = 153
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGAI 58
+P + + DGAC N G GYG N V GR TNN E+ AI
Sbjct: 4 EPTREITIAFDGACRGNPGPG---GYGAIL-INTRTGAEKIVKGREVATTNNRMELSAAI 59
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
L + I V + DSQ++IK + EW+P W++ GW A GKPV NKE Q L +
Sbjct: 60 AGLNAIRPGAI--VAMIGDSQYVIKGITEWLPGWKARGWSGAGGKPVLNKELWQSLEMAV 117
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ +V W +V GH N + DE+A AG
Sbjct: 118 ARHLTVTWTWVRGHAGHELNERVDEIAAAQAG 149
>gi|157833639|pdb|1RBS|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
A V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EAC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|330932415|ref|XP_003303765.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
gi|311320008|gb|EFQ88137.1| hypothetical protein PTT_16115 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 26/167 (15%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP---------LNVAGKVTGRV----- 47
D +VV TDGA NG++GA AG GVYFG +P N++ ++ V
Sbjct: 229 DSRGTIVVSTDGASRGNGQLGARAGVGVYFGPADPRFVHLSTAQTNISDRINRNVSEPLR 288
Query: 48 ----TNNNAEIQGAIHALKQAKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADG 102
TN AE+ AL IDR V I++DS + KC+QEW W+ W + G
Sbjct: 289 GSKQTNQRAELVAIARALDHVP---IDRDVEIRTDSMYSKKCLQEWFYNWEKKNWYNSAG 345
Query: 103 KPVQNKEELQELLHQIGQME----SVKWEFVPGHGNSHGNMKADEMA 145
K V+NK+ +Q ++ +I + E K +V GH GN+ AD +A
Sbjct: 346 KEVENKDLIQPIIARIRERERCRAKTKITWVKGHAIDEGNIAADALA 392
>gi|352085694|ref|ZP_08953285.1| Ribonuclease H [Rhodanobacter sp. 2APBS1]
gi|389798010|ref|ZP_10201038.1| ribonuclease H [Rhodanobacter sp. 116-2]
gi|351681635|gb|EHA64759.1| Ribonuclease H [Rhodanobacter sp. 2APBS1]
gi|388445905|gb|EIM01958.1| ribonuclease H [Rhodanobacter sp. 116-2]
Length = 147
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V FTDGAC N G A G ++ T TNN E+ AI AL+
Sbjct: 2 SEVEAFTDGACLGNPGPGGWAALLRAQGSERMVSGGEPAT---TNNRMELMAAIGALEAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV + +DS+++++ +++WMPKW++NGWR AD KPV+N++ Q L +G + V
Sbjct: 59 KRPC--RVTLTTDSRYVMQGIEQWMPKWRANGWRTADRKPVKNQDLWQRLSDAVGAHQ-V 115
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W++V GH N + D+ AR A
Sbjct: 116 RWKWVKGHNGHIENEQVDQAARKQA 140
>gi|395331595|gb|EJF63976.1| ribonuclease H-like protein, partial [Dichomitus squalens LYAD-421
SS1]
Length = 250
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M PD ++V+TDG+C NG A AG GV++G+ + +V TNN AE+ I
Sbjct: 102 MSPDV-MIVYTDGSCKGNGTEHAVAGVGVWWGDYDSRHVGP----HQTNNRAELIAIIRV 156
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ + + IK+DS++ IKC+ W+ W++ GW+K DGKP++N ++ L + +
Sbjct: 157 LETTPTNR--PLLIKTDSEYSIKCMTRWLWSWKAKGWKKIDGKPIKNLPLVKYLDVLLDE 214
Query: 121 MES-----VKWEFVPGHGNSHGNMKADEMA 145
+ VK+E++ H GN AD +A
Sbjct: 215 RRTVSKQDVKFEWIKAHAGLSGNEDADALA 244
>gi|167627745|ref|YP_001678245.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|189043697|sp|B0TZ91.1|RNH_FRAP2 RecName: Full=Ribonuclease H; Short=RNase H
gi|167597746|gb|ABZ87744.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 152
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G Y G + ++ A K T TNN E+ AI L QA
Sbjct: 8 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEISGAEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + +W+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTTKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWSWVKGHSGNQGNEKADELANKA 145
>gi|255733062|ref|XP_002551454.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131195|gb|EER30756.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 9 VFTDGACPRNGK-VGASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIHA 60
V+ DGA NGK A +GYGVY+G N+P N A + + + TN AE++ HA
Sbjct: 115 VYVDGASRGNGKSANAPSGYGVYWGPNDPRNAAVPLDKVDRGTSFKPTNQRAELRAINHA 174
Query: 61 LKQ----AKSANID-RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
LK KS N + I SDS++ I+ V EW KW +NGW+ + G+PV N+E ++E +
Sbjct: 175 LKDIHNDLKSGNASTKTEIHSDSRYAIRSVDEWSDKWAANGWKNSKGEPVANQELIKETV 234
Query: 116 ---------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+Q V++ V GH + GN AD +A A
Sbjct: 235 ALKNSINKEYQARNWGDVEFVHVKGHSGNPGNEAADRLANQGA 277
>gi|149236507|ref|XP_001524131.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452507|gb|EDK46763.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 321
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 79/159 (49%), Gaps = 22/159 (13%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIHA 60
++TDGA NGK A++GYGVY+G N+P N A + T TN AE+ HA
Sbjct: 150 IYTDGASRGNGKSRTAASGYGVYYGRNDPRNAAVPLSSVDDIHTVAPTNQRAELHAIHHA 209
Query: 61 LKQ-----AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL- 114
LK A + + I SDS++ ++CV EW KW NGW GKPV N + ++E
Sbjct: 210 LKNIKNELATAPTGKQYSIHSDSKYAMQCVDEWSNKWLKNGWTNTAGKPVANADIIKEAV 269
Query: 115 --------LHQIGQMESVKWEFVPGHGNSHGNMKADEMA 145
+HQ + +++ V GH N AD +A
Sbjct: 270 QLKNEINEIHQQRGHQPLQFVHVKGHAGDERNEAADRLA 308
>gi|421618041|ref|ZP_16059022.1| ribonuclease H [Pseudomonas stutzeri KOS6]
gi|409780036|gb|EKN59681.1| ribonuclease H [Pseudomonas stutzeri KOS6]
Length = 151
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V V+TDGAC N G VY G L T TNN E+ AI AL +
Sbjct: 3 DDWVEVYTDGACKGNPGPGGWGALLVYKGVKRELWGGEPDT---TNNRMELMAAIRALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+G+ +
Sbjct: 60 LKRPC--KVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVGRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V WE+V GH GN +AD +A
Sbjct: 117 VSWEWVRGHTGHPGNEQADLLA 138
>gi|451823302|ref|YP_007459576.1| ribonuclease HI [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451776102|gb|AGF47143.1| ribonuclease HI [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 155
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGA 57
++ + +V ++TDGAC N +G G+GV+ P K G TNN E+
Sbjct: 2 VNTNFYVELWTDGACKGNPGIG---GWGVFLRW--PDGSEDKFYGGENNTTNNRMELLAV 56
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I+ALK + V + +DSQ+++ + +W+ W+ GWR + G V+NK +L E+LH
Sbjct: 57 INALKSINYYEYNNVKLYTDSQYVMNGITKWIDNWKKRGWRTSSGGMVKNK-DLWEILHA 115
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ ++ W ++ GH +++GN ADE+A
Sbjct: 116 LVNFYNISWNWIKGHSSNYGNNIADELA 143
>gi|429462936|ref|YP_007184399.1| RNAse H [Candidatus Kinetoplastibacterium crithidii (ex Angomonas
deanei ATCC 30255)]
gi|451811718|ref|YP_007448173.1| ribonuclease HI [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|429338450|gb|AFZ82873.1| RNAse H [Candidatus Kinetoplastibacterium crithidii (ex Angomonas
deanei ATCC 30255)]
gi|451776876|gb|AGF47875.1| ribonuclease HI [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 150
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+V ++TDGAC N +G G V + + N+ G + + TNN E+ I+ LK+
Sbjct: 7 YVELWTDGACKGNPGIGG-WGVVVKWPDGREDNIYGGES-KTTNNRMELLAVINGLKKLG 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S+N + I +DSQ+++ + +W+ W+ GW+ ++GK V+NK +L E L ++ + ++
Sbjct: 65 SSNYLDIVIYTDSQYVMNGITKWINGWKHKGWKLSNGKDVKNK-DLWESLDKLSENYNIN 123
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH +++GN KAD++A
Sbjct: 124 WNWVKGHSDNYGNNKADKLA 143
>gi|238883080|gb|EEQ46718.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 20/157 (12%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 290 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 349
Query: 63 QAKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---L 114
+ D + I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L
Sbjct: 350 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 409
Query: 115 LHQIGQME------SVKWEFVPGHGNSHGNMKADEMA 145
I + S+++ V GH GN +AD +A
Sbjct: 410 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLA 446
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-----GRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
Query: 63 QA-----KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE------EL 111
+ + I SDS + IKC+ +W KW NGW G+ + N + EL
Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176
Query: 112 QELLHQ------IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
E ++ G+++ + V GH + GN +AD +A AA
Sbjct: 177 YEWINDEYDDRGWGELDLIH---VKGHSGNDGNEEADNLANLAA 217
>gi|68473603|ref|XP_719126.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
gi|46440930|gb|EAL00231.1| hypothetical protein CaO19.5564 [Candida albicans SC5314]
Length = 232
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 20/157 (12%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 63 QAKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---L 114
+ D + I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 115 LHQIGQME------SVKWEFVPGHGNSHGNMKADEMA 145
I + S+++ V GH GN +AD +A
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGMEGNEEADRLA 213
>gi|160286373|pdb|2Z1G|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105K)
Length = 155
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + + R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYE---RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS ++ K + EW+ W+ GW+KAD KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|68473370|ref|XP_719243.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
gi|46441053|gb|EAL00353.1| hypothetical protein CaO19.13010 [Candida albicans SC5314]
Length = 232
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 20/157 (12%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG------RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ + R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 63 QAKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---L 114
+ D + I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 115 LHQIGQME------SVKWEFVPGHGNSHGNMKADEMA 145
I + S+++ V GH GN +AD +A
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLA 213
>gi|414163942|ref|ZP_11420189.1| ribonuclease H [Afipia felis ATCC 53690]
gi|410881722|gb|EKS29562.1| ribonuclease H [Afipia felis ATCC 53690]
Length = 151
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P HV +FTDGAC N G G+G + FGE G+ TNN E+ AI A
Sbjct: 5 PRPHVTIFTDGACSGNPGPG---GWGAILRFGEVEKELKGGENPS--TNNRMELMAAISA 59
Query: 61 LKQAKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
L+ K A++D + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L +
Sbjct: 60 LEALKKPASVD---LTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNAELWQRLDAAL- 115
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARD 147
+ +V+W ++ GH N +AD++ARD
Sbjct: 116 KPHAVRWHWIKGHAGHVENERADQLARD 143
>gi|315056341|ref|XP_003177545.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
gi|311339391|gb|EFQ98593.1| hypothetical protein MGYG_08940 [Arthroderma gypseum CBS 118893]
Length = 220
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAK 65
+++ DGAC NG + A GVY G+ + N + ++ TN AE+ I+ L A+
Sbjct: 67 IIIAVDGACSENGMETSRAAIGVYVGKKSDYNASMRLDSSWATNQKAELAAGIYGLDAAR 126
Query: 66 SAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
N + V IK+DS +M+ + +W+ +W++NG+ ADG+PV N +EL +
Sbjct: 127 EINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQPVTNHYLFKELAWR 186
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
I + S + H N +AD++AR A
Sbjct: 187 IRDLASSRVNVYFWHVRREHNHEADQLARAA 217
>gi|50543514|ref|XP_499923.1| YALI0A09878p [Yarrowia lipolytica]
gi|49645788|emb|CAG83850.1| YALI0A09878p [Yarrowia lipolytica CLIB122]
Length = 276
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALK 62
D+ + V+TDGA N A AGYG++FG + NV+ + G + TN AE+ A K
Sbjct: 126 DHPIPVYTDGASRNNQSSNAKAGYGIFFGNGSEDNVSKPLAGMQQTNQRAELTAIYEACK 185
Query: 63 QAKSANIDRVC-IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEEL---QELLHQI 118
K N R I++DSQ+ I C++EW W+ NGW+ + G V N++ + + LL +
Sbjct: 186 IIKDRNDRRYYDIRTDSQYSISCLKEWGMNWERNGWKNSKGADVSNQDIIKPARNLLISL 245
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
G + V+ V GH + GN AD +A
Sbjct: 246 G--DRVRLTKVKGHSSDPGNDAADALA 270
>gi|82701057|ref|YP_418157.1| putative Ribonuclease HI [Pseudomonas phage EL]
gi|82657962|emb|CAG27218.1| putative Ribonuclease HI [Pseudomonas phage EL]
Length = 163
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++ V++TDG+ N G Y Y GE L+ K + TNN E+ I AL++
Sbjct: 7 NDRYVIYTDGSALGNPGPGGYGVYAKYKGEEFSLS---KGYYKTTNNRQELMSVIAALEE 63
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKAD-GKPVQNKEELQELLHQIGQME 122
NI +V I +DSQ++IKC +WM W N W + G+PV+N+ +L E+L+++ +
Sbjct: 64 F-GPNI-KVDIFTDSQYVIKCATKWMRGWIRNNWMGYNSGQPVKNR-DLLEVLNELLKKN 120
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
VK+ +V GH GN KAD++A+DAA
Sbjct: 121 KVKFHWVKGHSGDEGNEKADQLAKDAA 147
>gi|432107368|gb|ELK32771.1| Ribonuclease H1 [Myotis davidii]
Length = 228
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+VVV+TDG C NG+ A AG A A++QA+
Sbjct: 108 YVVVYTDGCCSSNGRRRARAG---------------------------THAACKAIEQAR 140
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++
Sbjct: 141 AQNITKLVLYTDSMFTIHGITSWVQGWKENGWRTSAGKAVTNKEDFME-LDRLVQGVDIQ 199
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W VPGH GN +AD +AR+ A
Sbjct: 200 WMHVPGHSGFAGNEEADRLAREGA 223
>gi|420334474|ref|ZP_14836096.1| ribonuclease HI [Shigella flexneri K-315]
gi|391268165|gb|EIQ27093.1| ribonuclease HI [Shigella flexneri K-315]
Length = 155
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGAGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|414169880|ref|ZP_11425613.1| ribonuclease H [Afipia clevelandensis ATCC 49720]
gi|410885612|gb|EKS33427.1| ribonuclease H [Afipia clevelandensis ATCC 49720]
Length = 149
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC RN G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSRNPGPG---GWGAILRFGDVEKELKGGENPS--TNNRMELMAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ + + +W+ W+ NGW+ AD KPV+N + Q L + + +
Sbjct: 63 LKKPAL--VDLTTDSQYVRQGITQWIHNWKRNGWKTADKKPVKNADLWQRLDAALKEHD- 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++ARD
Sbjct: 120 VRWHWIKGHAGHAENERADQLARD 143
>gi|254876846|ref|ZP_05249556.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842867|gb|EET21281.1| ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 160
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G Y G + + A K T TNN E+ AI L QA
Sbjct: 16 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGAEKDT---TNNRMELMAAIKTL-QA 71
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + +W+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 72 LKRKCD-ITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTTKHNV 129
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 130 TWSWVKGHSGNQGNEKADELANKA 153
>gi|157831220|pdb|1GOB|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 155
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQAITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|388857853|emb|CCF48518.1| related to Ribonuclease H [Ustilago hordei]
Length = 328
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG---RVTNNNAEIQGAIHAL 61
+V+ DG+C NGK A AGYGVYF +++ L+ + ++ G + TNN AE+ I A+
Sbjct: 119 TIVYVDGSCLHNGKFSARAGYGVYFPDSSLSHLSESRRLPGPPKQQTNNRAELTAIIRAI 178
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI-GQ 120
Q + R+ I SDS++ + CV +W+ KW+ NGW+ GK V+NK+ + +L ++ +
Sbjct: 179 -QLCPDDDSRLEIYSDSKYSMSCVNDWIHKWKKNGWKTQMGKEVENKDLIVKLDEEMERR 237
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +V H GN D+MA+ A
Sbjct: 238 VPRPILIYVYAHAGIEGNEVVDKMAKLGA 266
>gi|386617715|ref|YP_006137295.1| Ribonuclease HI [Escherichia coli NA114]
gi|387828277|ref|YP_003348214.1| ribonuclease H [Escherichia coli SE15]
gi|432420334|ref|ZP_19662892.1| ribonuclease H [Escherichia coli KTE178]
gi|432498510|ref|ZP_19740290.1| ribonuclease H [Escherichia coli KTE216]
gi|432557241|ref|ZP_19793934.1| ribonuclease H [Escherichia coli KTE49]
gi|432693050|ref|ZP_19928265.1| ribonuclease H [Escherichia coli KTE162]
gi|432709055|ref|ZP_19944124.1| ribonuclease H [Escherichia coli KTE6]
gi|432917214|ref|ZP_20121868.1| ribonuclease HI [Escherichia coli KTE173]
gi|432924492|ref|ZP_20126779.1| ribonuclease H [Escherichia coli KTE175]
gi|432979769|ref|ZP_20168550.1| ribonuclease H [Escherichia coli KTE211]
gi|433095124|ref|ZP_20281342.1| ribonuclease H [Escherichia coli KTE139]
gi|433104401|ref|ZP_20290424.1| ribonuclease H [Escherichia coli KTE148]
gi|281177434|dbj|BAI53764.1| ribonuclease H [Escherichia coli SE15]
gi|333968216|gb|AEG35021.1| Ribonuclease HI [Escherichia coli NA114]
gi|430947499|gb|ELC67196.1| ribonuclease H [Escherichia coli KTE178]
gi|431032104|gb|ELD44815.1| ribonuclease H [Escherichia coli KTE216]
gi|431094294|gb|ELD99925.1| ribonuclease H [Escherichia coli KTE49]
gi|431237192|gb|ELF32192.1| ribonuclease H [Escherichia coli KTE162]
gi|431252776|gb|ELF46290.1| ribonuclease H [Escherichia coli KTE6]
gi|431447866|gb|ELH28586.1| ribonuclease HI [Escherichia coli KTE173]
gi|431450133|gb|ELH30625.1| ribonuclease H [Escherichia coli KTE175]
gi|431496390|gb|ELH75973.1| ribonuclease H [Escherichia coli KTE211]
gi|431620002|gb|ELI88890.1| ribonuclease H [Escherichia coli KTE139]
gi|431634425|gb|ELJ02666.1| ribonuclease H [Escherichia coli KTE148]
Length = 155
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--KVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|157831759|pdb|1LAV|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYLRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|328766726|gb|EGF76779.1| hypothetical protein BATDEDRAFT_28244 [Batrachochytrium
dendrobatidis JAM81]
Length = 206
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSA 67
V+TDG C NG GA A G++FG + N++ ++ + TNN AE+ I AL+ S
Sbjct: 63 VYTDGGCRANGTKGAQASIGIWFGHADSRNISERLISPIQTNNRAEMTAVIRALQATTSY 122
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVKW 126
+ V I SDS ++ + + WMP W+ NGW+ KPVQN++ QEL + +VK
Sbjct: 123 H--HVNIYSDSAYVERGLNAWMPVWKQNGWKGPRNKPVQNQDLWQELDQCMNDRSGTVKI 180
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V H GN A+ +A A
Sbjct: 181 LWVKAHVGILGNEGANTLASQA 202
>gi|157833642|pdb|1RBV|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|344339638|ref|ZP_08770566.1| Ribonuclease H [Thiocapsa marina 5811]
gi|343800374|gb|EGV18320.1| Ribonuclease H [Thiocapsa marina 5811]
Length = 143
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 11/147 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +TDGAC N G G+GV +GE G+ TNN E+ I AL+
Sbjct: 5 VRAYTDGACKGNPGPG---GWGVLLRWGEVEKELCGGERA--TTNNRMELMAVIMALEAM 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + I +DSQ++ + V+EWMP+W+ NGWR AD KPV+N++ + L IG + V
Sbjct: 60 KRPTF--LEIVTDSQYVKRGVEEWMPRWKRNGWRTADRKPVKNRDLWERLDSAIGAHQ-V 116
Query: 125 KWEFVPGHGNSHGNMKADEMA-RDAAG 150
+W++V GH N +AD +A R AG
Sbjct: 117 RWKWVKGHAGHAENERADRLANRGVAG 143
>gi|342890532|gb|EGU89335.1| hypothetical protein FOXB_00144 [Fusarium oxysporum Fo5176]
Length = 222
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQ 63
+ + + DGAC NG+ A A GV+FG + N + +T VTN AE+ I ALKQ
Sbjct: 66 DSIFIAVDGACRGNGQANAKAAVGVFFGRRSTYNQSVLLTEPHVTNQIAELSAGILALKQ 125
Query: 64 AKSA---------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
AK + + IK+DS +++K + EW+ KW++NG++ A K V+N + QEL
Sbjct: 126 AKDIVRTKALGDEPLHTIVIKADSDYLVKGMTEWVFKWETNGYKTAKRKLVENAKLFQEL 185
Query: 115 LHQIGQM-----ESVKWEFVPGHGNSHGNMKADEMARD 147
+G + E + W VP N + A++ RD
Sbjct: 186 RELVGDLNRSNVEVLFWR-VPREMNKEADKLANQAFRD 222
>gi|387824369|ref|YP_005823840.1| Ribonuclease HI [Francisella cf. novicida 3523]
gi|328675968|gb|AEB28643.1| Ribonuclease HI [Francisella cf. novicida 3523]
Length = 152
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L+
Sbjct: 8 NSVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTLQAL 64
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + I +DS+++ + EW+ W++NGWR A K V+NK+ QE L + +V
Sbjct: 65 KRKC--NITIYTDSKYLQNGINEWLANWKANGWRTAAKKEVKNKDLWQE-LDSLTSKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWSWVRGHSGNIGNEKADELANKA 145
>gi|332254936|ref|XP_003276592.1| PREDICTED: ribonuclease H1 [Nomascus leucogenys]
Length = 258
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 31/145 (21%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 140 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 199
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I NG +L L+ + M
Sbjct: 200 KTQNINKLVLYTDSMFTI------------NG-------------KLSHLISSVFPMH-- 232
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 233 ----VPGHSGFIGNEEADRLAREGA 253
>gi|209886441|ref|YP_002290298.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
gi|337740024|ref|YP_004631752.1| ribonuclease H [Oligotropha carboxidovorans OM5]
gi|386029041|ref|YP_005949816.1| ribonuclease H [Oligotropha carboxidovorans OM4]
gi|229564314|sp|B6JJ39.1|RNH_OLICO RecName: Full=Ribonuclease H; Short=RNase H
gi|209874637|gb|ACI94433.1| ribonuclease HI [Oligotropha carboxidovorans OM5]
gi|336094109|gb|AEI01935.1| ribonuclease H [Oligotropha carboxidovorans OM4]
gi|336097688|gb|AEI05511.1| ribonuclease H [Oligotropha carboxidovorans OM5]
Length = 149
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVVIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGE--NPTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + I V + +DSQ++ + + W+ W+ NGWR +D KPV+N + Q L + E
Sbjct: 63 LKRSAI--VDLTTDSQYVRQGITSWIFNWKKNGWRTSDKKPVKNVDLWQRLDAALKPHE- 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +ADE+AR+
Sbjct: 120 VRWHWIKGHAGHAENERADELARE 143
>gi|254491285|ref|ZP_05104466.1| RNase H [Methylophaga thiooxidans DMS010]
gi|224463798|gb|EEF80066.1| RNase H [Methylophaga thiooxydans DMS010]
Length = 145
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+HV +FTDGAC N G G+G + + TNN E+ I AL+
Sbjct: 2 DHVEIFTDGACSGNPGPG---GWGAILRSSGTEKELSGSEKQTTNNRMEMMAVIVALEAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV I +DSQ++IK + EW+P W++ W+ A KPV+N E Q L + I Q E V
Sbjct: 59 KRPC--RVTITTDSQYVIKGMTEWLPGWKAKNWKTAAKKPVKNVELWQRLDNAINQHE-V 115
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
+W++V GH N +AD++A A
Sbjct: 116 EWQWVRGHQGHVENERADQLAVRA 139
>gi|157833638|pdb|1RBR|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EPC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|110804262|ref|YP_687781.1| ribonuclease H [Shigella flexneri 5 str. 8401]
gi|424836729|ref|ZP_18261366.1| ribonuclease H [Shigella flexneri 5a str. M90T]
gi|110613810|gb|ABF02477.1| RNase HI [Shigella flexneri 5 str. 8401]
gi|383465781|gb|EID60802.1| ribonuclease H [Shigella flexneri 5a str. M90T]
Length = 192
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 41 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 97
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 98 EHC--EVILSTDSQYVRQGITQWLHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 154
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 155 WEWVKGHAGHPENERCDELARAAA 178
>gi|241956750|ref|XP_002421095.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644438|emb|CAX41253.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 266
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 98 VYVDGAARGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 157
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
LK Q+ A R I SDS++ I+ + EW W NGW+ + G+PV NK+ +QE
Sbjct: 158 LKNIHNDLQSGKA-TGRTEIHSDSKYAIQSINEWSSNWAKNGWKNSKGEPVANKDLIQET 216
Query: 115 L---------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +Q ++K+ V GH GN AD +A A
Sbjct: 217 VALKNNINKTYQDKNWGNLKFVHVKGHAGDPGNEAADRLANQGA 260
>gi|293603367|ref|ZP_06685795.1| ribonuclease HI [Achromobacter piechaudii ATCC 43553]
gi|292818277|gb|EFF77330.1| ribonuclease HI [Achromobacter piechaudii ATCC 43553]
Length = 153
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V ++TDGAC N G G+GV G++ G++ + TNN E+ I L
Sbjct: 8 DQKVEMWTDGACKGNPGPG---GWGVLLRAGDHEKTLHGGEL--QTTNNRMELMAVIQGL 62
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K A + V I +DSQ+++K + EW+ W+ GW A+ KPV+N E Q L Q+ Q
Sbjct: 63 RALKRACV--VTIHTDSQYVMKGMTEWLANWKRRGWVTAEKKPVKNAELWQALDEQV-QR 119
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN +AD++A
Sbjct: 120 HQVSWRWVRGHAGDEGNERADQLA 143
>gi|157159675|ref|YP_001456993.1| ribonuclease H [Escherichia coli HS]
gi|193063213|ref|ZP_03044304.1| ribonuclease H [Escherichia coli E22]
gi|194427582|ref|ZP_03060130.1| ribonuclease H [Escherichia coli B171]
gi|218693676|ref|YP_002401343.1| ribonuclease H [Escherichia coli 55989]
gi|260842440|ref|YP_003220218.1| ribonuclease HI [Escherichia coli O103:H2 str. 12009]
gi|407467665|ref|YP_006785893.1| ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483618|ref|YP_006780767.1| ribonuclease H [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484158|ref|YP_006771704.1| ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2050]
gi|415801849|ref|ZP_11499772.1| ribonuclease H [Escherichia coli E128010]
gi|416342457|ref|ZP_11676688.1| Ribonuclease HI [Escherichia coli EC4100B]
gi|417168677|ref|ZP_12001128.1| ribonuclease HI [Escherichia coli 99.0741]
gi|417174667|ref|ZP_12004463.1| ribonuclease HI [Escherichia coli 3.2608]
gi|417182058|ref|ZP_12008894.1| ribonuclease HI [Escherichia coli 93.0624]
gi|417247048|ref|ZP_12040149.1| ribonuclease HI [Escherichia coli 9.0111]
gi|417253364|ref|ZP_12045123.1| ribonuclease HI [Escherichia coli 4.0967]
gi|417595060|ref|ZP_12245736.1| ribonuclease H [Escherichia coli 3030-1]
gi|417621444|ref|ZP_12271774.1| ribonuclease H [Escherichia coli STEC_H.1.8]
gi|417803555|ref|ZP_12450593.1| ribonuclease H [Escherichia coli O104:H4 str. LB226692]
gi|417831319|ref|ZP_12477844.1| ribonuclease H [Escherichia coli O104:H4 str. 01-09591]
gi|417868378|ref|ZP_12513406.1| hypothetical protein C22711_5299 [Escherichia coli O104:H4 str.
C227-11]
gi|419276318|ref|ZP_13818588.1| ribonuclease HI [Escherichia coli DEC10E]
gi|419290573|ref|ZP_13832662.1| ribonuclease HI [Escherichia coli DEC11A]
gi|419293021|ref|ZP_13835082.1| ribonuclease HI [Escherichia coli DEC11B]
gi|419298402|ref|ZP_13840426.1| ribonuclease HI [Escherichia coli DEC11C]
gi|419304721|ref|ZP_13846637.1| ribonuclease HI [Escherichia coli DEC11D]
gi|419309778|ref|ZP_13851655.1| ribonuclease HI [Escherichia coli DEC11E]
gi|419315055|ref|ZP_13856888.1| ribonuclease HI [Escherichia coli DEC12A]
gi|419320857|ref|ZP_13862601.1| ribonuclease HI [Escherichia coli DEC12B]
gi|419327056|ref|ZP_13868692.1| ribonuclease HI [Escherichia coli DEC12C]
gi|419332472|ref|ZP_13874038.1| ribonuclease HI [Escherichia coli DEC12D]
gi|419339460|ref|ZP_13880937.1| ribonuclease HI [Escherichia coli DEC12E]
gi|419343869|ref|ZP_13885254.1| ribonuclease HI [Escherichia coli DEC13A]
gi|419348301|ref|ZP_13889655.1| ribonuclease HI [Escherichia coli DEC13B]
gi|419353204|ref|ZP_13894491.1| ribonuclease HI [Escherichia coli DEC13C]
gi|419358548|ref|ZP_13899779.1| ribonuclease HI [Escherichia coli DEC13D]
gi|419363534|ref|ZP_13904717.1| ribonuclease HI [Escherichia coli DEC13E]
gi|419373649|ref|ZP_13914710.1| ribonuclease HI [Escherichia coli DEC14B]
gi|419379078|ref|ZP_13920059.1| ribonuclease HI [Escherichia coli DEC14C]
gi|419384332|ref|ZP_13925239.1| ribonuclease HI [Escherichia coli DEC14D]
gi|419871698|ref|ZP_14393749.1| ribonuclease H [Escherichia coli O103:H2 str. CVM9450]
gi|419927811|ref|ZP_14445538.1| ribonuclease H [Escherichia coli 541-1]
gi|420389543|ref|ZP_14888816.1| ribonuclease HI [Escherichia coli EPEC C342-62]
gi|422990913|ref|ZP_16981684.1| ribonuclease H [Escherichia coli O104:H4 str. C227-11]
gi|422992853|ref|ZP_16983617.1| ribonuclease H [Escherichia coli O104:H4 str. C236-11]
gi|422998062|ref|ZP_16988818.1| ribonuclease H [Escherichia coli O104:H4 str. 09-7901]
gi|423006547|ref|ZP_16997290.1| ribonuclease H [Escherichia coli O104:H4 str. 04-8351]
gi|423008168|ref|ZP_16998906.1| ribonuclease H [Escherichia coli O104:H4 str. 11-3677]
gi|423022354|ref|ZP_17013057.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4404]
gi|423027509|ref|ZP_17018202.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4522]
gi|423033346|ref|ZP_17024030.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4623]
gi|423036212|ref|ZP_17026886.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041332|ref|ZP_17031999.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048018|ref|ZP_17038675.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423051602|ref|ZP_17040410.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058567|ref|ZP_17047363.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429722412|ref|ZP_19257310.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774491|ref|ZP_19306494.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02030]
gi|429779753|ref|ZP_19311707.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783806|ref|ZP_19315719.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02092]
gi|429789144|ref|ZP_19321019.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02093]
gi|429795374|ref|ZP_19327200.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02281]
gi|429801300|ref|ZP_19333078.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02318]
gi|429804932|ref|ZP_19336679.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02913]
gi|429809743|ref|ZP_19341445.1| ribonuclease H [Escherichia coli O104:H4 str. 11-03439]
gi|429815503|ref|ZP_19347162.1| ribonuclease H [Escherichia coli O104:H4 str. 11-04080]
gi|429821091|ref|ZP_19352704.1| ribonuclease H [Escherichia coli O104:H4 str. 11-03943]
gi|429906764|ref|ZP_19372733.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910960|ref|ZP_19376916.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916799|ref|ZP_19382739.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921837|ref|ZP_19387758.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927655|ref|ZP_19393561.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931587|ref|ZP_19397482.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4987]
gi|429938129|ref|ZP_19404010.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938843|ref|ZP_19404717.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946486|ref|ZP_19412341.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949134|ref|ZP_19414982.1| ribonuclease H [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957401|ref|ZP_19423230.1| ribonuclease H [Escherichia coli O104:H4 str. Ec12-0466]
gi|432763494|ref|ZP_19997950.1| ribonuclease H [Escherichia coli KTE48]
gi|432812362|ref|ZP_20046211.1| ribonuclease H [Escherichia coli KTE101]
gi|189043688|sp|A7ZWF6.1|RNH_ECOHS RecName: Full=Ribonuclease H; Short=RNase H
gi|254808025|sp|B7LHC0.1|RNH_ECO55 RecName: Full=Ribonuclease H; Short=RNase H
gi|157065355|gb|ABV04610.1| ribonuclease H [Escherichia coli HS]
gi|192931121|gb|EDV83724.1| ribonuclease H [Escherichia coli E22]
gi|194414352|gb|EDX30626.1| ribonuclease H [Escherichia coli B171]
gi|218350408|emb|CAU96093.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
55989]
gi|257757587|dbj|BAI29084.1| ribonuclease HI [Escherichia coli O103:H2 str. 12009]
gi|320201191|gb|EFW75774.1| Ribonuclease HI [Escherichia coli EC4100B]
gi|323160257|gb|EFZ46214.1| ribonuclease H [Escherichia coli E128010]
gi|340736006|gb|EGR65059.1| ribonuclease H [Escherichia coli O104:H4 str. 01-09591]
gi|340741831|gb|EGR75974.1| ribonuclease H [Escherichia coli O104:H4 str. LB226692]
gi|341921667|gb|EGT71264.1| hypothetical protein C22711_5299 [Escherichia coli O104:H4 str.
C227-11]
gi|345363272|gb|EGW95415.1| ribonuclease H [Escherichia coli 3030-1]
gi|345386892|gb|EGX16724.1| ribonuclease H [Escherichia coli STEC_H.1.8]
gi|354858046|gb|EHF18497.1| ribonuclease H [Escherichia coli O104:H4 str. 04-8351]
gi|354859899|gb|EHF20346.1| ribonuclease H [Escherichia coli O104:H4 str. C227-11]
gi|354866596|gb|EHF27019.1| ribonuclease H [Escherichia coli O104:H4 str. C236-11]
gi|354876930|gb|EHF37290.1| ribonuclease H [Escherichia coli O104:H4 str. 09-7901]
gi|354880938|gb|EHF41272.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4404]
gi|354883826|gb|EHF44140.1| ribonuclease H [Escherichia coli O104:H4 str. 11-3677]
gi|354885627|gb|EHF45919.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4522]
gi|354888694|gb|EHF48948.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4623]
gi|354901295|gb|EHF61422.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905526|gb|EHF65609.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908033|gb|EHF68089.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918505|gb|EHF78461.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354922193|gb|EHF82108.1| ribonuclease H [Escherichia coli O104:H4 str. 11-4632 C4]
gi|378128347|gb|EHW89729.1| ribonuclease HI [Escherichia coli DEC11A]
gi|378134507|gb|EHW95828.1| ribonuclease HI [Escherichia coli DEC10E]
gi|378147132|gb|EHX08280.1| ribonuclease HI [Escherichia coli DEC11B]
gi|378153696|gb|EHX14777.1| ribonuclease HI [Escherichia coli DEC11D]
gi|378157397|gb|EHX18429.1| ribonuclease HI [Escherichia coli DEC11C]
gi|378161501|gb|EHX22477.1| ribonuclease HI [Escherichia coli DEC11E]
gi|378175888|gb|EHX36699.1| ribonuclease HI [Escherichia coli DEC12B]
gi|378176552|gb|EHX37358.1| ribonuclease HI [Escherichia coli DEC12A]
gi|378177459|gb|EHX38253.1| ribonuclease HI [Escherichia coli DEC12C]
gi|378190738|gb|EHX51319.1| ribonuclease HI [Escherichia coli DEC13A]
gi|378190926|gb|EHX51502.1| ribonuclease HI [Escherichia coli DEC12E]
gi|378192107|gb|EHX52673.1| ribonuclease HI [Escherichia coli DEC12D]
gi|378205526|gb|EHX65939.1| ribonuclease HI [Escherichia coli DEC13B]
gi|378208113|gb|EHX68497.1| ribonuclease HI [Escherichia coli DEC13D]
gi|378209456|gb|EHX69827.1| ribonuclease HI [Escherichia coli DEC13C]
gi|378220201|gb|EHX80465.1| ribonuclease HI [Escherichia coli DEC13E]
gi|378227204|gb|EHX87377.1| ribonuclease HI [Escherichia coli DEC14B]
gi|378234223|gb|EHX94301.1| ribonuclease HI [Escherichia coli DEC14C]
gi|378237683|gb|EHX97705.1| ribonuclease HI [Escherichia coli DEC14D]
gi|386170725|gb|EIH42778.1| ribonuclease HI [Escherichia coli 99.0741]
gi|386177359|gb|EIH54838.1| ribonuclease HI [Escherichia coli 3.2608]
gi|386185047|gb|EIH67783.1| ribonuclease HI [Escherichia coli 93.0624]
gi|386209676|gb|EII20163.1| ribonuclease HI [Escherichia coli 9.0111]
gi|386217295|gb|EII33784.1| ribonuclease HI [Escherichia coli 4.0967]
gi|388336596|gb|EIL03134.1| ribonuclease H [Escherichia coli O103:H2 str. CVM9450]
gi|388406697|gb|EIL67088.1| ribonuclease H [Escherichia coli 541-1]
gi|391315088|gb|EIQ72621.1| ribonuclease HI [Escherichia coli EPEC C342-62]
gi|406779320|gb|AFS58744.1| ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055915|gb|AFS75966.1| ribonuclease H [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063700|gb|AFS84747.1| ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429351307|gb|EKY88027.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02030]
gi|429352569|gb|EKY89282.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352768|gb|EKY89477.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02092]
gi|429366681|gb|EKZ03282.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02093]
gi|429367592|gb|EKZ04184.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02281]
gi|429370087|gb|EKZ06653.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02318]
gi|429382474|gb|EKZ18938.1| ribonuclease H [Escherichia coli O104:H4 str. 11-02913]
gi|429384707|gb|EKZ21161.1| ribonuclease H [Escherichia coli O104:H4 str. 11-03943]
gi|429385230|gb|EKZ21683.1| ribonuclease H [Escherichia coli O104:H4 str. 11-03439]
gi|429396923|gb|EKZ33270.1| ribonuclease H [Escherichia coli O104:H4 str. 11-04080]
gi|429399169|gb|EKZ35490.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9450]
gi|429399458|gb|EKZ35778.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410213|gb|EKZ46435.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4984]
gi|429412113|gb|EKZ48310.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4986]
gi|429419098|gb|EKZ55236.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4987]
gi|429422878|gb|EKZ58988.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-4988]
gi|429427657|gb|EKZ63737.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-5603]
gi|429435325|gb|EKZ71343.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-5604]
gi|429440888|gb|EKZ76864.1| ribonuclease H [Escherichia coli O104:H4 str. Ec12-0465]
gi|429444466|gb|EKZ80411.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450770|gb|EKZ86662.1| ribonuclease H [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456260|gb|EKZ92105.1| ribonuclease H [Escherichia coli O104:H4 str. Ec11-9941]
gi|431313803|gb|ELG01760.1| ribonuclease H [Escherichia coli KTE48]
gi|431357254|gb|ELG43921.1| ribonuclease H [Escherichia coli KTE101]
Length = 155
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHSWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|88813348|ref|ZP_01128586.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
gi|88789406|gb|EAR20535.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
Length = 147
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G Y G L G T + TNN E+ AI AL+ K
Sbjct: 4 VEIYTDGACRGNPGPGGWGAVLRYGGHEKSL--CGGAT-QTTNNRMELTAAIQALESLKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ + + EW+P W+ GWR A+ KPV+N +L + L + V W
Sbjct: 61 PC--RVVLTTDSQYLRRGITEWLPNWKRRGWRTAERKPVKNA-DLWQRLDMLAARHEVDW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 RWVRGHNGHPGNEQADRLA 136
>gi|157831760|pdb|1LAW|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYIRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|338972940|ref|ZP_08628311.1| ribonuclease HI [Bradyrhizobiaceae bacterium SG-6C]
gi|338234101|gb|EGP09220.1| ribonuclease HI [Bradyrhizobiaceae bacterium SG-6C]
Length = 149
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGDVEKELKGGENPS--TNNRMELMAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ + + +W+ W+ NGWR AD KPV+N + Q L + + E
Sbjct: 63 LKKPAL--VDLTTDSQYVRQGITQWIHNWKRNGWRTADKKPVKNADLWQRLDAALKEHE- 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++ARD
Sbjct: 120 VRWHWIKGHAGHAENERADQLARD 143
>gi|417688022|ref|ZP_12337272.1| ribonuclease H [Shigella boydii 5216-82]
gi|332095032|gb|EGJ00067.1| ribonuclease H [Shigella boydii 5216-82]
Length = 155
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPKNERCDELARAAA 141
>gi|71024413|ref|XP_762436.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
gi|46097685|gb|EAK82918.1| hypothetical protein UM06289.1 [Ustilago maydis 521]
Length = 1122
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG--ENNPLNVAGKVTG-RVTNNNAEIQGAIH 59
P V+ DG+ NG+ A AG+GV+F E + LN + ++ G + TNN AE+ I
Sbjct: 878 PQRTSTVYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPGDKQTNNRAELMALIR 937
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI- 118
A++ + ++ I +DS++ ++ V EW+PKW+ NG++ G VQN++ + EL Q+
Sbjct: 938 AVQLCPNDG-RQLLIMTDSKYSMQTVTEWLPKWRQNGFKTLAGADVQNQDLIVELDKQLS 996
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
G+ K E V H HGN D MA+ A
Sbjct: 997 GRHPRPKLEHVKAHVGIHGNEIVDRMAKYGA 1027
>gi|157833641|pdb|1RBU|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|157833712|pdb|1RNH|A Chain A, Structure Of Ribonuclease H Phased At 2 Angstroms
Resolution By Mad Analysis Of The Selenomethionyl
Protein
Length = 155
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRXELXAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|92119198|ref|YP_578927.1| ribonuclease H [Nitrobacter hamburgensis X14]
gi|123264908|sp|Q1QH30.1|RNH_NITHX RecName: Full=Ribonuclease H; Short=RNase H
gi|91802092|gb|ABE64467.1| RNase HI [Nitrobacter hamburgensis X14]
Length = 151
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K A V + +DSQ++ + + W+ W+ NGWR AD KPV+N + Q L + Q
Sbjct: 63 LKKAA--SVDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNADLWQRLDTAL-QPHQ 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++AR+
Sbjct: 120 VRWHWIKGHAGHDENERADQLARE 143
>gi|415814313|ref|ZP_11505933.1| ribonuclease H [Escherichia coli LT-68]
gi|323171001|gb|EFZ56650.1| ribonuclease H [Escherichia coli LT-68]
Length = 155
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|300819829|ref|ZP_07100015.1| ribonuclease HI [Escherichia coli MS 107-1]
gi|300823400|ref|ZP_07103530.1| ribonuclease HI [Escherichia coli MS 119-7]
gi|300936086|ref|ZP_07151028.1| ribonuclease HI [Escherichia coli MS 21-1]
gi|300958304|ref|ZP_07170447.1| ribonuclease HI [Escherichia coli MS 175-1]
gi|301305772|ref|ZP_07211858.1| ribonuclease HI [Escherichia coli MS 124-1]
gi|301326099|ref|ZP_07219495.1| ribonuclease HI [Escherichia coli MS 78-1]
gi|331671743|ref|ZP_08372539.1| ribonuclease HI [Escherichia coli TA280]
gi|415866176|ref|ZP_11538830.1| ribonuclease HI [Escherichia coli MS 85-1]
gi|415876762|ref|ZP_11543120.1| ribonuclease HI [Escherichia coli MS 79-10]
gi|300315010|gb|EFJ64794.1| ribonuclease HI [Escherichia coli MS 175-1]
gi|300458761|gb|EFK22254.1| ribonuclease HI [Escherichia coli MS 21-1]
gi|300524018|gb|EFK45087.1| ribonuclease HI [Escherichia coli MS 119-7]
gi|300527587|gb|EFK48649.1| ribonuclease HI [Escherichia coli MS 107-1]
gi|300838947|gb|EFK66707.1| ribonuclease HI [Escherichia coli MS 124-1]
gi|300847159|gb|EFK74919.1| ribonuclease HI [Escherichia coli MS 78-1]
gi|315253529|gb|EFU33497.1| ribonuclease HI [Escherichia coli MS 85-1]
gi|331070732|gb|EGI42091.1| ribonuclease HI [Escherichia coli TA280]
gi|342928409|gb|EGU97131.1| ribonuclease HI [Escherichia coli MS 79-10]
Length = 179
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 28 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 84
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 85 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 141
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 142 WEWVKGHAGHPENERCDELARAAA 165
>gi|366160509|ref|ZP_09460371.1| ribonuclease H [Escherichia sp. TW09308]
gi|432370983|ref|ZP_19614050.1| ribonuclease HI [Escherichia coli KTE11]
gi|432452963|ref|ZP_19695210.1| ribonuclease H [Escherichia coli KTE193]
gi|433031618|ref|ZP_20219440.1| ribonuclease H [Escherichia coli KTE112]
gi|430901000|gb|ELC22988.1| ribonuclease HI [Escherichia coli KTE11]
gi|430975557|gb|ELC92452.1| ribonuclease H [Escherichia coli KTE193]
gi|431561096|gb|ELI34483.1| ribonuclease H [Escherichia coli KTE112]
Length = 155
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|300927907|ref|ZP_07143467.1| ribonuclease HI [Escherichia coli MS 187-1]
gi|300464062|gb|EFK27555.1| ribonuclease HI [Escherichia coli MS 187-1]
Length = 179
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 28 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 84
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 85 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 141
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 142 WEWVKGHAGHPENERCDELARAAA 165
>gi|420355641|ref|ZP_14856699.1| ribonuclease HI [Shigella boydii 4444-74]
gi|391271658|gb|EIQ30528.1| ribonuclease HI [Shigella boydii 4444-74]
Length = 155
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGYPENERCDELARAAA 141
>gi|91209282|ref|YP_539268.1| ribonuclease H [Escherichia coli UTI89]
gi|117622496|ref|YP_851409.1| ribonuclease H [Escherichia coli APEC O1]
gi|194432795|ref|ZP_03065080.1| ribonuclease H [Shigella dysenteriae 1012]
gi|237707791|ref|ZP_04538272.1| ribonuclease H [Escherichia sp. 3_2_53FAA]
gi|91070856|gb|ABE05737.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli UTI89]
gi|115511620|gb|ABI99694.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli APEC O1]
gi|194419057|gb|EDX35141.1| ribonuclease H [Shigella dysenteriae 1012]
gi|226899001|gb|EEH85260.1| ribonuclease H [Escherichia sp. 3_2_53FAA]
Length = 192
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 41 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 97
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 98 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 154
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 155 WEWVKGHAGHPENERCDELARAAA 178
>gi|452977701|gb|EME77467.1| hypothetical protein MYCFIDRAFT_212709 [Pseudocercospora fijiensis
CIRAD86]
Length = 214
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
++ +VV DGAC NGK A A YGVYFG ++P N AG V + T+ AEI+ HAL
Sbjct: 57 ESSLVVHIDGACRNNGKPNARAAYGVYFGPDSPFNCAGLVPSTIPQTSTRAEIEALAHAL 116
Query: 62 KQA-KSANID-RVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
+ + N D ++C I +DS F++ + W+ W +NG A GK V + E L+EL
Sbjct: 117 EAVQRICNTDFKLCEIKIATDSSFVVDAMARWVEGWIANGGIGARGKRVAHYERLKELHE 176
Query: 117 QIGQME 122
++ ME
Sbjct: 177 KLDYME 182
>gi|331640664|ref|ZP_08341811.1| ribonuclease HI [Escherichia coli H736]
gi|331645383|ref|ZP_08346487.1| ribonuclease HI [Escherichia coli M605]
gi|331651119|ref|ZP_08352144.1| ribonuclease HI [Escherichia coli M718]
gi|331675872|ref|ZP_08376589.1| ribonuclease HI [Escherichia coli H591]
gi|332281344|ref|ZP_08393757.1| RNase HI [Shigella sp. D9]
gi|344915216|ref|NP_706155.3| RNase HI [Shigella flexneri 2a str. 301]
gi|384541781|ref|YP_005725842.1| RNase HI [Shigella flexneri 2002017]
gi|386279255|ref|ZP_10056941.1| ribonuclease H [Escherichia sp. 4_1_40B]
gi|24050418|gb|AAN41862.1| RNase HI [Shigella flexneri 2a str. 301]
gi|281599566|gb|ADA72550.1| RNase HI [Shigella flexneri 2002017]
gi|331040038|gb|EGI12246.1| ribonuclease HI [Escherichia coli H736]
gi|331045545|gb|EGI17671.1| ribonuclease HI [Escherichia coli M605]
gi|331050860|gb|EGI22912.1| ribonuclease HI [Escherichia coli M718]
gi|331076432|gb|EGI47709.1| ribonuclease HI [Escherichia coli H591]
gi|332103696|gb|EGJ07042.1| RNase HI [Shigella sp. D9]
gi|386123606|gb|EIG72197.1| ribonuclease H [Escherichia sp. 4_1_40B]
Length = 192
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 41 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 97
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 98 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 154
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 155 WEWVKGHAGHPENERCDELARAAA 178
>gi|309797930|ref|ZP_07692310.1| ribonuclease HI [Escherichia coli MS 145-7]
gi|308118470|gb|EFO55732.1| ribonuclease HI [Escherichia coli MS 145-7]
Length = 179
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 28 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 84
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 85 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 141
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 142 WEWVKGHAGHPENERCDELARAAA 165
>gi|432578923|ref|ZP_19815358.1| ribonuclease H [Escherichia coli KTE56]
gi|431109251|gb|ELE13217.1| ribonuclease H [Escherichia coli KTE56]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNIDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|416895565|ref|ZP_11925458.1| ribonuclease H [Escherichia coli STEC_7v]
gi|417112283|ref|ZP_11964406.1| ribonuclease HI [Escherichia coli 1.2741]
gi|422803707|ref|ZP_16852190.1| RNase H [Escherichia coli M863]
gi|323963755|gb|EGB59257.1| RNase H [Escherichia coli M863]
gi|327254933|gb|EGE66543.1| ribonuclease H [Escherichia coli STEC_7v]
gi|386143067|gb|EIG84203.1| ribonuclease HI [Escherichia coli 1.2741]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|429092427|ref|ZP_19155058.1| Ribonuclease HI [Cronobacter dublinensis 1210]
gi|426742822|emb|CCJ81171.1| Ribonuclease HI [Cronobacter dublinensis 1210]
Length = 158
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI +L+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVSLEALRE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ E +KW
Sbjct: 62 HCI--VTLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDTALGQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|15799890|ref|NP_285902.1| ribonuclease H [Escherichia coli O157:H7 str. EDL933]
gi|15829464|ref|NP_308237.1| ribonuclease H [Escherichia coli O157:H7 str. Sakai]
gi|16128201|ref|NP_414750.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|30061766|ref|NP_835937.1| ribonuclease H [Shigella flexneri 2a str. 2457T]
gi|74310829|ref|YP_309248.1| ribonuclease H [Shigella sonnei Ss046]
gi|82542807|ref|YP_406754.1| ribonuclease H [Shigella boydii Sb227]
gi|82775600|ref|YP_401947.1| ribonuclease H [Shigella dysenteriae Sd197]
gi|157156093|ref|YP_001461380.1| ribonuclease H [Escherichia coli E24377A]
gi|168750162|ref|ZP_02775184.1| ribonuclease H [Escherichia coli O157:H7 str. EC4113]
gi|168757207|ref|ZP_02782214.1| ribonuclease H [Escherichia coli O157:H7 str. EC4401]
gi|168763422|ref|ZP_02788429.1| ribonuclease H [Escherichia coli O157:H7 str. EC4501]
gi|168769977|ref|ZP_02794984.1| ribonuclease H [Escherichia coli O157:H7 str. EC4486]
gi|168776182|ref|ZP_02801189.1| ribonuclease H [Escherichia coli O157:H7 str. EC4196]
gi|168782939|ref|ZP_02807946.1| ribonuclease H [Escherichia coli O157:H7 str. EC4076]
gi|168789657|ref|ZP_02814664.1| ribonuclease H [Escherichia coli O157:H7 str. EC869]
gi|168800384|ref|ZP_02825391.1| ribonuclease H [Escherichia coli O157:H7 str. EC508]
gi|170021438|ref|YP_001726392.1| ribonuclease H [Escherichia coli ATCC 8739]
gi|170079845|ref|YP_001729165.1| ribonuclease H [Escherichia coli str. K-12 substr. DH10B]
gi|170682534|ref|YP_001742337.1| ribonuclease H [Escherichia coli SMS-3-5]
gi|187730560|ref|YP_001879011.1| ribonuclease H [Shigella boydii CDC 3083-94]
gi|188495937|ref|ZP_03003207.1| ribonuclease H [Escherichia coli 53638]
gi|191167012|ref|ZP_03028834.1| ribonuclease H [Escherichia coli B7A]
gi|193067575|ref|ZP_03048542.1| ribonuclease H [Escherichia coli E110019]
gi|194438212|ref|ZP_03070304.1| ribonuclease H [Escherichia coli 101-1]
gi|195938586|ref|ZP_03083968.1| ribonuclease H [Escherichia coli O157:H7 str. EC4024]
gi|208808292|ref|ZP_03250629.1| ribonuclease H [Escherichia coli O157:H7 str. EC4206]
gi|208811997|ref|ZP_03253326.1| ribonuclease H [Escherichia coli O157:H7 str. EC4045]
gi|208820698|ref|ZP_03261018.1| ribonuclease H [Escherichia coli O157:H7 str. EC4042]
gi|209396174|ref|YP_002268817.1| ribonuclease H [Escherichia coli O157:H7 str. EC4115]
gi|209917401|ref|YP_002291485.1| ribonuclease H [Escherichia coli SE11]
gi|217324249|ref|ZP_03440333.1| ribonuclease H [Escherichia coli O157:H7 str. TW14588]
gi|218547664|ref|YP_002381455.1| ribonuclease H [Escherichia fergusonii ATCC 35469]
gi|218552789|ref|YP_002385702.1| ribonuclease H [Escherichia coli IAI1]
gi|218557150|ref|YP_002390063.1| ribonuclease H [Escherichia coli S88]
gi|218688084|ref|YP_002396296.1| ribonuclease H [Escherichia coli ED1a]
gi|218698839|ref|YP_002406468.1| ribonuclease H [Escherichia coli IAI39]
gi|218703463|ref|YP_002410982.1| ribonuclease H [Escherichia coli UMN026]
gi|238899607|ref|YP_002925403.1| ribonuclease H [Escherichia coli BW2952]
gi|251783771|ref|YP_002998075.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli BL21(DE3)]
gi|253774764|ref|YP_003037595.1| ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160328|ref|YP_003043436.1| ribonuclease H [Escherichia coli B str. REL606]
gi|254287131|ref|YP_003052879.1| ribonuclease H [Escherichia coli BL21(DE3)]
gi|254791341|ref|YP_003076178.1| ribonuclease H [Escherichia coli O157:H7 str. TW14359]
gi|260853419|ref|YP_003227310.1| ribonuclease H [Escherichia coli O26:H11 str. 11368]
gi|260866357|ref|YP_003232759.1| ribonuclease HI [Escherichia coli O111:H- str. 11128]
gi|261223755|ref|ZP_05938036.1| ribonuclease H [Escherichia coli O157:H7 str. FRIK2000]
gi|261255835|ref|ZP_05948368.1| ribonuclease H [Escherichia coli O157:H7 str. FRIK966]
gi|291281031|ref|YP_003497849.1| RNase HI [Escherichia coli O55:H7 str. CB9615]
gi|293403293|ref|ZP_06647384.1| rnhA [Escherichia coli FVEC1412]
gi|293408303|ref|ZP_06652142.1| ribonuclease HI [Escherichia coli B354]
gi|293413469|ref|ZP_06656118.1| ribonuclease HI [Escherichia coli B185]
gi|293418308|ref|ZP_06660743.1| ribonuclease HI [Escherichia coli B088]
gi|297518675|ref|ZP_06937061.1| ribonuclease H [Escherichia coli OP50]
gi|298378907|ref|ZP_06988788.1| ribonuclease H [Escherichia coli FVEC1302]
gi|300900030|ref|ZP_07118227.1| ribonuclease HI [Escherichia coli MS 198-1]
gi|300905643|ref|ZP_07123389.1| ribonuclease HI [Escherichia coli MS 84-1]
gi|300919146|ref|ZP_07135679.1| ribonuclease HI [Escherichia coli MS 115-1]
gi|300926566|ref|ZP_07142352.1| ribonuclease HI [Escherichia coli MS 182-1]
gi|300949354|ref|ZP_07163366.1| ribonuclease HI [Escherichia coli MS 116-1]
gi|301021446|ref|ZP_07185470.1| ribonuclease HI [Escherichia coli MS 69-1]
gi|301029641|ref|ZP_07192703.1| ribonuclease HI [Escherichia coli MS 196-1]
gi|301645471|ref|ZP_07245408.1| ribonuclease HI [Escherichia coli MS 146-1]
gi|307314696|ref|ZP_07594294.1| Ribonuclease H [Escherichia coli W]
gi|309787111|ref|ZP_07681723.1| ribonuclease H [Shigella dysenteriae 1617]
gi|312970312|ref|ZP_07784493.1| ribonuclease H [Escherichia coli 1827-70]
gi|331661585|ref|ZP_08362508.1| ribonuclease HI [Escherichia coli TA143]
gi|331666455|ref|ZP_08367335.1| ribonuclease HI [Escherichia coli TA271]
gi|378714453|ref|YP_005279346.1| Ribonuclease H [Escherichia coli KO11FL]
gi|383176817|ref|YP_005454822.1| ribonuclease H [Shigella sonnei 53G]
gi|386596900|ref|YP_006093300.1| Ribonuclease H [Escherichia coli DH1]
gi|386597958|ref|YP_006099464.1| ribonuclease H [Escherichia coli IHE3034]
gi|386605820|ref|YP_006112120.1| ribonuclease H [Escherichia coli UM146]
gi|386607510|ref|YP_006122996.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
W]
gi|386612373|ref|YP_006132039.1| ribonuclease HI RnhA [Escherichia coli UMNK88]
gi|386622622|ref|YP_006142350.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O7:K1 str. CE10]
gi|386698707|ref|YP_006162544.1| ribonuclease H [Escherichia coli KO11FL]
gi|386703407|ref|YP_006167254.1| RNase HI [Escherichia coli P12b]
gi|386707937|ref|YP_006171658.1| ribonuclease H [Escherichia coli W]
gi|387505136|ref|YP_006157392.1| ribonuclease H [Escherichia coli O55:H7 str. RM12579]
gi|387605684|ref|YP_006094540.1| ribonuclease HI [Escherichia coli 042]
gi|387610680|ref|YP_006113796.1| ribonuclease HI [Escherichia coli ETEC H10407]
gi|387619976|ref|YP_006127603.1| ribonuclease H [Escherichia coli DH1]
gi|387880767|ref|YP_006311069.1| ribonuclease H [Escherichia coli Xuzhou21]
gi|388476327|ref|YP_488511.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. W3110]
gi|404373561|ref|ZP_10978806.1| ribonuclease H [Escherichia sp. 1_1_43]
gi|414574400|ref|ZP_11431614.1| ribonuclease HI [Shigella sonnei 3233-85]
gi|415777408|ref|ZP_11488660.1| ribonuclease H [Escherichia coli 3431]
gi|415780840|ref|ZP_11490627.1| ribonuclease H [Escherichia coli EPECa14]
gi|415824025|ref|ZP_11512400.1| ribonuclease H [Escherichia coli OK1180]
gi|415832611|ref|ZP_11518002.1| ribonuclease H [Escherichia coli OK1357]
gi|415859651|ref|ZP_11533850.1| ribonuclease H [Shigella flexneri 2a str. 2457T]
gi|416274000|ref|ZP_11643490.1| Ribonuclease HI [Shigella dysenteriae CDC 74-1112]
gi|416284714|ref|ZP_11647375.1| Ribonuclease HI [Shigella boydii ATCC 9905]
gi|416294778|ref|ZP_11650992.1| Ribonuclease HI [Shigella flexneri CDC 796-83]
gi|416314815|ref|ZP_11659002.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1044]
gi|416318909|ref|ZP_11661461.1| Ribonuclease HI [Escherichia coli O157:H7 str. EC1212]
gi|416328201|ref|ZP_11667991.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1125]
gi|416780727|ref|ZP_11877003.1| ribonuclease H [Escherichia coli O157:H7 str. G5101]
gi|416792008|ref|ZP_11881925.1| ribonuclease H [Escherichia coli O157:H- str. 493-89]
gi|416801353|ref|ZP_11885522.1| ribonuclease H [Escherichia coli O157:H- str. H 2687]
gi|416813899|ref|ZP_11891392.1| ribonuclease H [Escherichia coli O55:H7 str. 3256-97]
gi|416824593|ref|ZP_11896058.1| ribonuclease H [Escherichia coli O55:H7 str. USDA 5905]
gi|416834536|ref|ZP_11900968.1| ribonuclease H [Escherichia coli O157:H7 str. LSU-61]
gi|417082576|ref|ZP_11950847.1| ribonuclease H [Escherichia coli cloneA_i1]
gi|417126786|ref|ZP_11974340.1| ribonuclease HI [Escherichia coli 97.0246]
gi|417135003|ref|ZP_11979788.1| ribonuclease HI [Escherichia coli 5.0588]
gi|417136634|ref|ZP_11980662.1| ribonuclease HI [Escherichia coli 97.0259]
gi|417152520|ref|ZP_11991311.1| ribonuclease HI [Escherichia coli 96.0497]
gi|417190923|ref|ZP_12013519.1| ribonuclease HI [Escherichia coli 4.0522]
gi|417216542|ref|ZP_12023214.1| ribonuclease HI [Escherichia coli JB1-95]
gi|417224961|ref|ZP_12028252.1| ribonuclease HI [Escherichia coli 96.154]
gi|417230023|ref|ZP_12031609.1| ribonuclease HI [Escherichia coli 5.0959]
gi|417260783|ref|ZP_12048281.1| ribonuclease HI [Escherichia coli 2.3916]
gi|417268362|ref|ZP_12055723.1| ribonuclease HI [Escherichia coli 3.3884]
gi|417273752|ref|ZP_12061097.1| ribonuclease HI [Escherichia coli 2.4168]
gi|417279662|ref|ZP_12066968.1| ribonuclease HI [Escherichia coli 3.2303]
gi|417292952|ref|ZP_12080232.1| ribonuclease HI [Escherichia coli B41]
gi|417295649|ref|ZP_12082902.1| ribonuclease HI [Escherichia coli 900105 (10e)]
gi|417306743|ref|ZP_12093628.1| Ribonuclease H [Escherichia coli PCN033]
gi|417579431|ref|ZP_12230256.1| ribonuclease H [Escherichia coli STEC_B2F1]
gi|417585029|ref|ZP_12235811.1| ribonuclease H [Escherichia coli STEC_C165-02]
gi|417589831|ref|ZP_12240552.1| ribonuclease H [Escherichia coli 2534-86]
gi|417600476|ref|ZP_12251062.1| ribonuclease H [Escherichia coli STEC_94C]
gi|417606141|ref|ZP_12256673.1| ribonuclease H [Escherichia coli STEC_DG131-3]
gi|417611222|ref|ZP_12261697.1| ribonuclease H [Escherichia coli STEC_EH250]
gi|417616554|ref|ZP_12266992.1| ribonuclease H [Escherichia coli G58-1]
gi|417627109|ref|ZP_12277358.1| ribonuclease H [Escherichia coli STEC_MHI813]
gi|417632691|ref|ZP_12282913.1| ribonuclease H [Escherichia coli STEC_S1191]
gi|417637477|ref|ZP_12287658.1| ribonuclease H [Escherichia coli TX1999]
gi|417660842|ref|ZP_12310423.1| ribonuclease H1 [Escherichia coli AA86]
gi|417665281|ref|ZP_12314849.1| ribonuclease H [Escherichia coli STEC_O31]
gi|417682643|ref|ZP_12331997.1| ribonuclease H [Shigella boydii 3594-74]
gi|417700245|ref|ZP_12349392.1| ribonuclease H [Shigella flexneri K-218]
gi|417705719|ref|ZP_12354791.1| ribonuclease H [Shigella flexneri VA-6]
gi|417710850|ref|ZP_12359857.1| ribonuclease H [Shigella flexneri K-272]
gi|417715517|ref|ZP_12364453.1| ribonuclease H [Shigella flexneri K-227]
gi|417721194|ref|ZP_12370047.1| ribonuclease H [Shigella flexneri K-304]
gi|417726560|ref|ZP_12375309.1| ribonuclease H [Shigella flexneri K-671]
gi|417735333|ref|ZP_12383979.1| ribonuclease H [Shigella flexneri 2747-71]
gi|417737052|ref|ZP_12385664.1| ribonuclease H [Shigella flexneri 4343-70]
gi|417741697|ref|ZP_12390252.1| ribonuclease HI [Shigella flexneri 2930-71]
gi|417826294|ref|ZP_12472874.1| ribonuclease HI [Shigella flexneri J1713]
gi|417946840|ref|ZP_12590049.1| ribonuclease H [Escherichia coli XH140A]
gi|417978125|ref|ZP_12618898.1| ribonuclease H [Escherichia coli XH001]
gi|418253002|ref|ZP_12878375.1| ribonuclease HI [Shigella flexneri 6603-63]
gi|418261713|ref|ZP_12883635.1| ribonuclease HI [Shigella sonnei str. Moseley]
gi|418301098|ref|ZP_12912892.1| ribonuclease H (RNase H) [Escherichia coli UMNF18]
gi|418942828|ref|ZP_13496074.1| ribonuclease H [Escherichia coli O157:H43 str. T22]
gi|418959660|ref|ZP_13511557.1| ribonuclease HI [Escherichia coli J53]
gi|419044993|ref|ZP_13591949.1| ribonuclease HI [Escherichia coli DEC3A]
gi|419049877|ref|ZP_13596788.1| ribonuclease HI [Escherichia coli DEC3B]
gi|419059608|ref|ZP_13606407.1| ribonuclease HI [Escherichia coli DEC3C]
gi|419060417|ref|ZP_13607204.1| ribonuclease HI [Escherichia coli DEC3D]
gi|419066251|ref|ZP_13612940.1| ribonuclease HI [Escherichia coli DEC3E]
gi|419072867|ref|ZP_13618446.1| ribonuclease HI [Escherichia coli DEC3F]
gi|419078835|ref|ZP_13624319.1| ribonuclease HI [Escherichia coli DEC4A]
gi|419090074|ref|ZP_13635406.1| ribonuclease HI [Escherichia coli DEC4B]
gi|419091952|ref|ZP_13637253.1| ribonuclease HI [Escherichia coli DEC4C]
gi|419096090|ref|ZP_13641335.1| ribonuclease HI [Escherichia coli DEC4D]
gi|419101772|ref|ZP_13646940.1| ribonuclease HI [Escherichia coli DEC4E]
gi|419107234|ref|ZP_13652344.1| ribonuclease HI [Escherichia coli DEC4F]
gi|419113032|ref|ZP_13658067.1| ribonuclease HI [Escherichia coli DEC5A]
gi|419118540|ref|ZP_13663527.1| ribonuclease HI [Escherichia coli DEC5B]
gi|419124178|ref|ZP_13669087.1| ribonuclease HI [Escherichia coli DEC5C]
gi|419129778|ref|ZP_13674634.1| ribonuclease HI [Escherichia coli DEC5D]
gi|419134567|ref|ZP_13679376.1| ribonuclease HI [Escherichia coli DEC5E]
gi|419140669|ref|ZP_13685426.1| ribonuclease HI [Escherichia coli DEC6A]
gi|419146284|ref|ZP_13690981.1| ribonuclease HI [Escherichia coli DEC6B]
gi|419152053|ref|ZP_13696644.1| ribonuclease HI [Escherichia coli DEC6C]
gi|419157471|ref|ZP_13702001.1| ribonuclease HI [Escherichia coli DEC6D]
gi|419162475|ref|ZP_13706955.1| ribonuclease HI [Escherichia coli DEC6E]
gi|419168182|ref|ZP_13712583.1| ribonuclease HI [Escherichia coli DEC7A]
gi|419173589|ref|ZP_13717447.1| ribonuclease HI [Escherichia coli DEC7B]
gi|419183993|ref|ZP_13727556.1| ribonuclease HI [Escherichia coli DEC7C]
gi|419184690|ref|ZP_13728216.1| ribonuclease HI [Escherichia coli DEC7D]
gi|419189958|ref|ZP_13733430.1| ribonuclease HI [Escherichia coli DEC7E]
gi|419195171|ref|ZP_13738585.1| ribonuclease HI [Escherichia coli DEC8A]
gi|419206715|ref|ZP_13749853.1| ribonuclease HI [Escherichia coli DEC8B]
gi|419207163|ref|ZP_13750293.1| ribonuclease HI [Escherichia coli DEC8C]
gi|419213586|ref|ZP_13756620.1| ribonuclease HI [Escherichia coli DEC8D]
gi|419219429|ref|ZP_13762388.1| ribonuclease HI [Escherichia coli DEC8E]
gi|419224896|ref|ZP_13767789.1| ribonuclease HI [Escherichia coli DEC9A]
gi|419230774|ref|ZP_13773569.1| ribonuclease HI [Escherichia coli DEC9B]
gi|419236027|ref|ZP_13778779.1| ribonuclease HI [Escherichia coli DEC9C]
gi|419241613|ref|ZP_13784264.1| ribonuclease HI [Escherichia coli DEC9D]
gi|419247017|ref|ZP_13789635.1| ribonuclease HI [Escherichia coli DEC9E]
gi|419257105|ref|ZP_13799604.1| ribonuclease HI [Escherichia coli DEC10A]
gi|419258794|ref|ZP_13801257.1| ribonuclease HI [Escherichia coli DEC10B]
gi|419269554|ref|ZP_13811895.1| ribonuclease HI [Escherichia coli DEC10C]
gi|419270485|ref|ZP_13812818.1| ribonuclease HI [Escherichia coli DEC10D]
gi|419281846|ref|ZP_13824070.1| ribonuclease HI [Escherichia coli DEC10F]
gi|419368492|ref|ZP_13909625.1| ribonuclease HI [Escherichia coli DEC14A]
gi|419389629|ref|ZP_13930471.1| ribonuclease HI [Escherichia coli DEC15A]
gi|419394802|ref|ZP_13935588.1| ribonuclease HI [Escherichia coli DEC15B]
gi|419401685|ref|ZP_13942411.1| ribonuclease HI [Escherichia coli DEC15C]
gi|419405332|ref|ZP_13946036.1| ribonuclease HI [Escherichia coli DEC15D]
gi|419410843|ref|ZP_13951518.1| ribonuclease HI [Escherichia coli DEC15E]
gi|419806184|ref|ZP_14331299.1| ribonuclease HI [Escherichia coli AI27]
gi|419811179|ref|ZP_14336056.1| ribonuclease H [Escherichia coli O32:H37 str. P4]
gi|419878417|ref|ZP_14399887.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9534]
gi|419884844|ref|ZP_14405720.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9545]
gi|419892665|ref|ZP_14412676.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9570]
gi|419896733|ref|ZP_14416395.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9574]
gi|419904436|ref|ZP_14423434.1| ribonuclease H [Escherichia coli O26:H11 str. CVM9942]
gi|419910527|ref|ZP_14429044.1| hypothetical protein ECO10026_29509 [Escherichia coli O26:H11 str.
CVM10026]
gi|419917102|ref|ZP_14435377.1| ribonuclease H [Escherichia coli KD2]
gi|419923487|ref|ZP_14441432.1| ribonuclease H [Escherichia coli 541-15]
gi|419937386|ref|ZP_14454290.1| ribonuclease H [Escherichia coli 576-1]
gi|419942157|ref|ZP_14458783.1| ribonuclease H [Escherichia coli 75]
gi|419943215|ref|ZP_14459777.1| ribonuclease H [Escherichia coli HM605]
gi|419947842|ref|ZP_14464155.1| ribonuclease H [Escherichia coli CUMT8]
gi|420090762|ref|ZP_14602526.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9602]
gi|420097521|ref|ZP_14608819.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9634]
gi|420104733|ref|ZP_14615380.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9455]
gi|420111315|ref|ZP_14621152.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9553]
gi|420117696|ref|ZP_14627050.1| ribonuclease H [Escherichia coli O26:H11 str. CVM10021]
gi|420123518|ref|ZP_14632406.1| ribonuclease H [Escherichia coli O26:H11 str. CVM10030]
gi|420129488|ref|ZP_14638019.1| RNase HI [Escherichia coli O26:H11 str. CVM10224]
gi|420135691|ref|ZP_14643770.1| ribonuclease H [Escherichia coli O26:H11 str. CVM9952]
gi|420267491|ref|ZP_14769901.1| ribonuclease H [Escherichia coli PA22]
gi|420273183|ref|ZP_14775517.1| ribonuclease H [Escherichia coli PA40]
gi|420280360|ref|ZP_14782612.1| ribonuclease H [Escherichia coli TW06591]
gi|420284771|ref|ZP_14786990.1| ribonuclease H [Escherichia coli TW10246]
gi|420290234|ref|ZP_14792402.1| ribonuclease H [Escherichia coli TW11039]
gi|420295954|ref|ZP_14798051.1| ribonuclease H [Escherichia coli TW09109]
gi|420301936|ref|ZP_14803970.1| ribonuclease H [Escherichia coli TW10119]
gi|420307760|ref|ZP_14809734.1| ribonuclease H [Escherichia coli EC1738]
gi|420313132|ref|ZP_14815046.1| ribonuclease H [Escherichia coli EC1734]
gi|420318688|ref|ZP_14820547.1| ribonuclease HI [Shigella flexneri 2850-71]
gi|420323867|ref|ZP_14825657.1| ribonuclease HI [Shigella flexneri CCH060]
gi|420329346|ref|ZP_14831062.1| ribonuclease HI [Shigella flexneri K-1770]
gi|420339686|ref|ZP_14841222.1| ribonuclease HI [Shigella flexneri K-404]
gi|420361195|ref|ZP_14862138.1| ribonuclease HI [Shigella sonnei 3226-85]
gi|420361787|ref|ZP_14862718.1| ribonuclease HI [Shigella sonnei 4822-66]
gi|420369809|ref|ZP_14870472.1| ribonuclease HI [Shigella flexneri 1235-66]
gi|420378546|ref|ZP_14878049.1| ribonuclease HI [Shigella dysenteriae 225-75]
gi|420383849|ref|ZP_14883241.1| ribonuclease HI [Escherichia coli EPECa12]
gi|421680932|ref|ZP_16120772.1| ribonuclease HI [Shigella flexneri 1485-80]
gi|421778108|ref|ZP_16214692.1| ribonuclease HI [Escherichia coli AD30]
gi|421810358|ref|ZP_16246177.1| ribonuclease H [Escherichia coli 8.0416]
gi|421816430|ref|ZP_16252002.1| RNase H family protein [Escherichia coli 10.0821]
gi|421821825|ref|ZP_16257269.1| ribonuclease H [Escherichia coli FRIK920]
gi|421828577|ref|ZP_16263908.1| ribonuclease H [Escherichia coli PA7]
gi|422335531|ref|ZP_16416529.1| ribonuclease H [Escherichia coli 4_1_47FAA]
gi|422351269|ref|ZP_16432093.1| ribonuclease HI [Escherichia coli MS 117-3]
gi|422356485|ref|ZP_16437168.1| ribonuclease HI [Escherichia coli MS 110-3]
gi|422752625|ref|ZP_16806523.1| RNase H [Escherichia coli H252]
gi|422752886|ref|ZP_16806713.1| RNase H [Escherichia coli H263]
gi|422764642|ref|ZP_16818388.1| RNase H [Escherichia coli E1167]
gi|422764754|ref|ZP_16818481.1| RNase H [Escherichia coli E1520]
gi|422769463|ref|ZP_16823154.1| RNase H [Escherichia coli E482]
gi|422776853|ref|ZP_16830506.1| RNase H [Escherichia coli H120]
gi|422783020|ref|ZP_16835805.1| RNase H [Escherichia coli TW10509]
gi|422784861|ref|ZP_16837600.1| RNase H [Escherichia coli H489]
gi|422791019|ref|ZP_16843722.1| RNase H [Escherichia coli TA007]
gi|422808026|ref|ZP_16856454.1| RNase H [Escherichia fergusonii B253]
gi|422816225|ref|ZP_16864440.1| ribonuclease H [Escherichia coli M919]
gi|422831826|ref|ZP_16879960.1| ribonuclease H [Escherichia coli B093]
gi|422835094|ref|ZP_16883152.1| ribonuclease H [Escherichia coli E101]
gi|422838759|ref|ZP_16886731.1| ribonuclease H [Escherichia coli H397]
gi|422957448|ref|ZP_16969662.1| ribonuclease H [Escherichia coli H494]
gi|422979250|ref|ZP_16977818.1| ribonuclease H [Escherichia coli TA124]
gi|423652610|ref|ZP_17627980.1| ribonuclease H [Escherichia coli PA31]
gi|423700991|ref|ZP_17675450.1| ribonuclease H [Escherichia coli H730]
gi|423709942|ref|ZP_17684292.1| ribonuclease H [Escherichia coli B799]
gi|424074979|ref|ZP_17812365.1| ribonuclease H [Escherichia coli FDA505]
gi|424081228|ref|ZP_17818129.1| ribonuclease H [Escherichia coli FDA517]
gi|424087904|ref|ZP_17824199.1| ribonuclease H [Escherichia coli FRIK1996]
gi|424094116|ref|ZP_17829921.1| ribonuclease H [Escherichia coli FRIK1985]
gi|424100527|ref|ZP_17835730.1| ribonuclease H [Escherichia coli FRIK1990]
gi|424107353|ref|ZP_17841968.1| ribonuclease H [Escherichia coli 93-001]
gi|424113327|ref|ZP_17847519.1| ribonuclease H [Escherichia coli PA3]
gi|424119454|ref|ZP_17853207.1| ribonuclease H [Escherichia coli PA5]
gi|424125671|ref|ZP_17858907.1| ribonuclease H [Escherichia coli PA9]
gi|424131679|ref|ZP_17864529.1| ribonuclease H [Escherichia coli PA10]
gi|424138291|ref|ZP_17870627.1| ribonuclease H [Escherichia coli PA14]
gi|424144746|ref|ZP_17876548.1| ribonuclease H [Escherichia coli PA15]
gi|424150892|ref|ZP_17882191.1| ribonuclease H [Escherichia coli PA24]
gi|424181666|ref|ZP_17887607.1| ribonuclease H [Escherichia coli PA25]
gi|424260929|ref|ZP_17893509.1| ribonuclease H [Escherichia coli PA28]
gi|424418211|ref|ZP_17899280.1| ribonuclease H [Escherichia coli PA32]
gi|424453290|ref|ZP_17904871.1| ribonuclease H [Escherichia coli PA33]
gi|424459570|ref|ZP_17910570.1| ribonuclease H [Escherichia coli PA39]
gi|424466028|ref|ZP_17916260.1| ribonuclease H [Escherichia coli PA41]
gi|424472630|ref|ZP_17922336.1| ribonuclease H [Escherichia coli PA42]
gi|424478601|ref|ZP_17927884.1| ribonuclease H [Escherichia coli TW07945]
gi|424484627|ref|ZP_17933539.1| ribonuclease H [Escherichia coli TW09098]
gi|424490724|ref|ZP_17939189.1| ribonuclease H [Escherichia coli TW09195]
gi|424497843|ref|ZP_17945158.1| ribonuclease H [Escherichia coli EC4203]
gi|424504087|ref|ZP_17950906.1| ribonuclease H [Escherichia coli EC4196]
gi|424516691|ref|ZP_17961262.1| ribonuclease H [Escherichia coli TW14313]
gi|424517911|ref|ZP_17962379.1| ribonuclease H [Escherichia coli TW14301]
gi|424523737|ref|ZP_17967798.1| ribonuclease H [Escherichia coli EC4421]
gi|424529945|ref|ZP_17973607.1| ribonuclease H [Escherichia coli EC4422]
gi|424535916|ref|ZP_17979217.1| ribonuclease H [Escherichia coli EC4013]
gi|424541804|ref|ZP_17984681.1| ribonuclease H [Escherichia coli EC4402]
gi|424548128|ref|ZP_17990383.1| ribonuclease H [Escherichia coli EC4439]
gi|424554416|ref|ZP_17996178.1| ribonuclease H [Escherichia coli EC4436]
gi|424560761|ref|ZP_18002081.1| ribonuclease H [Escherichia coli EC4437]
gi|424566772|ref|ZP_18007732.1| ribonuclease H [Escherichia coli EC4448]
gi|424572971|ref|ZP_18013436.1| ribonuclease H [Escherichia coli EC1845]
gi|424578949|ref|ZP_18018917.1| ribonuclease H [Escherichia coli EC1863]
gi|424751750|ref|ZP_18179776.1| RNase HI [Escherichia coli O26:H11 str. CFSAN001629]
gi|424766180|ref|ZP_18193538.1| RNase HI [Escherichia coli O111:H11 str. CFSAN001630]
gi|424772723|ref|ZP_18199813.1| RNase HI [Escherichia coli O111:H8 str. CFSAN001632]
gi|424815120|ref|ZP_18240271.1| ribonuclease H [Escherichia fergusonii ECD227]
gi|425095614|ref|ZP_18498666.1| RNase H family protein [Escherichia coli 3.4870]
gi|425101696|ref|ZP_18504378.1| RNase H family protein [Escherichia coli 5.2239]
gi|425107556|ref|ZP_18509834.1| ribonuclease H [Escherichia coli 6.0172]
gi|425117386|ref|ZP_18519159.1| ribonuclease H [Escherichia coli 8.0566]
gi|425118291|ref|ZP_18520036.1| RNase H family protein [Escherichia coli 8.0569]
gi|425123367|ref|ZP_18524975.1| RNase H family protein [Escherichia coli 8.0586]
gi|425129393|ref|ZP_18530528.1| RNase H family protein [Escherichia coli 8.2524]
gi|425135734|ref|ZP_18536497.1| ribonuclease H [Escherichia coli 10.0833]
gi|425141679|ref|ZP_18542005.1| RNase H family protein [Escherichia coli 10.0869]
gi|425147957|ref|ZP_18547888.1| RNase H family protein [Escherichia coli 88.0221]
gi|425153571|ref|ZP_18553152.1| ribonuclease H [Escherichia coli PA34]
gi|425160034|ref|ZP_18559237.1| ribonuclease H [Escherichia coli FDA506]
gi|425165550|ref|ZP_18564385.1| ribonuclease H [Escherichia coli FDA507]
gi|425171836|ref|ZP_18570265.1| ribonuclease H [Escherichia coli FDA504]
gi|425177633|ref|ZP_18575715.1| ribonuclease H [Escherichia coli FRIK1999]
gi|425183861|ref|ZP_18581515.1| ribonuclease H [Escherichia coli FRIK1997]
gi|425190591|ref|ZP_18587745.1| ribonuclease H [Escherichia coli NE1487]
gi|425196893|ref|ZP_18593578.1| ribonuclease H [Escherichia coli NE037]
gi|425203587|ref|ZP_18599742.1| ribonuclease H [Escherichia coli FRIK2001]
gi|425209362|ref|ZP_18605128.1| ribonuclease H [Escherichia coli PA4]
gi|425215403|ref|ZP_18610749.1| ribonuclease H [Escherichia coli PA23]
gi|425221970|ref|ZP_18616856.1| ribonuclease H [Escherichia coli PA49]
gi|425228221|ref|ZP_18622645.1| ribonuclease H [Escherichia coli PA45]
gi|425234521|ref|ZP_18628506.1| ribonuclease H [Escherichia coli TT12B]
gi|425240492|ref|ZP_18634156.1| ribonuclease H [Escherichia coli MA6]
gi|425246573|ref|ZP_18639805.1| ribonuclease H [Escherichia coli 5905]
gi|425252362|ref|ZP_18645276.1| ribonuclease H [Escherichia coli CB7326]
gi|425258698|ref|ZP_18651096.1| ribonuclease H [Escherichia coli EC96038]
gi|425264813|ref|ZP_18656763.1| ribonuclease H [Escherichia coli 5412]
gi|425271398|ref|ZP_18662899.1| ribonuclease H [Escherichia coli TW15901]
gi|425281551|ref|ZP_18672674.1| ribonuclease H [Escherichia coli TW00353]
gi|425286729|ref|ZP_18677678.1| ribonuclease H [Escherichia coli 3006]
gi|425292195|ref|ZP_18682827.1| ribonuclease H [Escherichia coli PA38]
gi|425303731|ref|ZP_18693537.1| ribonuclease H [Escherichia coli N1]
gi|425308975|ref|ZP_18698480.1| ribonuclease H [Escherichia coli EC1735]
gi|425314902|ref|ZP_18704014.1| ribonuclease H [Escherichia coli EC1736]
gi|425320979|ref|ZP_18709692.1| ribonuclease H [Escherichia coli EC1737]
gi|425327138|ref|ZP_18715404.1| ribonuclease H [Escherichia coli EC1846]
gi|425333328|ref|ZP_18721090.1| ribonuclease H [Escherichia coli EC1847]
gi|425339748|ref|ZP_18727022.1| ribonuclease H [Escherichia coli EC1848]
gi|425345623|ref|ZP_18732465.1| ribonuclease H [Escherichia coli EC1849]
gi|425351841|ref|ZP_18738256.1| ribonuclease H [Escherichia coli EC1850]
gi|425357828|ref|ZP_18743833.1| ribonuclease H [Escherichia coli EC1856]
gi|425363939|ref|ZP_18749535.1| ribonuclease H [Escherichia coli EC1862]
gi|425370375|ref|ZP_18755375.1| ribonuclease H [Escherichia coli EC1864]
gi|425376962|ref|ZP_18761385.1| ribonuclease H [Escherichia coli EC1865]
gi|425383165|ref|ZP_18767078.1| ribonuclease H [Escherichia coli EC1866]
gi|425389871|ref|ZP_18773360.1| ribonuclease H [Escherichia coli EC1868]
gi|425395994|ref|ZP_18779068.1| ribonuclease H [Escherichia coli EC1869]
gi|425401962|ref|ZP_18784602.1| ribonuclease H [Escherichia coli EC1870]
gi|425408527|ref|ZP_18790709.1| ribonuclease H [Escherichia coli NE098]
gi|425414797|ref|ZP_18796460.1| ribonuclease H [Escherichia coli FRIK523]
gi|425420809|ref|ZP_18802046.1| ribonuclease H [Escherichia coli 0.1288]
gi|425425944|ref|ZP_18807023.1| ribonuclease H [Escherichia coli 0.1304]
gi|427803283|ref|ZP_18970350.1| RNase HI [Escherichia coli chi7122]
gi|427807888|ref|ZP_18974953.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli]
gi|428944573|ref|ZP_19017260.1| RNase H family protein [Escherichia coli 88.1467]
gi|428950749|ref|ZP_19022924.1| RNase H family protein [Escherichia coli 88.1042]
gi|428956596|ref|ZP_19028338.1| RNase H family protein [Escherichia coli 89.0511]
gi|428962964|ref|ZP_19034178.1| RNase H family protein [Escherichia coli 90.0091]
gi|428969050|ref|ZP_19039712.1| RNase H family protein [Escherichia coli 90.0039]
gi|428975578|ref|ZP_19045782.1| RNase H family protein [Escherichia coli 90.2281]
gi|428981284|ref|ZP_19051049.1| RNase H family protein [Escherichia coli 93.0055]
gi|428987551|ref|ZP_19056872.1| RNase H family protein [Escherichia coli 93.0056]
gi|428993362|ref|ZP_19062300.1| RNase H family protein [Escherichia coli 94.0618]
gi|428999450|ref|ZP_19067994.1| RNase H family protein [Escherichia coli 95.0183]
gi|429010714|ref|ZP_19078100.1| RNase H family protein [Escherichia coli 95.1288]
gi|429012055|ref|ZP_19079336.1| RNase H family protein [Escherichia coli 95.0943]
gi|429018271|ref|ZP_19085081.1| RNase H family protein [Escherichia coli 96.0428]
gi|429023934|ref|ZP_19090379.1| RNase H family protein [Escherichia coli 96.0427]
gi|429030235|ref|ZP_19096139.1| RNase H family protein [Escherichia coli 96.0939]
gi|429036391|ref|ZP_19101864.1| RNase H family protein [Escherichia coli 96.0932]
gi|429042420|ref|ZP_19107452.1| RNase H family protein [Escherichia coli 96.0107]
gi|429048189|ref|ZP_19112856.1| RNase H family protein [Escherichia coli 97.0003]
gi|429053546|ref|ZP_19118060.1| RNase H family protein [Escherichia coli 97.1742]
gi|429059253|ref|ZP_19123422.1| RNase H family protein [Escherichia coli 97.0007]
gi|429064637|ref|ZP_19128532.1| RNase H family protein [Escherichia coli 99.0672]
gi|429071253|ref|ZP_19134620.1| ribonuclease H [Escherichia coli 99.0678]
gi|429076483|ref|ZP_19139712.1| RNase H family protein [Escherichia coli 99.0713]
gi|429823701|ref|ZP_19355252.1| RNase H family protein [Escherichia coli 96.0109]
gi|429830074|ref|ZP_19360983.1| RNase H family protein [Escherichia coli 97.0010]
gi|432351842|ref|ZP_19595155.1| ribonuclease H [Escherichia coli KTE2]
gi|432356570|ref|ZP_19599817.1| ribonuclease H [Escherichia coli KTE4]
gi|432360993|ref|ZP_19604190.1| ribonuclease H [Escherichia coli KTE5]
gi|432368202|ref|ZP_19611309.1| ribonuclease H [Escherichia coli KTE10]
gi|432375300|ref|ZP_19618316.1| ribonuclease HI [Escherichia coli KTE12]
gi|432390104|ref|ZP_19632969.1| ribonuclease H [Escherichia coli KTE21]
gi|432396066|ref|ZP_19638858.1| ribonuclease H [Escherichia coli KTE25]
gi|432400289|ref|ZP_19643050.1| ribonuclease HI [Escherichia coli KTE26]
gi|432405098|ref|ZP_19647821.1| ribonuclease H [Escherichia coli KTE28]
gi|432415162|ref|ZP_19657796.1| ribonuclease H [Escherichia coli KTE44]
gi|432429320|ref|ZP_19671785.1| ribonuclease H [Escherichia coli KTE181]
gi|432459149|ref|ZP_19701316.1| ribonuclease H [Escherichia coli KTE204]
gi|432464202|ref|ZP_19706314.1| ribonuclease H [Escherichia coli KTE205]
gi|432474206|ref|ZP_19716222.1| ribonuclease HI [Escherichia coli KTE208]
gi|432479571|ref|ZP_19721536.1| ribonuclease H [Escherichia coli KTE210]
gi|432483853|ref|ZP_19725781.1| ribonuclease HI [Escherichia coli KTE212]
gi|432492513|ref|ZP_19734357.1| ribonuclease H [Escherichia coli KTE213]
gi|432520858|ref|ZP_19758028.1| ribonuclease H [Escherichia coli KTE228]
gi|432529510|ref|ZP_19766568.1| ribonuclease H [Escherichia coli KTE233]
gi|432532424|ref|ZP_19769431.1| ribonuclease H [Escherichia coli KTE234]
gi|432541031|ref|ZP_19777911.1| ribonuclease HI [Escherichia coli KTE235]
gi|432541594|ref|ZP_19778455.1| ribonuclease H [Escherichia coli KTE236]
gi|432546932|ref|ZP_19783731.1| ribonuclease H [Escherichia coli KTE237]
gi|432562131|ref|ZP_19798763.1| ribonuclease H [Escherichia coli KTE51]
gi|432572234|ref|ZP_19808726.1| ribonuclease H [Escherichia coli KTE55]
gi|432582298|ref|ZP_19818711.1| ribonuclease H [Escherichia coli KTE57]
gi|432586539|ref|ZP_19822911.1| ribonuclease H [Escherichia coli KTE58]
gi|432596109|ref|ZP_19832398.1| ribonuclease H [Escherichia coli KTE62]
gi|432600720|ref|ZP_19836976.1| ribonuclease HI [Escherichia coli KTE66]
gi|432615011|ref|ZP_19851148.1| ribonuclease H [Escherichia coli KTE75]
gi|432620318|ref|ZP_19856366.1| ribonuclease H [Escherichia coli KTE76]
gi|432625769|ref|ZP_19861757.1| ribonuclease H [Escherichia coli KTE77]
gi|432629743|ref|ZP_19865700.1| ribonuclease H [Escherichia coli KTE80]
gi|432635528|ref|ZP_19871418.1| ribonuclease H [Escherichia coli KTE81]
gi|432639287|ref|ZP_19875136.1| ribonuclease H [Escherichia coli KTE83]
gi|432659476|ref|ZP_19895141.1| ribonuclease HI [Escherichia coli KTE111]
gi|432664366|ref|ZP_19899967.1| ribonuclease H [Escherichia coli KTE116]
gi|432669033|ref|ZP_19904586.1| ribonuclease H [Escherichia coli KTE119]
gi|432677806|ref|ZP_19913236.1| ribonuclease H [Escherichia coli KTE142]
gi|432678626|ref|ZP_19914030.1| ribonuclease HI [Escherichia coli KTE143]
gi|432684090|ref|ZP_19919412.1| ribonuclease H [Escherichia coli KTE156]
gi|432690094|ref|ZP_19925344.1| ribonuclease H [Escherichia coli KTE161]
gi|432702753|ref|ZP_19937884.1| ribonuclease HI [Escherichia coli KTE171]
gi|432721812|ref|ZP_19956740.1| ribonuclease H [Escherichia coli KTE17]
gi|432726307|ref|ZP_19961190.1| ribonuclease H [Escherichia coli KTE18]
gi|432735673|ref|ZP_19970465.1| ribonuclease H [Escherichia coli KTE42]
gi|432739989|ref|ZP_19974711.1| ribonuclease HI [Escherichia coli KTE23]
gi|432748591|ref|ZP_19983219.1| ribonuclease H [Escherichia coli KTE29]
gi|432753037|ref|ZP_19987606.1| ribonuclease H [Escherichia coli KTE22]
gi|432769018|ref|ZP_20003396.1| ribonuclease H [Escherichia coli KTE50]
gi|432773365|ref|ZP_20007666.1| ribonuclease HI [Escherichia coli KTE54]
gi|432777093|ref|ZP_20011348.1| ribonuclease H [Escherichia coli KTE59]
gi|432785887|ref|ZP_20020055.1| ribonuclease HI [Escherichia coli KTE65]
gi|432791439|ref|ZP_20025533.1| ribonuclease HI [Escherichia coli KTE78]
gi|432797406|ref|ZP_20031434.1| ribonuclease HI [Escherichia coli KTE79]
gi|432804262|ref|ZP_20038208.1| ribonuclease HI [Escherichia coli KTE91]
gi|432813719|ref|ZP_20047530.1| ribonuclease H [Escherichia coli KTE115]
gi|432819560|ref|ZP_20053274.1| ribonuclease HI [Escherichia coli KTE118]
gi|432825688|ref|ZP_20059345.1| ribonuclease H [Escherichia coli KTE123]
gi|432830186|ref|ZP_20063795.1| ribonuclease H [Escherichia coli KTE135]
gi|432833312|ref|ZP_20066860.1| ribonuclease H [Escherichia coli KTE136]
gi|432837769|ref|ZP_20071264.1| ribonuclease H [Escherichia coli KTE140]
gi|432872805|ref|ZP_20092568.1| ribonuclease H [Escherichia coli KTE147]
gi|432879490|ref|ZP_20096492.1| ribonuclease H [Escherichia coli KTE154]
gi|432883941|ref|ZP_20099103.1| ribonuclease H [Escherichia coli KTE158]
gi|432892847|ref|ZP_20104952.1| ribonuclease H [Escherichia coli KTE165]
gi|432909766|ref|ZP_20117039.1| ribonuclease H [Escherichia coli KTE190]
gi|432932518|ref|ZP_20132372.1| ribonuclease H [Escherichia coli KTE184]
gi|432944780|ref|ZP_20141185.1| ribonuclease H [Escherichia coli KTE196]
gi|432952969|ref|ZP_20145610.1| ribonuclease H [Escherichia coli KTE197]
gi|432959319|ref|ZP_20149890.1| ribonuclease H [Escherichia coli KTE202]
gi|432966350|ref|ZP_20155270.1| ribonuclease HI [Escherichia coli KTE203]
gi|432989303|ref|ZP_20177973.1| ribonuclease HI [Escherichia coli KTE217]
gi|433003752|ref|ZP_20192190.1| ribonuclease H [Escherichia coli KTE227]
gi|433010958|ref|ZP_20199363.1| ribonuclease H [Escherichia coli KTE229]
gi|433017183|ref|ZP_20205458.1| ribonuclease H [Escherichia coli KTE105]
gi|433041706|ref|ZP_20229243.1| ribonuclease H [Escherichia coli KTE117]
gi|433046260|ref|ZP_20233702.1| ribonuclease H [Escherichia coli KTE120]
gi|433051424|ref|ZP_20238672.1| ribonuclease H [Escherichia coli KTE122]
gi|433061417|ref|ZP_20248390.1| ribonuclease H [Escherichia coli KTE125]
gi|433066330|ref|ZP_20253184.1| ribonuclease H [Escherichia coli KTE128]
gi|433071123|ref|ZP_20257838.1| ribonuclease HI [Escherichia coli KTE129]
gi|433090560|ref|ZP_20276870.1| ribonuclease H [Escherichia coli KTE138]
gi|433109390|ref|ZP_20295273.1| ribonuclease H [Escherichia coli KTE150]
gi|433118689|ref|ZP_20304410.1| ribonuclease H [Escherichia coli KTE157]
gi|433128498|ref|ZP_20313984.1| ribonuclease H [Escherichia coli KTE163]
gi|433133400|ref|ZP_20318784.1| ribonuclease HI [Escherichia coli KTE166]
gi|433152346|ref|ZP_20337319.1| ribonuclease H [Escherichia coli KTE176]
gi|433157147|ref|ZP_20342029.1| ribonuclease H [Escherichia coli KTE177]
gi|433161992|ref|ZP_20346761.1| ribonuclease HI [Escherichia coli KTE179]
gi|433166928|ref|ZP_20351613.1| ribonuclease H [Escherichia coli KTE180]
gi|433171976|ref|ZP_20356545.1| ribonuclease H [Escherichia coli KTE232]
gi|433176570|ref|ZP_20361049.1| ribonuclease H [Escherichia coli KTE82]
gi|433181654|ref|ZP_20365963.1| ribonuclease H [Escherichia coli KTE85]
gi|433192000|ref|ZP_20376031.1| ribonuclease H [Escherichia coli KTE90]
gi|433201650|ref|ZP_20385466.1| ribonuclease H [Escherichia coli KTE95]
gi|442589894|ref|ZP_21008691.1| Ribonuclease HI [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442596073|ref|ZP_21013899.1| Ribonuclease HI [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|443616222|ref|YP_007380078.1| RNase HI [Escherichia coli APEC O78]
gi|444922416|ref|ZP_21242174.1| RNase H family protein [Escherichia coli 09BKT078844]
gi|444928727|ref|ZP_21247898.1| RNase H family protein [Escherichia coli 99.0814]
gi|444934132|ref|ZP_21253094.1| RNase H family protein [Escherichia coli 99.0815]
gi|444939702|ref|ZP_21258370.1| RNase H family protein [Escherichia coli 99.0816]
gi|444945264|ref|ZP_21263701.1| RNase H family protein [Escherichia coli 99.0839]
gi|444950817|ref|ZP_21269060.1| RNase H family protein [Escherichia coli 99.0848]
gi|444956294|ref|ZP_21274315.1| RNase H family protein [Escherichia coli 99.1753]
gi|444961637|ref|ZP_21279408.1| RNase H family protein [Escherichia coli 99.1775]
gi|444967357|ref|ZP_21284841.1| RNase H family protein [Escherichia coli 99.1793]
gi|444972859|ref|ZP_21290162.1| RNase H family protein [Escherichia coli 99.1805]
gi|444978367|ref|ZP_21295374.1| RNase H family protein [Escherichia coli ATCC 700728]
gi|444983690|ref|ZP_21300565.1| RNase H family protein [Escherichia coli PA11]
gi|444988640|ref|ZP_21305393.1| RNase H family protein [Escherichia coli PA19]
gi|444994244|ref|ZP_21310854.1| RNase H family protein [Escherichia coli PA13]
gi|444999767|ref|ZP_21316240.1| RNase H family protein [Escherichia coli PA2]
gi|445005222|ref|ZP_21321575.1| RNase H family protein [Escherichia coli PA47]
gi|445010401|ref|ZP_21326606.1| RNase H family protein [Escherichia coli PA48]
gi|445016163|ref|ZP_21332223.1| RNase H family protein [Escherichia coli PA8]
gi|445021635|ref|ZP_21337568.1| RNase H family protein [Escherichia coli 7.1982]
gi|445026879|ref|ZP_21342667.1| RNase H family protein [Escherichia coli 99.1781]
gi|445032351|ref|ZP_21347988.1| RNase H family protein [Escherichia coli 99.1762]
gi|445038049|ref|ZP_21353531.1| RNase H family protein [Escherichia coli PA35]
gi|445043219|ref|ZP_21358567.1| RNase H family protein [Escherichia coli 3.4880]
gi|445048867|ref|ZP_21364049.1| RNase H family protein [Escherichia coli 95.0083]
gi|445054491|ref|ZP_21369452.1| RNase H family protein [Escherichia coli 99.0670]
gi|450185275|ref|ZP_21888992.1| RNase HI [Escherichia coli SEPT362]
gi|450209940|ref|ZP_21893998.1| RNase HI [Escherichia coli O08]
gi|450238512|ref|ZP_21898905.1| RNase HI [Escherichia coli S17]
gi|452967196|ref|ZP_21965423.1| ribonuclease H [Escherichia coli O157:H7 str. EC4009]
gi|67472286|sp|P0A7Y4.1|RNH_ECOLI RecName: Full=Ribonuclease HI; Short=RNase HI; AltName:
Full=Ribonuclease H; Short=RNase H
gi|67472287|sp|P0A7Y5.1|RNH_ECOL6 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|67472288|sp|P0A7Y6.1|RNH_ECO57 RecName: Full=Ribonuclease HI; Short=RNase HI
gi|67472289|sp|P0A7Y7.1|RNH_SHIFL RecName: Full=Ribonuclease HI; Short=RNase HI
gi|123560512|sp|Q325T2.1|RNH_SHIBS RecName: Full=Ribonuclease H; Short=RNase H
gi|123563454|sp|Q32JP9.1|RNH_SHIDS RecName: Full=Ribonuclease H; Short=RNase H
gi|123732410|sp|Q3Z5E9.1|RNH_SHISS RecName: Full=Ribonuclease H; Short=RNase H
gi|189043687|sp|A7ZHV1.1|RNH_ECO24 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043689|sp|B1IPU4.1|RNH_ECOLC RecName: Full=Ribonuclease H; Short=RNase H
gi|226736830|sp|B7MBJ0.1|RNH_ECO45 RecName: Full=Ribonuclease H; Short=RNase H
gi|226736831|sp|B7NKW4.1|RNH_ECO7I RecName: Full=Ribonuclease H; Short=RNase H
gi|226736832|sp|B7M213.1|RNH_ECO8A RecName: Full=Ribonuclease H; Short=RNase H
gi|226736833|sp|B7N876.1|RNH_ECOLU RecName: Full=Ribonuclease H; Short=RNase H
gi|226736834|sp|B1LHM3.1|RNH_ECOSM RecName: Full=Ribonuclease H; Short=RNase H
gi|226736835|sp|B7LW89.1|RNH_ESCF3 RecName: Full=Ribonuclease H; Short=RNase H
gi|229564306|sp|B1XD78.1|RNH_ECODH RecName: Full=Ribonuclease H; Short=RNase H
gi|238056787|sp|B5Z0I8.1|RNH_ECO5E RecName: Full=Ribonuclease H; Short=RNase H
gi|238056788|sp|B6HZS7.1|RNH_ECOSE RecName: Full=Ribonuclease H; Short=RNase H
gi|238689502|sp|B2U352.1|RNH_SHIB3 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808026|sp|B7MQ23.1|RNH_ECO81 RecName: Full=Ribonuclease H; Short=RNase H
gi|259494078|sp|C4ZRV1.1|RNH_ECOBW RecName: Full=Ribonuclease H; Short=RNase H
gi|157833653|pdb|1RCH|A Chain A, Solution Nmr Structure Of Ribonuclease Hi From Escherichia
Coli, 8 Structures
gi|157833661|pdb|1RDD|A Chain A, Crystal Structure Of Escherichia Coli Rnase Hi In Complex
With Mg2+ At 2.8 Angstroms Resolution: Proof For A
Single Mg2+ Site
gi|157836338|pdb|2RN2|A Chain A, Structural Details Of Ribonuclease H From Escherichia Coli
As Refined To An Atomic Resolution
gi|12512942|gb|AAG54510.1|AE005196_8 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli O157:H7 str. EDL933]
gi|42062|emb|CAA27660.1| unnamed protein product [Escherichia coli]
gi|42777|emb|CAA23620.1| ribonuclease H [Escherichia coli]
gi|147680|gb|AAA24565.1| ribonuclease H [Escherichia coli]
gi|1552784|gb|AAB08636.1| ribonuclease H [Escherichia coli]
gi|1786408|gb|AAC73319.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|4902951|dbj|BAA77885.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K12 substr. W3110]
gi|13359666|dbj|BAB33633.1| RNase HI [Escherichia coli O157:H7 str. Sakai]
gi|30040008|gb|AAP15742.1| RNase HI [Shigella flexneri 2a str. 2457T]
gi|73854306|gb|AAZ87013.1| RNase HI [Shigella sonnei Ss046]
gi|81239748|gb|ABB60458.1| RNase HI [Shigella dysenteriae Sd197]
gi|81244218|gb|ABB64926.1| RNase HI [Shigella boydii Sb227]
gi|157078123|gb|ABV17831.1| ribonuclease H [Escherichia coli E24377A]
gi|169756366|gb|ACA79065.1| Ribonuclease H [Escherichia coli ATCC 8739]
gi|169887680|gb|ACB01387.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. DH10B]
gi|170520252|gb|ACB18430.1| ribonuclease H [Escherichia coli SMS-3-5]
gi|187427552|gb|ACD06826.1| ribonuclease H [Shigella boydii CDC 3083-94]
gi|187768426|gb|EDU32270.1| ribonuclease H [Escherichia coli O157:H7 str. EC4196]
gi|188015545|gb|EDU53667.1| ribonuclease H [Escherichia coli O157:H7 str. EC4113]
gi|188491136|gb|EDU66239.1| ribonuclease H [Escherichia coli 53638]
gi|188999616|gb|EDU68602.1| ribonuclease H [Escherichia coli O157:H7 str. EC4076]
gi|189355700|gb|EDU74119.1| ribonuclease H [Escherichia coli O157:H7 str. EC4401]
gi|189361084|gb|EDU79503.1| ribonuclease H [Escherichia coli O157:H7 str. EC4486]
gi|189366386|gb|EDU84802.1| ribonuclease H [Escherichia coli O157:H7 str. EC4501]
gi|189370760|gb|EDU89176.1| ribonuclease H [Escherichia coli O157:H7 str. EC869]
gi|189377335|gb|EDU95751.1| ribonuclease H [Escherichia coli O157:H7 str. EC508]
gi|190902905|gb|EDV62632.1| ribonuclease H [Escherichia coli B7A]
gi|192958987|gb|EDV89423.1| ribonuclease H [Escherichia coli E110019]
gi|194422876|gb|EDX38871.1| ribonuclease H [Escherichia coli 101-1]
gi|208728093|gb|EDZ77694.1| ribonuclease H [Escherichia coli O157:H7 str. EC4206]
gi|208733274|gb|EDZ81961.1| ribonuclease H [Escherichia coli O157:H7 str. EC4045]
gi|208740821|gb|EDZ88503.1| ribonuclease H [Escherichia coli O157:H7 str. EC4042]
gi|209157574|gb|ACI35007.1| ribonuclease H [Escherichia coli O157:H7 str. EC4115]
gi|209745484|gb|ACI71049.1| RNase HI [Escherichia coli]
gi|209745486|gb|ACI71050.1| RNase HI [Escherichia coli]
gi|209745488|gb|ACI71051.1| RNase HI [Escherichia coli]
gi|209745490|gb|ACI71052.1| RNase HI [Escherichia coli]
gi|209745492|gb|ACI71053.1| RNase HI [Escherichia coli]
gi|209910660|dbj|BAG75734.1| ribonuclease H [Escherichia coli SE11]
gi|217320470|gb|EEC28894.1| ribonuclease H [Escherichia coli O157:H7 str. TW14588]
gi|218355205|emb|CAQ87812.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia
fergusonii ATCC 35469]
gi|218359557|emb|CAQ97097.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
IAI1]
gi|218363919|emb|CAR01584.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
S88]
gi|218368825|emb|CAR16573.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
IAI39]
gi|218425648|emb|CAR06435.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
ED1a]
gi|218430560|emb|CAR11426.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
UMN026]
gi|238863469|gb|ACR65467.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
BW2952]
gi|242376044|emb|CAQ30729.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli BL21(DE3)]
gi|253325808|gb|ACT30410.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972229|gb|ACT37900.1| ribonuclease H [Escherichia coli B str. REL606]
gi|253976438|gb|ACT42108.1| ribonuclease H [Escherichia coli BL21(DE3)]
gi|254590741|gb|ACT70102.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O157:H7 str. TW14359]
gi|257752068|dbj|BAI23570.1| ribonuclease HI [Escherichia coli O26:H11 str. 11368]
gi|257762713|dbj|BAI34208.1| ribonuclease HI [Escherichia coli O111:H- str. 11128]
gi|260450589|gb|ACX41011.1| Ribonuclease H [Escherichia coli DH1]
gi|284919984|emb|CBG33039.1| ribonuclease HI [Escherichia coli 042]
gi|290760904|gb|ADD54865.1| RNase HI [Escherichia coli O55:H7 str. CB9615]
gi|291324836|gb|EFE64251.1| ribonuclease HI [Escherichia coli B088]
gi|291429146|gb|EFF02166.1| rnhA [Escherichia coli FVEC1412]
gi|291433527|gb|EFF06500.1| ribonuclease HI [Escherichia coli B185]
gi|291471481|gb|EFF13964.1| ribonuclease HI [Escherichia coli B354]
gi|294493120|gb|ADE91876.1| ribonuclease H [Escherichia coli IHE3034]
gi|298280020|gb|EFI21524.1| ribonuclease H [Escherichia coli FVEC1302]
gi|299877468|gb|EFI85679.1| ribonuclease HI [Escherichia coli MS 196-1]
gi|300356435|gb|EFJ72305.1| ribonuclease HI [Escherichia coli MS 198-1]
gi|300398082|gb|EFJ81620.1| ribonuclease HI [Escherichia coli MS 69-1]
gi|300402535|gb|EFJ86073.1| ribonuclease HI [Escherichia coli MS 84-1]
gi|300413744|gb|EFJ97054.1| ribonuclease HI [Escherichia coli MS 115-1]
gi|300417424|gb|EFK00735.1| ribonuclease HI [Escherichia coli MS 182-1]
gi|300451237|gb|EFK14857.1| ribonuclease HI [Escherichia coli MS 116-1]
gi|301076260|gb|EFK91066.1| ribonuclease HI [Escherichia coli MS 146-1]
gi|306905815|gb|EFN36340.1| Ribonuclease H [Escherichia coli W]
gi|307628304|gb|ADN72608.1| ribonuclease H [Escherichia coli UM146]
gi|308924689|gb|EFP70184.1| ribonuclease H [Shigella dysenteriae 1617]
gi|309700416|emb|CBI99705.1| ribonuclease HI [Escherichia coli ETEC H10407]
gi|310336961|gb|EFQ02099.1| ribonuclease H [Escherichia coli 1827-70]
gi|313646729|gb|EFS11188.1| ribonuclease H [Shigella flexneri 2a str. 2457T]
gi|315059427|gb|ADT73754.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
W]
gi|315134899|dbj|BAJ42058.1| ribonuclease H [Escherichia coli DH1]
gi|315289702|gb|EFU49095.1| ribonuclease HI [Escherichia coli MS 110-3]
gi|315616888|gb|EFU97505.1| ribonuclease H [Escherichia coli 3431]
gi|320173694|gb|EFW48883.1| Ribonuclease HI [Shigella dysenteriae CDC 74-1112]
gi|320179851|gb|EFW54797.1| Ribonuclease HI [Shigella boydii ATCC 9905]
gi|320186398|gb|EFW61130.1| Ribonuclease HI [Shigella flexneri CDC 796-83]
gi|320190265|gb|EFW64915.1| Ribonuclease HI [Escherichia coli O157:H7 str. EC1212]
gi|320638234|gb|EFX07962.1| ribonuclease H [Escherichia coli O157:H7 str. G5101]
gi|320643618|gb|EFX12762.1| ribonuclease H [Escherichia coli O157:H- str. 493-89]
gi|320650354|gb|EFX18831.1| ribonuclease H [Escherichia coli O157:H- str. H 2687]
gi|320654629|gb|EFX22630.1| ribonuclease H [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660197|gb|EFX27707.1| ribonuclease H [Escherichia coli O55:H7 str. USDA 5905]
gi|320665448|gb|EFX32510.1| ribonuclease H [Escherichia coli O157:H7 str. LSU-61]
gi|323157951|gb|EFZ44053.1| ribonuclease H [Escherichia coli EPECa14]
gi|323176526|gb|EFZ62118.1| ribonuclease H [Escherichia coli OK1180]
gi|323181626|gb|EFZ67041.1| ribonuclease H [Escherichia coli OK1357]
gi|323380014|gb|ADX52282.1| Ribonuclease H [Escherichia coli KO11FL]
gi|323938757|gb|EGB35003.1| RNase H [Escherichia coli E1520]
gi|323943405|gb|EGB39557.1| RNase H [Escherichia coli E482]
gi|323945582|gb|EGB41632.1| RNase H [Escherichia coli H120]
gi|323948752|gb|EGB44652.1| RNase H [Escherichia coli H252]
gi|323958798|gb|EGB54497.1| RNase H [Escherichia coli H263]
gi|323963577|gb|EGB59134.1| RNase H [Escherichia coli H489]
gi|323972506|gb|EGB67712.1| RNase H [Escherichia coli TA007]
gi|323975919|gb|EGB71014.1| RNase H [Escherichia coli TW10509]
gi|324020674|gb|EGB89893.1| ribonuclease HI [Escherichia coli MS 117-3]
gi|324111224|gb|EGC05207.1| RNase H [Escherichia fergusonii B253]
gi|324115458|gb|EGC09400.1| RNase H [Escherichia coli E1167]
gi|325496140|gb|EGC93999.1| ribonuclease H [Escherichia fergusonii ECD227]
gi|326338810|gb|EGD62629.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1044]
gi|326342398|gb|EGD66178.1| Ribonuclease HI [Escherichia coli O157:H7 str. 1125]
gi|330910060|gb|EGH38570.1| ribonuclease H1 [Escherichia coli AA86]
gi|331060007|gb|EGI31971.1| ribonuclease HI [Escherichia coli TA143]
gi|331066300|gb|EGI38178.1| ribonuclease HI [Escherichia coli TA271]
gi|332093750|gb|EGI98805.1| ribonuclease H [Shigella boydii 3594-74]
gi|332341542|gb|AEE54876.1| ribonuclease HI RnhA [Escherichia coli UMNK88]
gi|332754110|gb|EGJ84480.1| ribonuclease H [Shigella flexneri 2747-71]
gi|332761997|gb|EGJ92269.1| ribonuclease H [Shigella flexneri 4343-70]
gi|332764638|gb|EGJ94868.1| ribonuclease H [Shigella flexneri K-671]
gi|332768613|gb|EGJ98794.1| ribonuclease HI [Shigella flexneri 2930-71]
gi|333009001|gb|EGK28460.1| ribonuclease H [Shigella flexneri K-218]
gi|333009687|gb|EGK29137.1| ribonuclease H [Shigella flexneri VA-6]
gi|333010754|gb|EGK30180.1| ribonuclease H [Shigella flexneri K-272]
gi|333021253|gb|EGK40506.1| ribonuclease H [Shigella flexneri K-227]
gi|333022172|gb|EGK41412.1| ribonuclease H [Shigella flexneri K-304]
gi|335578208|gb|EGM63433.1| ribonuclease HI [Shigella flexneri J1713]
gi|338771680|gb|EGP26415.1| Ribonuclease H [Escherichia coli PCN033]
gi|339413196|gb|AEJ54868.1| ribonuclease H (RNase H) [Escherichia coli UMNF18]
gi|342361465|gb|EGU25603.1| ribonuclease H [Escherichia coli XH140A]
gi|344192188|gb|EGV46285.1| ribonuclease H [Escherichia coli XH001]
gi|345341879|gb|EGW74278.1| ribonuclease H [Escherichia coli STEC_C165-02]
gi|345344399|gb|EGW76768.1| ribonuclease H [Escherichia coli STEC_B2F1]
gi|345346189|gb|EGW78525.1| ribonuclease H [Escherichia coli 2534-86]
gi|345354378|gb|EGW86602.1| ribonuclease H [Escherichia coli STEC_94C]
gi|345366210|gb|EGW98306.1| ribonuclease H [Escherichia coli STEC_DG131-3]
gi|345366309|gb|EGW98400.1| ribonuclease H [Escherichia coli STEC_EH250]
gi|345378683|gb|EGX10608.1| ribonuclease H [Escherichia coli STEC_MHI813]
gi|345382590|gb|EGX13464.1| ribonuclease H [Escherichia coli G58-1]
gi|345391377|gb|EGX21169.1| ribonuclease H [Escherichia coli STEC_S1191]
gi|345395797|gb|EGX25535.1| ribonuclease H [Escherichia coli TX1999]
gi|349736360|gb|AEQ11066.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O7:K1 str. CE10]
gi|355353348|gb|EHG02517.1| ribonuclease H [Escherichia coli cloneA_i1]
gi|359331067|dbj|BAL37514.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MDS42]
gi|371592317|gb|EHN81227.1| ribonuclease H [Escherichia coli TA124]
gi|371598254|gb|EHN87064.1| ribonuclease H [Escherichia coli H494]
gi|371612113|gb|EHO00630.1| ribonuclease H [Escherichia coli H397]
gi|371613420|gb|EHO01919.1| ribonuclease H [Escherichia coli E101]
gi|371616095|gb|EHO04467.1| ribonuclease H [Escherichia coli B093]
gi|373243486|gb|EHP62991.1| ribonuclease H [Escherichia coli 4_1_47FAA]
gi|374357130|gb|AEZ38837.1| ribonuclease H [Escherichia coli O55:H7 str. RM12579]
gi|375321858|gb|EHS67657.1| ribonuclease H [Escherichia coli O157:H43 str. T22]
gi|377897009|gb|EHU61397.1| ribonuclease HI [Escherichia coli DEC3A]
gi|377900301|gb|EHU64634.1| ribonuclease HI [Escherichia coli DEC3B]
gi|377902237|gb|EHU66543.1| ribonuclease HI [Escherichia coli DEC3C]
gi|377919477|gb|EHU83519.1| ribonuclease HI [Escherichia coli DEC3D]
gi|377921190|gb|EHU85193.1| ribonuclease HI [Escherichia coli DEC3E]
gi|377923079|gb|EHU87048.1| ribonuclease HI [Escherichia coli DEC4B]
gi|377934139|gb|EHU97976.1| ribonuclease HI [Escherichia coli DEC4A]
gi|377934215|gb|EHU98049.1| ribonuclease HI [Escherichia coli DEC3F]
gi|377946036|gb|EHV09725.1| ribonuclease HI [Escherichia coli DEC4C]
gi|377951718|gb|EHV15332.1| ribonuclease HI [Escherichia coli DEC4D]
gi|377955851|gb|EHV19404.1| ribonuclease HI [Escherichia coli DEC4E]
gi|377965823|gb|EHV29236.1| ribonuclease HI [Escherichia coli DEC5A]
gi|377967105|gb|EHV30511.1| ribonuclease HI [Escherichia coli DEC4F]
gi|377973870|gb|EHV37200.1| ribonuclease HI [Escherichia coli DEC5B]
gi|377982089|gb|EHV45342.1| ribonuclease HI [Escherichia coli DEC5D]
gi|377983173|gb|EHV46418.1| ribonuclease HI [Escherichia coli DEC5C]
gi|377988290|gb|EHV51468.1| ribonuclease HI [Escherichia coli DEC5E]
gi|378000002|gb|EHV63076.1| ribonuclease HI [Escherichia coli DEC6A]
gi|378001971|gb|EHV65026.1| ribonuclease HI [Escherichia coli DEC6B]
gi|378004026|gb|EHV67059.1| ribonuclease HI [Escherichia coli DEC6C]
gi|378015392|gb|EHV78288.1| ribonuclease HI [Escherichia coli DEC6D]
gi|378016941|gb|EHV79816.1| ribonuclease HI [Escherichia coli DEC6E]
gi|378019464|gb|EHV82295.1| ribonuclease HI [Escherichia coli DEC7A]
gi|378019828|gb|EHV82628.1| ribonuclease HI [Escherichia coli DEC7C]
gi|378034317|gb|EHV96883.1| ribonuclease HI [Escherichia coli DEC7D]
gi|378038184|gb|EHW00701.1| ribonuclease HI [Escherichia coli DEC7B]
gi|378040183|gb|EHW02656.1| ribonuclease HI [Escherichia coli DEC8B]
gi|378043022|gb|EHW05461.1| ribonuclease HI [Escherichia coli DEC7E]
gi|378054176|gb|EHW16459.1| ribonuclease HI [Escherichia coli DEC8A]
gi|378063845|gb|EHW26008.1| ribonuclease HI [Escherichia coli DEC8C]
gi|378069632|gb|EHW31721.1| ribonuclease HI [Escherichia coli DEC8D]
gi|378073351|gb|EHW35403.1| ribonuclease HI [Escherichia coli DEC8E]
gi|378082877|gb|EHW44818.1| ribonuclease HI [Escherichia coli DEC9A]
gi|378083321|gb|EHW45255.1| ribonuclease HI [Escherichia coli DEC9B]
gi|378091089|gb|EHW52922.1| ribonuclease HI [Escherichia coli DEC9C]
gi|378095370|gb|EHW57157.1| ribonuclease HI [Escherichia coli DEC9D]
gi|378097237|gb|EHW58994.1| ribonuclease HI [Escherichia coli DEC10A]
gi|378103697|gb|EHW65362.1| ribonuclease HI [Escherichia coli DEC9E]
gi|378106899|gb|EHW68526.1| ribonuclease HI [Escherichia coli DEC10C]
gi|378118160|gb|EHW79668.1| ribonuclease HI [Escherichia coli DEC10B]
gi|378121430|gb|EHW82881.1| ribonuclease HI [Escherichia coli DEC10D]
gi|378140491|gb|EHX01715.1| ribonuclease HI [Escherichia coli DEC10F]
gi|378223136|gb|EHX83365.1| ribonuclease HI [Escherichia coli DEC14A]
gi|378246070|gb|EHY06006.1| ribonuclease HI [Escherichia coli DEC15A]
gi|378248612|gb|EHY08525.1| ribonuclease HI [Escherichia coli DEC15C]
gi|378252322|gb|EHY12215.1| ribonuclease HI [Escherichia coli DEC15B]
gi|378257721|gb|EHY17557.1| ribonuclease HI [Escherichia coli DEC15D]
gi|378261515|gb|EHY21308.1| ribonuclease HI [Escherichia coli DEC15E]
gi|383101575|gb|AFG39084.1| RNase HI [Escherichia coli P12b]
gi|383390234|gb|AFH15192.1| ribonuclease H [Escherichia coli KO11FL]
gi|383403629|gb|AFH09872.1| ribonuclease H [Escherichia coli W]
gi|384377352|gb|EIE35246.1| ribonuclease HI [Escherichia coli J53]
gi|384470801|gb|EIE54897.1| ribonuclease HI [Escherichia coli AI27]
gi|385156121|gb|EIF18120.1| ribonuclease H [Escherichia coli O32:H37 str. P4]
gi|385540300|gb|EIF87122.1| ribonuclease H [Escherichia coli M919]
gi|385705001|gb|EIG42070.1| ribonuclease H [Escherichia coli B799]
gi|385713477|gb|EIG50409.1| ribonuclease H [Escherichia coli H730]
gi|386145036|gb|EIG91500.1| ribonuclease HI [Escherichia coli 97.0246]
gi|386152857|gb|EIH04146.1| ribonuclease HI [Escherichia coli 5.0588]
gi|386159495|gb|EIH15821.1| ribonuclease HI [Escherichia coli 97.0259]
gi|386169244|gb|EIH35752.1| ribonuclease HI [Escherichia coli 96.0497]
gi|386191895|gb|EIH80636.1| ribonuclease HI [Escherichia coli 4.0522]
gi|386193404|gb|EIH87688.1| ribonuclease HI [Escherichia coli JB1-95]
gi|386200009|gb|EIH99000.1| ribonuclease HI [Escherichia coli 96.154]
gi|386206513|gb|EII11019.1| ribonuclease HI [Escherichia coli 5.0959]
gi|386225941|gb|EII48266.1| ribonuclease HI [Escherichia coli 2.3916]
gi|386230720|gb|EII58075.1| ribonuclease HI [Escherichia coli 3.3884]
gi|386233934|gb|EII65914.1| ribonuclease HI [Escherichia coli 2.4168]
gi|386237761|gb|EII74705.1| ribonuclease HI [Escherichia coli 3.2303]
gi|386252524|gb|EIJ02215.1| ribonuclease HI [Escherichia coli B41]
gi|386261268|gb|EIJ16736.1| ribonuclease HI [Escherichia coli 900105 (10e)]
gi|386794225|gb|AFJ27259.1| ribonuclease H [Escherichia coli Xuzhou21]
gi|388335220|gb|EIL01792.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9534]
gi|388347211|gb|EIL12897.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9570]
gi|388352824|gb|EIL17910.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9545]
gi|388357057|gb|EIL21676.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9574]
gi|388367554|gb|EIL31227.1| ribonuclease H [Escherichia coli O26:H11 str. CVM9942]
gi|388371449|gb|EIL34927.1| hypothetical protein ECO10026_29509 [Escherichia coli O26:H11 str.
CVM10026]
gi|388393750|gb|EIL55105.1| ribonuclease H [Escherichia coli 541-15]
gi|388394815|gb|EIL56069.1| ribonuclease H [Escherichia coli KD2]
gi|388397995|gb|EIL58948.1| ribonuclease H [Escherichia coli 576-1]
gi|388398538|gb|EIL59421.1| ribonuclease H [Escherichia coli 75]
gi|388421491|gb|EIL81105.1| ribonuclease H [Escherichia coli HM605]
gi|388422427|gb|EIL82007.1| ribonuclease H [Escherichia coli CUMT8]
gi|390651393|gb|EIN29689.1| ribonuclease H [Escherichia coli FRIK1996]
gi|390653967|gb|EIN32042.1| ribonuclease H [Escherichia coli FDA517]
gi|390654049|gb|EIN32112.1| ribonuclease H [Escherichia coli FDA505]
gi|390670748|gb|EIN47259.1| ribonuclease H [Escherichia coli 93-001]
gi|390674552|gb|EIN50736.1| ribonuclease H [Escherichia coli FRIK1990]
gi|390675713|gb|EIN51838.1| ribonuclease H [Escherichia coli FRIK1985]
gi|390689639|gb|EIN64566.1| ribonuclease H [Escherichia coli PA3]
gi|390693233|gb|EIN67870.1| ribonuclease H [Escherichia coli PA9]
gi|390694450|gb|EIN69023.1| ribonuclease H [Escherichia coli PA5]
gi|390709410|gb|EIN82511.1| ribonuclease H [Escherichia coli PA10]
gi|390711539|gb|EIN84511.1| ribonuclease H [Escherichia coli PA15]
gi|390714631|gb|EIN87517.1| ribonuclease H [Escherichia coli PA14]
gi|390720902|gb|EIN93604.1| ribonuclease H [Escherichia coli PA22]
gi|390734648|gb|EIO06138.1| ribonuclease H [Escherichia coli PA25]
gi|390734758|gb|EIO06214.1| ribonuclease H [Escherichia coli PA24]
gi|390737979|gb|EIO09216.1| ribonuclease H [Escherichia coli PA28]
gi|390753138|gb|EIO22888.1| ribonuclease H [Escherichia coli PA31]
gi|390753451|gb|EIO23158.1| ribonuclease H [Escherichia coli PA32]
gi|390757457|gb|EIO26938.1| ribonuclease H [Escherichia coli PA33]
gi|390762768|gb|EIO32023.1| ribonuclease H [Escherichia coli PA40]
gi|390777079|gb|EIO44940.1| ribonuclease H [Escherichia coli PA41]
gi|390779902|gb|EIO47613.1| ribonuclease H [Escherichia coli PA42]
gi|390783172|gb|EIO50783.1| ribonuclease H [Escherichia coli TW06591]
gi|390787527|gb|EIO55010.1| ribonuclease H [Escherichia coli PA39]
gi|390795721|gb|EIO63003.1| ribonuclease H [Escherichia coli TW10246]
gi|390802372|gb|EIO69409.1| ribonuclease H [Escherichia coli TW11039]
gi|390811655|gb|EIO78354.1| ribonuclease H [Escherichia coli TW07945]
gi|390811726|gb|EIO78411.1| ribonuclease H [Escherichia coli TW09109]
gi|390819828|gb|EIO86153.1| ribonuclease H [Escherichia coli TW10119]
gi|390824561|gb|EIO90530.1| ribonuclease H [Escherichia coli TW09098]
gi|390837780|gb|EIP02124.1| ribonuclease H [Escherichia coli EC4203]
gi|390840786|gb|EIP04786.1| ribonuclease H [Escherichia coli TW14313]
gi|390840899|gb|EIP04887.1| ribonuclease H [Escherichia coli EC4196]
gi|390844650|gb|EIP08356.1| ribonuclease H [Escherichia coli TW09195]
gi|390856429|gb|EIP19025.1| ribonuclease H [Escherichia coli TW14301]
gi|390861316|gb|EIP23580.1| ribonuclease H [Escherichia coli EC4421]
gi|390872338|gb|EIP33653.1| ribonuclease H [Escherichia coli EC4422]
gi|390877529|gb|EIP38449.1| ribonuclease H [Escherichia coli EC4013]
gi|390887034|gb|EIP47037.1| ribonuclease H [Escherichia coli EC4402]
gi|390888759|gb|EIP48566.1| ribonuclease H [Escherichia coli EC4439]
gi|390895887|gb|EIP55295.1| ribonuclease H [Escherichia coli EC4436]
gi|390903986|gb|EIP63002.1| ribonuclease H [Escherichia coli EC1738]
gi|390912130|gb|EIP70809.1| ribonuclease H [Escherichia coli EC4437]
gi|390912309|gb|EIP70964.1| ribonuclease H [Escherichia coli EC1734]
gi|390916865|gb|EIP75300.1| ribonuclease H [Escherichia coli EC4448]
gi|390925429|gb|EIP83116.1| ribonuclease H [Escherichia coli EC1863]
gi|390926553|gb|EIP84118.1| ribonuclease H [Escherichia coli EC1845]
gi|391255042|gb|EIQ14195.1| ribonuclease HI [Shigella flexneri 2850-71]
gi|391257742|gb|EIQ16852.1| ribonuclease HI [Shigella flexneri CCH060]
gi|391260821|gb|EIQ19874.1| ribonuclease HI [Shigella flexneri K-1770]
gi|391275105|gb|EIQ33901.1| ribonuclease HI [Shigella flexneri K-404]
gi|391277515|gb|EIQ36254.1| ribonuclease HI [Shigella sonnei 3226-85]
gi|391289985|gb|EIQ48465.1| ribonuclease HI [Shigella sonnei 3233-85]
gi|391297244|gb|EIQ55302.1| ribonuclease HI [Shigella sonnei 4822-66]
gi|391307302|gb|EIQ65039.1| ribonuclease HI [Shigella dysenteriae 225-75]
gi|391310198|gb|EIQ67854.1| ribonuclease HI [Escherichia coli EPECa12]
gi|391320886|gb|EIQ77671.1| ribonuclease HI [Shigella flexneri 1235-66]
gi|394382546|gb|EJE60179.1| RNase HI [Escherichia coli O26:H11 str. CVM10224]
gi|394384028|gb|EJE61602.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9634]
gi|394385323|gb|EJE62860.1| ribonuclease H [Escherichia coli O111:H8 str. CVM9602]
gi|394398561|gb|EJE74726.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9553]
gi|394401790|gb|EJE77563.1| ribonuclease H [Escherichia coli O26:H11 str. CVM10021]
gi|394403132|gb|EJE78801.1| ribonuclease H [Escherichia coli O111:H11 str. CVM9455]
gi|394416827|gb|EJE90594.1| ribonuclease H [Escherichia coli O26:H11 str. CVM10030]
gi|394419613|gb|EJE93199.1| ribonuclease H [Escherichia coli O26:H11 str. CVM9952]
gi|397787072|gb|EJK97902.1| ribonuclease H [Escherichia coli STEC_O31]
gi|397901912|gb|EJL18251.1| ribonuclease HI [Shigella flexneri 6603-63]
gi|397903432|gb|EJL19730.1| ribonuclease HI [Shigella sonnei str. Moseley]
gi|404292972|gb|EJZ49745.1| ribonuclease H [Escherichia sp. 1_1_43]
gi|404342084|gb|EJZ68476.1| ribonuclease HI [Shigella flexneri 1485-80]
gi|408072777|gb|EKH07094.1| ribonuclease H [Escherichia coli PA7]
gi|408077105|gb|EKH11318.1| ribonuclease H [Escherichia coli FRIK920]
gi|408087074|gb|EKH20546.1| ribonuclease H [Escherichia coli PA34]
gi|408091589|gb|EKH24811.1| ribonuclease H [Escherichia coli FDA506]
gi|408097126|gb|EKH30028.1| ribonuclease H [Escherichia coli FDA507]
gi|408103536|gb|EKH35880.1| ribonuclease H [Escherichia coli FDA504]
gi|408111135|gb|EKH42905.1| ribonuclease H [Escherichia coli FRIK1999]
gi|408117240|gb|EKH48446.1| ribonuclease H [Escherichia coli FRIK1997]
gi|408122735|gb|EKH53552.1| ribonuclease H [Escherichia coli NE1487]
gi|408130910|gb|EKH60975.1| ribonuclease H [Escherichia coli NE037]
gi|408132837|gb|EKH62776.1| ribonuclease H [Escherichia coli FRIK2001]
gi|408142027|gb|EKH71433.1| ribonuclease H [Escherichia coli PA4]
gi|408150812|gb|EKH79350.1| ribonuclease H [Escherichia coli PA23]
gi|408154350|gb|EKH82702.1| ribonuclease H [Escherichia coli PA49]
gi|408159318|gb|EKH87391.1| ribonuclease H [Escherichia coli PA45]
gi|408167768|gb|EKH95250.1| ribonuclease H [Escherichia coli TT12B]
gi|408173430|gb|EKI00451.1| ribonuclease H [Escherichia coli MA6]
gi|408175402|gb|EKI02320.1| ribonuclease H [Escherichia coli 5905]
gi|408187807|gb|EKI13716.1| ribonuclease H [Escherichia coli CB7326]
gi|408193393|gb|EKI18930.1| ribonuclease H [Escherichia coli 5412]
gi|408193808|gb|EKI19325.1| ribonuclease H [Escherichia coli EC96038]
gi|408198049|gb|EKI23294.1| ribonuclease H [Escherichia coli TW15901]
gi|408206582|gb|EKI31375.1| ribonuclease H [Escherichia coli TW00353]
gi|408219542|gb|EKI43681.1| ribonuclease H [Escherichia coli 3006]
gi|408232475|gb|EKI55673.1| ribonuclease H [Escherichia coli N1]
gi|408234210|gb|EKI57238.1| ribonuclease H [Escherichia coli PA38]
gi|408240671|gb|EKI63338.1| ribonuclease H [Escherichia coli EC1735]
gi|408250156|gb|EKI72034.1| ribonuclease H [Escherichia coli EC1736]
gi|408254498|gb|EKI76016.1| ribonuclease H [Escherichia coli EC1737]
gi|408260768|gb|EKI81834.1| ribonuclease H [Escherichia coli EC1846]
gi|408269282|gb|EKI89546.1| ribonuclease H [Escherichia coli EC1847]
gi|408271130|gb|EKI91273.1| ribonuclease H [Escherichia coli EC1848]
gi|408280215|gb|EKI99786.1| ribonuclease H [Escherichia coli EC1849]
gi|408286112|gb|EKJ05062.1| ribonuclease H [Escherichia coli EC1850]
gi|408288991|gb|EKJ07775.1| ribonuclease H [Escherichia coli EC1856]
gi|408301652|gb|EKJ19229.1| ribonuclease H [Escherichia coli EC1862]
gi|408301690|gb|EKJ19254.1| ribonuclease H [Escherichia coli EC1864]
gi|408310852|gb|EKJ27892.1| ribonuclease H [Escherichia coli EC1865]
gi|408319350|gb|EKJ35491.1| ribonuclease H [Escherichia coli EC1868]
gi|408319553|gb|EKJ35687.1| ribonuclease H [Escherichia coli EC1866]
gi|408332296|gb|EKJ47349.1| ribonuclease H [Escherichia coli EC1869]
gi|408337893|gb|EKJ52575.1| ribonuclease H [Escherichia coli NE098]
gi|408339499|gb|EKJ54074.1| ribonuclease H [Escherichia coli EC1870]
gi|408348178|gb|EKJ62295.1| ribonuclease H [Escherichia coli 0.1288]
gi|408351024|gb|EKJ64834.1| ribonuclease H [Escherichia coli FRIK523]
gi|408353502|gb|EKJ67003.1| ribonuclease H [Escherichia coli 0.1304]
gi|408456840|gb|EKJ80647.1| ribonuclease HI [Escherichia coli AD30]
gi|408560145|gb|EKK36425.1| RNase H family protein [Escherichia coli 5.2239]
gi|408560189|gb|EKK36456.1| RNase H family protein [Escherichia coli 3.4870]
gi|408561338|gb|EKK37558.1| ribonuclease H [Escherichia coli 6.0172]
gi|408563174|gb|EKK39314.1| ribonuclease H [Escherichia coli 8.0566]
gi|408574182|gb|EKK49976.1| RNase H family protein [Escherichia coli 8.0569]
gi|408585947|gb|EKK60754.1| RNase H family protein [Escherichia coli 8.0586]
gi|408591866|gb|EKK66283.1| RNase H family protein [Escherichia coli 8.2524]
gi|408593252|gb|EKK67578.1| ribonuclease H [Escherichia coli 10.0833]
gi|408605365|gb|EKK78879.1| RNase H family protein [Escherichia coli 10.0869]
gi|408606199|gb|EKK79654.1| ribonuclease H [Escherichia coli 8.0416]
gi|408613319|gb|EKK86625.1| RNase H family protein [Escherichia coli 88.0221]
gi|408617964|gb|EKK91059.1| RNase H family protein [Escherichia coli 10.0821]
gi|412961465|emb|CCK45370.1| RNase HI [Escherichia coli chi7122]
gi|412968067|emb|CCJ42680.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA
replication [Escherichia coli]
gi|421934768|gb|EKT92515.1| RNase HI [Escherichia coli O111:H11 str. CFSAN001630]
gi|421937814|gb|EKT95411.1| RNase HI [Escherichia coli O111:H8 str. CFSAN001632]
gi|421938963|gb|EKT96495.1| RNase HI [Escherichia coli O26:H11 str. CFSAN001629]
gi|427215368|gb|EKV84552.1| RNase H family protein [Escherichia coli 88.1042]
gi|427218816|gb|EKV87801.1| RNase H family protein [Escherichia coli 89.0511]
gi|427218989|gb|EKV87964.1| RNase H family protein [Escherichia coli 88.1467]
gi|427235092|gb|EKW02737.1| RNase H family protein [Escherichia coli 90.2281]
gi|427235205|gb|EKW02843.1| RNase H family protein [Escherichia coli 90.0039]
gi|427237465|gb|EKW05003.1| RNase H family protein [Escherichia coli 90.0091]
gi|427252167|gb|EKW18671.1| RNase H family protein [Escherichia coli 93.0056]
gi|427253851|gb|EKW20239.1| RNase H family protein [Escherichia coli 93.0055]
gi|427254785|gb|EKW21080.1| RNase H family protein [Escherichia coli 94.0618]
gi|427258228|gb|EKW24324.1| RNase H family protein [Escherichia coli 95.1288]
gi|427271399|gb|EKW36217.1| RNase H family protein [Escherichia coli 95.0943]
gi|427271964|gb|EKW36737.1| RNase H family protein [Escherichia coli 95.0183]
gi|427287167|gb|EKW50955.1| RNase H family protein [Escherichia coli 96.0428]
gi|427293100|gb|EKW56376.1| RNase H family protein [Escherichia coli 96.0427]
gi|427294668|gb|EKW57839.1| RNase H family protein [Escherichia coli 96.0939]
gi|427305235|gb|EKW67834.1| RNase H family protein [Escherichia coli 97.0003]
gi|427307544|gb|EKW69986.1| RNase H family protein [Escherichia coli 96.0932]
gi|427311910|gb|EKW74082.1| RNase H family protein [Escherichia coli 96.0107]
gi|427322722|gb|EKW84348.1| RNase H family protein [Escherichia coli 97.1742]
gi|427323373|gb|EKW84949.1| RNase H family protein [Escherichia coli 97.0007]
gi|427335135|gb|EKW96174.1| RNase H family protein [Escherichia coli 99.0713]
gi|427335175|gb|EKW96211.1| ribonuclease H [Escherichia coli 99.0678]
gi|427337189|gb|EKW98112.1| RNase H family protein [Escherichia coli 99.0672]
gi|429260671|gb|EKY44208.1| RNase H family protein [Escherichia coli 96.0109]
gi|429262242|gb|EKY45592.1| RNase H family protein [Escherichia coli 97.0010]
gi|430879380|gb|ELC02711.1| ribonuclease H [Escherichia coli KTE4]
gi|430881421|gb|ELC04675.1| ribonuclease H [Escherichia coli KTE2]
gi|430889375|gb|ELC12041.1| ribonuclease H [Escherichia coli KTE10]
gi|430891228|gb|ELC13764.1| ribonuclease H [Escherichia coli KTE5]
gi|430901624|gb|ELC23521.1| ribonuclease HI [Escherichia coli KTE12]
gi|430918448|gb|ELC39449.1| ribonuclease H [Escherichia coli KTE25]
gi|430922847|gb|ELC43585.1| ribonuclease H [Escherichia coli KTE21]
gi|430930404|gb|ELC50905.1| ribonuclease HI [Escherichia coli KTE26]
gi|430932594|gb|ELC53013.1| ribonuclease H [Escherichia coli KTE28]
gi|430944345|gb|ELC64442.1| ribonuclease H [Escherichia coli KTE44]
gi|430948243|gb|ELC67922.1| ribonuclease H [Escherichia coli KTE181]
gi|430993129|gb|ELD09486.1| ribonuclease H [Escherichia coli KTE204]
gi|430997760|gb|ELD14015.1| ribonuclease H [Escherichia coli KTE205]
gi|431010588|gb|ELD24932.1| ribonuclease H [Escherichia coli KTE210]
gi|431011232|gb|ELD25315.1| ribonuclease HI [Escherichia coli KTE208]
gi|431013980|gb|ELD27695.1| ribonuclease H [Escherichia coli KTE213]
gi|431019506|gb|ELD32902.1| ribonuclease HI [Escherichia coli KTE212]
gi|431045970|gb|ELD56099.1| ribonuclease H [Escherichia coli KTE228]
gi|431057848|gb|ELD67266.1| ribonuclease H [Escherichia coli KTE233]
gi|431064685|gb|ELD73547.1| ribonuclease H [Escherichia coli KTE234]
gi|431065186|gb|ELD73963.1| ribonuclease HI [Escherichia coli KTE235]
gi|431078111|gb|ELD85169.1| ribonuclease H [Escherichia coli KTE236]
gi|431086236|gb|ELD92264.1| ribonuclease H [Escherichia coli KTE237]
gi|431100296|gb|ELE05300.1| ribonuclease H [Escherichia coli KTE51]
gi|431111328|gb|ELE15232.1| ribonuclease H [Escherichia coli KTE55]
gi|431121709|gb|ELE24588.1| ribonuclease H [Escherichia coli KTE57]
gi|431123819|gb|ELE26473.1| ribonuclease H [Escherichia coli KTE58]
gi|431133776|gb|ELE35742.1| ribonuclease H [Escherichia coli KTE62]
gi|431144759|gb|ELE46453.1| ribonuclease HI [Escherichia coli KTE66]
gi|431158720|gb|ELE59318.1| ribonuclease H [Escherichia coli KTE75]
gi|431163239|gb|ELE63673.1| ribonuclease H [Escherichia coli KTE76]
gi|431165667|gb|ELE65999.1| ribonuclease H [Escherichia coli KTE77]
gi|431174794|gb|ELE74830.1| ribonuclease H [Escherichia coli KTE81]
gi|431175086|gb|ELE75107.1| ribonuclease H [Escherichia coli KTE80]
gi|431185804|gb|ELE85497.1| ribonuclease H [Escherichia coli KTE83]
gi|431204298|gb|ELF02871.1| ribonuclease HI [Escherichia coli KTE111]
gi|431205230|gb|ELF03729.1| ribonuclease H [Escherichia coli KTE116]
gi|431207988|gb|ELF06218.1| ribonuclease H [Escherichia coli KTE142]
gi|431214309|gb|ELF12133.1| ribonuclease H [Escherichia coli KTE119]
gi|431225270|gb|ELF22474.1| ribonuclease HI [Escherichia coli KTE143]
gi|431225636|gb|ELF22830.1| ribonuclease H [Escherichia coli KTE156]
gi|431231728|gb|ELF27412.1| ribonuclease H [Escherichia coli KTE161]
gi|431247737|gb|ELF41951.1| ribonuclease HI [Escherichia coli KTE171]
gi|431268557|gb|ELF60026.1| ribonuclease H [Escherichia coli KTE17]
gi|431276415|gb|ELF67435.1| ribonuclease H [Escherichia coli KTE18]
gi|431286118|gb|ELF76944.1| ribonuclease HI [Escherichia coli KTE23]
gi|431287944|gb|ELF78730.1| ribonuclease H [Escherichia coli KTE42]
gi|431301655|gb|ELF90857.1| ribonuclease H [Escherichia coli KTE29]
gi|431305818|gb|ELF94135.1| ribonuclease H [Escherichia coli KTE22]
gi|431319894|gb|ELG07547.1| ribonuclease H [Escherichia coli KTE50]
gi|431321282|gb|ELG08893.1| ribonuclease HI [Escherichia coli KTE54]
gi|431331519|gb|ELG18772.1| ribonuclease H [Escherichia coli KTE59]
gi|431341818|gb|ELG28814.1| ribonuclease HI [Escherichia coli KTE65]
gi|431342235|gb|ELG29214.1| ribonuclease HI [Escherichia coli KTE78]
gi|431345626|gb|ELG32540.1| ribonuclease HI [Escherichia coli KTE79]
gi|431357595|gb|ELG44261.1| ribonuclease HI [Escherichia coli KTE91]
gi|431368738|gb|ELG54969.1| ribonuclease H [Escherichia coli KTE115]
gi|431370562|gb|ELG56355.1| ribonuclease HI [Escherichia coli KTE118]
gi|431375072|gb|ELG60416.1| ribonuclease H [Escherichia coli KTE123]
gi|431379948|gb|ELG64848.1| ribonuclease H [Escherichia coli KTE135]
gi|431388474|gb|ELG72197.1| ribonuclease H [Escherichia coli KTE136]
gi|431392235|gb|ELG75835.1| ribonuclease H [Escherichia coli KTE140]
gi|431405473|gb|ELG88712.1| ribonuclease H [Escherichia coli KTE147]
gi|431414264|gb|ELG97007.1| ribonuclease H [Escherichia coli KTE154]
gi|431420708|gb|ELH02985.1| ribonuclease H [Escherichia coli KTE158]
gi|431425299|gb|ELH07369.1| ribonuclease H [Escherichia coli KTE165]
gi|431448816|gb|ELH29529.1| ribonuclease H [Escherichia coli KTE190]
gi|431456551|gb|ELH36894.1| ribonuclease H [Escherichia coli KTE184]
gi|431463796|gb|ELH43919.1| ribonuclease H [Escherichia coli KTE196]
gi|431472347|gb|ELH52237.1| ribonuclease H [Escherichia coli KTE197]
gi|431475711|gb|ELH55515.1| ribonuclease HI [Escherichia coli KTE203]
gi|431480893|gb|ELH60608.1| ribonuclease H [Escherichia coli KTE202]
gi|431498548|gb|ELH77733.1| ribonuclease HI [Escherichia coli KTE217]
gi|431517073|gb|ELH94595.1| ribonuclease H [Escherichia coli KTE227]
gi|431519170|gb|ELH96622.1| ribonuclease H [Escherichia coli KTE229]
gi|431537890|gb|ELI13999.1| ribonuclease H [Escherichia coli KTE105]
gi|431560861|gb|ELI34367.1| ribonuclease H [Escherichia coli KTE117]
gi|431573772|gb|ELI46567.1| ribonuclease H [Escherichia coli KTE120]
gi|431576273|gb|ELI48965.1| ribonuclease H [Escherichia coli KTE122]
gi|431589120|gb|ELI60337.1| ribonuclease H [Escherichia coli KTE125]
gi|431592895|gb|ELI63463.1| ribonuclease H [Escherichia coli KTE128]
gi|431595440|gb|ELI65438.1| ribonuclease HI [Escherichia coli KTE129]
gi|431615673|gb|ELI84796.1| ribonuclease H [Escherichia coli KTE138]
gi|431632933|gb|ELJ01218.1| ribonuclease H [Escherichia coli KTE150]
gi|431650300|gb|ELJ17635.1| ribonuclease H [Escherichia coli KTE157]
gi|431652127|gb|ELJ19287.1| ribonuclease H [Escherichia coli KTE163]
gi|431663521|gb|ELJ30281.1| ribonuclease HI [Escherichia coli KTE166]
gi|431678857|gb|ELJ44777.1| ribonuclease H [Escherichia coli KTE176]
gi|431683039|gb|ELJ48682.1| ribonuclease H [Escherichia coli KTE177]
gi|431693011|gb|ELJ58431.1| ribonuclease HI [Escherichia coli KTE179]
gi|431694937|gb|ELJ60279.1| ribonuclease H [Escherichia coli KTE180]
gi|431696902|gb|ELJ62052.1| ribonuclease H [Escherichia coli KTE232]
gi|431711488|gb|ELJ75807.1| ribonuclease H [Escherichia coli KTE82]
gi|431712585|gb|ELJ76874.1| ribonuclease H [Escherichia coli KTE85]
gi|431722751|gb|ELJ86714.1| ribonuclease H [Escherichia coli KTE90]
gi|431726889|gb|ELJ90654.1| ribonuclease H [Escherichia coli KTE95]
gi|441609940|emb|CCP94604.1| Ribonuclease HI [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441655576|emb|CCP99812.1| Ribonuclease HI [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|443420730|gb|AGC85634.1| RNase HI [Escherichia coli APEC O78]
gi|444543302|gb|ELV22577.1| RNase H family protein [Escherichia coli 99.0814]
gi|444551881|gb|ELV29755.1| RNase H family protein [Escherichia coli 09BKT078844]
gi|444552540|gb|ELV30337.1| RNase H family protein [Escherichia coli 99.0815]
gi|444565952|gb|ELV42793.1| RNase H family protein [Escherichia coli 99.0839]
gi|444568227|gb|ELV44915.1| RNase H family protein [Escherichia coli 99.0816]
gi|444572798|gb|ELV49209.1| RNase H family protein [Escherichia coli 99.0848]
gi|444583536|gb|ELV59247.1| RNase H family protein [Escherichia coli 99.1753]
gi|444586400|gb|ELV61908.1| RNase H family protein [Escherichia coli 99.1775]
gi|444586765|gb|ELV62250.1| RNase H family protein [Escherichia coli 99.1793]
gi|444600795|gb|ELV75615.1| RNase H family protein [Escherichia coli ATCC 700728]
gi|444600869|gb|ELV75683.1| RNase H family protein [Escherichia coli PA11]
gi|444609908|gb|ELV84350.1| RNase H family protein [Escherichia coli 99.1805]
gi|444616078|gb|ELV90251.1| RNase H family protein [Escherichia coli PA13]
gi|444616738|gb|ELV90891.1| RNase H family protein [Escherichia coli PA19]
gi|444624402|gb|ELV98287.1| RNase H family protein [Escherichia coli PA2]
gi|444633571|gb|ELW07084.1| RNase H family protein [Escherichia coli PA48]
gi|444633837|gb|ELW07335.1| RNase H family protein [Escherichia coli PA47]
gi|444638709|gb|ELW12037.1| RNase H family protein [Escherichia coli PA8]
gi|444648758|gb|ELW21674.1| RNase H family protein [Escherichia coli 7.1982]
gi|444650905|gb|ELW23719.1| RNase H family protein [Escherichia coli 99.1781]
gi|444654913|gb|ELW27543.1| RNase H family protein [Escherichia coli 99.1762]
gi|444664002|gb|ELW36205.1| RNase H family protein [Escherichia coli PA35]
gi|444668618|gb|ELW40628.1| RNase H family protein [Escherichia coli 3.4880]
gi|444673402|gb|ELW45040.1| RNase H family protein [Escherichia coli 95.0083]
gi|444674833|gb|ELW46330.1| RNase H family protein [Escherichia coli 99.0670]
gi|449323381|gb|EMD13341.1| RNase HI [Escherichia coli O08]
gi|449325248|gb|EMD15160.1| RNase HI [Escherichia coli SEPT362]
gi|449325449|gb|EMD15353.1| RNase HI [Escherichia coli S17]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|169625445|ref|XP_001806126.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
gi|111055454|gb|EAT76574.1| hypothetical protein SNOG_15995 [Phaeosphaeria nodorum SN15]
Length = 319
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAK 65
+V+ TDG+ RNGK A AG GVYFG N+ N + G+ TN AE+ AL++A
Sbjct: 20 LVINTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALEKAP 79
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
+ V I SDS++ I C+ +W+P W+ W+K +G +N E +Q ++ ++ +
Sbjct: 80 IDQV--VLISSDSRYAINCLTDWLPLWKQRSWKKVEGIFKENTELIQSIVKRMETRQKFN 137
Query: 124 --VKWEFVPGHGNSHGNMKADEMA 145
+ +V GH GN AD++A
Sbjct: 138 ALTYFWWVKGHSGDPGNEFADKLA 161
>gi|33594118|ref|NP_881762.1| ribonuclease H [Bordetella pertussis Tohama I]
gi|384205420|ref|YP_005591159.1| ribonuclease H [Bordetella pertussis CS]
gi|408414276|ref|YP_006624983.1| ribonuclease HI [Bordetella pertussis 18323]
gi|81836121|sp|Q7VRX8.1|RNH_BORPE RecName: Full=Ribonuclease H; Short=RNase H
gi|33564192|emb|CAE43477.1| ribonuclease HI [Bordetella pertussis Tohama I]
gi|332383534|gb|AEE68381.1| ribonuclease H [Bordetella pertussis CS]
gi|401776446|emb|CCJ61638.1| ribonuclease HI [Bordetella pertussis 18323]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV + TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DSQ+++K + EW+ W+ GWR AD KPV+N E Q L Q+G+ + V+
Sbjct: 69 RPC--RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQ-VQ 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>gi|33598343|ref|NP_885986.1| ribonuclease H [Bordetella parapertussis 12822]
gi|33603253|ref|NP_890813.1| ribonuclease H [Bordetella bronchiseptica RB50]
gi|410474361|ref|YP_006897642.1| ribonuclease HI [Bordetella parapertussis Bpp5]
gi|412341418|ref|YP_006970173.1| ribonuclease HI [Bordetella bronchiseptica 253]
gi|427816263|ref|ZP_18983327.1| ribonuclease HI [Bordetella bronchiseptica 1289]
gi|81836755|sp|Q7WCJ8.1|RNH_BORBR RecName: Full=Ribonuclease H; Short=RNase H
gi|33566901|emb|CAE39117.1| ribonuclease HI [Bordetella parapertussis]
gi|33577377|emb|CAE34642.1| ribonuclease HI [Bordetella bronchiseptica RB50]
gi|408444471|emb|CCJ51219.1| ribonuclease HI [Bordetella parapertussis Bpp5]
gi|408771252|emb|CCJ56052.1| ribonuclease HI [Bordetella bronchiseptica 253]
gi|410567263|emb|CCN24834.1| ribonuclease HI [Bordetella bronchiseptica 1289]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV + TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DSQ+++K + EW+ W+ GWR AD KPV+N E Q L Q+G+ + V+
Sbjct: 69 RPC--RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQ-VQ 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>gi|110640429|ref|YP_668157.1| ribonuclease H [Escherichia coli 536]
gi|191171436|ref|ZP_03032985.1| ribonuclease H [Escherichia coli F11]
gi|215485370|ref|YP_002327801.1| ribonuclease H [Escherichia coli O127:H6 str. E2348/69]
gi|222155034|ref|YP_002555173.1| ribonuclease HI [Escherichia coli LF82]
gi|306813366|ref|ZP_07447559.1| ribonuclease H [Escherichia coli NC101]
gi|312964724|ref|ZP_07778975.1| ribonuclease H [Escherichia coli 2362-75]
gi|387615556|ref|YP_006118578.1| ribonuclease H [Escherichia coli O83:H1 str. NRG 857C]
gi|415836002|ref|ZP_11518478.1| ribonuclease H [Escherichia coli RN587/1]
gi|416334130|ref|ZP_11671149.1| Ribonuclease HI [Escherichia coli WV_060327]
gi|417284526|ref|ZP_12071821.1| ribonuclease HI [Escherichia coli 3003]
gi|417287939|ref|ZP_12075225.1| ribonuclease HI [Escherichia coli TW07793]
gi|417754057|ref|ZP_12402152.1| ribonuclease HI [Escherichia coli DEC2B]
gi|418995299|ref|ZP_13542918.1| ribonuclease HI [Escherichia coli DEC1A]
gi|419000412|ref|ZP_13547974.1| ribonuclease HI [Escherichia coli DEC1B]
gi|419005949|ref|ZP_13553405.1| ribonuclease HI [Escherichia coli DEC1C]
gi|419011772|ref|ZP_13559141.1| ribonuclease HI [Escherichia coli DEC1D]
gi|419016716|ref|ZP_13564042.1| ribonuclease HI [Escherichia coli DEC1E]
gi|419022297|ref|ZP_13569545.1| ribonuclease HI [Escherichia coli DEC2A]
gi|419027223|ref|ZP_13574423.1| ribonuclease HI [Escherichia coli DEC2C]
gi|419033544|ref|ZP_13580642.1| ribonuclease HI [Escherichia coli DEC2D]
gi|419038005|ref|ZP_13585065.1| ribonuclease HI [Escherichia coli DEC2E]
gi|419699138|ref|ZP_14226760.1| ribonuclease H [Escherichia coli SCI-07]
gi|425276089|ref|ZP_18667438.1| ribonuclease H [Escherichia coli ARS4.2123]
gi|425298387|ref|ZP_18688441.1| ribonuclease H [Escherichia coli 07798]
gi|432379870|ref|ZP_19622835.1| ribonuclease H [Escherichia coli KTE15]
gi|432385596|ref|ZP_19628497.1| ribonuclease H [Escherichia coli KTE16]
gi|432432281|ref|ZP_19674712.1| ribonuclease H [Escherichia coli KTE187]
gi|432439546|ref|ZP_19681910.1| ribonuclease H [Escherichia coli KTE189]
gi|432444669|ref|ZP_19686979.1| ribonuclease H [Escherichia coli KTE191]
gi|432469543|ref|ZP_19711598.1| ribonuclease H [Escherichia coli KTE206]
gi|432512408|ref|ZP_19749654.1| ribonuclease H [Escherichia coli KTE224]
gi|432552248|ref|ZP_19788981.1| ribonuclease H [Escherichia coli KTE47]
gi|432609916|ref|ZP_19846091.1| ribonuclease H [Escherichia coli KTE72]
gi|432644619|ref|ZP_19880425.1| ribonuclease H [Escherichia coli KTE86]
gi|432654253|ref|ZP_19889974.1| ribonuclease H [Escherichia coli KTE93]
gi|432697517|ref|ZP_19932692.1| ribonuclease H [Escherichia coli KTE169]
gi|432711898|ref|ZP_19946951.1| ribonuclease H [Escherichia coli KTE8]
gi|432730941|ref|ZP_19965792.1| ribonuclease H [Escherichia coli KTE45]
gi|432744136|ref|ZP_19978844.1| ribonuclease H [Escherichia coli KTE43]
gi|432758009|ref|ZP_19992534.1| ribonuclease H [Escherichia coli KTE46]
gi|432800537|ref|ZP_20034528.1| ribonuclease H [Escherichia coli KTE84]
gi|432842472|ref|ZP_20075899.1| ribonuclease H [Escherichia coli KTE141]
gi|432902510|ref|ZP_20112258.1| ribonuclease H [Escherichia coli KTE194]
gi|432941904|ref|ZP_20139402.1| ribonuclease H [Escherichia coli KTE183]
gi|432970347|ref|ZP_20159228.1| ribonuclease H [Escherichia coli KTE207]
gi|432983934|ref|ZP_20172675.1| ribonuclease H [Escherichia coli KTE215]
gi|433012385|ref|ZP_20200772.1| ribonuclease H [Escherichia coli KTE104]
gi|433021877|ref|ZP_20209913.1| ribonuclease H [Escherichia coli KTE106]
gi|433037136|ref|ZP_20224763.1| ribonuclease H [Escherichia coli KTE113]
gi|433076370|ref|ZP_20262948.1| ribonuclease H [Escherichia coli KTE131]
gi|433081116|ref|ZP_20267594.1| ribonuclease H [Escherichia coli KTE133]
gi|433099749|ref|ZP_20285869.1| ribonuclease H [Escherichia coli KTE145]
gi|433142709|ref|ZP_20327894.1| ribonuclease H [Escherichia coli KTE168]
gi|433186927|ref|ZP_20371066.1| ribonuclease H [Escherichia coli KTE88]
gi|433196781|ref|ZP_20380718.1| ribonuclease H [Escherichia coli KTE94]
gi|433206382|ref|ZP_20390089.1| ribonuclease H [Escherichia coli KTE97]
gi|433327039|ref|ZP_20403646.1| ribonuclease H [Escherichia coli J96]
gi|123049482|sp|Q0TLC3.1|RNH_ECOL5 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808024|sp|B7UJB0.1|RNH_ECO27 RecName: Full=Ribonuclease H; Short=RNase H
gi|110342021|gb|ABG68258.1| ribonuclease HI [Escherichia coli 536]
gi|190908370|gb|EDV67960.1| ribonuclease H [Escherichia coli F11]
gi|215263442|emb|CAS07762.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Escherichia coli
O127:H6 str. E2348/69]
gi|222032039|emb|CAP74778.1| ribonuclease HI [Escherichia coli LF82]
gi|305854129|gb|EFM54568.1| ribonuclease H [Escherichia coli NC101]
gi|312290745|gb|EFR18623.1| ribonuclease H [Escherichia coli 2362-75]
gi|312944817|gb|ADR25644.1| ribonuclease H [Escherichia coli O83:H1 str. NRG 857C]
gi|320197299|gb|EFW71915.1| Ribonuclease HI [Escherichia coli WV_060327]
gi|323191553|gb|EFZ76813.1| ribonuclease H [Escherichia coli RN587/1]
gi|377850241|gb|EHU15208.1| ribonuclease HI [Escherichia coli DEC1A]
gi|377850750|gb|EHU15705.1| ribonuclease HI [Escherichia coli DEC1C]
gi|377853902|gb|EHU18792.1| ribonuclease HI [Escherichia coli DEC1B]
gi|377864495|gb|EHU29291.1| ribonuclease HI [Escherichia coli DEC1D]
gi|377866690|gb|EHU31454.1| ribonuclease HI [Escherichia coli DEC1E]
gi|377868779|gb|EHU33506.1| ribonuclease HI [Escherichia coli DEC2A]
gi|377879003|gb|EHU43576.1| ribonuclease HI [Escherichia coli DEC2B]
gi|377883963|gb|EHU48481.1| ribonuclease HI [Escherichia coli DEC2D]
gi|377885725|gb|EHU50216.1| ribonuclease HI [Escherichia coli DEC2C]
gi|377898249|gb|EHU62609.1| ribonuclease HI [Escherichia coli DEC2E]
gi|380349660|gb|EIA37926.1| ribonuclease H [Escherichia coli SCI-07]
gi|386242735|gb|EII84470.1| ribonuclease HI [Escherichia coli 3003]
gi|386248724|gb|EII94896.1| ribonuclease HI [Escherichia coli TW07793]
gi|408207528|gb|EKI32266.1| ribonuclease H [Escherichia coli ARS4.2123]
gi|408221905|gb|EKI45828.1| ribonuclease H [Escherichia coli 07798]
gi|430910429|gb|ELC31739.1| ribonuclease H [Escherichia coli KTE16]
gi|430912135|gb|ELC33383.1| ribonuclease H [Escherichia coli KTE15]
gi|430953193|gb|ELC72101.1| ribonuclease H [Escherichia coli KTE187]
gi|430969752|gb|ELC86850.1| ribonuclease H [Escherichia coli KTE189]
gi|430976553|gb|ELC93417.1| ribonuclease H [Escherichia coli KTE191]
gi|431000257|gb|ELD16319.1| ribonuclease H [Escherichia coli KTE206]
gi|431045199|gb|ELD55437.1| ribonuclease H [Escherichia coli KTE224]
gi|431087175|gb|ELD93174.1| ribonuclease H [Escherichia coli KTE47]
gi|431151892|gb|ELE52852.1| ribonuclease H [Escherichia coli KTE72]
gi|431184951|gb|ELE84690.1| ribonuclease H [Escherichia coli KTE86]
gi|431195855|gb|ELE94815.1| ribonuclease H [Escherichia coli KTE93]
gi|431247408|gb|ELF41638.1| ribonuclease H [Escherichia coli KTE169]
gi|431259923|gb|ELF52282.1| ribonuclease H [Escherichia coli KTE8]
gi|431278672|gb|ELF69649.1| ribonuclease H [Escherichia coli KTE45]
gi|431296213|gb|ELF85934.1| ribonuclease H [Escherichia coli KTE43]
gi|431312412|gb|ELG00414.1| ribonuclease H [Escherichia coli KTE46]
gi|431351433|gb|ELG38220.1| ribonuclease H [Escherichia coli KTE84]
gi|431397751|gb|ELG81185.1| ribonuclease H [Escherichia coli KTE141]
gi|431438639|gb|ELH20013.1| ribonuclease H [Escherichia coli KTE194]
gi|431456505|gb|ELH36849.1| ribonuclease H [Escherichia coli KTE183]
gi|431486707|gb|ELH66354.1| ribonuclease H [Escherichia coli KTE207]
gi|431506968|gb|ELH85255.1| ribonuclease H [Escherichia coli KTE215]
gi|431536619|gb|ELI12782.1| ribonuclease H [Escherichia coli KTE104]
gi|431542427|gb|ELI17595.1| ribonuclease H [Escherichia coli KTE106]
gi|431556478|gb|ELI30256.1| ribonuclease H [Escherichia coli KTE113]
gi|431602843|gb|ELI72272.1| ribonuclease H [Escherichia coli KTE131]
gi|431606614|gb|ELI75989.1| ribonuclease H [Escherichia coli KTE133]
gi|431623678|gb|ELI92305.1| ribonuclease H [Escherichia coli KTE145]
gi|431667532|gb|ELJ34114.1| ribonuclease H [Escherichia coli KTE168]
gi|431710732|gb|ELJ75103.1| ribonuclease H [Escherichia coli KTE88]
gi|431726256|gb|ELJ90067.1| ribonuclease H [Escherichia coli KTE94]
gi|431733795|gb|ELJ97201.1| ribonuclease H [Escherichia coli KTE97]
gi|432345110|gb|ELL39632.1| ribonuclease H [Escherichia coli J96]
Length = 155
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|187479404|ref|YP_787429.1| ribonuclease H [Bordetella avium 197N]
gi|123724928|sp|Q2KV56.1|RNH_BORA1 RecName: Full=Ribonuclease H; Short=RNase H
gi|115423991|emb|CAJ50544.1| ribonuclease HI [Bordetella avium 197N]
Length = 153
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P + V ++TDGAC N G G+GV +G + G + TNN EI +
Sbjct: 7 PADLVEMWTDGACKGNPGPG---GWGVLMRYGSHEKTFFGGDP--QTTNNRMEILAVVEG 61
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K A V I +DSQ+++K + EW+P W+ GW AD KPV+N E Q L Q+ +
Sbjct: 62 LRALKRACT--VVIHTDSQYVMKGMTEWLPNWKRRGWLTADKKPVKNAELWQLLDAQVAR 119
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
E V+W++V GH GN AD +A
Sbjct: 120 HE-VRWQWVRGHNGDPGNEMADMLA 143
>gi|421501801|ref|ZP_15948758.1| ribonuclease H [Pseudomonas mendocina DLHK]
gi|400347544|gb|EJO95897.1| ribonuclease H [Pseudomonas mendocina DLHK]
Length = 150
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G VY G L T TNN E+ AI
Sbjct: 1 MSETDEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPST---TNNRMELMAAIAG 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L + R C + +DSQ+++K +QEW+P W+ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----IALTRPCSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + + V W++V GH GN +AD++A
Sbjct: 113 VNRHQ-VSWQWVRGHAGHPGNERADQLA 139
>gi|160286377|pdb|2Z1I|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
gi|160286378|pdb|2Z1I|B Chain B, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
Length = 155
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + + R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYE---RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS ++ K + EW+ W+ GW+KAD KPV+N + + L +G+ +KW
Sbjct: 62 HC--EVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGR-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|300990976|ref|ZP_07179426.1| ribonuclease HI [Escherichia coli MS 200-1]
gi|422376868|ref|ZP_16457115.1| ribonuclease HI [Escherichia coli MS 60-1]
gi|422379635|ref|ZP_16459824.1| ribonuclease HI [Escherichia coli MS 57-2]
gi|300305642|gb|EFJ60162.1| ribonuclease HI [Escherichia coli MS 200-1]
gi|324009121|gb|EGB78340.1| ribonuclease HI [Escherichia coli MS 57-2]
gi|324011830|gb|EGB81049.1| ribonuclease HI [Escherichia coli MS 60-1]
Length = 179
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 29 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFS-AGYT--RTTNNRMELMAAIVALEALKE 85
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 86 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 142
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 143 EWVKGHAGHPENERCDELARAAA 165
>gi|160286380|pdb|2Z1J|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115KN143K
T145K)
Length = 155
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + + R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYE---RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS ++ K + EW+ W+ GW+KAD KPV+N + + L +G+ +KW
Sbjct: 62 HC--EVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGR-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|337755606|ref|YP_004648117.1| ribonuclease HI [Francisella sp. TX077308]
gi|336447211|gb|AEI36517.1| Ribonuclease HI [Francisella sp. TX077308]
Length = 152
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G G+G N+ TNN E+ AI L QA
Sbjct: 8 NNVIAYTDGACKGNPGIG---GWGAILSYNSVDKEIYGAEKDTTNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + +W+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTTKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWSWVKGHSGNQGNEKADELANKA 145
>gi|258450513|gb|ACV72186.1| ribonuclease H [uncultured organism]
Length = 161
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ VV++TDGAC N G GYG + FG++ ++G TNN E+ AI AL
Sbjct: 3 ERRVVIYTDGACSGNPGPG---GYGAILTFGDHE-REISGS-DPHTTNNRMELMAAIAAL 57
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K +V + +DS+++ K + W+ +W+ NGWR AD KPV+N + Q L + +
Sbjct: 58 EALKKPC--KVELHTDSEYLQKGISTWIKQWKRNGWRTADRKPVKNADLWQRLDAALARH 115
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAAG 150
E V W +V GH N +AD++AR A G
Sbjct: 116 E-VDWRWVRGHVGHAMNERADQLARAAIG 143
>gi|227884793|ref|ZP_04002598.1| ribonuclease H [Escherichia coli 83972]
gi|300988193|ref|ZP_07178594.1| ribonuclease HI [Escherichia coli MS 45-1]
gi|301050550|ref|ZP_07197423.1| ribonuclease HI [Escherichia coli MS 185-1]
gi|422365161|ref|ZP_16445664.1| ribonuclease HI [Escherichia coli MS 153-1]
gi|227838234|gb|EEJ48700.1| ribonuclease H [Escherichia coli 83972]
gi|300297758|gb|EFJ54143.1| ribonuclease HI [Escherichia coli MS 185-1]
gi|300407507|gb|EFJ91045.1| ribonuclease HI [Escherichia coli MS 45-1]
gi|315292141|gb|EFU51493.1| ribonuclease HI [Escherichia coli MS 153-1]
Length = 179
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 28 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 84
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 85 EHC--EVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 141
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 142 WEWVKGHAGHPENERCDELARAAA 165
>gi|161486315|ref|NP_752197.2| ribonuclease H [Escherichia coli CFT073]
gi|331656204|ref|ZP_08357166.1| ribonuclease HI [Escherichia coli TA206]
gi|331681595|ref|ZP_08382231.1| ribonuclease HI [Escherichia coli H299]
gi|386637569|ref|YP_006104367.1| RNase HI [Escherichia coli ABU 83972]
gi|417151580|ref|ZP_11991107.1| ribonuclease HI [Escherichia coli 1.2264]
gi|419913238|ref|ZP_14431679.1| ribonuclease H [Escherichia coli KD1]
gi|422368071|ref|ZP_16448490.1| ribonuclease HI [Escherichia coli MS 16-3]
gi|432410214|ref|ZP_19652900.1| ribonuclease H [Escherichia coli KTE39]
gi|432434761|ref|ZP_19677171.1| ribonuclease H [Escherichia coli KTE188]
gi|432454990|ref|ZP_19697201.1| ribonuclease H [Escherichia coli KTE201]
gi|432494039|ref|ZP_19735861.1| ribonuclease H [Escherichia coli KTE214]
gi|432510444|ref|ZP_19749304.1| ribonuclease H [Escherichia coli KTE220]
gi|432522355|ref|ZP_19759499.1| ribonuclease HI [Escherichia coli KTE230]
gi|432567086|ref|ZP_19803615.1| ribonuclease H [Escherichia coli KTE53]
gi|432591215|ref|ZP_19827547.1| ribonuclease H [Escherichia coli KTE60]
gi|432606077|ref|ZP_19842277.1| ribonuclease H [Escherichia coli KTE67]
gi|432649581|ref|ZP_19885351.1| ribonuclease H [Escherichia coli KTE87]
gi|432782100|ref|ZP_20016286.1| ribonuclease H [Escherichia coli KTE63]
gi|432896932|ref|ZP_20107975.1| ribonuclease HI [Escherichia coli KTE192]
gi|432976916|ref|ZP_20165743.1| ribonuclease HI [Escherichia coli KTE209]
gi|432993969|ref|ZP_20182589.1| ribonuclease H [Escherichia coli KTE218]
gi|432998388|ref|ZP_20186937.1| ribonuclease H [Escherichia coli KTE223]
gi|433027230|ref|ZP_20215108.1| ribonuclease H [Escherichia coli KTE109]
gi|433056540|ref|ZP_20243638.1| ribonuclease HI [Escherichia coli KTE124]
gi|433085864|ref|ZP_20272272.1| ribonuclease H [Escherichia coli KTE137]
gi|433114149|ref|ZP_20299972.1| ribonuclease H [Escherichia coli KTE153]
gi|433123811|ref|ZP_20309408.1| ribonuclease H [Escherichia coli KTE160]
gi|433137881|ref|ZP_20323172.1| ribonuclease H [Escherichia coli KTE167]
gi|433147631|ref|ZP_20332715.1| ribonuclease H [Escherichia coli KTE174]
gi|433211131|ref|ZP_20394753.1| ribonuclease H [Escherichia coli KTE99]
gi|442606048|ref|ZP_21020852.1| Ribonuclease HI [Escherichia coli Nissle 1917]
gi|307552061|gb|ADN44836.1| RNase HI [Escherichia coli ABU 83972]
gi|315300179|gb|EFU59416.1| ribonuclease HI [Escherichia coli MS 16-3]
gi|331054452|gb|EGI26461.1| ribonuclease HI [Escherichia coli TA206]
gi|331081169|gb|EGI52331.1| ribonuclease HI [Escherichia coli H299]
gi|386159771|gb|EIH21585.1| ribonuclease HI [Escherichia coli 1.2264]
gi|388389942|gb|EIL51450.1| ribonuclease H [Escherichia coli KD1]
gi|430938795|gb|ELC59025.1| ribonuclease H [Escherichia coli KTE39]
gi|430967988|gb|ELC85228.1| ribonuclease H [Escherichia coli KTE188]
gi|430986271|gb|ELD02843.1| ribonuclease H [Escherichia coli KTE201]
gi|431029813|gb|ELD42844.1| ribonuclease H [Escherichia coli KTE214]
gi|431032587|gb|ELD45297.1| ribonuclease H [Escherichia coli KTE220]
gi|431055518|gb|ELD65063.1| ribonuclease HI [Escherichia coli KTE230]
gi|431103380|gb|ELE08032.1| ribonuclease H [Escherichia coli KTE53]
gi|431133574|gb|ELE35554.1| ribonuclease H [Escherichia coli KTE60]
gi|431142345|gb|ELE44095.1| ribonuclease H [Escherichia coli KTE67]
gi|431194867|gb|ELE94082.1| ribonuclease H [Escherichia coli KTE87]
gi|431331812|gb|ELG19055.1| ribonuclease H [Escherichia coli KTE63]
gi|431430124|gb|ELH11957.1| ribonuclease HI [Escherichia coli KTE192]
gi|431483874|gb|ELH63563.1| ribonuclease HI [Escherichia coli KTE209]
gi|431510752|gb|ELH88994.1| ribonuclease H [Escherichia coli KTE218]
gi|431515656|gb|ELH93473.1| ribonuclease H [Escherichia coli KTE223]
gi|431546652|gb|ELI21044.1| ribonuclease H [Escherichia coli KTE109]
gi|431575094|gb|ELI47842.1| ribonuclease HI [Escherichia coli KTE124]
gi|431610548|gb|ELI79837.1| ribonuclease H [Escherichia coli KTE137]
gi|431637462|gb|ELJ05524.1| ribonuclease H [Escherichia coli KTE153]
gi|431650747|gb|ELJ18060.1| ribonuclease H [Escherichia coli KTE160]
gi|431665648|gb|ELJ32364.1| ribonuclease H [Escherichia coli KTE167]
gi|431678887|gb|ELJ44806.1| ribonuclease H [Escherichia coli KTE174]
gi|431736425|gb|ELJ99752.1| ribonuclease H [Escherichia coli KTE99]
gi|441712899|emb|CCQ06829.1| Ribonuclease HI [Escherichia coli Nissle 1917]
Length = 155
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|393760787|ref|ZP_10349592.1| ribonuclease H [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393161015|gb|EJC61084.1| ribonuclease H [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 147
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N +G G+G TNN E+ I ALK K
Sbjct: 5 VEIWTDGACKGNPGLG---GWGALLRHGGREKAICGGEANTTNNRMELMAVIEALKALKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DSQ++ K + EW+P W++ GWR AD KPV+N + QEL Q + E + W
Sbjct: 62 PC--QVRVHTDSQYVQKGMNEWLPGWKARGWRTADKKPVKNADLWQELEQQAAKHE-LTW 118
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH GN +AD++A +
Sbjct: 119 LWVRGHAGDPGNERADQLANE 139
>gi|388545100|ref|ZP_10148384.1| ribonuclease H [Pseudomonas sp. M47T1]
gi|388276740|gb|EIK96318.1| ribonuclease H [Pseudomonas sp. M47T1]
Length = 149
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N VG V G L T TNN E+ AI L++
Sbjct: 3 DSVEIFTDGACKGNPGVGGWGALLVCKGVEKELWGGEAAT---TNNRMELMAAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DS++++K + EWM W+ GW+ A +PV+N + Q L Q+G+ +V
Sbjct: 60 KRPC--DVLLVTDSEYVMKGINEWMVNWKKRGWKTAAKQPVKNADLWQMLDEQVGR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHTGHHGNERADQLA 137
>gi|152987448|ref|YP_001348840.1| ribonuclease H [Pseudomonas aeruginosa PA7]
gi|452878533|ref|ZP_21955732.1| ribonuclease H [Pseudomonas aeruginosa VRFPA01]
gi|189043702|sp|A6V705.1|RNH_PSEA7 RecName: Full=Ribonuclease H; Short=RNase H
gi|150962606|gb|ABR84631.1| ribonuclease H [Pseudomonas aeruginosa PA7]
gi|452184799|gb|EME11817.1| ribonuclease H [Pseudomonas aeruginosa VRFPA01]
Length = 148
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLV--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>gi|432857039|ref|ZP_20084269.1| ribonuclease HI [Escherichia coli KTE144]
gi|432858606|ref|ZP_20085009.1| ribonuclease H [Escherichia coli KTE146]
gi|431394739|gb|ELG78262.1| ribonuclease HI [Escherichia coli KTE144]
gi|431408362|gb|ELG91548.1| ribonuclease H [Escherichia coli KTE146]
Length = 155
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HHIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|15597012|ref|NP_250506.1| ribonuclease H [Pseudomonas aeruginosa PAO1]
gi|116049765|ref|YP_791428.1| ribonuclease H [Pseudomonas aeruginosa UCBPP-PA14]
gi|218892231|ref|YP_002441098.1| ribonuclease H [Pseudomonas aeruginosa LESB58]
gi|254234909|ref|ZP_04928232.1| ribonuclease H [Pseudomonas aeruginosa C3719]
gi|254240208|ref|ZP_04933530.1| ribonuclease H [Pseudomonas aeruginosa 2192]
gi|296389794|ref|ZP_06879269.1| ribonuclease H [Pseudomonas aeruginosa PAb1]
gi|313110513|ref|ZP_07796398.1| ribonuclease H [Pseudomonas aeruginosa 39016]
gi|355644065|ref|ZP_09053605.1| ribonuclease HI [Pseudomonas sp. 2_1_26]
gi|386065660|ref|YP_005980964.1| ribonuclease H [Pseudomonas aeruginosa NCGM2.S1]
gi|392984712|ref|YP_006483299.1| ribonuclease H [Pseudomonas aeruginosa DK2]
gi|416854329|ref|ZP_11910807.1| ribonuclease H [Pseudomonas aeruginosa 138244]
gi|416872403|ref|ZP_11916641.1| ribonuclease H [Pseudomonas aeruginosa 152504]
gi|418585596|ref|ZP_13149644.1| ribonuclease H [Pseudomonas aeruginosa MPAO1/P1]
gi|418591350|ref|ZP_13155249.1| ribonuclease H [Pseudomonas aeruginosa MPAO1/P2]
gi|419755319|ref|ZP_14281674.1| ribonuclease H [Pseudomonas aeruginosa PADK2_CF510]
gi|420140129|ref|ZP_14647905.1| ribonuclease H [Pseudomonas aeruginosa CIG1]
gi|421154495|ref|ZP_15614000.1| ribonuclease H [Pseudomonas aeruginosa ATCC 14886]
gi|421161172|ref|ZP_15620138.1| ribonuclease H [Pseudomonas aeruginosa ATCC 25324]
gi|421168544|ref|ZP_15626620.1| ribonuclease H [Pseudomonas aeruginosa ATCC 700888]
gi|421175058|ref|ZP_15632755.1| ribonuclease H [Pseudomonas aeruginosa CI27]
gi|421181088|ref|ZP_15638606.1| ribonuclease H [Pseudomonas aeruginosa E2]
gi|421516456|ref|ZP_15963142.1| ribonuclease H [Pseudomonas aeruginosa PAO579]
gi|21362890|sp|Q9I2S9.1|RNH_PSEAE RecName: Full=Ribonuclease HI; Short=RNase HI
gi|122258876|sp|Q02KV8.1|RNH_PSEAB RecName: Full=Ribonuclease H; Short=RNase H
gi|226736836|sp|B7VB62.1|RNH_PSEA8 RecName: Full=Ribonuclease H; Short=RNase H
gi|9947800|gb|AAG05204.1|AE004608_3 ribonuclease H [Pseudomonas aeruginosa PAO1]
gi|115584986|gb|ABJ11001.1| ribonuclease H [Pseudomonas aeruginosa UCBPP-PA14]
gi|126166840|gb|EAZ52351.1| ribonuclease H [Pseudomonas aeruginosa C3719]
gi|126193586|gb|EAZ57649.1| ribonuclease H [Pseudomonas aeruginosa 2192]
gi|218772457|emb|CAW28239.1| ribonuclease H [Pseudomonas aeruginosa LESB58]
gi|310882900|gb|EFQ41494.1| ribonuclease H [Pseudomonas aeruginosa 39016]
gi|334844164|gb|EGM22742.1| ribonuclease H [Pseudomonas aeruginosa 138244]
gi|334845932|gb|EGM24490.1| ribonuclease H [Pseudomonas aeruginosa 152504]
gi|348034219|dbj|BAK89579.1| ribonuclease H [Pseudomonas aeruginosa NCGM2.S1]
gi|354829393|gb|EHF13468.1| ribonuclease HI [Pseudomonas sp. 2_1_26]
gi|375044285|gb|EHS36894.1| ribonuclease H [Pseudomonas aeruginosa MPAO1/P1]
gi|375049890|gb|EHS42378.1| ribonuclease H [Pseudomonas aeruginosa MPAO1/P2]
gi|384398016|gb|EIE44424.1| ribonuclease H [Pseudomonas aeruginosa PADK2_CF510]
gi|392320217|gb|AFM65597.1| ribonuclease H [Pseudomonas aeruginosa DK2]
gi|403247139|gb|EJY60819.1| ribonuclease H [Pseudomonas aeruginosa CIG1]
gi|404350184|gb|EJZ76521.1| ribonuclease H [Pseudomonas aeruginosa PAO579]
gi|404521896|gb|EKA32450.1| ribonuclease H [Pseudomonas aeruginosa ATCC 14886]
gi|404529353|gb|EKA39399.1| ribonuclease H [Pseudomonas aeruginosa ATCC 700888]
gi|404533011|gb|EKA42864.1| ribonuclease H [Pseudomonas aeruginosa CI27]
gi|404540634|gb|EKA50031.1| ribonuclease H [Pseudomonas aeruginosa ATCC 25324]
gi|404544316|gb|EKA53505.1| ribonuclease H [Pseudomonas aeruginosa E2]
gi|453047178|gb|EME94893.1| ribonuclease H [Pseudomonas aeruginosa PA21_ST175]
Length = 148
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLI--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>gi|386627734|ref|YP_006147454.1| ribonuclease H [Escherichia coli str. 'clone D i2']
gi|386632654|ref|YP_006152373.1| ribonuclease H [Escherichia coli str. 'clone D i14']
gi|26106555|gb|AAN78741.1|AE016755_241 Ribonuclease HI [Escherichia coli CFT073]
gi|355418633|gb|AER82830.1| ribonuclease H [Escherichia coli str. 'clone D i2']
gi|355423553|gb|AER87749.1| ribonuclease H [Escherichia coli str. 'clone D i14']
Length = 192
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 41 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 97
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 98 EHC--EVILSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 154
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 155 WEWVKGHAGHPENERCDELARAAA 178
>gi|89256214|ref|YP_513576.1| ribonuclease H [Francisella tularensis subsp. holarctica LVS]
gi|115314681|ref|YP_763404.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
gi|118497679|ref|YP_898729.1| ribonuclease H [Francisella novicida U112]
gi|134302099|ref|YP_001122068.1| RNase H [Francisella tularensis subsp. tularensis WY96-3418]
gi|156502273|ref|YP_001428338.1| RNase H [Francisella tularensis subsp. holarctica FTNF002-00]
gi|187931442|ref|YP_001891426.1| Ribonuclease H [Francisella tularensis subsp. mediasiatica FSC147]
gi|194323651|ref|ZP_03057427.1| RNase H [Francisella novicida FTE]
gi|208779743|ref|ZP_03247087.1| RNase H [Francisella novicida FTG]
gi|254367540|ref|ZP_04983566.1| hypothetical protein FTHG_00794 [Francisella tularensis subsp.
holarctica 257]
gi|290952959|ref|ZP_06557580.1| ribonuclease H [Francisella tularensis subsp. holarctica URFT1]
gi|385793067|ref|YP_005826043.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385794350|ref|YP_005830756.1| Ribonuclease H [Francisella tularensis subsp. tularensis NE061598]
gi|421751917|ref|ZP_16188954.1| ribonuclease H [Francisella tularensis subsp. tularensis AS_713]
gi|421753774|ref|ZP_16190763.1| ribonuclease H [Francisella tularensis subsp. tularensis 831]
gi|421755219|ref|ZP_16192169.1| ribonuclease H [Francisella tularensis subsp. tularensis 80700075]
gi|421757497|ref|ZP_16194377.1| ribonuclease H [Francisella tularensis subsp. tularensis 80700103]
gi|421759355|ref|ZP_16196188.1| ribonuclease H [Francisella tularensis subsp. tularensis 70102010]
gi|422938635|ref|YP_007011782.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC200]
gi|423050562|ref|YP_007008996.1| ribonuclease H [Francisella tularensis subsp. holarctica F92]
gi|424674673|ref|ZP_18111589.1| ribonuclease H [Francisella tularensis subsp. tularensis 70001275]
gi|122325296|sp|Q0BMB7.1|RNH_FRATO RecName: Full=Ribonuclease H; Short=RNase H
gi|123094521|sp|Q2A3X6.1|RNH_FRATH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611371|sp|A7NBM9.1|RNH_FRATF RecName: Full=Ribonuclease H; Short=RNase H
gi|187611372|sp|A0Q6W0.1|RNH_FRATN RecName: Full=Ribonuclease H; Short=RNase H
gi|187611373|sp|A4IYE6.1|RNH_FRATW RecName: Full=Ribonuclease H; Short=RNase H
gi|187611425|sp|Q14IN1.2|RNH_FRAT1 RecName: Full=Ribonuclease H; Short=RNase H
gi|238691548|sp|B2SFV9.1|RNH_FRATM RecName: Full=Ribonuclease H; Short=RNase H
gi|89144045|emb|CAJ79293.1| Ribonuclease H [Francisella tularensis subsp. holarctica LVS]
gi|115129580|gb|ABI82767.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
gi|118423585|gb|ABK89975.1| ribonuclease H [Francisella novicida U112]
gi|134049876|gb|ABO46947.1| RNase H [Francisella tularensis subsp. tularensis WY96-3418]
gi|134253356|gb|EBA52450.1| hypothetical protein FTHG_00794 [Francisella tularensis subsp.
holarctica 257]
gi|156252876|gb|ABU61382.1| RNase H [Francisella tularensis subsp. holarctica FTNF002-00]
gi|187712351|gb|ACD30648.1| Ribonuclease H [Francisella tularensis subsp. mediasiatica FSC147]
gi|194322015|gb|EDX19497.1| RNase H [Francisella tularensis subsp. novicida FTE]
gi|208744198|gb|EDZ90498.1| RNase H [Francisella novicida FTG]
gi|282158885|gb|ADA78276.1| Ribonuclease H [Francisella tularensis subsp. tularensis NE061598]
gi|332678392|gb|AEE87521.1| Ribonuclease HI [Francisella cf. novicida Fx1]
gi|407293786|gb|AFT92692.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC200]
gi|409086456|gb|EKM86575.1| ribonuclease H [Francisella tularensis subsp. tularensis 831]
gi|409086644|gb|EKM86760.1| ribonuclease H [Francisella tularensis subsp. tularensis AS_713]
gi|409088554|gb|EKM88618.1| ribonuclease H [Francisella tularensis subsp. tularensis 80700075]
gi|409091081|gb|EKM91086.1| ribonuclease H [Francisella tularensis subsp. tularensis 70102010]
gi|409092585|gb|EKM92556.1| ribonuclease H [Francisella tularensis subsp. tularensis 80700103]
gi|417434717|gb|EKT89659.1| ribonuclease H [Francisella tularensis subsp. tularensis 70001275]
gi|421951284|gb|AFX70533.1| ribonuclease H [Francisella tularensis subsp. holarctica F92]
Length = 152
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>gi|334345092|ref|YP_004553644.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
gi|334101714|gb|AEG49138.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
Length = 148
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N G G+G + FGE G+V + TNN E+ A+ AL+
Sbjct: 6 EVEIFTDGACKGNPGPG---GWGAVLRFGEKEKDISGGEV--QTTNNRMEMMAAVQALET 60
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DS++++ + +W+ WQ NGW+ AD KPV+N EL +LL +
Sbjct: 61 LKRPC--RVTLYTDSKYVMDGITKWVFGWQKNGWKTADKKPVKNA-ELWQLLVKAAARHQ 117
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V W++V GH N +AD++A AA
Sbjct: 118 VTWQWVKGHAGHPENERADQLACAAA 143
>gi|56460795|ref|YP_156076.1| ribonuclease HI [Idiomarina loihiensis L2TR]
gi|81821750|sp|Q5QZL3.1|RNH_IDILO RecName: Full=Ribonuclease H; Short=RNase H
gi|56179805|gb|AAV82527.1| Ribonuclease HI [Idiomarina loihiensis L2TR]
Length = 157
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 1 MDPDNHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M V ++TDG+C P G GA YG + E L+ ++T TNN E+
Sbjct: 1 MSNSKTVHLYTDGSCLGNPGPGGYGAVLEYGKHHKE---LSQGYRLT---TNNRMEMLAT 54
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I L++ K + V + +DSQ++ + V++WM +W+ NGWR + K V+NK+ Q+L +
Sbjct: 55 IAGLRELKRSC--HVILTTDSQYVKQGVEQWMHRWKQNGWRTSARKAVKNKDLWQQLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ + V+W+++ GH N + DE+ARDAA
Sbjct: 113 VNR-HKVEWKWIKGHSGHKQNERCDELARDAA 143
>gi|13787086|pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+ N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSALGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W++ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HA--EVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N +ADE+AR AA
Sbjct: 119 EWVKGHAGHPENERADELARAAA 141
>gi|296136537|ref|YP_003643779.1| Ribonuclease H [Thiomonas intermedia K12]
gi|295796659|gb|ADG31449.1| Ribonuclease H [Thiomonas intermedia K12]
Length = 151
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ DN ++++TDGAC N G G+GV + TNN E+ AI AL
Sbjct: 4 ESDNEIIIYTDGACKGNPGPG---GWGVVLRSGAHEKTLHGGEPQTTNNRMELMAAIMAL 60
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K + RV + +DSQ+++K + EW+ W+ GW AD KPV+N +L + L +
Sbjct: 61 EALKRPS--RVLLHTDSQYVLKGMTEWIVGWKRRGWTTADKKPVKNV-DLWQRLEKAAAP 117
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+++W +V GH GN +AD +A
Sbjct: 118 HTLRWVWVRGHTGDPGNEQADALA 141
>gi|56707717|ref|YP_169613.1| ribonuclease H [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670188|ref|YP_666745.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC198]
gi|254369208|ref|ZP_04985220.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
gi|254370223|ref|ZP_04986229.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
gi|254373045|ref|ZP_04988534.1| ribonuclease H [Francisella tularensis subsp. novicida GA99-3549]
gi|254374497|ref|ZP_04989978.1| ribonuclease H [Francisella novicida GA99-3548]
gi|254874531|ref|ZP_05247241.1| ribonuclease H [Francisella tularensis subsp. tularensis MA00-2987]
gi|379716968|ref|YP_005305304.1| Ribonuclease HI [Francisella tularensis subsp. tularensis TIGB03]
gi|379725572|ref|YP_005317758.1| ribonuclease HI [Francisella tularensis subsp. tularensis TI0902]
gi|56604209|emb|CAG45223.1| Ribonuclease H [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320521|emb|CAL08606.1| Ribonuclease H [Francisella tularensis subsp. tularensis FSC198]
gi|151568467|gb|EDN34121.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
gi|151570772|gb|EDN36426.1| ribonuclease H [Francisella novicida GA99-3549]
gi|151572216|gb|EDN37870.1| ribonuclease H [Francisella novicida GA99-3548]
gi|157122158|gb|EDO66298.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
gi|254840530|gb|EET18966.1| ribonuclease H [Francisella tularensis subsp. tularensis MA00-2987]
gi|377827021|gb|AFB80269.1| Ribonuclease HI [Francisella tularensis subsp. tularensis TI0902]
gi|377828645|gb|AFB78724.1| Ribonuclease HI [Francisella tularensis subsp. tularensis TIGB03]
Length = 160
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 16 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 71
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 72 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 129
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 130 TWGWVKGHSGNAGNEKADELANKA 153
>gi|409394827|ref|ZP_11245974.1| ribonuclease H [Pseudomonas sp. Chol1]
gi|409120476|gb|EKM96820.1| ribonuclease H [Pseudomonas sp. Chol1]
Length = 151
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G +Y G L G+ + TNN E+ AI AL +
Sbjct: 3 DELVEIYTDGACKGNPGPGGWGALLIYKGVKREL-WGGE--AQTTNNRMELMAAIRALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +VC+ +DSQ++++ + +W+P W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRPC--QVCLVTDSQYVMQGINDWLPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD +A
Sbjct: 117 VSWKWVRGHTGHPGNEQADLLA 138
>gi|374702135|ref|ZP_09709005.1| ribonuclease H [Pseudomonas sp. S9]
Length = 150
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 12/143 (8%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N VG V+ G L T TNN E+ AI AL
Sbjct: 4 QVEIYTDGACKGNPGVGGWGALLVFKGVEKELWGGEAET---TNNRMELTAAIRAL---- 56
Query: 66 SANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A + R C + +DSQ++++ +Q+WMP W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 57 -AELKRECNVRLVTDSQYVMQGIQDWMPNWKKRGWKTAAKQPVKNADLWQQLDEQVNRHQ 115
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD++A
Sbjct: 116 -VTWQWVRGHTGHPGNERADQLA 137
>gi|310831474|ref|YP_003970117.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
gi|309386658|gb|ADO67518.1| putative ribonuclease H1 [Cafeteria roenbergensis virus BV-PW1]
Length = 164
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 1 MDPDN-HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
M DN FTDG+ N + G+GVYF + LN++ K+ G+VTNN AE+ +
Sbjct: 1 MQKDNKFYYFFTDGSSKGNQFKNPTGGFGVYFPHHPELNISKKLEGKVTNNIAELSAVYY 60
Query: 60 A-LKQAKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
LK + +++ + I SDS+++I + +W W+ N W+KADG P+QN+ ++++ +
Sbjct: 61 GILKLIRKVKVNKPIIIVSDSKYIIDSITKWAKGWEKNNWKKADGTPIQNEILIKKIYYL 120
Query: 118 IGQM 121
+ +
Sbjct: 121 VNNL 124
>gi|288940137|ref|YP_003442377.1| ribonuclease H [Allochromatium vinosum DSM 180]
gi|288895509|gb|ADC61345.1| ribonuclease H [Allochromatium vinosum DSM 180]
Length = 147
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V FTDGAC N G G+GV +GE G+ TNN E+ I AL+
Sbjct: 5 VEAFTDGACKGNPGPG---GWGVLLRWGEVEKELHGGERE--TTNNRMELMAVIMALEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K R I +DSQ++ + V EWMP+W+ NGWR AD +PV+N++ + L +GQ E V
Sbjct: 60 KRPTPIR--ITTDSQYVKRGVGEWMPRWKRNGWRTADRQPVKNRDLWERLDRALGQHE-V 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH N +AD +A
Sbjct: 117 SWRWVKGHAGHAENERADWLA 137
>gi|432717224|ref|ZP_19952227.1| ribonuclease HI [Escherichia coli KTE9]
gi|431267224|gb|ELF58744.1| ribonuclease HI [Escherichia coli KTE9]
Length = 155
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + ++
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IR 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|381153618|ref|ZP_09865487.1| ribonuclease HI [Methylomicrobium album BG8]
gi|380885590|gb|EIC31467.1| ribonuclease HI [Methylomicrobium album BG8]
Length = 148
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++TDGAC N G G+GV + TNN E+ AI L+ K
Sbjct: 5 VVIYTDGACRGNPGPG---GWGVILSYKGAVKELYGGEMETTNNRMELTAAIQGLEALKK 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DS+++++ + EW+P W+ GW+ A KPV+N E+L L G +++W
Sbjct: 62 QC--RVELNTDSKYVLQGITEWLPNWKKRGWKTAGNKPVKN-EDLWRRLDAAGSRHTIEW 118
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH N +ADE+A
Sbjct: 119 KWVKGHSGHKENDRADELA 137
>gi|146307094|ref|YP_001187559.1| ribonuclease H [Pseudomonas mendocina ymp]
gi|189043703|sp|A4XU11.1|RNH_PSEMY RecName: Full=Ribonuclease H; Short=RNase H
gi|145575295|gb|ABP84827.1| RNase HI [Pseudomonas mendocina ymp]
Length = 150
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G VY G L T TNN E+ AI
Sbjct: 1 MSETDEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPST---TNNRMELMAAIAG 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L + R C + +DSQ+++K +QEW+P W+ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----IALTRPCSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + + V W++V GH GN +AD++A
Sbjct: 113 VNRHQ-VSWQWVRGHTGHPGNERADQLA 139
>gi|354596499|ref|ZP_09014516.1| Ribonuclease H [Brenneria sp. EniD312]
gi|353674434|gb|EHD20467.1| Ribonuclease H [Brenneria sp. EniD312]
Length = 154
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSAGYRLT---TNNRMELMAAIAALETLTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L Q Q +++W
Sbjct: 62 PC--EVVLSTDSQYVRQGITKWIHNWKKRGWKTADKKPVKNV-DLWQRLDQAIQHHTLRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARSAA 141
>gi|62257916|gb|AAX77753.1| unknown protein [synthetic construct]
Length = 195
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 42 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 97
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 98 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 155
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 156 TWGWVKGHSGNAGNEKADELANKA 179
>gi|345302744|ref|YP_004824646.1| ribonuclease H [Rhodothermus marinus SG0.5JP17-172]
gi|345111977|gb|AEN72809.1| Ribonuclease H [Rhodothermus marinus SG0.5JP17-172]
Length = 162
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P HVV++TDGAC N G G+ N V TNN E+ I AL+
Sbjct: 4 PRKHVVIYTDGACSGNPGPG---GWAAILRYNQHEKVLQGAEAHTTNNRMELTAVIEALR 60
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K RV + +DS ++++ QE W+ +WQ NGWR A KPV+N++ + LL ++ +
Sbjct: 61 ALKEPC--RVDVYTDSNYIVRAFQEGWVERWQRNGWRTASKKPVENQDLWRALL-ELTRR 117
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDA 148
V++ V GH + N + D +A +A
Sbjct: 118 HDVRFLKVKGHADDALNNRVDRLAVEA 144
>gi|258450505|gb|ACV72182.1| ribonuclease H [uncultured organism]
Length = 148
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V FTDGAC N G G+GV + TNN E++ AI AL K
Sbjct: 4 VEAFTDGACRGNPGPG---GWGVVLRAGEHVKELSGGEPNTTNNRMELKAAIEALAALKQ 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DS ++ + EW+P W++ GWR AD KPV+N++ Q L Q + E V W
Sbjct: 61 PC--RVALYTDSVYVRSGITEWLPAWRARGWRTADRKPVKNQDLWQALADQAARHE-VAW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N +ADE+A
Sbjct: 118 HWVKGHSGHPENERADELA 136
>gi|403059611|ref|YP_006647828.1| ribonuclease H [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402806937|gb|AFR04575.1| ribonuclease H [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 154
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q SV+W
Sbjct: 61 TDCD-VVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|374849922|dbj|BAL52924.1| ribonuclease H [uncultured beta proteobacterium]
Length = 153
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V+++TDGAC N G + G L+ + T TNN E+Q I AL+
Sbjct: 2 DDSVIIYTDGACSGNPGPGGWGAVLRWRGRERQLSGSEAHT---TNNRMELQAVIAALEA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V I +DSQ++ K V EW+P+W++ WR A G V N+ +L E L +
Sbjct: 59 LKRPVP--VTIYTDSQYVQKGVTEWLPRWKARQWRTASGHAVANR-DLWERLDDLATQLP 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
+ W +V GH GN AD +AR A
Sbjct: 116 ITWCWVKGHDGVAGNELADRLARQA 140
>gi|268317538|ref|YP_003291257.1| ribonuclease H [Rhodothermus marinus DSM 4252]
gi|262335072|gb|ACY48869.1| ribonuclease H [Rhodothermus marinus DSM 4252]
Length = 159
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P HVV++TDGAC N G G+ N V TNN E+ I AL+
Sbjct: 4 PRKHVVIYTDGACSGNPGPG---GWAAILRYNQHEKVLTGAAPHTTNNRMELTAVIEALR 60
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K RV + +DS ++++ QE W+ +WQ NGWR A KPV+N++ + LL ++ +
Sbjct: 61 ALKEPC--RVDVYTDSNYIVRAFQEGWVDRWQRNGWRTASKKPVENQDLWRALL-ELTRR 117
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDA 148
V++ V GH + N + D +A +A
Sbjct: 118 HDVRFLKVKGHADDALNNRVDRLAVEA 144
>gi|375259127|ref|YP_005018297.1| ribonuclease HI [Klebsiella oxytoca KCTC 1686]
gi|365908605|gb|AEX04058.1| ribonuclease HI [Klebsiella oxytoca KCTC 1686]
Length = 155
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G+ + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGKEKTFSEGFNLT---TNNRMEMMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HKIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARSAA 141
>gi|296129039|ref|YP_003636289.1| ribonuclease H [Cellulomonas flavigena DSM 20109]
gi|296020854|gb|ADG74090.1| ribonuclease H [Cellulomonas flavigena DSM 20109]
Length = 157
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N VG G+G + FG+ G+ TNN E+ I L+
Sbjct: 13 VEMWTDGACKGNPGVG---GWGAWMRFGDQERELWGGEAA--TTNNRMELSAVIEGLRAL 67
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV + DS +++ +Q+W+P W+ NGWR D KPV+N+E Q L ++ Q V
Sbjct: 68 KRPC--RVTLHVDSTYVMNGLQKWLPNWKRNGWRTGDKKPVKNQELWQALDTEV-QRHHV 124
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 125 TWVWVKGHAGDPGNERADALA 145
>gi|154246299|ref|YP_001417257.1| ribonuclease H [Xanthobacter autotrophicus Py2]
gi|154160384|gb|ABS67600.1| Ribonuclease H [Xanthobacter autotrophicus Py2]
Length = 151
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V VFTDGAC N G G+G + FG + G+ TNN E+ GAI AL+
Sbjct: 4 VAVFTDGACSGNPGPG---GWGAILRFGAHEKELSGGEAL--TTNNRMELMGAIAALEAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DS ++ V +WM W+ NGWR AD KPV+N ++L E L + ++
Sbjct: 59 KEPCT--VDLHTDSNYLKDGVTKWMHGWKRNGWRTADKKPVKN-QDLWERLDAALKRHTL 115
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
+W +V GH N +ADE+AR
Sbjct: 116 RWHWVKGHAGHAENERADELAR 137
>gi|389689539|ref|ZP_10178757.1| ribonuclease HI [Microvirga sp. WSM3557]
gi|388590029|gb|EIM30315.1| ribonuclease HI [Microvirga sp. WSM3557]
Length = 160
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N ++FTDGAC N G A GE + + T TNN E+ AI AL +A
Sbjct: 3 NEAIIFTDGACLGNPGPGGYAAVVTIAGEEQVIVGRNRST---TNNKMEMTAAIKAL-EA 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
++ + I SDSQ++IK EW+ W++ GWRKADGKPV N +EL + + ++
Sbjct: 59 VPQDLP-IVIHSDSQYVIKGATEWLRGWKAKGWRKADGKPVLN-QELWMQMDAVMVGRTI 116
Query: 125 KWEFVPGHGNSHGNMKADEMA-----RDAAG 150
W++V GH N + D +A R AAG
Sbjct: 117 TWKWVKGHAGHPENERVDRLANWEAVRAAAG 147
>gi|294012805|ref|YP_003546265.1| ribonuclease HI [Sphingobium japonicum UT26S]
gi|390167606|ref|ZP_10219588.1| ribonuclease H [Sphingobium indicum B90A]
gi|292676135|dbj|BAI97653.1| ribonuclease HI [Sphingobium japonicum UT26S]
gi|389589775|gb|EIM67788.1| ribonuclease H [Sphingobium indicum B90A]
Length = 148
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N G G+G + FGE G+ + TNN E+ A+ AL+
Sbjct: 6 QVEIFTDGACKGNPGPG---GWGAVLRFGEKEKEISGGEA--QTTNNRMEMMAAVQALET 60
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DS++++ + +W+ WQ NGW+ AD KPV+N E QEL+ +
Sbjct: 61 LKRPC--RVTLHTDSKYVMDGITKWVFGWQKNGWKTADRKPVKNAELWQELVRAAAR-HK 117
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V W++V GH N +AD++A AA
Sbjct: 118 VTWQWVKGHAGHPENERADQLACAAA 143
>gi|109898680|ref|YP_661935.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
gi|123064526|sp|Q15TA7.1|RNH_PSEA6 RecName: Full=Ribonuclease H; Short=RNase H
gi|109700961|gb|ABG40881.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
Length = 153
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H+ ++TDG+C N G GYG N + TNN E+ I AL A
Sbjct: 3 HIEIYTDGSCLGNPGPG---GYGAVLLFNQHSKELSQGFVHTTNNRMELLATIEAL--AS 57
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + +W+ W+ NGWR +D KPV+N + + L Q+G+ + VK
Sbjct: 58 LTETCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVGRHD-VK 116
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N + D +ARDAA
Sbjct: 117 WHWVKGHSGHPMNERCDVLARDAA 140
>gi|383649022|ref|ZP_09959428.1| ribonuclease H [Sphingomonas elodea ATCC 31461]
Length = 148
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV + TDGAC N G G+G TNN E+ AI LK K
Sbjct: 7 HVEIATDGACKGNPGPG---GWGALLRMGEVEKELSGGEAHTTNNRMELMAAIEGLKALK 63
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + +DS++++ + +W+ W NGWR AD KPV+N + QELL + V+
Sbjct: 64 RPC--RVTLSTDSRYVMDGLTKWIHGWMKNGWRTADKKPVKNADLWQELL-AAAKPHRVE 120
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N +AD++A DAA
Sbjct: 121 WKWVKGHAGHPDNERADKLASDAA 144
>gi|399521042|ref|ZP_10761814.1| rnhA [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399111531|emb|CCH38373.1| rnhA [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 150
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G VY G L T TNN E+ AI
Sbjct: 1 MSETDEVVIYTDGACKGNPGPGGWGALLVYKGAEKELWGGDPNT---TNNRMELMAAIAG 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L + R C + +DSQ+++K +QEW+P W+ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----IALTRPCSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + + V W++V GH GN +AD++A
Sbjct: 113 VNRHQ-VSWQWVRGHTGHPGNERADQLA 139
>gi|160286375|pdb|2Z1H|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT92KQ105KQ113RQ115KN143KT145K)
Length = 155
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+KAD KPV+N + + L +G+ +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKKADKKPVKNVDLWKRLDAALGR-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|292493432|ref|YP_003528871.1| ribonuclease H [Nitrosococcus halophilus Nc4]
gi|291582027|gb|ADE16484.1| ribonuclease H [Nitrosococcus halophilus Nc4]
Length = 147
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G Y G L+ + R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLRYRGREKTLS---GMETRTTNNRMELMAAIQALESLKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ + + WMP+W+ GW+ A+ +PV+N++ Q L + + V+W
Sbjct: 62 PC--RVRLTTDSQYLRQGITCWMPRWKQRGWKTANRQPVKNRDLWQRLERAVAPHQ-VEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH N +AD +AR A
Sbjct: 119 FWVRGHEGHPENERADALARKA 140
>gi|269140167|ref|YP_003296868.1| ribonuclease H [Edwardsiella tarda EIB202]
gi|387868687|ref|YP_005700156.1| Ribonuclease HI [Edwardsiella tarda FL6-60]
gi|267985828|gb|ACY85657.1| ribonuclease H [Edwardsiella tarda EIB202]
gi|304560000|gb|ADM42664.1| Ribonuclease HI [Edwardsiella tarda FL6-60]
Length = 154
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYRLT---TNNRMELMAAIVALETLT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
SA +V + SDSQ++ + + +W+ W+ GW+ AD KPV+N + Q L IG + V+
Sbjct: 61 SAC--QVTLFSDSQYVRQGITQWIHGWKRRGWKTADKKPVKNVDLWQRLDQAIGPHQ-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W ++ GH N + DE+AR AAG
Sbjct: 118 WIWIKGHAGHPENERCDELARSAAG 142
>gi|12084647|pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+ N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSALGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HA--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N +ADE+AR AA
Sbjct: 119 EWVKGHAGHPENERADELARAAA 141
>gi|28899067|ref|NP_798672.1| ribonuclease H [Vibrio parahaemolyticus RIMD 2210633]
gi|260876851|ref|ZP_05889206.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|260899808|ref|ZP_05908203.1| ribonuclease HI [Vibrio parahaemolyticus AQ4037]
gi|417319206|ref|ZP_12105764.1| ribonuclease H [Vibrio parahaemolyticus 10329]
gi|433658370|ref|YP_007275749.1| Ribonuclease HI [Vibrio parahaemolyticus BB22OP]
gi|31076862|sp|Q87MG2.1|RNH_VIBPA RecName: Full=Ribonuclease HI; Short=RNase HI
gi|28807291|dbj|BAC60556.1| ribonuclease HI [Vibrio parahaemolyticus RIMD 2210633]
gi|308091477|gb|EFO41172.1| ribonuclease HI [Vibrio parahaemolyticus AN-5034]
gi|308107271|gb|EFO44811.1| ribonuclease HI [Vibrio parahaemolyticus AQ4037]
gi|328474396|gb|EGF45201.1| ribonuclease H [Vibrio parahaemolyticus 10329]
gi|432509058|gb|AGB10575.1| Ribonuclease HI [Vibrio parahaemolyticus BB22OP]
Length = 154
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ + K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V
Sbjct: 61 EPC--RVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|330813660|ref|YP_004357899.1| homoserine kinase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486755|gb|AEA81160.1| homoserine kinase [Candidatus Pelagibacter sp. IMCC9063]
Length = 141
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 7 VVVFTDGACPRN-GKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ ++TDGAC N GK G +A V + N ++G TNN E+ I+AL++
Sbjct: 5 ITIYTDGACSGNPGKGGWAA---VIIEDKNEKTISGS-EQLTTNNRMELSAVINALREVA 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
SA +D I +DS+++ ++ W+ W+ NGW A +PV+NK+ EL + + +++
Sbjct: 61 SAELD---IYTDSKYVKNGIESWIKNWKINGWMTAAKQPVKNKDLWLELDTLVSE-KAIG 116
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
W++V GH N H N DE AR A
Sbjct: 117 WKWVKGHSNDHYNTIVDEAARKA 139
>gi|408389469|gb|EKJ68917.1| hypothetical protein FPSE_10894 [Fusarium pseudograminearum CS3096]
Length = 680
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 14/157 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV------------TNNNAEI 54
++++TDG+C NG+ A G+ V FG ++P + V+GR+ T+N AE+
Sbjct: 310 LLLYTDGSCLNNGQSDARGGWSVSFGTDDPHLGSSAVSGRLEEMGPFGDREKATSNRAEL 369
Query: 55 QGAIHALKQA--KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ 112
+ I AL+ + K V I +DS +++ +W W SN WR DG PV+NK+ +
Sbjct: 370 RAVIAALRLSDWKKEGFTSVVIATDSTYVLSGATKWAKAWVSNRWRLHDGTPVKNKDLWE 429
Query: 113 ELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
LL ++ + ++ E + H N +ADE AR AA
Sbjct: 430 LLLGEVERWDNEGVEVCLLNIPRHLNQEADEAARVAA 466
>gi|189490395|ref|YP_001956963.1| putative RnhA [Pseudomonas phage 201phi2-1]
gi|164609460|gb|ABY63069.1| hypothetical RnhA [Pseudomonas phage 201phi2-1]
Length = 486
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 41 GKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKA 100
GKV GR TNN AE+ AI K A + + ++ DS+++IK + +W+ KW W K
Sbjct: 71 GKVEGRATNNTAELTAAIEGFKLAFESGAQSLVMRPDSEYVIKGLTQWVHKWIKANWLKP 130
Query: 101 DGKPVQNKEELQELLHQIGQME----SVKWEFVPGHGNSHGNMKADEMARDAAG 150
DG P +NKE +LL Q + + +K E+V GH N GN KAD+ A G
Sbjct: 131 DGTPRENKELWLDLLEQKKRWDDRGYKLKIEWVKGHSNDIGNDKADQNALRGGG 184
>gi|157833659|pdb|1RDB|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN ++ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMQLMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|322511036|gb|ADX06349.1| putative ribonuclease H1 [Organic Lake phycodnavirus 2]
Length = 198
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
++ D+++ V+ DG+C NGK A AG G+YFGEN+P NV+ + G +NN AE+ I
Sbjct: 52 LNQDSNIYVYCDGSCIHNGKSNAKAGIGIYFGENDPRNVSETINGH-SNNVAELIAMIRV 110
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
K + I SDS++ + CV+E+ K + + W+ + P Q EL + L+Q +
Sbjct: 111 YHYVKK----DITIVSDSKYALHCVKEYGKKQEIDLWK--NNIPNQ---ELVKQLYQTYK 161
Query: 121 MESVKWEFVPGHGN-----SHGNMKADEMARDAA 149
++++ V H N S GN AD++A D+
Sbjct: 162 DTNIQFMHVYAHTNKKDIHSIGNSMADKLAYDSV 195
>gi|418293010|ref|ZP_12904934.1| ribonuclease H [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379064417|gb|EHY77160.1| ribonuclease H [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 151
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI AL +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIQALTE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRSC--KVRLVTDSQYVMQGINDWMPSWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V WE+V GH GN AD +A
Sbjct: 117 VSWEWVRGHTGHPGNEHADLLA 138
>gi|297560924|ref|YP_003679898.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296845372|gb|ADH67392.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 160
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+P VV++TDGAC N G G+GV+ +G + G+ + TNN E+ AI
Sbjct: 13 EPTQRVVIYTDGACSGNPGPG---GWGVWLRYGGHEKELYGGEA--QTTNNRMELMAAIR 67
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL+ + V + +DS ++ + W+ W+ GWR AD KPV+N +L + L ++
Sbjct: 68 ALESLRQPLP--VLVHTDSSYVRNGITSWLHGWKRRGWRTADKKPVKNV-DLWQRLDEVA 124
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMAR 146
V+W +V GH GN +AD +AR
Sbjct: 125 SRYEVEWRWVRGHSGDEGNERADALAR 151
>gi|422349973|ref|ZP_16430861.1| hypothetical protein HMPREF9465_01751 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657822|gb|EKB30704.1| hypothetical protein HMPREF9465_01751 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 157
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDGAC N +G Y V+ + K+T TNN E+ I AL +
Sbjct: 11 IWTDGACKCNPGIGGWGAYMVWGAHTREMYGGSKLT---TNNQMELTAVISAL-----SA 62
Query: 69 IDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ R C I +DS ++ + +W+ W+ NGWR AD KPV+N E Q+L Q + ++
Sbjct: 63 LRRKCPIIIHTDSSYVKDGITKWIHGWKRNGWRTADKKPVKNAELWQQLDELTSQFD-IE 121
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN KADE+A
Sbjct: 122 WRWVKGHAGDPGNEKADELA 141
>gi|399004765|ref|ZP_10707373.1| ribonuclease HI [Pseudomonas sp. GM17]
gi|425899240|ref|ZP_18875831.1| ribonuclease HI [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397890556|gb|EJL07038.1| ribonuclease HI [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398128681|gb|EJM18064.1| ribonuclease HI [Pseudomonas sp. GM17]
Length = 150
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V+ G L G+ TNN E+ AI L++
Sbjct: 3 DSVEIFTDGACKGNPGPGGWGALLVFKGVEKEL-WGGEAN--TTNNRMELMAAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + + V
Sbjct: 60 KREC--QVVLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWQQLDEQVNRHQ-V 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHTGHHGNERADQLA 137
>gi|415850026|ref|ZP_11527058.1| ribonuclease H [Shigella sonnei 53G]
gi|323165913|gb|EFZ51695.1| ribonuclease H [Shigella sonnei 53G]
Length = 155
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTST---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|394988927|ref|ZP_10381762.1| ribonuclease H [Sulfuricella denitrificans skB26]
gi|393792306|dbj|GAB71401.1| ribonuclease H [Sulfuricella denitrificans skB26]
Length = 158
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V ++TDGAC N VG + Y G L K+T TNN E+ I AL+
Sbjct: 15 NIVEIYTDGACKGNPGVGGWGAWLRYSGHEKELCGGEKLT---TNNRMELTAVIRALEAL 71
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
I R + +DS+++ K + EW+ W+ GWR AD KPV+N ++L L + +
Sbjct: 72 SRPCIVR--LHTDSKYVQKGISEWIHAWKLRGWRTADKKPVKN-DDLWRQLDVLAAQHEI 128
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W ++ GH GN +AD +A
Sbjct: 129 EWLWIKGHAGHEGNERADRLA 149
>gi|227329797|ref|ZP_03833821.1| ribonuclease H [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 154
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAALETLTT 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A +C +DSQ++ + + W+ W+ GW+ AD KPV+N + Q+L I Q SV+W
Sbjct: 62 ACDVVLC--TDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQKLDAAI-QHHSVQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|227112970|ref|ZP_03826626.1| ribonuclease H [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 154
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q SV+W
Sbjct: 61 TDCD-VVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDIAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|389684046|ref|ZP_10175377.1| ribonuclease HI [Pseudomonas chlororaphis O6]
gi|388552385|gb|EIM15647.1| ribonuclease HI [Pseudomonas chlororaphis O6]
Length = 150
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V+ G L G+ TNN E+ AI L++
Sbjct: 3 DSVEIFTDGACKGNPGPGGWGALLVFKGVEKEL-WGGEAN--TTNNRMELMAAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + + V
Sbjct: 60 KREC--QVILVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWQQLDEQVNRHQ-V 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHTGHHGNERADQLA 137
>gi|423118796|ref|ZP_17106480.1| ribonuclease H [Klebsiella oxytoca 10-5246]
gi|376400540|gb|EHT13152.1| ribonuclease H [Klebsiella oxytoca 10-5246]
Length = 155
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYG + + TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGAILRYRGKEKIFSQGYHLTTNNRMEMMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EQC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|308198441|pdb|3AA4|A Chain A, A52v E.Coli Rnase Hi
Length = 155
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAVIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|170767817|ref|ZP_02902270.1| ribonuclease H [Escherichia albertii TW07627]
gi|170123305|gb|EDS92236.1| ribonuclease H [Escherichia albertii TW07627]
Length = 155
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N + DE+AR AA
Sbjct: 118 WQWVKGHAGHPENERCDELARAAA 141
>gi|423106772|ref|ZP_17094467.1| ribonuclease H [Klebsiella oxytoca 10-5243]
gi|423112654|ref|ZP_17100345.1| ribonuclease H [Klebsiella oxytoca 10-5245]
gi|376388898|gb|EHT01590.1| ribonuclease H [Klebsiella oxytoca 10-5243]
gi|376390148|gb|EHT02834.1| ribonuclease H [Klebsiella oxytoca 10-5245]
Length = 155
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G+ + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGKEKTFSEGFNLT---TNNRMEMMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|374366284|ref|ZP_09624365.1| ribonuclease H [Cupriavidus basilensis OR16]
gi|373102068|gb|EHP43108.1| ribonuclease H [Cupriavidus basilensis OR16]
Length = 150
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 1 MDPDN--HVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQG 56
M+P V++++DGAC N G G+G G N G+ TNN E+
Sbjct: 1 MEPSEIEDVIIYSDGACKGNPGRG---GWGAVLVSGTNEKELFGGEAL--TTNNRMEMTA 55
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
I AL+ K R+ + +DSQ++ K + EW+P W++ GW+ AD KPV+N + QE +
Sbjct: 56 VIEALRALKRRC--RIKVYTDSQYVQKGIGEWLPGWKARGWKTADKKPVKNADLWQE-MD 112
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMA 145
++ Q + W +V GH GN +AD +A
Sbjct: 113 KLAQQHDISWHWVRGHNGHPGNERADALA 141
>gi|164660740|ref|XP_001731493.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
gi|159105393|gb|EDP44279.1| hypothetical protein MGL_1676 [Malassezia globosa CBS 7966]
Length = 304
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL----NVAGKVTGRV-TNNNAEIQGA 57
PD ++V+TDG+ NGK G+ AGYGVY+ + PL NVA ++ G V TNN AE+
Sbjct: 152 PDE-IIVYTDGSSHGNGKRGSIAGYGVYWAD--PLYHRQNVAARLPGPVQTNNRAELTAI 208
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
+ A++ + + I +DS++ I+ + +W+ +W++N W+ + K V+N++ + +
Sbjct: 209 LIAIRTLPDPSRP-LHIYTDSRYAIQAINKWIVQWRANNWKTSTKKDVENRDLFEAIQDA 267
Query: 118 IGQMESVK-WEFVPGHGNSHGNMKADEMARDAAG 150
I +V GH +GN+ AD++A + A
Sbjct: 268 INACRYRPVLTYVRGHAGHYGNVMADKLANEGAA 301
>gi|95928554|ref|ZP_01311301.1| ribonuclease H [Desulfuromonas acetoxidans DSM 684]
gi|95135344|gb|EAT16996.1| ribonuclease H [Desulfuromonas acetoxidans DSM 684]
Length = 147
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M HV +++DGAC N G GYG + + + TNN E+ GAI
Sbjct: 1 MSQKQHVEIYSDGACRGNPGPG---GYGTLLRCGSHIKELSGYEAQTTNNRMELLGAIAG 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K I V + +DSQ++ K + +W+ W+ GW+ + K V N+ +L E L + Q
Sbjct: 58 LEALKKPCI--VTLTTDSQYVYKGMTQWLSGWKKKGWKNSQKKDVLNR-DLWERLERAAQ 114
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDA 148
V W++V GH N + DE+AR A
Sbjct: 115 DHEVTWQWVKGHAGHEENERCDELARTA 142
>gi|402843898|ref|ZP_10892279.1| ribonuclease HI [Klebsiella sp. OBRC7]
gi|421725225|ref|ZP_16164423.1| ribonuclease HI [Klebsiella oxytoca M5al]
gi|423101403|ref|ZP_17089105.1| ribonuclease H [Klebsiella oxytoca 10-5242]
gi|423127527|ref|ZP_17115206.1| ribonuclease H [Klebsiella oxytoca 10-5250]
gi|376391191|gb|EHT03870.1| ribonuclease H [Klebsiella oxytoca 10-5242]
gi|376394566|gb|EHT07216.1| ribonuclease H [Klebsiella oxytoca 10-5250]
gi|402275940|gb|EJU25073.1| ribonuclease HI [Klebsiella sp. OBRC7]
gi|410374012|gb|EKP28695.1| ribonuclease HI [Klebsiella oxytoca M5al]
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G+ + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGKEKTFSEGFNLT---TNNRMEMMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HKIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|330503133|ref|YP_004380002.1| ribonuclease H [Pseudomonas mendocina NK-01]
gi|328917419|gb|AEB58250.1| ribonuclease H [Pseudomonas mendocina NK-01]
Length = 150
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G VY G L T TNN E+ AI
Sbjct: 1 MSETDEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPNT---TNNRMELMAAIAG 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L + R C + +DSQ+++K +QEW+P W+ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----IALTRPCSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + + V W++V GH GN +AD++A
Sbjct: 113 VNRHQ-VSWQWVRGHTGHPGNERADQLA 139
>gi|421484934|ref|ZP_15932499.1| ribonuclease H [Achromobacter piechaudii HLE]
gi|400196762|gb|EJO29733.1| ribonuclease H [Achromobacter piechaudii HLE]
Length = 153
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G G+GV + TNN E+ I L+
Sbjct: 8 DQKVEMWTDGACKGNPGPG---GWGVLMRAGGHEKTMHGGELQTTNNRMELLAVIEGLRA 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K A + V I +DSQ+++K + EW+ W+ GW AD KPV+N E Q L Q+ Q
Sbjct: 65 LKRACV--VTIHTDSQYVMKGMTEWLANWKRRGWMTADKKPVKNVELWQALDEQV-QRHQ 121
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN +AD++A
Sbjct: 122 VSWRWVRGHAGDPGNERADQLA 143
>gi|307941651|ref|ZP_07657006.1| ribonuclease HI [Roseibium sp. TrichSKD4]
gi|307775259|gb|EFO34465.1| ribonuclease HI [Roseibium sp. TrichSKD4]
Length = 150
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M + VV++TDGAC N G G+G + FG++ G+ G TNN E+ AI
Sbjct: 1 MSDEKRVVIYTDGACSGNPGPG---GWGAILRFGQHEKELSGGE--GETTNNRMELTAAI 55
Query: 59 HALKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
AL + R C + +DS ++ + EWM W++ GW+ AD KPV+N + QE L
Sbjct: 56 KALN-----TLTRPCAVDLYTDSTYVRSGISEWMKGWKARGWKTADKKPVKNADLWQE-L 109
Query: 116 HQIGQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ V W +V GH N +ADE+AR
Sbjct: 110 DEARDRHDVTWHWVKGHAGHPDNERADELAR 140
>gi|146282600|ref|YP_001172753.1| ribonuclease H [Pseudomonas stutzeri A1501]
gi|386020885|ref|YP_005938909.1| ribonuclease H [Pseudomonas stutzeri DSM 4166]
gi|187611395|sp|A4VLR0.1|RNH_PSEU5 RecName: Full=Ribonuclease H; Short=RNase H
gi|145570805|gb|ABP79911.1| ribonuclease H [Pseudomonas stutzeri A1501]
gi|327480857|gb|AEA84167.1| ribonuclease H [Pseudomonas stutzeri DSM 4166]
Length = 151
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI AL +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIRALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + E
Sbjct: 60 LKRPC--KVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHE- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD +A
Sbjct: 117 VSWQWVRGHTGHPGNEQADLLA 138
>gi|56966975|pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966976|pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966977|pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|56966978|pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
gi|61680231|pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
gi|61680232|pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN + AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMALMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W++ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|429213666|ref|ZP_19204830.1| ribonuclease H [Pseudomonas sp. M1]
gi|428155261|gb|EKX01810.1| ribonuclease H [Pseudomonas sp. M1]
Length = 148
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G Y G L G++ TNN E+ AI A
Sbjct: 1 MSEEEKVVIYTDGACKGNPGRGGWGAVLFYKGAEREL-WGGEL--ETTNNRMELTAAIMA 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L A + R C + +DS++++K ++EW+P W+ GW+ A +PV+N + Q L Q
Sbjct: 58 L-----AALKRSCEIRLVTDSEYVMKGIKEWLPNWKKRGWKTAAKQPVKNADLWQALDEQ 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + +V+W++V GH GN +AD +A
Sbjct: 113 VNR-HNVEWQWVRGHTGHPGNERADMLA 139
>gi|91223499|ref|ZP_01258764.1| ribonuclease H [Vibrio alginolyticus 12G01]
gi|269966276|ref|ZP_06180365.1| Ribonuclease HI [Vibrio alginolyticus 40B]
gi|451970892|ref|ZP_21924116.1| ribonuclease H [Vibrio alginolyticus E0666]
gi|91191585|gb|EAS77849.1| ribonuclease H [Vibrio alginolyticus 12G01]
gi|269829191|gb|EEZ83436.1| Ribonuclease HI [Vibrio alginolyticus 40B]
gi|451933309|gb|EMD80979.1| ribonuclease H [Vibrio alginolyticus E0666]
Length = 154
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ + K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V+
Sbjct: 61 QPC--KVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEMCDELARTAA 141
>gi|87119405|ref|ZP_01075303.1| ribonuclease HI, partial [Marinomonas sp. MED121]
gi|86165796|gb|EAQ67063.1| ribonuclease HI, partial [Marinomonas sp. MED121]
Length = 158
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV+++TDGAC N G + + FGE+ G+ TNN E+ GAI LK
Sbjct: 16 HVIIYTDGACKGNPGPGGWGAW-ITFGEHEKRLCGGE--NDTTNNRMELSGAIEGLKALT 72
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DS ++ K + +W+ W+ GW+ A +PV+NK +L + L + Q ++
Sbjct: 73 EPC--KVTLYTDSSYVQKGITQWLAGWKKKGWKTASKQPVKNK-DLWQALDEECQRHDIE 129
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W++V GH GN ADE+A
Sbjct: 130 WKWVKGHAGIKGNEIADELA 149
>gi|308198439|pdb|3AA2|A Chain A, A52i E. Coli Rnase Hi
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAIIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|308198440|pdb|3AA3|A Chain A, A52l E. Coli Rnase Hi
Length = 155
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMALIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|414176244|ref|ZP_11430473.1| ribonuclease H [Afipia broomeae ATCC 49717]
gi|410886397|gb|EKS34209.1| ribonuclease H [Afipia broomeae ATCC 49717]
Length = 149
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGDVEKELKGGENPS--TNNRMELMAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ + + +W+ W+ NGW+ AD KPV+N + Q L + + +
Sbjct: 63 LKKPAL--VDLTTDSQYVRQGITQWIHNWKRNGWKTADKKPVKNADLWQRLDAAL-KAHT 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++ARD
Sbjct: 120 VRWHWIKGHAGHAENERADQLARD 143
>gi|339494214|ref|YP_004714507.1| ribonuclease H [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338801586|gb|AEJ05418.1| ribonuclease H [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 151
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI AL +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIRALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + E
Sbjct: 60 LKRPC--KVQLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHE- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD +A
Sbjct: 117 VSWQWVRGHTGHPGNEQADLLA 138
>gi|422645852|ref|ZP_16708987.1| ribonuclease H [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330959401|gb|EGH59661.1| ribonuclease H [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 150
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWMP W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMPNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|254423771|ref|ZP_05037489.1| RNase H, putative [Synechococcus sp. PCC 7335]
gi|196191260|gb|EDX86224.1| RNase H, putative [Synechococcus sp. PCC 7335]
Length = 312
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P+ ++TDGAC N G G+G + F + + G+ + TNN E+Q AI A
Sbjct: 2 PNEVKEIYTDGACSGNPGPG---GWGTLIEFADGQRHELGGR-DAKTTNNRMEMQAAIAA 57
Query: 61 LKQAKSANIDR--VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--LH 116
L+ S +ID V + +DS+++ + +W+ W+ GW+ + GKPV NK+ Q+L L
Sbjct: 58 LEFLSSNSIDSGAVTLHTDSEYLKNGITKWIKGWKRKGWKTSSGKPVLNKDLWQQLDQLS 117
Query: 117 QIGQME--SVKWEFVPGHGNSHGNMKADEMARDAA 149
Q E ++ W +V GH + GN + DE+AR A
Sbjct: 118 QTLTTEQINIDWRYVRGHTGNLGNERCDEIARAYA 152
>gi|385870635|gb|AFI89155.1| Ribonuclease H [Pectobacterium sp. SCC3193]
Length = 154
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + + L I Q SV+W
Sbjct: 61 TDCD-VVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARTAA 141
>gi|408373755|ref|ZP_11171449.1| ribonuclease H [Alcanivorax hongdengensis A-11-3]
gi|407766459|gb|EKF74902.1| ribonuclease H [Alcanivorax hongdengensis A-11-3]
Length = 148
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N G G+GV +G G+ + TNN E+ AI AL+
Sbjct: 3 RVEIFTDGACKGNPGPG---GWGVLMIYGSREKTLCGGEA--QTTNNRMELMAAIQALEA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++ K + EWMP W+ GW+ A +PV+N +L + L Q
Sbjct: 58 LKQPC--QVALTTDSQYVRKGITEWMPNWKRRGWKTAARQPVKNA-DLWQRLDAATQRHD 114
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
++W +V GH GN +AD++A
Sbjct: 115 IQWHWVKGHSGHPGNERADQLA 136
>gi|431927203|ref|YP_007240237.1| ribonuclease HI [Pseudomonas stutzeri RCH2]
gi|431825490|gb|AGA86607.1| ribonuclease HI [Pseudomonas stutzeri RCH2]
Length = 151
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI AL +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPET---TNNRMELMAAISALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRSC--KVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V WE+V GH GN AD +A
Sbjct: 117 VSWEWVRGHTGHPGNEHADLLA 138
>gi|270263404|ref|ZP_06191673.1| ribonuclease H [Serratia odorifera 4Rx13]
gi|270042288|gb|EFA15383.1| ribonuclease H [Serratia odorifera 4Rx13]
Length = 177
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL +A
Sbjct: 26 QVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLT---TNNRMELMAAIVAL-EAL 81
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+A + V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q ++K
Sbjct: 82 TAPCE-VTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QTHTIK 139
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +ARDAAG
Sbjct: 140 WEWVKGHAGHPENERCDVLARDAAG 164
>gi|226361398|ref|YP_002779176.1| ribonuclease HI [Rhodococcus opacus B4]
gi|226239883|dbj|BAH50231.1| ribonuclease HI [Rhodococcus opacus B4]
Length = 178
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
A D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 A--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAIAERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|284044423|ref|YP_003394763.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283948644|gb|ADB51388.1| Ribonuclease H [Conexibacter woesei DSM 14684]
Length = 175
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
+V+TDGAC N G A V PL +G TNN E A+ ++ +
Sbjct: 27 LVWTDGACKGNPGPGGWAAIVVPADGGEPLEYSGGDPA-TTNNRMEYTAALEGMRSLPAG 85
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ RVCI +DSQ M+ + W+ W+ GW+ A G PV+N++ + L ++G+ E+V+W
Sbjct: 86 S--RVCIVTDSQLMLNSMTRWITGWKRKGWKTASGDPVKNQDLVMALDSEVGRHETVRWH 143
Query: 128 FVPGH--GNSHG----NMKADEM 144
+V GH G+ H N +AD +
Sbjct: 144 WVRGHETGDGHAHKALNDRADRL 166
>gi|429768950|ref|ZP_19301078.1| ribonuclease HI [Brevundimonas diminuta 470-4]
gi|429188301|gb|EKY29189.1| ribonuclease HI [Brevundimonas diminuta 470-4]
Length = 150
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF----GENNPLNVAGKVTGRVTNNNAEIQG 56
M+P++HV++ TDGAC N G G+G G L +T TNN E+
Sbjct: 1 MNPNDHVIIHTDGACKGNPGPG---GWGAILQTGGGHEKELWGGEALT---TNNRMELMA 54
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
AI AL+ K RV + +DS+++++ V EW+ W++ GW+ AD KPV+N E+L L
Sbjct: 55 AIMALEALKRPC--RVDLHTDSKYVMQGVTEWIRGWKARGWKTADKKPVKN-EDLWRRLD 111
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ VKW +V GH N +AD +A
Sbjct: 112 EARSRHEVKWHWVKGHAGHALNERADGLA 140
>gi|426222090|ref|XP_004005236.1| PREDICTED: ribonuclease H1 [Ovis aries]
Length = 262
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 24/145 (16%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 137 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 196
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ +I ++ + +DS F I NG + A P +E+ Q G
Sbjct: 197 KAQDITKLVLYTDSMFTI------------NG-KSACPSP-------EEVWCQGG----T 232
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+ VPGH GN +AD +AR+ A
Sbjct: 233 QTMHVPGHSGFRGNEEADRLAREGA 257
>gi|383317697|ref|YP_005378539.1| ribonuclease HI [Frateuria aurantia DSM 6220]
gi|379044801|gb|AFC86857.1| ribonuclease HI [Frateuria aurantia DSM 6220]
Length = 149
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V FTDGAC N G G+ + TNN E+ GAI AL+
Sbjct: 2 TEVEAFTDGACLGNPGPG---GWAALLRSQGKQRLLAGGEADTTNNRMELMGAIAALEA- 57
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
++R C + +DS+++++ +++W+P+W++NGW+ AD KPV+N ++L E L
Sbjct: 58 ----LNRACQVRLVTDSKYVMQGIEQWVPRWRANGWKTADRKPVKN-QDLWERLDAAAGR 112
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
++WE+V GH N D+ AR+ A
Sbjct: 113 HQIRWEWVKGHAGHAENELVDDAAREQA 140
>gi|424861590|ref|ZP_18285536.1| ribonuclease HI [Rhodococcus opacus PD630]
gi|356660062|gb|EHI40426.1| ribonuclease HI [Rhodococcus opacus PD630]
Length = 177
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
A D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 A--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAISERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|146329571|ref|YP_001209986.1| RNase H [Dichelobacter nodosus VCS1703A]
gi|187611369|sp|A5EXP9.1|RNH_DICNV RecName: Full=Ribonuclease H; Short=RNase H
gi|146233041|gb|ABQ14019.1| RNase H [Dichelobacter nodosus VCS1703A]
Length = 150
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
+F DGAC N +G G+GV V TNN E+ AI ALK K
Sbjct: 8 IFVDGACKGNPGIG---GWGVLMRYGQHEKVLMGAQWHTTNNRMELTAAIEALKAIKRPC 64
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+ I +DS ++ + W+P W+ N WR A KP++N EL + L Q+ Q ++W +
Sbjct: 65 --PILISTDSVYVKNGITHWLPVWKKNNWRNASKKPIKNI-ELWQALDQLNQRYEIEWRW 121
Query: 129 VPGHGNSHGNMKADEMARDA 148
V GH + GN ADE+A A
Sbjct: 122 VKGHAGNPGNEIADELANRA 141
>gi|262393545|ref|YP_003285399.1| ribonuclease HI [Vibrio sp. Ex25]
gi|262337139|gb|ACY50934.1| ribonuclease HI [Vibrio sp. Ex25]
Length = 154
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ + K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V+
Sbjct: 61 QPC--KVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|157833658|pdb|1RDA|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FT+G+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTNGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|410694240|ref|YP_003624862.1| Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) [Thiomonas
sp. 3As]
gi|294340665|emb|CAZ89057.1| Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) [Thiomonas
sp. 3As]
Length = 151
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+ DN ++++TDGAC N G G+GV G + G++ + TNN E+ AI
Sbjct: 4 ESDNEIIIYTDGACKGNPGPG---GWGVVLRSGAHEKTLHGGEL--QTTNNRMELMAAIM 58
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL+ K + V + +DSQ+++K + EW+ W+ GW AD KPV+N +L + L +
Sbjct: 59 ALEALKRPS--HVLLHTDSQYVLKGMTEWIVGWKRRGWTTADKKPVKNV-DLWQRLEKAA 115
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
+++W +V GH GN +AD +A
Sbjct: 116 APHTLRWTWVRGHTGDPGNEQADALA 141
>gi|157833660|pdb|1RDC|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + ++SQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTNSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|157831636|pdb|1KVC|A Chain A, E. Coli Ribonuclease Hi D134n Mutant
Length = 155
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + +E+AR AA
Sbjct: 118 WEWVKGHAGHPENERCNELARAAA 141
>gi|326480361|gb|EGE04371.1| hypothetical protein TEQG_08666 [Trichophyton equinum CBS 127.97]
Length = 220
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 1 MDPD-NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAI 58
++P+ +++ DGAC NG A GVY G + N + ++ TN AE+ I
Sbjct: 60 LEPNLRSIIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGI 119
Query: 59 HALKQAKSAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
+ L A+ N + V IK+DS +M+ + +W+ +W++NG+ ADG+ V N
Sbjct: 120 YGLDAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYL 179
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+EL ++ ++ + H N +AD++ARDA
Sbjct: 180 FKELSWRVRELAESHVKVYFWHVRREHNREADQLARDA 217
>gi|308198442|pdb|3AA5|X Chain X, A52f E.Coli Rnase Hi
Length = 155
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAFIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|320536287|ref|ZP_08036330.1| ribonuclease HI [Treponema phagedenis F0421]
gi|320146847|gb|EFW38420.1| ribonuclease HI [Treponema phagedenis F0421]
Length = 151
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M+ ++ + V+TDGAC N G A V G+ AG+ TNN E+ I+A
Sbjct: 1 MNTESLIEVYTDGACSGNPGPGGWAFVMVIDGKEPFTQSAGE--KLTTNNRMELAAVINA 58
Query: 61 LKQAKSANID--RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
L QA S N R+C+ +DSQ++ + EW+ KW+ NGW+ A +PV+N ++L LL ++
Sbjct: 59 L-QAISQNYASARICLYTDSQYVKNGITEWIQKWKKNGWKTASKQPVKN-QDLWLLLDKL 116
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+W +V GH + N DE+A AA
Sbjct: 117 SSELKPEWNWVKGHAGNKFNELCDELAVAAA 147
>gi|407473698|ref|YP_006788098.1| ribonuclease H [Clostridium acidurici 9a]
gi|407050206|gb|AFS78251.1| ribonuclease H [Clostridium acidurici 9a]
Length = 150
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+ ++++TDGAC N G+G + + ++ G++ TNN EI+ I ALK
Sbjct: 2 DKIIIYTDGACSGNQNNENIGGFGAVLLYKDHKKEVYGGEIN--TTNNRMEIKACIEALK 59
Query: 63 QAKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K +I V + +DS ++ C+ Q+W KW+SNGW + +PV+NKE ELL I +
Sbjct: 60 TLKRKDIP-VEVYTDSAYVCNCINQKWYIKWRSNGWINSKKEPVENKELWMELLDLIESL 118
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
E++K+ V GH N AD +A
Sbjct: 119 ENLKFIKVKGHSGVELNELADSLA 142
>gi|261820458|ref|YP_003258564.1| ribonuclease H [Pectobacterium wasabiae WPP163]
gi|261604471|gb|ACX86957.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
Length = 154
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + + L I Q SV+W
Sbjct: 61 TDCD-VVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|421781805|ref|ZP_16218267.1| ribonuclease H [Serratia plymuthica A30]
gi|407756035|gb|EKF66156.1| ribonuclease H [Serratia plymuthica A30]
Length = 155
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL +A
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLT---TNNRMELMAAIVAL-EAL 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+A + V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q ++K
Sbjct: 60 TAPCE-VTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QTHTIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +ARDAAG
Sbjct: 118 WEWVKGHAGHPENERCDVLARDAAG 142
>gi|375266402|ref|YP_005023845.1| ribonuclease H [Vibrio sp. EJY3]
gi|369841722|gb|AEX22866.1| ribonuclease H [Vibrio sp. EJY3]
Length = 154
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYGV + K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGVVLRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + E V+
Sbjct: 61 EPC--KVSLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKEPPRHE-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|410636531|ref|ZP_11347125.1| ribonuclease HI [Glaciecola lipolytica E3]
gi|410144143|dbj|GAC14330.1| ribonuclease HI [Glaciecola lipolytica E3]
Length = 152
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H+ +FTDG+C N G GYG N + TNN E+ AI AL
Sbjct: 3 HITIFTDGSCLGNPGPG---GYGAVLKFNQHNKEISQGFKHTTNNRMELLAAIEALNTLT 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
A +V + +DSQ++ + +W+ W+ NGWR +D K V+N +L + L + + +
Sbjct: 60 EAC--QVTLTTDSQYVKNGINQWIKNWKKNGWRTSDKKAVKN-ADLWKRLDALAEKHKID 116
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N + DE+AR AA
Sbjct: 117 WQWVKGHSGHPENERCDELARTAA 140
>gi|333925717|ref|YP_004499296.1| ribonuclease H [Serratia sp. AS12]
gi|333930670|ref|YP_004504248.1| ribonuclease H [Serratia plymuthica AS9]
gi|386327541|ref|YP_006023711.1| Ribonuclease H [Serratia sp. AS13]
gi|333472277|gb|AEF43987.1| Ribonuclease H [Serratia plymuthica AS9]
gi|333489777|gb|AEF48939.1| Ribonuclease H [Serratia sp. AS12]
gi|333959874|gb|AEG26647.1| Ribonuclease H [Serratia sp. AS13]
Length = 155
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLT---TNNRMELMAAIVALEALT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q ++K
Sbjct: 61 TPC--EVTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QTHTIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +ARDAAG
Sbjct: 118 WEWVKGHAGHPENERCDVLARDAAG 142
>gi|85714345|ref|ZP_01045333.1| ribonuclease H [Nitrobacter sp. Nb-311A]
gi|85698792|gb|EAQ36661.1| ribonuclease H [Nitrobacter sp. Nb-311A]
Length = 151
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGDIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ + + W+ W+ NGWR AD KPV+N + Q L + Q
Sbjct: 63 LKRPAL--VDLTTDSQYVRQGIMSWIHNWKRNGWRTADKKPVKNADLWQRLDAAL-QPHQ 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++AR+
Sbjct: 120 VRWHWIKGHDGHSENERADQLARE 143
>gi|341898712|gb|EGT54647.1| hypothetical protein CAEBREN_13715 [Caenorhabditis brenneri]
Length = 161
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSA 67
++TDG+ NG+ GA GYGV + + +G T G TNN E++ A + A+
Sbjct: 7 IYTDGSAVNNGRAGARGGYGVVCESDRSRDTSGSFTHGNQTNNRYELEAIKKATEIARDV 66
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES---- 123
N + IKSDS++ +K + W W+ NGWR + G+PVQN++ +Q + + + +
Sbjct: 67 NHRDINIKSDSEYAVKSLNTWSKNWEQNGWRTSSGQPVQNQDLIQSINRNVSDLRASGKN 126
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V +E V GH + N +AD +AR AA
Sbjct: 127 VGFEHVRGHQTDYHNNEADRLARTAA 152
>gi|386826046|ref|ZP_10113160.1| ribonuclease H [Serratia plymuthica PRI-2C]
gi|386377060|gb|EIJ17883.1| ribonuclease H [Serratia plymuthica PRI-2C]
Length = 155
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLT---TNNRMELMAAIVALEALT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q ++K
Sbjct: 61 TPC--EVTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QTHTIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +ARDAAG
Sbjct: 118 WEWVKGHAGHPENERCDVLARDAAG 142
>gi|407716216|ref|YP_006837496.1| ribonuclease H [Cycloclasticus sp. P1]
gi|407256552|gb|AFT66993.1| Ribonuclease H [Cycloclasticus sp. P1]
Length = 145
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N +G Y G + G++ TNN E+ I ALK K
Sbjct: 6 VQIYTDGACRGNPGIGGWGASLQYNGTKKEI-YGGEL--ETTNNRMELTAVIEALKLLKE 62
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ I SDS++++ + EW+P W+ W+ A KPV+N + Q+ L + Q ++KW
Sbjct: 63 P--AELTINSDSKYVLSGINEWLPNWKKRNWKTASRKPVKNVDLWQQ-LDALAQPHTIKW 119
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH + GN +ADE+A
Sbjct: 120 VWVKGHSGNVGNDRADELA 138
>gi|255725980|ref|XP_002547916.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133840|gb|EER33395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 284
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 22/160 (13%)
Query: 8 VVFTDGACPRNG-KVGASAGYGVYFGENNPLNVAGKV-------TGRVTNNNAEIQGAIH 59
VV+ DGAC NG K SAGYGVY+G N+ N A + R TN AE+ H
Sbjct: 114 VVYIDGACRGNGNKYNTSAGYGVYYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHALNH 173
Query: 60 ALKQAKSANIDRVC-----IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE- 113
L S + C I++DS F+I + W KW +NGW G V N + +QE
Sbjct: 174 VLLNINSDIQNDECYRKTEIRTDSMFVINSITNWCYKWCNNGWNNVKGDTVANVDLIQEN 233
Query: 114 --LLHQIG-QMESVKW---EF--VPGHGNSHGNMKADEMA 145
L++ I + E W EF V GH +GN +AD +A
Sbjct: 234 FNLMNSINEEYEDRGWGDIEFKHVRGHSGDYGNDEADRLA 273
>gi|61680233|pdb|1WSF|A Chain A, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
gi|61680234|pdb|1WSF|B Chain B, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
gi|61680235|pdb|1WSF|C Chain C, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
gi|61680236|pdb|1WSF|D Chain D, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
Length = 155
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W++ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + E+AR AA
Sbjct: 118 WEWVKGHAGHPENERCAELARAAA 141
>gi|170044850|ref|XP_001850044.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867969|gb|EDS31352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 290
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 31/145 (21%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D D V V+TDG+ NG A AG GVYFGE + LN G
Sbjct: 144 DEDGFVYVYTDGSWEGNGTAAACAGLGVYFGEGHALNAQG-------------------- 183
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK---EELQELLHQI 118
I R+ + +DS+F++ + +W+P W+ N W+ + GKPV+N+ EEL L ++
Sbjct: 184 -------IKRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQEL 236
Query: 119 GQME-SVKWEFVPGHGNSHGNMKAD 142
+ +KW H GN +AD
Sbjct: 237 AEKSIKIKWNHADAHCVILGNERAD 261
>gi|253988341|ref|YP_003039697.1| putative DNA replication ribonuclease HI [Photorhabdus asymbiotica]
gi|253779791|emb|CAQ82952.1| putative DNA replication ribonuclease HI [Photorhabdus asymbiotica]
Length = 171
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYGV + TNN E+ AI L+
Sbjct: 20 VEIFTDGSCLGNPGPG---GYGVLLRYQQHERTLSQGFHHTTNNRMELMAAIIGLETLTR 76
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + +W+ W+ GWRKAD PV N + Q L I + + + W
Sbjct: 77 PC--KIVLTTDSQYVRQGITKWIHNWKRRGWRKADKSPVSNVDLWQRLDQAITRHD-IDW 133
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH H N + DE+AR AA
Sbjct: 134 QWVKGHAGHHENERCDELARTAA 156
>gi|50557008|ref|XP_505912.1| YALI0F26543p [Yarrowia lipolytica]
gi|49651782|emb|CAG78724.1| YALI0F26543p [Yarrowia lipolytica CLIB122]
Length = 281
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALK--QA 64
+ +TDGAC NG G GVYFGE +P N +G + G V TN AE+ + AL+
Sbjct: 128 LAYTDGACENNGGHRPKGGIGVYFGELHPCNYSGPLVGDVQTNQRAELSAILKALEIIDN 187
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK-------EELQELLHQ 117
+ N++ I+SDSQ+ + C +W+ W+ NG++ GK V+N+ E LQ+ +
Sbjct: 188 RGENLNWQ-IRSDSQYAVNCCSQWLEGWKKNGFKTGKGKEVENQDLILAIDEYLQKPRTR 246
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMAR 146
IG + ++ +PGH N + D +A+
Sbjct: 247 IGT--RITFKHIPGHAGE--NEEVDALAK 271
>gi|341887045|gb|EGT42980.1| hypothetical protein CAEBREN_03086 [Caenorhabditis brenneri]
Length = 140
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 11/145 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE++ N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGARAGYGVYFGEDSQYNRSGRVVGPQDSNRGELRAAQVAIDSAK 63
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM-ESV 124
S + + I +DSQ++ V +QS G QN++ +Q + + V
Sbjct: 64 SQGLGSITIHTDSQYVRDAV-HGASGFQSAG---------QNRDLMQSIHDSVRTTGMRV 113
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
E V GH N GN A ++A A
Sbjct: 114 NVELVKGHSNDAGNDAAHKLATQGA 138
>gi|298293043|ref|YP_003694982.1| ribonuclease H [Starkeya novella DSM 506]
gi|296929554|gb|ADH90363.1| ribonuclease H [Starkeya novella DSM 506]
Length = 171
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P V V+TDGAC N G Y G L+ T TNN E+ AI AL+
Sbjct: 19 PKGIVAVWTDGACSGNPGPGGWGAILRYAGAEKELSGGESPT---TNNRMELMAAISALE 75
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K V + +DS+++ + +W+ W+ NGWR AD KPV+N +L E L +
Sbjct: 76 ALKRPCT--VDLHTDSEYLRNGITKWIAGWKRNGWRTADKKPVKNV-DLWERLESAMERH 132
Query: 123 SVKWEFVPGHGNSHGNMKADEMAR 146
++W +V GH N +ADE+AR
Sbjct: 133 EIRWHWVKGHAGDEMNERADELAR 156
>gi|363420063|ref|ZP_09308158.1| ribonuclease HI [Rhodococcus pyridinivorans AK37]
gi|359736169|gb|EHK85117.1| ribonuclease HI [Rhodococcus pyridinivorans AK37]
Length = 176
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + AL+
Sbjct: 6 IIVSTDGSCLRN--PGGAIGWA-WVNHEGPSASGGERSG--TNQIAELRAVLEALRAHPG 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG-QMESVK 125
A + + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N E ++ + ++ + V+
Sbjct: 61 A--EPMIIESDSQYAIKCASEWLPGWKRKGWKTATGAPVKNLELVRAIDRELTDRTGPVR 118
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A AA
Sbjct: 119 FRWVRGHVGNHFNEMADTLAGQAA 142
>gi|50543708|ref|XP_500020.1| YALI0A12705p [Yarrowia lipolytica]
gi|49645885|emb|CAG83949.1| YALI0A12705p [Yarrowia lipolytica CLIB122]
Length = 236
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
V V+TDGAC N A AG GVYFG +P NV+ V G R TN AE++ AIH +
Sbjct: 88 VPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELE-AIHDAVETI 146
Query: 66 SANIDRVC--IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM-E 122
D + +K+DS + +W WQ N W + +PVQ+++ ++ L+++ + +
Sbjct: 147 HRRNDGINYEVKTDSAYAQNAFNKWGSNWQQNNWTTSKNEPVQHRDLIEPTLNRLNDLGD 206
Query: 123 SVKWEFVPGHGNSHGNMKADEMA-RDAAGW 151
V+ V GH + GN AD++A + A GW
Sbjct: 207 RVEISKVKGHSGNPGNDAADKLAGKGARGW 236
>gi|326475291|gb|EGD99300.1| hypothetical protein TESG_06569 [Trichophyton tonsurans CBS 112818]
Length = 220
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Query: 1 MDPD-NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAI 58
++P+ +++ DGAC NG A GVY G + N + ++ TN AE+ I
Sbjct: 60 LEPNLRSIIIAVDGACSENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGI 119
Query: 59 HALKQAKSAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
+ L A+ N + V IK+DS +M+ + +W+ +W++NG+ ADG+ V N
Sbjct: 120 YGLDAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYL 179
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+EL + ++ + H N +AD++ARDA
Sbjct: 180 FKELSWSVRELAESHVKVYFWHVRREHNREADQLARDA 217
>gi|344343524|ref|ZP_08774392.1| Ribonuclease H [Marichromatium purpuratum 984]
gi|343804947|gb|EGV22845.1| Ribonuclease H [Marichromatium purpuratum 984]
Length = 143
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +TDGAC N G G+GV +GE G+ TNN E+ I AL+
Sbjct: 5 VHAYTDGACKGNPGPG---GWGVLLCWGEAEKSLCGGER--ETTNNRMELMAVIMALESL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K ++ + I +DSQ++ + V EWMP+W+ NGWR A +PV+N+ +L E L V
Sbjct: 60 KRSS--EIEITTDSQYVKRGVGEWMPRWKRNGWRTASRQPVKNR-DLWERLDAALADHQV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH GN +AD++A
Sbjct: 117 RWHWVKGHAGHPGNERADQLA 137
>gi|157831635|pdb|1KVB|A Chain A, E. Coli Ribonuclease Hi D134h Mutant
Length = 155
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + E+AR AA
Sbjct: 119 EWVKGHAGHPENERCHELARAAA 141
>gi|325673034|ref|ZP_08152728.1| ribonuclease H [Rhodococcus equi ATCC 33707]
gi|325556287|gb|EGD25955.1| ribonuclease H [Rhodococcus equi ATCC 33707]
Length = 184
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C +N G + G+ + P G V+G TN AE+ + A+
Sbjct: 2 IIVSTDGSCLKN--PGGAIGW-AWVDHEGPSRSGGAVSG--TNQIAELWALVEAI--VAH 54
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
+ + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N E +Q++ I + V+
Sbjct: 55 PGPEPLLIESDSQYAIKCASEWLPGWKRKGWKTASGGPVKNLELVQDIDRAITERSGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD++A +AA
Sbjct: 115 FRWVRGHVGNHFNEIADKLAGEAA 138
>gi|312141706|ref|YP_004009042.1| ribonuclease h [Rhodococcus equi 103S]
gi|311891045|emb|CBH50364.1| putative ribonuclease H [Rhodococcus equi 103S]
Length = 184
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C +N G + G+ + P G V+G TN AE+ + A+
Sbjct: 2 IIVSTDGSCLKN--PGGAIGW-AWVDHEGPSRSGGAVSG--TNQIAELWALVEAI--VAH 54
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
+ + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N E +Q++ I + V+
Sbjct: 55 PGPEPLLIESDSQYAIKCASEWLPGWKRKGWKTASGGPVKNLELVQDIDRAITERSGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD++A +AA
Sbjct: 115 FRWVRGHVGNHFNEIADKLAGEAA 138
>gi|114706694|ref|ZP_01439595.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
gi|114538086|gb|EAU41209.1| ribonuclease H [Fulvimarina pelagi HTCC2506]
Length = 153
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M +N V ++TDGAC N G G+GV FGE++ G+ TNN E+ AI
Sbjct: 1 MSKENRVEIYTDGACSGNPGPG---GWGVLLRFGEHSKELKGGEAN--TTNNRMELLAAI 55
Query: 59 HALKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
AL K R C + SDS +M + +W+ W+ NGW+ AD KPV+N E Q L
Sbjct: 56 EALSALK-----RPCAIDLHSDSSYMRDGIMKWIHGWKKNGWKTADKKPVKNAELWQRLD 110
Query: 116 HQIGQMESVKWEFVPGHGNSHGNMKADEMARD 147
+ + + V + +V GH GN +AD++A D
Sbjct: 111 EERSRHD-VTFHWVKGHAGHEGNERADQLAND 141
>gi|325983346|ref|YP_004295748.1| ribonuclease H [Nitrosomonas sp. AL212]
gi|325532865|gb|ADZ27586.1| Ribonuclease H [Nitrosomonas sp. AL212]
Length = 151
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N +G Y + K+T TNN E+ AI AL+ K
Sbjct: 9 VEIYTDGACKGNPGIGGWGALLRYGDHEREIFGGEKLT---TNNRMELLAAIRALESLKR 65
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ K + EW+ W++ W AD KPV+N E+L +LL Q+ Q ++W
Sbjct: 66 PC--KIHLHTDSQYLQKGISEWLDSWKARNWCTADKKPVKN-EDLWKLLDQLTQQHEIEW 122
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N +AD++A
Sbjct: 123 CWVRGHSGHIDNERADQLA 141
>gi|392546171|ref|ZP_10293308.1| RNase HI, degrades RNA of DNA-RNA hybrids [Pseudoalteromonas rubra
ATCC 29570]
Length = 155
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDG+C N G GYGVY G LN ++T TNN E+ AI AL+
Sbjct: 5 VEIYTDGSCLGNPGPG---GYGVYLSYQGHEKTLNAGYRLT---TNNRMEMLAAIVALET 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++ + ++ W+ W+ W+ A KPV+N + Q L + Q +
Sbjct: 59 LKRPC--QVILYTDSQYVKQGIESWLANWKKRNWKTAAKKPVKNVDLWQRLDAAV-QRHT 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAAG 150
++W +V GH + N D++AR+AAG
Sbjct: 116 IEWRWVKGHAGNKYNELVDDLAREAAG 142
>gi|302503386|ref|XP_003013653.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
gi|291177218|gb|EFE33013.1| hypothetical protein ARB_00100 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ TN AE+ I+ L A+
Sbjct: 41 IIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGIYGLDAAR 100
Query: 66 SAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
N + V IK+DS +M+ + +W+ +W++NG+ ADG+ V N +EL +
Sbjct: 101 EINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKELSWR 160
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+ + + H N +AD++ARDA
Sbjct: 161 VRDLAESHVKVYFWHVRREHNREADQLARDA 191
>gi|323143748|ref|ZP_08078416.1| ribonuclease HI [Succinatimonas hippei YIT 12066]
gi|322416461|gb|EFY07127.1| ribonuclease HI [Succinatimonas hippei YIT 12066]
Length = 154
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDG+C N G GYGV + + TNN EI I L+Q K
Sbjct: 6 LYTDGSCLNNPGPG---GYGVILKYKEHVKELSCGYLQTTNNRMEIMAVIVGLEQLKEPC 62
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
V + SDSQ++ + W+ W+ NGW ++ KPV+NK +L + L + Q VKWE+
Sbjct: 63 C--VTVTSDSQYVKNGITSWIKTWKRNGWMTSNKKPVKNK-DLWQRLDSLCQKHLVKWEW 119
Query: 129 VPGHGNSHGNMKADEMARDAA 149
V GH N + DE+AR AA
Sbjct: 120 VKGHAGHAENERCDELARAAA 140
>gi|410617613|ref|ZP_11328578.1| ribonuclease HI [Glaciecola polaris LMG 21857]
gi|410162744|dbj|GAC32716.1| ribonuclease HI [Glaciecola polaris LMG 21857]
Length = 153
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
H+ ++TDG+C N G GYG + FG+++ G + TNN E+ I AL
Sbjct: 3 HLEIYTDGSCLGNPGPG---GYGAVLVFGQHSKELSQGFI--HTTNNRMELLATIEAL-- 55
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A +V + +DSQ++ + +W+ W+ NGWR +D KPV+N + + L Q+ Q +
Sbjct: 56 ASLTETCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVNQHQ- 114
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N + D +ARDAA
Sbjct: 115 VEWHWVKGHSGHPMNERCDVLARDAA 140
>gi|423015625|ref|ZP_17006346.1| ribonuclease H [Achromobacter xylosoxidans AXX-A]
gi|338781380|gb|EGP45771.1| ribonuclease H [Achromobacter xylosoxidans AXX-A]
Length = 153
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G G+GV + TNN E+ I L+
Sbjct: 8 DQKVEMWTDGACKGNPGPG---GWGVLMRAGAHEKTMHGGEAQTTNNRMELLAVIEGLRA 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V I +DSQ+++K + EW+ W+ GW+ AD KPV+N E Q L Q+ + +
Sbjct: 65 LKRPCA--VTIHTDSQYVMKGMTEWLANWKRRGWKTADKKPVKNAELWQALDDQV-RRHT 121
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN +AD++A
Sbjct: 122 VSWRWVRGHAGDPGNERADQLA 143
>gi|269960616|ref|ZP_06174988.1| Ribonuclease HI [Vibrio harveyi 1DA3]
gi|269834693|gb|EEZ88780.1| Ribonuclease HI [Vibrio harveyi 1DA3]
Length = 154
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V
Sbjct: 61 EPC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|260947408|ref|XP_002618001.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
gi|238847873|gb|EEQ37337.1| hypothetical protein CLUG_01460 [Clavispora lusitaniae ATCC 42720]
Length = 303
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENNPLNVAGKV-----TGRV--TNNNAEIQGAIHA 60
V+ DGA NGK G +AGYGVYFG N+ NV+ + R+ TN AE+ +HA
Sbjct: 141 VYVDGAARGNGKSGIPNAGYGVYFGPNDKRNVSQGLHEVDDVDRIKPTNQRAELHALVHA 200
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A + I +DS + CV+ W KW++NGW G+ V NK+ +Q L + +
Sbjct: 201 LDVAAKDSTTGYEILTDSAYAKNCVETWADKWEANGWVNTRGEKVANKDLVQSALTKYRE 260
Query: 121 M-----ESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ V GH GN +AD +A A
Sbjct: 261 AKERHGDDFSITHVRGHSGIEGNEQADSLANKGA 294
>gi|284009179|emb|CBA76232.1| ribonuclease HI [Arsenophonus nasoniae]
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG+ + K R TNN E+ AI L+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGILLRYHKHEKTLSKGYFRTTNNRMELMAAIIGLETLKQ 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DSQ++ + + +W+ W+S WR+AD PV N + Q L I + + V+W
Sbjct: 62 PC--QVILTTDSQYVRQGITQWIHNWKSRQWRRADKSPVLNVDLWQRLDAAISRHQ-VEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR+AA
Sbjct: 119 HWVKGHAGHPENERCDELARNAA 141
>gi|429124572|ref|ZP_19185104.1| ribonuclease H [Brachyspira hampsonii 30446]
gi|426279583|gb|EKV56605.1| ribonuclease H [Brachyspira hampsonii 30446]
Length = 163
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 5/145 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L++ K ++ + + SDS +++ + +W+ WQ N W K+D KPV+NKE +L+ ++
Sbjct: 59 LERLKHSH--NIKLHSDSAYLVNGMTKWIYSWQKNNWIKSDKKPVENKEYWLKLI-ELSS 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++ + V GH N+ N +ADE+
Sbjct: 116 KHNIDFIKVKGHSNNKENNRADEIV 140
>gi|56966983|pdb|1WSJ|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966984|pdb|1WSJ|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966985|pdb|1WSJ|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966986|pdb|1WSJ|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966987|pdb|1WSJ|E Chain E, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966988|pdb|1WSJ|F Chain F, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966989|pdb|1WSJ|G Chain G, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
gi|56966990|pdb|1WSJ|H Chain H, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
Length = 155
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W++ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V G N + DE+AR AA
Sbjct: 118 WEWVKGAAGHPENERCDELARAAA 141
>gi|443894222|dbj|GAC71571.1| ribonuclease H [Pseudozyma antarctica T-34]
Length = 370
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGEN--NPLNVAGKVTGRV-TNNNAEIQGAIHALKQ 63
+V+ DG+ NGK GA AGYGV+F + + LN A ++ G++ TNN AE+ + A++
Sbjct: 219 TIVYCDGSATGNGKKGARAGYGVWFEDQALHHLNEARRLPGKIQTNNRAELLAIVRAIQL 278
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI-GQME 122
+ + ++ + +DSQ+ + +W+ W+ GW A GK V NK+ + +L H++ +
Sbjct: 279 CPN-DGRQLLVFTDSQYSMDAATKWIDGWRQRGWVTATGKEVLNKDLIVQLDHELTTRFP 337
Query: 123 SVKWEFVPGHGNSHGNMKADEMAR 146
FV GH GN AD MA+
Sbjct: 338 KPTMAFVKGHSGIEGNEIADRMAK 361
>gi|157831634|pdb|1KVA|A Chain A, E. Coli Ribonuclease Hi D134a Mutant
Length = 155
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + E+AR AA
Sbjct: 118 WEWVKGHAGHPENERCAELARAAA 141
>gi|302666602|ref|XP_003024898.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
gi|291188975|gb|EFE44287.1| hypothetical protein TRV_00903 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQAK 65
+++ DGAC NG A GVY G + N + ++ TN AE+ I+ L A+
Sbjct: 41 IIIAVDGACRENGAAAPRAAIGVYVGNKSDYNASMQLDPSWATNQKAELAAGIYGLDAAR 100
Query: 66 SAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
N + V IK+DS +M+ + +W+ +W++NG+ ADG+ V N +EL +
Sbjct: 101 EINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYLFKELSWR 160
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+ ++ + H N +AD++ARDA
Sbjct: 161 VRELAESHVKVYFWHVRREHNREADQLARDA 191
>gi|148264891|ref|YP_001231597.1| ribonuclease H [Geobacter uraniireducens Rf4]
gi|187611374|sp|A5G5F6.1|RNH_GEOUR RecName: Full=Ribonuclease H; Short=RNase H
gi|146398391|gb|ABQ27024.1| RNase HI [Geobacter uraniireducens Rf4]
Length = 147
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +F DGAC N VG G+G + + G TNN E+ AI AL K
Sbjct: 3 VEIFCDGACSGNPGVG---GWGSILRYGDTVKELSGADGDTTNNRMEMTAAIEALASLKR 59
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ+++K + EWM W GW + +PV N+ EL E L + ++ ++W
Sbjct: 60 PC--EVVLTTDSQYLVKGMTEWMSGWIRKGWVNSKKEPVLNR-ELWERLLALSKIHKIRW 116
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH N + DE+AR A
Sbjct: 117 AWVRGHNGHPENERCDELARAA 138
>gi|258627374|ref|ZP_05722158.1| Ribonuclease HI [Vibrio mimicus VM603]
gi|258580412|gb|EEW05377.1| Ribonuclease HI [Vibrio mimicus VM603]
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQT 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GWR AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKLRGWRTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|392411658|ref|YP_006448265.1| ribonuclease HI [Desulfomonile tiedjei DSM 6799]
gi|390624794|gb|AFM26001.1| ribonuclease HI [Desulfomonile tiedjei DSM 6799]
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G A Y G ++ + ++T TNN E+ AI AL+ K
Sbjct: 15 VEIFTDGACSGNPGPGGWAAILRYKGVVKQISGSERLT---TNNRMELTAAIKALEALKR 71
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ R+ +DSQ+++K + +W+ W+ NGW + KPV+N +L E L V+W
Sbjct: 72 PSVVRMT--TDSQYIMKGITQWIKSWKRNGWINSQKKPVKN-VDLWEKLDAAVSKHKVEW 128
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
++V GH N N AD +AR A
Sbjct: 129 QWVRGHNNHEENELADALARKA 150
>gi|421079736|ref|ZP_15540673.1| Ribonuclease H 1 [Pectobacterium wasabiae CFBP 3304]
gi|401705503|gb|EJS95689.1| Ribonuclease H 1 [Pectobacterium wasabiae CFBP 3304]
Length = 154
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKALSAGYRLT---TNNRMELMAAIAALETLTT 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q SV W
Sbjct: 62 GC--DVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAI-QSHSVHW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|157831221|pdb|1GOC|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
V + +DSQ++ + + Q W+ W+ GW+ AD KPV+N + Q L +GQ + +
Sbjct: 61 EHC--EVILSTDSQYVRQAITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-I 117
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
KWE+V GH N + DE+AR AA
Sbjct: 118 KWEWVKGHAGHPENERCDELARAAA 142
>gi|410421735|ref|YP_006902184.1| ribonuclease HI [Bordetella bronchiseptica MO149]
gi|427819775|ref|ZP_18986838.1| ribonuclease HI [Bordetella bronchiseptica D445]
gi|427825225|ref|ZP_18992287.1| ribonuclease HI [Bordetella bronchiseptica Bbr77]
gi|408449030|emb|CCJ60716.1| ribonuclease HI [Bordetella bronchiseptica MO149]
gi|410570775|emb|CCN18973.1| ribonuclease HI [Bordetella bronchiseptica D445]
gi|410590490|emb|CCN05580.1| ribonuclease HI [Bordetella bronchiseptica Bbr77]
Length = 155
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV + TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DSQ+++K + EW+ W+ GW AD KPV+N E Q L Q+G+ + V+
Sbjct: 69 RPC--RVTIHTDSQYVMKGMTEWLANWKRRGWLTADKKPVKNVELWQALDEQVGRHQ-VQ 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>gi|156975480|ref|YP_001446387.1| ribonuclease H [Vibrio harveyi ATCC BAA-1116]
gi|444427600|ref|ZP_21222975.1| ribonuclease H [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|189043721|sp|A7MY21.1|RNH_VIBHB RecName: Full=Ribonuclease H; Short=RNase H
gi|156527074|gb|ABU72160.1| hypothetical protein VIBHAR_03211 [Vibrio harveyi ATCC BAA-1116]
gi|444239124|gb|ELU50700.1| ribonuclease H [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 154
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + V
Sbjct: 61 EPC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETAR-HKVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|114332141|ref|YP_748363.1| ribonuclease H [Nitrosomonas eutropha C91]
gi|122313179|sp|Q0AE34.1|RNH_NITEC RecName: Full=Ribonuclease H; Short=RNase H
gi|114309155|gb|ABI60398.1| RNase HI [Nitrosomonas eutropha C91]
Length = 162
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N G G+GV + GE VT TNN E+ AI AL++
Sbjct: 10 VEIFTDGACKGNPGPG---GWGVCLHFNGETREFFGGEPVT---TNNRMELLAAIRALQE 63
Query: 64 AKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
+S + +V + +DSQ++ K + EW+ W+ GWR AD KPV+N E L L +
Sbjct: 64 LESLEDNGQQHLQVQLHTDSQYVQKGISEWIHGWKKRGWRTADKKPVKN-EALWRELDDL 122
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
Q V+W +V GH GN +AD +A
Sbjct: 123 SQRHQVEWFWVRGHNGHAGNERADRLA 149
>gi|452747028|ref|ZP_21946834.1| ribonuclease H [Pseudomonas stutzeri NF13]
gi|452009141|gb|EME01368.1| ribonuclease H [Pseudomonas stutzeri NF13]
Length = 151
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI L +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIRGLAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRSC--KVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V WE+V GH GN AD +A
Sbjct: 117 VSWEWVRGHNGHPGNEHADLLA 138
>gi|350532140|ref|ZP_08911081.1| ribonuclease H [Vibrio rotiferianus DAT722]
Length = 154
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKALAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V
Sbjct: 61 EPC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|388602546|ref|ZP_10160942.1| ribonuclease H [Vibrio campbellii DS40M4]
Length = 154
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + V
Sbjct: 61 EPC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETAR-HKVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARTAA 141
>gi|385677221|ref|ZP_10051149.1| ribonuclease HI [Amycolatopsis sp. ATCC 39116]
Length = 145
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 15/149 (10%)
Query: 9 VFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
++TDGAC P G GA YG + E + G G TNN E+ I AL+
Sbjct: 3 IYTDGACSGNPGPGGWGAVLRYGRHEKE-----LYGGEPGTTTNNRMELMAPIRALEALT 57
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
++ RV +DS ++ V +WMP+W++NGW+ A +PV+N + Q L IG E V+
Sbjct: 58 RPSVVRVY--TDSSYVRNGVTQWMPRWKTNGWQTASREPVKNADLWQRLDAAIGAHE-VQ 114
Query: 126 WEFVPGHGNSHGNMKADEM----ARDAAG 150
W ++ GH N +AD++ A++AAG
Sbjct: 115 WHWIKGHAGHPENERADKLAVRGAKEAAG 143
>gi|427715958|ref|YP_007063952.1| ribonuclease H [Calothrix sp. PCC 7507]
gi|427348394|gb|AFY31118.1| Ribonuclease H [Calothrix sp. PCC 7507]
Length = 303
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 9 VFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK- 65
++TDGAC N G G+G VYF +++ ++ G TNN EIQ AI AL+ +
Sbjct: 10 IYTDGACTGNPGPG---GWGTVVYFSDDS-IHEMGDAASHTTNNKMEIQAAIAALQYLQA 65
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S + + + +DS+++IK + +WM W+ GW+KADG PVQN++ LQ +L + +V
Sbjct: 66 SGQTEPITLYTDSEYVIKSITQWMKGWKKRGWKKADGNPVQNQDLLQ-ILDDLNSDLAVN 124
Query: 126 WEFVPGHGNSHGNMKADEMAR 146
W+ V GH + GN + D +AR
Sbjct: 125 WQHVRGHSGNIGNERCDAIAR 145
>gi|410625153|ref|ZP_11335941.1| ribonuclease HI [Glaciecola mesophila KMM 241]
gi|410155284|dbj|GAC22710.1| ribonuclease HI [Glaciecola mesophila KMM 241]
Length = 152
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H+ ++TDG+C N G GYG N + TNN E+ I AL A
Sbjct: 3 HIEIYTDGSCLGNPGPG---GYGAVLLFNQHSKELSQGFVHTTNNRMELLATIEAL--AS 57
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + +W+ W+ NGWR +D KPV+N + + L Q+ + + VK
Sbjct: 58 LTETCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVDRHD-VK 116
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N + D +ARDAA
Sbjct: 117 WHWVKGHSGHPMNERCDVLARDAA 140
>gi|392420968|ref|YP_006457572.1| ribonuclease H [Pseudomonas stutzeri CCUG 29243]
gi|390983156|gb|AFM33149.1| ribonuclease H [Pseudomonas stutzeri CCUG 29243]
Length = 151
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V ++TDGAC N G +Y G L T TNN E+ AI L +
Sbjct: 3 DDWVEIYTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDT---TNNRMELMAAIRGLAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + +V + +DSQ++++ + +WMP W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRSC--KVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V WE+V GH GN AD +A
Sbjct: 117 VSWEWVRGHTGHPGNEHADLLA 138
>gi|302666604|ref|XP_003024899.1| ribonuclease H1, putative [Trichophyton verrucosum HKI 0517]
gi|291188976|gb|EFE44288.1| ribonuclease H1, putative [Trichophyton verrucosum HKI 0517]
Length = 265
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 18/137 (13%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY------FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+V+ DGAC NG+ A GV+ F E+ PLN+ +N AEI IH
Sbjct: 26 LVISVDGACRGNGREHRDASAGVFVNQGSRFNESIPLNLDNP-----SNQKAEILAGIHG 80
Query: 61 LKQAKSAN---IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L +A+ + V I+SDS++M+K V EW +W+SNG+R A+G+PV N+E Q+L
Sbjct: 81 LNKAREMDGGPSRHVTIRSDSEYMVKGVNEWSRRWESNGYRAANGQPVVNRELFQQLNSA 140
Query: 118 IGQME----SVKWEFVP 130
+E V ++ VP
Sbjct: 141 RDSLERSGIKVDFQHVP 157
>gi|77166267|ref|YP_344792.1| ribonuclease H [Nitrosococcus oceani ATCC 19707]
gi|254435452|ref|ZP_05048959.1| RNase H [Nitrosococcus oceani AFC27]
gi|123730602|sp|Q3J7D4.1|RNH_NITOC RecName: Full=Ribonuclease H; Short=RNase H
gi|76884581|gb|ABA59262.1| Ribonuclease H [Nitrosococcus oceani ATCC 19707]
gi|207088563|gb|EDZ65835.1| RNase H [Nitrosococcus oceani AFC27]
Length = 147
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G Y G L+ A + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGACRGNPGPGGWGALLCYQGREKTLSGA---ESKTTNNRMELMAAIRALETLKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ + + W+ W+ GW+ A+ +PV+N +L + L Q+ ++W
Sbjct: 62 PC--RVHLTTDSQYLRQGITCWLSNWKRRGWKTANRQPVKNI-DLWQRLDQVAAQHRIEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH GN +AD +AR A
Sbjct: 119 FWVRGHEGHPGNERADALARSA 140
>gi|429333149|ref|ZP_19213854.1| ribonuclease H [Pseudomonas putida CSV86]
gi|428762155|gb|EKX84364.1| ribonuclease H [Pseudomonas putida CSV86]
Length = 148
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V ++TDGAC N G +Y G L + T TNN E+ AI L+
Sbjct: 3 DSVEIYTDGACKGNPGPGGWGVLMIYKGVEKELWGGERET---TNNRMELMAAIKGLEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + V
Sbjct: 60 RREC--EVLLVTDSQYVMKGITEWMTNWKKRGWKTAAKEPVKNADLWQLLDEQVNR-HKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH HGN +AD++A
Sbjct: 117 KWQWVRGHIGHHGNERADQLA 137
>gi|440683156|ref|YP_007157951.1| Ribonuclease H [Anabaena cylindrica PCC 7122]
gi|428680275|gb|AFZ59041.1| Ribonuclease H [Anabaena cylindrica PCC 7122]
Length = 302
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK-QAK 65
++TDGAC N G G+GV YF ++ ++ G + TNN E+Q AI AL+
Sbjct: 10 IYTDGACTGNPGPG---GWGVVVYF-QDGSIHEMGDASSHTTNNKMEMQAAIAALEFLET 65
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES-- 123
S + + +DS+++I V +WMP W+ GW+K+DG PVQN Q+LL + Q+ S
Sbjct: 66 SGQTQPITLYTDSEYLINSVTKWMPGWKKKGWKKSDGNPVQN----QDLLETLDQLNSRL 121
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAAG 150
VKW+ V GH + GN + D +AR A
Sbjct: 122 VKWQHVRGHSGNIGNERCDVIARSFAS 148
>gi|398792883|ref|ZP_10553422.1| ribonuclease HI [Pantoea sp. YR343]
gi|398211936|gb|EJM98548.1| ribonuclease HI [Pantoea sp. YR343]
Length = 155
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDG+C P G GA YG + E + ++T TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYGAHEKE---FSTGYRLT---TNNRMEMMAAIVALEA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + +DSQ++ + + W+ W+ GW+ AD KPV+N + + L + E
Sbjct: 59 LKQPC--EVVLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDVALSNHE- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAAG 150
+KWE+V GH N + DE+AR AAG
Sbjct: 116 IKWEWVKGHAGHPENERCDELARSAAG 142
>gi|237746598|ref|ZP_04577078.1| ribonuclease H [Oxalobacter formigenes HOxBLS]
gi|229377949|gb|EEO28040.1| ribonuclease H [Oxalobacter formigenes HOxBLS]
Length = 149
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V ++TDGAC N G G+GV+ N TNN E+ I AL+
Sbjct: 7 SEVEIYTDGACRGNPGPG---GWGVWLRANGHEKELFGGDADTTNNRMELTAVIEALRVL 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV + +DSQ++ K + EW+ KW+ GWR +D K V+N + E L + + +
Sbjct: 64 KRPC--RVVLHTDSQYVQKGITEWIHKWKERGWRTSDRKLVKNVDLWME-LDEATRRHDI 120
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH GN KAD++A
Sbjct: 121 RWRWVKGHAGHEGNEKADQLA 141
>gi|407894138|ref|ZP_11153168.1| ribonuclease H [Diplorickettsia massiliensis 20B]
Length = 154
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N GA A Y + L+ TNN E++ AI AL K
Sbjct: 11 RVEIFTDGACRGNPGPGAWAALLRYQTQEKELS---GTEAHTTNNRMELKAAIEALIALK 67
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
++ + +DSQ++ + + EW+P+WQ W+ A+ PV+N + Q+L+ ++ + + V+
Sbjct: 68 KPC--QIVLSTDSQYVKRGITEWVPQWQKRAWKTANRSPVKNSDLWQQLVQEVARHQ-VQ 124
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH N + D++A
Sbjct: 125 WRWVKGHSGHAENERVDKLA 144
>gi|345297983|ref|YP_004827341.1| ribonuclease H [Enterobacter asburiae LF7a]
gi|345091920|gb|AEN63556.1| Ribonuclease H [Enterobacter asburiae LF7a]
Length = 155
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSEGYRLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ E +K
Sbjct: 61 E-HCD-VVLSTDSQYVRQGITQWIFNWKKRGWKTADKKPVKNVDLWKRLDAALGQHE-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|256832142|ref|YP_003160869.1| ribonuclease H [Jonesia denitrificans DSM 20603]
gi|256685673|gb|ACV08566.1| ribonuclease H [Jonesia denitrificans DSM 20603]
Length = 175
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N VG G+GV+ TNN E+ I L+ K
Sbjct: 15 VTMWTDGACKGNPGVG---GWGVWMTSGAHTKELFGGENHTTNNRMELMAVIEGLRALK- 70
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
R C + DS +++K + W+ W+ NGWR AD KPV+N E +EL Q+ +
Sbjct: 71 ----RPCDVNLHVDSTYVMKGITSWIHGWKRNGWRTADKKPVKNAELWRELDDQVTR-HR 125
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN KADE+A
Sbjct: 126 VTWTWVKGHSGDVGNDKADELA 147
>gi|451992200|gb|EMD84713.1| hypothetical protein COCHEDRAFT_1199323 [Cochliobolus
heterostrophus C5]
gi|451995561|gb|EMD88029.1| hypothetical protein COCHEDRAFT_1197116 [Cochliobolus
heterostrophus C5]
Length = 308
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQAKSA 67
V TDG+ NGK A+AG GVYFG N+P N + G TN AE++ + AL+
Sbjct: 26 VSTDGSSLGNGKKKATAGVGVYFGPNDPRNYGEPLGPGPQTNQRAELKAVLKALQTIPIT 85
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV--- 124
+ I++DS + I V EW KW+ WRK G P +N + ++ + + + E++
Sbjct: 86 Q--NLLIETDSTYAIMSVTEWYYKWEWKSWRKGKGAPFKNIDLIKPSVGHLERREAIGSA 143
Query: 125 -KWEFVPGHGNSHGNMKADEMA 145
+ +V GH ++ GN AD++A
Sbjct: 144 TYFRWVKGHTDNPGNEAADKLA 165
>gi|452127343|ref|ZP_21939926.1| ribonuclease H [Bordetella holmesii F627]
gi|452130714|ref|ZP_21943286.1| ribonuclease H [Bordetella holmesii H558]
gi|451920639|gb|EMD70785.1| ribonuclease H [Bordetella holmesii H558]
gi|451922438|gb|EMD72583.1| ribonuclease H [Bordetella holmesii F627]
Length = 153
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P + V ++TDGAC N G G+GV TNN EI + L+
Sbjct: 7 PADLVEMWTDGACKGNPGPG---GWGVLMRSGGHEKTFFGGDANTTNNRMEILAVVEGLR 63
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K V + +DSQ+++K + EW+P W+ GW AD KPV+N E Q+L Q+ +
Sbjct: 64 ALKRPCT--VVVHTDSQYVMKGMTEWLPNWKRRGWLTADKKPVKNVELWQDLDAQVAR-H 120
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
SV W +V GH GN AD +A
Sbjct: 121 SVSWRWVRGHNGDPGNEMADMLA 143
>gi|384215077|ref|YP_005606242.1| ribonuclease H [Bradyrhizobium japonicum USDA 6]
gi|354953975|dbj|BAL06654.1| ribonuclease H [Bradyrhizobium japonicum USDA 6]
Length = 154
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + Q E V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKQHE-VRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|20150576|pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Free Variant Of E.
Coli Rnase Hi
Length = 155
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+ N G Y G + AG R TNN E+ A AL+ K
Sbjct: 5 VEIFTDGSALGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAAVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HA--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N +ADE+AR AA
Sbjct: 119 EWVKGHAGHPENERADELARAAA 141
>gi|83945317|ref|ZP_00957665.1| ribonuclease H [Oceanicaulis sp. HTCC2633]
gi|83851151|gb|EAP89008.1| ribonuclease H [Oceanicaulis alexandrii HTCC2633]
Length = 148
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+N +V+ TDGAC N G + G L+ A T TNN E+ AI AL+
Sbjct: 3 ENTIVIHTDGACSGNPGPGGWGAILHWKGHEKELSGAEAET---TNNRMELMAAIAALEA 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + R+ +DS ++ V +W+ W+ NGW+ A KPV+N ++L + L I
Sbjct: 60 LKRRSTVRLV--TDSTYVRDGVTKWIHGWKRNGWKTAAKKPVKN-DDLWKRLDAIASKHD 116
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
V WE+V GH N +AD++ARDA
Sbjct: 117 VTWEWVKGHAGHPENERADQLARDA 141
>gi|424033746|ref|ZP_17773157.1| ribonuclease HI [Vibrio cholerae HENC-01]
gi|424047423|ref|ZP_17784982.1| ribonuclease HI [Vibrio cholerae HENC-03]
gi|408873859|gb|EKM13042.1| ribonuclease HI [Vibrio cholerae HENC-01]
gi|408883916|gb|EKM22679.1| ribonuclease HI [Vibrio cholerae HENC-03]
Length = 154
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V
Sbjct: 61 EPC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETARHQ-VD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WHWVKGHAGHRENEICDELARAAA 141
>gi|401762403|ref|YP_006577410.1| ribonuclease H [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400173937|gb|AFP68786.1| ribonuclease H [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 155
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ E +KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|146310411|ref|YP_001175485.1| ribonuclease H [Enterobacter sp. 638]
gi|189043690|sp|A4W6V4.1|RNH_ENT38 RecName: Full=Ribonuclease H; Short=RNase H
gi|145317287|gb|ABP59434.1| RNase HI [Enterobacter sp. 638]
Length = 155
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G N +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFNEGYHLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V I +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L ++KW
Sbjct: 62 -DCD-VVISTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV-DLWKRLDAALSHHTIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|229488947|ref|ZP_04382813.1| ribonuclease HI [Rhodococcus erythropolis SK121]
gi|229324451|gb|EEN90206.1| ribonuclease HI [Rhodococcus erythropolis SK121]
Length = 193
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ A+
Sbjct: 12 IIVSTDGSCLRNP--GGAIGWA-WVNHEGPSMSGGEASG--TNQIAELRALFEAVVAHPG 66
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG-QMESVK 125
A D + I+SDSQ+ IKC EW+P W+ GW+ A G V+N E +Q + I ++ V+
Sbjct: 67 A--DPLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVR 124
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD++A +AA
Sbjct: 125 FRWVRGHVGNHYNEMADKLAGEAA 148
>gi|118602401|ref|YP_903616.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|187611403|sp|A1AW38.1|RNH_RUTMC RecName: Full=Ribonuclease H; Short=RNase H
gi|118567340|gb|ABL02145.1| ribonuclease H [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 146
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N ++++TDG C N +G G+GV+ + V TNN E+ I AL+
Sbjct: 2 NKIIIYTDGGCRGNPGIG---GWGVWLKYGDYDKKLQGVQQDTTNNQMELTATIKALEVI 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS +I + + +DS+++I + EW+ W++ GW+ A+ KPV+N +L + L + +V
Sbjct: 59 KSNDI-AIDLFTDSKYVITGISEWIKNWKAKGWKTANKKPVKN-IDLWQRLDVLNNQHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH GN AD +A A
Sbjct: 117 TWHWVKGHSGDKGNDMADALANLA 140
>gi|392977713|ref|YP_006476301.1| ribonuclease H [Enterobacter cloacae subsp. dissolvens SDM]
gi|392323646|gb|AFM58599.1| ribonuclease H [Enterobacter cloacae subsp. dissolvens SDM]
Length = 155
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ E +KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|453068896|ref|ZP_21972166.1| ribonuclease H [Rhodococcus qingshengii BKS 20-40]
gi|226187784|dbj|BAH35888.1| ribonuclease HI [Rhodococcus erythropolis PR4]
gi|452764530|gb|EME22797.1| ribonuclease H [Rhodococcus qingshengii BKS 20-40]
Length = 183
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ A+
Sbjct: 2 IIVSTDGSCLRNP--GGAIGWA-WVNHEGPSMSGGEASG--TNQIAELRALFEAVVAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG-QMESVK 125
A D + I+SDSQ+ IKC EW+P W+ GW+ A G V+N E +Q + I ++ V+
Sbjct: 57 A--DPLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD++A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADKLAGEAA 138
>gi|448538233|ref|XP_003871485.1| ribonuclease H1 [Candida orthopsilosis Co 90-125]
gi|380355842|emb|CCG25361.1| ribonuclease H1 [Candida orthopsilosis]
Length = 279
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 30/169 (17%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVA---------GKVTGRVTNNNAEIQGAI 58
++ DGA NG+ A +GYGVY+G + N A K T TN AE+ G
Sbjct: 108 IYVDGASRGNGQSKSAPSGYGVYYGPGDSRNAAVGLHEVDNINKYT--PTNQRAELHGMK 165
Query: 59 HALKQAK---------SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE 109
HAL K +++ R I SDS++ I+ + EW KWQSNGW+ + G+PV N +
Sbjct: 166 HALTNIKDDLANGNSSTSSSPRYDIYSDSKYAIQSINEWSDKWQSNGWKTSTGQPVANSD 225
Query: 110 ELQE---LLHQIGQM------ESVKWEFVPGHGNSHGNMKADEMARDAA 149
+++ L ++I Q+ + +++ V GH GN AD +A A
Sbjct: 226 LIKDAVQLKNEINQLYRERDWKPLEFHHVKGHSGDVGNEAADRLANQGA 274
>gi|365969122|ref|YP_004950683.1| ribonuclease H [Enterobacter cloacae EcWSU1]
gi|365748035|gb|AEW72262.1| Ribonuclease H [Enterobacter cloacae EcWSU1]
Length = 155
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYREHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ E +KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|269795771|ref|YP_003315226.1| RNase HI [Sanguibacter keddieii DSM 10542]
gi|269097956|gb|ACZ22392.1| RNase HI [Sanguibacter keddieii DSM 10542]
Length = 170
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAI 58
+ D+ V ++TDGAC N VG G+G + G L VT TNN E+ I
Sbjct: 22 EADSAVEIWTDGACKGNPGVG---GWGAWLRAGGHERELFGGETVT---TNNRMELTAVI 75
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K + V + DS +++ + +W+ W+ NGWR D KPV+N + Q L Q+
Sbjct: 76 EALRALKRPCV--VNLHVDSTYVMNGMSKWIAGWKRNGWRTGDKKPVKNVDLWQALDEQV 133
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
+ ++ W +V GH GN KADE+A
Sbjct: 134 AR-HTITWTWVKGHSGDVGNEKADELA 159
>gi|152968804|ref|YP_001333913.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|262044051|ref|ZP_06017131.1| ribonuclease H [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|330005756|ref|ZP_08305368.1| ribonuclease HI [Klebsiella sp. MS 92-3]
gi|365144800|ref|ZP_09348874.1| ribonuclease H [Klebsiella sp. 4_1_44FAA]
gi|378977115|ref|YP_005225256.1| RNase HI [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|386033285|ref|YP_005953198.1| ribonuclease H [Klebsiella pneumoniae KCTC 2242]
gi|402782291|ref|YP_006637837.1| ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419975994|ref|ZP_14491398.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419981715|ref|ZP_14496987.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419987302|ref|ZP_14502424.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419993102|ref|ZP_14508049.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419999096|ref|ZP_14513876.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420000905|ref|ZP_14515563.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420010736|ref|ZP_14525205.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420013467|ref|ZP_14527778.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420018551|ref|ZP_14532748.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420027765|ref|ZP_14541754.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420033748|ref|ZP_14547548.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420035500|ref|ZP_14549164.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420041835|ref|ZP_14555331.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420047898|ref|ZP_14561214.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420056587|ref|ZP_14569741.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420062115|ref|ZP_14575094.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420064727|ref|ZP_14577536.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420072458|ref|ZP_14585095.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420079142|ref|ZP_14591592.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420083020|ref|ZP_14595309.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421909406|ref|ZP_16339223.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421918166|ref|ZP_16347699.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424829085|ref|ZP_18253813.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425078254|ref|ZP_18481357.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425079988|ref|ZP_18483085.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425088887|ref|ZP_18491980.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425090107|ref|ZP_18493192.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428151685|ref|ZP_18999394.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428931278|ref|ZP_19004877.1| ribonuclease H [Klebsiella pneumoniae JHCK1]
gi|428938857|ref|ZP_19011977.1| ribonuclease H [Klebsiella pneumoniae VA360]
gi|449046973|ref|ZP_21730662.1| ribonuclease H [Klebsiella pneumoniae hvKP1]
gi|189043699|sp|A6T512.1|RNH_KLEP7 RecName: Full=Ribonuclease H; Short=RNase H
gi|150953653|gb|ABR75683.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|259038623|gb|EEW39814.1| ribonuclease H [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|328536124|gb|EGF62512.1| ribonuclease HI [Klebsiella sp. MS 92-3]
gi|339760413|gb|AEJ96633.1| ribonuclease H [Klebsiella pneumoniae KCTC 2242]
gi|363647826|gb|EHL87030.1| ribonuclease H [Klebsiella sp. 4_1_44FAA]
gi|364516526|gb|AEW59654.1| RNase HI [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|397341772|gb|EJJ34945.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397342288|gb|EJJ35451.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397345243|gb|EJJ38369.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397358898|gb|EJJ51607.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397359289|gb|EJJ51988.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397373120|gb|EJJ65592.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397377939|gb|EJJ70159.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397380416|gb|EJJ72601.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397390508|gb|EJJ82418.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397392902|gb|EJJ84678.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397394203|gb|EJJ85938.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397408236|gb|EJJ99612.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397416738|gb|EJK07911.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397418372|gb|EJK09531.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397420383|gb|EJK11460.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397429096|gb|EJK19820.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397433433|gb|EJK24083.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397438977|gb|EJK29442.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397444097|gb|EJK34388.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397451666|gb|EJK41747.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|402543153|gb|AFQ67302.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|405591233|gb|EKB64746.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405601979|gb|EKB75132.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405606913|gb|EKB79883.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405613791|gb|EKB86512.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|410116682|emb|CCM81848.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410119493|emb|CCM90324.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|414706502|emb|CCN28206.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|426304892|gb|EKV67025.1| ribonuclease H [Klebsiella pneumoniae VA360]
gi|426308305|gb|EKV70372.1| ribonuclease H [Klebsiella pneumoniae JHCK1]
gi|427538317|emb|CCM95532.1| Ribonuclease HI [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448877582|gb|EMB12544.1| ribonuclease H [Klebsiella pneumoniae hvKP1]
Length = 155
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L +GQ +KW
Sbjct: 62 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQ-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|407926685|gb|EKG19649.1| hypothetical protein MPH_03081 [Macrophomina phaseolina MS6]
Length = 369
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKSA 67
+ TDG+ NGK G+ AG GV+FG + NV+ + G R TN AE+ AL A
Sbjct: 216 ICTDGSALGNGKKGSVAGVGVFFGPLDKRNVSEGLAGARQTNQRAELTAIQRALDIAP-- 273
Query: 68 NIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK- 125
+ R V I++DS + I CV W W+ N W+ + KPV+NK+ ++ ++ +I + E +
Sbjct: 274 -LQRDVEIRTDSSYGINCVTVWYKSWRKNNWQTSGKKPVENKDLVEPIVARIEEREKIGT 332
Query: 126 ---WEFVPGHGNSHGNMKADEMA 145
+ ++ GH + GN+ AD +A
Sbjct: 333 KTIFTWLKGHADDPGNIAADALA 355
>gi|341899021|gb|EGT54956.1| hypothetical protein CAEBREN_14689 [Caenorhabditis brenneri]
Length = 175
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK--VTGRVTNNNAEIQGAIHALKQA-K 65
++TDG RNG+ GA G+ + F +NN T TNN E+ I AL+ A +
Sbjct: 15 IYTDGCALRNGQPGAKGGWAIVFEDNNEFENDSDWCTTCPQTNNCFELMAVIEALRNALR 74
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME--- 122
+ V I +DS+++I + EW+ KW+SN W GKPV N+E ++ + M
Sbjct: 75 RGGVYHVIIVTDSKYVISALTEWIHKWKSNNWLNCKGKPVMNRELIETIDSMTQNMIRRG 134
Query: 123 -SVKWEFVPGH-GNSHGNM 139
SVK+E V GH GN +M
Sbjct: 135 GSVKYEHVNGHSGNRWNDM 153
>gi|302503384|ref|XP_003013652.1| ribonuclease H1, putative [Arthroderma benhamiae CBS 112371]
gi|291177217|gb|EFE33012.1| ribonuclease H1, putative [Arthroderma benhamiae CBS 112371]
Length = 262
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 18/137 (13%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY------FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+V+ DGAC NG+ A GV+ F E+ PLN+ +N AEI IH
Sbjct: 26 LVISVDGACRGNGREHRDASAGVFVDQGSRFNESIPLNLDNP-----SNQKAEILAGIHG 80
Query: 61 LKQAKSAN---IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L +A+ + V I+SDS++M+K V EW +W+SNG+R A+G+PV N+E Q+L
Sbjct: 81 LNKAREMDGGPSRHVTIRSDSEYMVKGVNEWSRRWESNGYRAANGQPVVNRELFQQLNSA 140
Query: 118 IGQME----SVKWEFVP 130
+E V ++ VP
Sbjct: 141 RDSLERSGIKVDFQHVP 157
>gi|149377451|ref|ZP_01895194.1| ribonuclease H [Marinobacter algicola DG893]
gi|149358292|gb|EDM46771.1| ribonuclease H [Marinobacter algicola DG893]
Length = 148
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 16/144 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++TDGAC N G G+GV +G+ N + G+ TNN E+ AI LK
Sbjct: 5 VVLYTDGACKGNPGPG---GWGVVLRYGDANKMLHGGEAN--TTNNRMELMAAIQGLKA- 58
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ R C + +DSQ++ K + EWM W+ NGW+ + KPV+N++ +EL +++ +
Sbjct: 59 ----LRRTCDVELYTDSQYVRKGITEWMTGWKRNGWKTSAKKPVKNEDLWRELDNEVAR- 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH + N ADE+A
Sbjct: 114 HKVNWHWVKGHSGNPDNELADELA 137
>gi|393776722|ref|ZP_10365016.1| RnhA protein [Ralstonia sp. PBA]
gi|392716079|gb|EIZ03659.1| RnhA protein [Ralstonia sp. PBA]
Length = 147
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +++DGAC N G G+G V ++ + G G TNN E+ I AL+ K
Sbjct: 4 VTIYSDGACKGNPGPG---GWGAVLVSGDHEKEMFGGEAG-TTNNRMELTAVIEALRALK 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
R+ + +DSQ++ K ++EW+P W++ GW+ AD KPV+N +L + L + + ++
Sbjct: 60 RPC--RIAVYTDSQYVQKGIKEWLPGWKARGWKTADKKPVKN-ADLWQTLDDLTRPHQIE 116
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 117 WHWVRGHNGHPGNERADALA 136
>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|416158113|ref|ZP_11605552.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
gi|416217726|ref|ZP_11624459.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|416225073|ref|ZP_11626813.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
gi|416230940|ref|ZP_11628598.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
gi|416235518|ref|ZP_11630194.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
gi|416240473|ref|ZP_11632444.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|416242545|ref|ZP_11633581.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|416246634|ref|ZP_11635092.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|416249509|ref|ZP_11636606.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|416254841|ref|ZP_11638943.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|421779925|ref|ZP_16216415.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BBH18]
gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|407812719|gb|EKF83503.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
Length = 432
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 8 VVFTDGACPRNGKVGASAG-YGVYF----GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+ +TDGAC NGK G SAG +GVY G+ L T TNN E+ AI AL
Sbjct: 6 IAYTDGACKGNGKQGVSAGGWGVYLHYFNGDERHLWGGEPDT---TNNRMELMAAITAL- 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+A A I + + +DS ++ + +W+ W+ GW+KADGKPV N ++L + L Q+ Q
Sbjct: 62 EATPAQI-PLQLWTDSGYVKDGITQWIGGWKLRGWKKADGKPVLN-QDLWQRLDQLTQNR 119
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
+ W+++ GH GN AD++A
Sbjct: 120 IIDWQWIKGHAGHAGNEMADQLA 142
>gi|238893207|ref|YP_002917941.1| ribonuclease H [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|424934956|ref|ZP_18353328.1| Ribonuclease H (RNase H) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|238545523|dbj|BAH61874.1| RNase HI [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|407809143|gb|EKF80394.1| Ribonuclease H (RNase H) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
Length = 192
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 42 VEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLT---TNNRMELMAAIVALEALKE 98
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L +GQ +KW
Sbjct: 99 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQ-HKIKW 155
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AA
Sbjct: 156 EWVKGHAGHPENERCDELARAAAS 179
>gi|311103920|ref|YP_003976773.1| RNAse H [Achromobacter xylosoxidans A8]
gi|310758609|gb|ADP14058.1| RNAse H [Achromobacter xylosoxidans A8]
Length = 153
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ V ++TDGAC N G G+GV G L+ G++ + TNN E+ I
Sbjct: 8 EQKVEMWTDGACKGNPGPG---GWGVLMRAGGHEKTLH-GGEL--QTTNNRMELLAVIQG 61
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K RV I +DSQ+++K + EW+ W+ GW AD KPV+N EL +LL + Q
Sbjct: 62 LRALKRPC--RVIIHTDSQYVMKGMTEWLANWKRRGWMTADKKPVKNV-ELWQLLDEQVQ 118
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+V W +V GH GN +AD++A
Sbjct: 119 RHTVSWRWVRGHAGDPGNERADQLA 143
>gi|290509929|ref|ZP_06549299.1| ribonuclease HI [Klebsiella sp. 1_1_55]
gi|289776645|gb|EFD84643.1| ribonuclease HI [Klebsiella sp. 1_1_55]
Length = 192
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 42 VEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLT---TNNRMELMAAIVALEALKE 98
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L +GQ +KW
Sbjct: 99 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQ-HKIKW 155
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AA
Sbjct: 156 EWVKGHAGHPENERCDELARAAAS 179
>gi|285017396|ref|YP_003375107.1| ribonuclease H [Xanthomonas albilineans GPE PC73]
gi|283472614|emb|CBA15119.1| probable ribonuclease h (rnase h) protein [Xanthomonas albilineans
GPE PC73]
Length = 152
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G A Y ++ VAG TNN E+ AI AL+ +
Sbjct: 4 VDIHTDGACLGNPGPGGWAALLRY--KDQEREVAG-AEAHTTNNRMELMAAIMALETLNA 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ +L E LH Q ++ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRQWKTAGGDPVKNR-DLWERLHAAAQRHAIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D++ARD A
Sbjct: 118 RWVKGHNGDPDNERVDQLARDQA 140
>gi|339326488|ref|YP_004686181.1| ribonuclease H [Cupriavidus necator N-1]
gi|338166645|gb|AEI77700.1| ribonuclease H [Cupriavidus necator N-1]
Length = 145
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYG-----VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
V +++DGAC P G GA G ++ GE N TNN E+ I
Sbjct: 4 VTIYSDGACKGNPGRGGWGAVLIAGTSEKELFGGEPN-----------TTNNRMEMTAVI 52
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K + RV +DSQ++ K + EW+P W++ GW+ AD KPV+N + QE L +
Sbjct: 53 EALRALKRPCVVRVY--TDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQE-LDTL 109
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
Q + W +V GH GN +AD +A
Sbjct: 110 AQPHQISWHWVRGHNGHPGNERADALA 136
>gi|206576707|ref|YP_002240303.1| ribonuclease H [Klebsiella pneumoniae 342]
gi|288937008|ref|YP_003441067.1| ribonuclease H [Klebsiella variicola At-22]
gi|238056789|sp|B5Y1G2.1|RNH_KLEP3 RecName: Full=Ribonuclease H; Short=RNase H
gi|206565765|gb|ACI07541.1| ribonuclease H [Klebsiella pneumoniae 342]
gi|288891717|gb|ADC60035.1| Ribonuclease H [Klebsiella variicola At-22]
Length = 155
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L +GQ +KW
Sbjct: 62 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQ-HKIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|56966979|pdb|1WSI|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966980|pdb|1WSI|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966981|pdb|1WSI|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|56966982|pdb|1WSI|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
gi|61680237|pdb|1WSG|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680238|pdb|1WSG|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680239|pdb|1WSG|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
gi|61680240|pdb|1WSG|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
Length = 155
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN + AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMALMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W++ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + +E+AR AA
Sbjct: 119 EWVKGHAGHPENERCNELARAAA 141
>gi|389722526|ref|ZP_10189155.1| ribonuclease H [Rhodanobacter sp. 115]
gi|388441559|gb|EIL97824.1| ribonuclease H [Rhodanobacter sp. 115]
Length = 151
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V FTDGAC N G G+ V TNN E+ AI AL+
Sbjct: 4 VEAFTDGACLGNPGPG---GWAALLRAGGKERVVAGGEPDTTNNRMELLAAISALEALTR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DS+++++ +++W+PKW++NGWR A +PV+N++ + L H G+ + V+W
Sbjct: 61 PC--QVVLTTDSRYVMQGIEQWVPKWRANGWRTAGRQPVKNQDLWERLSHATGKHQ-VRW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH N + D+ AR+ A
Sbjct: 118 QWVRGHNGHAENERVDQAAREQA 140
>gi|407793692|ref|ZP_11140724.1| ribonuclease H [Idiomarina xiamenensis 10-D-4]
gi|407214391|gb|EKE84239.1| ribonuclease H [Idiomarina xiamenensis 10-D-4]
Length = 156
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 1 MDPDNHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M V +FTDG+C P G GA YG + E L ++T TNN E+ A
Sbjct: 1 MRQQKQVNIFTDGSCLGNPGPGGYGAIIEYGKHRKE---LQQGYQLT---TNNRMEMLAA 54
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
+ AL+ +V + SDSQ++ + + +W+ W+ NGWR AD K V+N +L + L Q
Sbjct: 55 VRALETLTQPC--QVELYSDSQYLRQGITQWIHNWKRNGWRTADKKTVKNA-DLWQALDQ 111
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
Q + W +V GH N + DE+AR AAG
Sbjct: 112 QCQRHQIAWHWVKGHAGHPQNERCDELARTAAG 144
>gi|445065049|ref|ZP_21376951.1| ribonuclease H [Brachyspira hampsonii 30599]
gi|444503565|gb|ELV04425.1| ribonuclease H [Brachyspira hampsonii 30599]
Length = 163
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++++TDG C N +GA A + N L + G+ TNN E++ AI AL++ K
Sbjct: 6 IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKALERLKH 64
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + + SDS +++ + +W+ WQ N W K+D KPV+NKE +L+ ++ ++++
Sbjct: 65 SH--NIKLHSDSAYLVNGMTKWIYSWQKNNWIKSDKKPVENKEYWLKLI-ELSSKHNIEF 121
Query: 127 EFVPGHGNSHGNMKADEMA 145
V GH N+ N +ADE+
Sbjct: 122 IKVKGHSNNKENNRADEIV 140
>gi|422911073|ref|ZP_16945701.1| ribonuclease HI [Vibrio cholerae HE-09]
gi|424660737|ref|ZP_18097984.1| ribonuclease HI [Vibrio cholerae HE-16]
gi|341632445|gb|EGS57311.1| ribonuclease HI [Vibrio cholerae HE-09]
gi|408050110|gb|EKG85283.1| ribonuclease HI [Vibrio cholerae HE-16]
Length = 156
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKQRGWKTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|336248852|ref|YP_004592562.1| ribonuclease H [Enterobacter aerogenes KCTC 2190]
gi|444353005|ref|YP_007389149.1| Ribonuclease HI (EC 3.1.26.4) [Enterobacter aerogenes EA1509E]
gi|334734908|gb|AEG97283.1| ribonuclease H [Enterobacter aerogenes KCTC 2190]
gi|443903835|emb|CCG31609.1| Ribonuclease HI (EC 3.1.26.4) [Enterobacter aerogenes EA1509E]
Length = 155
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAIMRYRQHEKTYSAGYRLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|304320024|ref|YP_003853667.1| ribonuclease H [Parvularcula bermudensis HTCC2503]
gi|303298927|gb|ADM08526.1| ribonuclease H [Parvularcula bermudensis HTCC2503]
Length = 140
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ ++TDGAC N G G+GV +GE+ G+ TNN E+ AI AL+
Sbjct: 2 IEIYTDGACSGNPGPG---GWGVLIEWGEDTSRLNGGEPN--TTNNRMELTAAIKALESV 56
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ +DSQ++ V+ W+ W+ NGWR A+ KPV+N ++L + L ++ Q +V
Sbjct: 57 DPKTP--FTLYTDSQYVKNGVETWIHGWKRNGWRTANKKPVKN-QDLWQTLDRLAQERAV 113
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
W++V GH GN +AD +AR+
Sbjct: 114 TWKWVKGHAGHPGNEEADRLARE 136
>gi|333908477|ref|YP_004482063.1| ribonuclease H [Marinomonas posidonica IVIA-Po-181]
gi|333478483|gb|AEF55144.1| Ribonuclease H [Marinomonas posidonica IVIA-Po-181]
Length = 146
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
VV++TDGAC N +G + + G L + T TNN E+ GAI LK K
Sbjct: 3 EVVIYTDGACKGNPGIGGWGAWLTFGGHEKRLCGGERDT---TNNRMELMGAIEGLKALK 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
A V + +DS ++ K + +W+ W+ GW A +PV+NK +L + L Q V
Sbjct: 60 EAC--DVTLYTDSSYVQKGITQWLAGWKKKGWMTASKQPVKNK-DLWQALDDACQKHQVT 116
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W++V GH GN AD++A
Sbjct: 117 WKWVKGHAGIEGNEIADQLA 136
>gi|339998272|ref|YP_004729155.1| ribonuclease H [Salmonella bongori NCTC 12419]
gi|339511633|emb|CCC29342.1| ribonuclease H [Salmonella bongori NCTC 12419]
Length = 155
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|220925641|ref|YP_002500943.1| ribonuclease H [Methylobacterium nodulans ORS 2060]
gi|219950248|gb|ACL60640.1| ribonuclease H [Methylobacterium nodulans ORS 2060]
Length = 223
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGV-YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ- 63
+V+ DG C N G G+GV P+ ++G R TNN E+ AI AL+
Sbjct: 2 RTIVYADGGCDPNPGPG---GWGVVILAPEGPIELSGG-DPRSTNNRMELTAAIRALEHF 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ A I+ C DSQ+++K V EWM W++ GWR G+ V+N+ +L E L +
Sbjct: 58 PEGAAIEMRC---DSQYVVKSVTEWMRGWKAKGWRTTTGE-VKNR-DLMERLDALAARRD 112
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN +AD +A
Sbjct: 113 VRWVWVRGHAGEEGNERADRLA 134
>gi|75676871|ref|YP_319292.1| ribonuclease H [Nitrobacter winogradskyi Nb-255]
gi|123731975|sp|Q3SP51.1|RNH_NITWN RecName: Full=Ribonuclease H; Short=RNase H
gi|74421741|gb|ABA05940.1| RNase HI [Nitrobacter winogradskyi Nb-255]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGDIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ + + W+ W+ NGWR AD KPV+N + Q L + Q
Sbjct: 63 LKRPAL--VDLTTDSQYVRQGITAWIHGWKRNGWRTADRKPVKNVDLWQRLDAAL-QPHQ 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++AR+
Sbjct: 120 VRWHWIKGHDGHSENERADQLARE 143
>gi|238921063|ref|YP_002934578.1| ribonuclease HI, putative [Edwardsiella ictaluri 93-146]
gi|259494079|sp|C5BEV5.1|RNH_EDWI9 RecName: Full=Ribonuclease H; Short=RNase H
gi|238870632|gb|ACR70343.1| ribonuclease HI, putative [Edwardsiella ictaluri 93-146]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYRLT---TNNRMELMAAIVALETLT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
SA +V + SDSQ++ + + +W+ W+ W+ AD KPV+N + Q L IG + V+
Sbjct: 61 SAC--QVALFSDSQYVRQGITQWIHGWKRRDWKTADKKPVKNVDLWQRLDQAIGPHQ-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W ++ GH N + DE+AR AAG
Sbjct: 118 WIWIKGHAGHPENERCDELARRAAG 142
>gi|111019266|ref|YP_702238.1| ribonuclease H [Rhodococcus jostii RHA1]
gi|110818796|gb|ABG94080.1| probable ribonuclease H [Rhodococcus jostii RHA1]
Length = 177
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 E--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLTLVQSIDRAISERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|384208646|ref|YP_005594366.1| ribonuclease H [Brachyspira intermedia PWS/A]
gi|343386296|gb|AEM21786.1| ribonuclease H [Brachyspira intermedia PWS/A]
Length = 163
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISERHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L++ K ++ + + SDS +++ + +W+ WQ N W K+D KPV+NKE +L+ ++ +
Sbjct: 59 LERLKHSH--NIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLKLI-ELSK 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++++ V GH + N +ADE+
Sbjct: 116 KHNIEFIKVKGHSTNKENNRADEIV 140
>gi|406695984|gb|EKC99281.1| ribonuclease H [Trichosporon asahii var. asahii CBS 8904]
Length = 330
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 6 HVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHAL 61
H+VV+TDG+ G + + + G +NVA +V G + TNN E+ I AL
Sbjct: 131 HLVVYTDGSSLANGTKGAAAGAGVFFGHAGRARNMNVAERVGGSMQTNNRGELLSIIIAL 190
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ + + I++DSQ+ I+C+ +W P W + GW+ A G+ V+N + ++ LLH +
Sbjct: 191 ENDPYPELP-IEIRTDSQYSIQCITKWAPSWIARGWKTASGQAVKNVDMIRYLLHLVSSR 249
Query: 122 ES-VKWEFVPGHGNSHGNMKADEMARDAAG 150
++ V+ +V GH GN AD +AR A
Sbjct: 250 KAPVRLSYVRGHIGEAGNEAADHLARSGAA 279
>gi|255725982|ref|XP_002547917.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133841|gb|EER33396.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 283
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 8 VVFTDGACPRNG-KVGASAGYGVYFGENNPLNVAGKVT-------GRVTNNNAEI----Q 55
VV+ DGAC NG K +SAGYGV++G NNP NVA + R TN AE+ Q
Sbjct: 113 VVYIDGACRGNGNKYNSSAGYGVFYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYALCQ 172
Query: 56 GAIHALKQAKSANID-RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE- 113
++ + + N + I++DS F+I + W KW +NGW A G V N + LQ+
Sbjct: 173 VLVNIVNDINAGNCRLKTEIRTDSMFVINSITTWCYKWCNNGWINAKGDTVANVDLLQKN 232
Query: 114 --LLHQIG-QMESVKW---EF--VPGHGNSHGNMKADEMA 145
L+ I + E W EF V GH +GN +AD +A
Sbjct: 233 FNLMKSINKEYEDRGWGDIEFIHVRGHSGDYGNDEADRLA 272
>gi|149927490|ref|ZP_01915744.1| ribonuclease H [Limnobacter sp. MED105]
gi|149823763|gb|EDM82989.1| ribonuclease H [Limnobacter sp. MED105]
Length = 141
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 9 VFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++ DGAC N G G+GV+ G++ G++ TNN E+ I L K
Sbjct: 1 MYADGACKGNPGPG---GWGVFLQSGDHAKELCGGELN--TTNNRMELTAVIEGLNALKK 55
Query: 67 -ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ID + +DSQ++ K V EWMPKW+ NGW+ +D KPV+N +L ++L + V+
Sbjct: 56 RCSID---VYTDSQYVRKGVLEWMPKWKMNGWKTSDKKPVKN-ADLWQILDEASVRHLVR 111
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH + GN KAD +A
Sbjct: 112 WHWVKGHSGNPGNEKADALA 131
>gi|113868434|ref|YP_726923.1| ribonuclease H [Ralstonia eutropha H16]
gi|123133822|sp|Q0K8W6.1|RNH_RALEH RecName: Full=Ribonuclease H; Short=RNase H
gi|113527210|emb|CAJ93555.1| Ribonuclease HI [Ralstonia eutropha H16]
Length = 145
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYG-----VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
V +++DGAC P G GA G ++ GE N TNN E+ I
Sbjct: 4 VTIYSDGACKGNPGRGGWGAVLVAGASEKEMFGGEPN-----------TTNNRMEMTAVI 52
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K + RV +DSQ++ K + EW+P W++ GW+ AD KPV+N + QE L +
Sbjct: 53 EALRALKRPCVVRVY--TDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQE-LDTL 109
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
Q + W +V GH GN +AD +A
Sbjct: 110 AQPHQISWHWVRGHNGHPGNERADALA 136
>gi|71736245|ref|YP_273949.1| ribonuclease H [Pseudomonas syringae pv. phaseolicola 1448A]
gi|123747674|sp|Q48KX6.1|RNH_PSE14 RecName: Full=Ribonuclease H; Short=RNase H
gi|71556798|gb|AAZ36009.1| ribonuclease HI [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 149
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V+ G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVFKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|419961575|ref|ZP_14477582.1| ribonuclease H [Rhodococcus opacus M213]
gi|414573085|gb|EKT83771.1| ribonuclease H [Rhodococcus opacus M213]
Length = 175
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 E--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAISERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|330934491|ref|XP_003304570.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
gi|311318749|gb|EFQ87344.1| hypothetical protein PTT_17208 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
+N +VVF DGAC NG A A YGVYFG +P N G V + T+ AEI+ AL
Sbjct: 56 ENSMVVFIDGACRNNGSPTARASYGVYFGPESPYNRYGLVPDSLPQTSTRAEIEALSQAL 115
Query: 62 KQAKSAN-----IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
+ ++ + R+ I +DS F++K + +W+ W NG ++G+ V + + L++L
Sbjct: 116 EVIRAITDRDFELSRIKIATDSSFLVKAMSQWIETWIENGGIGSEGRRVAHFQILKQLHE 175
Query: 117 QIGQME 122
+ ME
Sbjct: 176 MLDYME 181
>gi|384086174|ref|ZP_09997349.1| ribonuclease HI [Acidithiobacillus thiooxidans ATCC 19377]
Length = 158
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V +FTDG C N +GA +G + V TNN E+ A+ L+
Sbjct: 3 DKIVELFTDGGCRGNPGIGA---WGAWLRRETQEKVLWGFEPETTNNRMELTAALRGLEA 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + SDS+++ + +W+P WQ GWR A G PV+N +++ ELL +
Sbjct: 60 LKRPT--RVRVISDSRYLRDGMTQWLPGWQRRGWRTAGGDPVKN-QDIWELLVKASAPHE 116
Query: 124 VKWEFVPGHGNSHGNMKADEM 144
V+WE+V GH N K D +
Sbjct: 117 VEWEWVRGHSGHVENEKVDAL 137
>gi|134081206|emb|CAK41715.1| unnamed protein product [Aspergillus niger]
Length = 278
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHALKQA 64
+V+ DGAC NG+ GA A GVY G ++PLN + + + T+ AE+ AL
Sbjct: 131 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACERALLGD 190
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES- 123
+ V IKSDS+++++ + EW+ KW++N W A G PV N+E +++ + +E+
Sbjct: 191 GEERLHTVVIKSDSEYVVRGMTEWIFKWKANDWTTAKGLPVANQEHFKKIDSLVESLENE 250
Query: 124 -VKWEF--VPGHGNSHGNMKADEMARDA 148
V +F VP N +AD +A A
Sbjct: 251 QVPVQFWQVP----REFNQEADRLAASA 274
>gi|21230448|ref|NP_636365.1| ribonuclease H [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769558|ref|YP_244320.1| ribonuclease H [Xanthomonas campestris pv. campestris str. 8004]
gi|188992766|ref|YP_001904776.1| ribonuclease H [Xanthomonas campestris pv. campestris str. B100]
gi|25009127|sp|Q8PBX8.1|RNH_XANCP RecName: Full=Ribonuclease H; Short=RNase H
gi|81304487|sp|Q4URM3.1|RNH_XANC8 RecName: Full=Ribonuclease H; Short=RNase H
gi|21112011|gb|AAM40289.1| ribonuclease H [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574890|gb|AAY50300.1| ribonuclease H [Xanthomonas campestris pv. campestris str. 8004]
gi|167734526|emb|CAP52736.1| ribonuclease H [Xanthomonas campestris pv. campestris]
Length = 150
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L G+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKEL-AGGEANS--TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W GW+ + G PV+N+ EL E LH Q S++W
Sbjct: 61 PC--QILLHTDSQYVRQGITEWMPGWVRRGWKTSGGDPVKNR-ELWERLHAATQRHSIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|20150465|pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FT G+ N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTAGSALGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HA--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N +ADE+AR AA
Sbjct: 119 EWVKGHAGHPENERADELARAAA 141
>gi|261253703|ref|ZP_05946276.1| ribonuclease HI [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417954504|ref|ZP_12597538.1| ribonuclease H [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937094|gb|EEX93083.1| ribonuclease HI [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342815224|gb|EGU50148.1| ribonuclease H [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 154
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ I AL QA
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKQTEKTLAKGYTMTTNNRMEMLATIVAL-QAL 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L Q + +V
Sbjct: 60 KESCD-VILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNA-DLWKALDQETERHTVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARGAA 141
>gi|341888714|gb|EGT44649.1| hypothetical protein CAEBREN_22993 [Caenorhabditis brenneri]
Length = 356
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VFTDG+C GK A AG+GV++G+++P N +GKV G NN AE+ A HA++QA
Sbjct: 35 TVFTDGSCRNQGKSNAKAGFGVFWGDDHPNNHSGKVDGLQDNNRAELFAACHAIRQALRL 94
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME---SV 124
++ I SDS+F+ +Q+ P+ N D +L+ I M V
Sbjct: 95 GYRKIRILSDSEFVRLVIQK--PQDFENKMAYID---------YHDLIQSINLMRRSIEV 143
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
E+V H +GN+KAD +A+
Sbjct: 144 SVEYVKAHSGHYGNVKADGLAK 165
>gi|328950436|ref|YP_004367771.1| ribonuclease H [Marinithermus hydrothermalis DSM 14884]
gi|328450760|gb|AEB11661.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
Length = 150
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 8/141 (5%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+V V+TDG+ R G+ G A Y G L+ T TNN E++ A+ AL+ K
Sbjct: 5 YVEVYTDGSADRFGR-GGWAALLRYEGREKLLSGGEAAT---TNNRMELRAALEALRALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ V + +DSQ++ K E W+ +WQ NGWR G PV+N++ + LL +I + E V
Sbjct: 61 RPCV--VVVYTDSQYLQKAFAEGWLERWQRNGWRTRAGAPVKNQDLWRALLEEIRRHE-V 117
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH N + D A
Sbjct: 118 RWRWVEGHAGHPENERVDREA 138
>gi|430761986|ref|YP_007217843.1| Ribonuclease HI [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011610|gb|AGA34362.1| Ribonuclease HI [Thioalkalivibrio nitratireducens DSM 14787]
Length = 155
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V VFTDGAC N G Y G+ L A T TNN E+ AI AL+
Sbjct: 8 VYVFTDGACRGNPGPGGWGAVLRYRGQERELRGAEPET---TNNRMEMTAAIEALETLTR 64
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ + + W+P W+ GWR A GKPV+N ++L L + + W
Sbjct: 65 TC--RVELLTDSQYLKQGITTWLPGWKRRGWRAASGKPVKN-QDLWLRLDALAARHEIDW 121
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH N +AD++A A
Sbjct: 122 FWVRGHTGHPENERADQLANQA 143
>gi|418940536|ref|ZP_13493898.1| Ribonuclease H [Rhizobium sp. PDO1-076]
gi|375052752|gb|EHS49157.1| Ribonuclease H [Rhizobium sp. PDO1-076]
Length = 155
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV ++TDGAC N G G+G + +GE G+ TNN E+ AI AL
Sbjct: 3 HVEIYTDGACSGNPGPG---GWGAVLRYGEVEKELFGGEAD--TTNNRMELLAAISALNA 57
Query: 64 AKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K+ ID + +DS++++ + +W+ W+ NGW+ AD KPV+N E Q+ L Q
Sbjct: 58 LKTPCEID---LHTDSKYVMDGISKWIFGWKKNGWKTADKKPVKNGELWQQ-LDAANQAH 113
Query: 123 SVKWEFVPGHGNSHGNMKADEMAR 146
VKW +V GH N +ADE+AR
Sbjct: 114 KVKWHWVKGHAGHPENERADELAR 137
>gi|397731664|ref|ZP_10498411.1| ribonuclease H [Rhodococcus sp. JVH1]
gi|396932472|gb|EJI99634.1| ribonuclease H [Rhodococcus sp. JVH1]
Length = 202
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 25 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 79
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 80 E--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLTLVQSIDRAISERPGPVR 137
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 138 FRWVRGHVGNHYNEMADVLAGEAA 161
>gi|157831219|pdb|1GOA|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 7/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
V + +DSQ++ + + Q W+ W+ GW+ AD KPV+N + Q L +GQ + +
Sbjct: 61 EHC--EVILSTDSQYVRQGITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-I 117
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
KWE+V GH N + DE+AR AA
Sbjct: 118 KWEWVKGHAGHPENERCDELARAAA 142
>gi|194290094|ref|YP_002006001.1| ribonuclease h [Cupriavidus taiwanensis LMG 19424]
gi|193223929|emb|CAQ69938.1| Ribonuclease H (RNase H) [Cupriavidus taiwanensis LMG 19424]
Length = 145
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYG-----VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
V +++DGAC P G GA G ++ GE N TNN E+ I
Sbjct: 4 VTIYSDGACKGNPGRGGWGAVLVAGTSEKELFGGEPN-----------TTNNRMEMTAVI 52
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K + RV +DSQ++ K + EW+P W++ GW+ AD KPV+N +L + L +
Sbjct: 53 EALRALKRPCVVRVY--TDSQYVQKGISEWLPGWKARGWKTADKKPVKNA-DLWQALDTL 109
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
Q + W +V GH GN +AD +A
Sbjct: 110 AQAHQISWHWVRGHNGHPGNERADALA 136
>gi|432349857|ref|ZP_19593289.1| ribonuclease H [Rhodococcus wratislaviensis IFP 2016]
gi|430770819|gb|ELB86742.1| ribonuclease H [Rhodococcus wratislaviensis IFP 2016]
Length = 175
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
D + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 E--DPLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAISERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|407278777|ref|ZP_11107247.1| ribonuclease H [Rhodococcus sp. P14]
Length = 195
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + ALK
Sbjct: 2 IIVSTDGSCLRNP--GGAIGWA-WVNHEGPSRAGGERSG--TNQIAELRALLEALKAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
+ + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N + +Q + + + V+
Sbjct: 57 P--EPMIIESDSQYAIKCASEWLPGWKRKGWKTATGAPVKNLDLVQAIDRVLAERSGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMA 145
+ +V GH +H N AD++A
Sbjct: 115 FRWVRGHVGNHFNELADKLA 134
>gi|387886903|ref|YP_006317202.1| ribonuclease H [Francisella noatunensis subsp. orientalis str. Toba
04]
gi|386871719|gb|AFJ43726.1| ribonuclease H [Francisella noatunensis subsp. orientalis str. Toba
04]
Length = 152
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G Y G + + A K T TNN E+ AI L QA
Sbjct: 8 NNVIAYTDGACKGNPGMGGWGAILSYNGVDKEIYGAEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + +W+ W++N W+ A K V+NK QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINQWLANWKANDWKTAAKKEVKNKYLWQE-LDSLTVKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWSWVKGHSGNQGNEKADELANKA 145
>gi|225619653|ref|YP_002720910.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
gi|225214472|gb|ACN83206.1| ribonuclease H [Brachyspira hyodysenteriae WA1]
Length = 163
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA A + N L + G+ TNN E++ AI A
Sbjct: 1 MTKDN-IIIYTDGGCRGNPGLGAWAAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L++ K ++ + + SDS +++ + +W+ WQ N W K+D KPV+NKE L+ ++ +
Sbjct: 59 LERLKHSH--SIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLRLI-ELSK 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+++ V GH + N +ADE+
Sbjct: 116 KHDIEFIKVKGHSTNKENNRADEIV 140
>gi|258546178|ref|ZP_05706412.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
gi|258518603|gb|EEV87462.1| ribonuclease HI [Cardiobacterium hominis ATCC 15826]
Length = 148
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++++TDGAC N +G G+GV +GE+ LN A +T TNN E+ AI AL+
Sbjct: 5 LLIYTDGACKGNPGIG---GWGVLMCYGEHRKTLNGAEAMT---TNNRMELTAAIEALRA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K A + + +DS ++ + +W+ W+ NGW+ AD K V+N + Q L + Q +
Sbjct: 59 VKRAC--PIVLTTDSSYVKNGITQWLAGWKRNGWKTADKKAVKNVDLWQALDALVAQHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
++W+++ GH GN AD++A +A
Sbjct: 116 IEWQWIKGHSGHPGNEMADQLANEA 140
>gi|192361631|ref|YP_001982514.1| RNase H [Cellvibrio japonicus Ueda107]
gi|190687796|gb|ACE85474.1| RNase H [Cellvibrio japonicus Ueda107]
Length = 144
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYG-----VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
V +FTDGAC P G GA YG +Y GE TNN E+ AI
Sbjct: 4 VEIFTDGACKGNPGPGGWGALLRYGQVEKSLYGGEPE-----------TTNNRMELMAAI 52
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL K V I +DSQ++ K + EWMP W+ NGWR A +PV+N + Q L Q
Sbjct: 53 AALSALKEPCA--VVITTDSQYVRKGITEWMPGWKRNGWRTAAKEPVKNADLWQRLDEQ- 109
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
Q V W++V GH N AD +A
Sbjct: 110 NQRHQVTWKWVKGHSGHRENELADALA 136
>gi|389696924|ref|ZP_10184566.1| ribonuclease HI [Microvirga sp. WSM3557]
gi|388585730|gb|EIM26025.1| ribonuclease HI [Microvirga sp. WSM3557]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + ++TDGAC N G ++ G ++ T TNN EI+ AI
Sbjct: 1 MSAPERITIYTDGACSGNPGPGGWGAILLFKGSEKEISGGEAYT---TNNRMEIRAAIEG 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K V + +DSQ++ + + +WM W+ GWR AD KPV+N E+L L +
Sbjct: 58 LNALKRPCA--VDLFTDSQYVRQGITQWMHNWKRRGWRTADNKPVKN-EDLWRALDEAAS 114
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH + N++ DE+A
Sbjct: 115 RHDVAWHWVKGHADDPTNIRVDELA 139
>gi|333982312|ref|YP_004511522.1| Ribonuclease H [Methylomonas methanica MC09]
gi|333806353|gb|AEF99022.1| Ribonuclease H [Methylomonas methanica MC09]
Length = 148
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDGAC N G Y Y G+ L + T TNN E+ AI AL+
Sbjct: 5 VTVYTDGACKGNPGPGGWGVYMSYKGKEKQLCGGERET---TNNRMELMAAIQALEI--- 58
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
++R C + +DS+++++ + EWM W+ GW+ + KPV+N E+L L Q Q S
Sbjct: 59 --LNRSCAIKLHTDSKYVLQGITEWMGNWKKRGWKTSANKPVKN-EDLWRRLDQSIQRHS 115
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
++W +V GH GN AD +A
Sbjct: 116 IEWVWVKGHSGDPGNETADSLA 137
>gi|408378699|ref|ZP_11176296.1| ribonuclease H [Agrobacterium albertimagni AOL15]
gi|407747836|gb|EKF59355.1| ribonuclease H [Agrobacterium albertimagni AOL15]
Length = 156
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV ++TDGAC N G G+G + +GE G+ TNN E+ I AL
Sbjct: 3 HVEIYTDGACSGNPGPG---GWGAVLRYGETEKELSGGEAD--TTNNRMELLATITALNA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K A V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L Q
Sbjct: 58 LKDAC--EVDLYTDSKYVMDGISKWIFGWKKNGWKTADKKPVKNG-ELWQALDVANQRHK 114
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
VKW +V GH N +ADE+AR
Sbjct: 115 VKWHWVKGHAGHPENERADELAR 137
>gi|339483061|ref|YP_004694847.1| Ribonuclease H [Nitrosomonas sp. Is79A3]
gi|338805206|gb|AEJ01448.1| Ribonuclease H [Nitrosomonas sp. Is79A3]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N VG Y G + K+T TNN E+ AI AL+ K
Sbjct: 7 VEIYTDGACKGNPGVGGWGALLRYAGREREIFGGEKLT---TNNRMELLAAIRALESLKR 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DSQ++ K + +W+ W+ WR ++ KPV+N E+L LL + Q ++W
Sbjct: 64 PC--KVHLHTDSQYVQKGISQWLDSWKVRNWRTSNRKPVKN-EDLWRLLDSLVQQHEIEW 120
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N +AD++A
Sbjct: 121 CWVRGHSGHIDNERADQLA 139
>gi|300691207|ref|YP_003752202.1| ribonuclease H (RNase H) [Ralstonia solanacearum PSI07]
gi|299078267|emb|CBJ50915.1| Ribonuclease H (RNase H) [Ralstonia solanacearum PSI07]
gi|344170784|emb|CCA83216.1| ribonuclease H (RNase H) [blood disease bacterium R229]
gi|344174438|emb|CCA86230.1| ribonuclease H (RNase H) [Ralstonia syzygii R24]
Length = 151
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G V G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVTAHEVSW 117
Query: 127 EFVPGHGNSHGNMKAD-------EMARDAA 149
+V GH GN AD EMAR AA
Sbjct: 118 HWVKGHAGHPGNEHADALANKGVEMARQAA 147
>gi|156935272|ref|YP_001439188.1| hypothetical protein ESA_03125 [Cronobacter sakazakii ATCC BAA-894]
gi|389842120|ref|YP_006344204.1| ribonuclease H [Cronobacter sakazakii ES15]
gi|417791677|ref|ZP_12439111.1| ribonuclease H [Cronobacter sakazakii E899]
gi|424798122|ref|ZP_18223664.1| Ribonuclease HI [Cronobacter sakazakii 696]
gi|429086687|ref|ZP_19149419.1| Ribonuclease HI [Cronobacter universalis NCTC 9529]
gi|429100219|ref|ZP_19162193.1| Ribonuclease HI [Cronobacter turicensis 564]
gi|429105738|ref|ZP_19167607.1| Ribonuclease HI [Cronobacter malonaticus 681]
gi|429109039|ref|ZP_19170809.1| Ribonuclease HI [Cronobacter malonaticus 507]
gi|429114121|ref|ZP_19175039.1| Ribonuclease HI [Cronobacter sakazakii 701]
gi|449309402|ref|YP_007441758.1| ribonuclease H [Cronobacter sakazakii SP291]
gi|189043691|sp|A7MI34.1|RNH_ENTS8 RecName: Full=Ribonuclease H; Short=RNase H
gi|156533526|gb|ABU78352.1| hypothetical protein ESA_03125 [Cronobacter sakazakii ATCC BAA-894]
gi|333954230|gb|EGL72098.1| ribonuclease H [Cronobacter sakazakii E899]
gi|387852596|gb|AFK00694.1| ribonuclease H [Cronobacter sakazakii ES15]
gi|423233843|emb|CCK05534.1| Ribonuclease HI [Cronobacter sakazakii 696]
gi|426286868|emb|CCJ88306.1| Ribonuclease HI [Cronobacter turicensis 564]
gi|426292461|emb|CCJ93720.1| Ribonuclease HI [Cronobacter malonaticus 681]
gi|426310196|emb|CCJ96922.1| Ribonuclease HI [Cronobacter malonaticus 507]
gi|426317250|emb|CCK01152.1| Ribonuclease HI [Cronobacter sakazakii 701]
gi|426506490|emb|CCK14531.1| Ribonuclease HI [Cronobacter universalis NCTC 9529]
gi|449099435|gb|AGE87469.1| ribonuclease H [Cronobacter sakazakii SP291]
Length = 158
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI +L+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVSLEALRE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L + Q E +KW
Sbjct: 62 HCI--VTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|440229602|ref|YP_007343395.1| ribonuclease HI [Serratia marcescens FGI94]
gi|440051307|gb|AGB81210.1| ribonuclease HI [Serratia marcescens FGI94]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQTEKSLSAGYRLT---TNNRMELMAAIVALETLT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I + +V+
Sbjct: 61 APCA--VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIAR-HTVQ 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +AR+AAG
Sbjct: 118 WEWVKGHAGHPENERCDVLAREAAG 142
>gi|68473460|ref|XP_719288.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
gi|46441100|gb|EAL00400.1| hypothetical protein CaO19.13057 [Candida albicans SC5314]
Length = 285
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENNPLNVA-------GKVTGRVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ NVA + + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNVAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
LK Q+ A + I SDS++ I+ V EW W NGW+ + G+ V NK+ +QE
Sbjct: 177 LKNIHNDLQSGKA-TGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQET 235
Query: 115 L---------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +Q ++++ V GH GN AD +A A
Sbjct: 236 VALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGA 279
>gi|443322915|ref|ZP_21051928.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
gi|442787333|gb|ELR97053.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
Length = 697
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGAIHALKQAK 65
++TDG+C N G A Y VY +P V + G TN E+ GAI AL +
Sbjct: 404 IYTDGSCLGNPGPGGWA-YVVY----SPQGVLAESGGHEHNTTNQRMELSGAIAALDYLE 458
Query: 66 SANI-DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D V + +DS+++IK + +W+ W+ N W+ + KPV N ++L + L + +V
Sbjct: 459 QTEYKDPVILYTDSEYVIKGITQWINGWKKNNWQTSAKKPVVN-QDLWQRLDLLNSQLNV 517
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
WE V GH + GN +ADE+AR A
Sbjct: 518 TWEHVRGHQGNEGNERADEIARSYA 542
>gi|398798329|ref|ZP_10557630.1| ribonuclease HI [Pantoea sp. GM01]
gi|398101046|gb|EJL91274.1| ribonuclease HI [Pantoea sp. GM01]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 10/146 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDG+C N G GYG + + E+ L G TNN E+ AI AL +A
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYREHEKLFSTGYRL--TTNNRMELMAAIVAL-EA 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ D V I +DSQ++ + + W+ W+ GW+ AD KPV+N + + L + E +
Sbjct: 59 LTQPCD-VVISTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWKRLDLALSNHE-I 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAAG 150
KWE+V GH N + DE+AR AAG
Sbjct: 117 KWEWVKGHAGHPENERCDELARSAAG 142
>gi|296101379|ref|YP_003611525.1| RNase HI [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295055838|gb|ADF60576.1| RNase HI [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ ++KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQ-HNIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARTAAA 142
>gi|30248166|ref|NP_840236.1| ribonuclease H [Nitrosomonas europaea ATCC 19718]
gi|81838786|sp|Q82XV8.1|RNH_NITEU RecName: Full=Ribonuclease H; Short=RNase H
gi|30180051|emb|CAD84051.1| probable ribonuclease hi protein [Nitrosomonas europaea ATCC 19718]
Length = 161
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC N +G G+GV + GE VT TNN E+ AI AL+
Sbjct: 10 VEIFTDGACKGNPGIG---GWGVCLKFDGEVREFFGGEPVT---TNNRMELLAAIRALQA 63
Query: 64 AKS----ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
+S RV + +DSQ++ K + EW+ W+ GW AD KPV+N E L + L Q+
Sbjct: 64 LESLPDTGQSLRVQLHTDSQYVQKGISEWVHSWKKRGWLTADKKPVKN-EALWKELDQLS 122
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W +V GH GN +AD +A
Sbjct: 123 RRYQVEWFWVRGHNGHDGNERADMLA 148
>gi|73541876|ref|YP_296396.1| ribonuclease H [Ralstonia eutropha JMP134]
gi|123732893|sp|Q46Z81.1|RNH_RALEJ RecName: Full=Ribonuclease H; Short=RNase H
gi|72119289|gb|AAZ61552.1| Ribonuclease H [Ralstonia eutropha JMP134]
Length = 145
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V++++DGAC N G G+G G N G+ TNN E+ I AL+
Sbjct: 4 VIIYSDGACKGNPGRG---GWGAVLVAGTNEKELFGGEAN--TTNNRMEMTAVIEALRAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ++ K + EW+P W++ GW+ AD KPV+N + QE L + Q +
Sbjct: 59 KRPCT--VQVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQE-LDTLVQPHKI 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 116 TWHWVRGHNGHPGNERADALA 136
>gi|422322527|ref|ZP_16403568.1| RnhA protein [Achromobacter xylosoxidans C54]
gi|317402508|gb|EFV83075.1| RnhA protein [Achromobacter xylosoxidans C54]
Length = 153
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G G+GV + TNN E+ I L+
Sbjct: 8 DQKVEMWTDGACKGNPGPG---GWGVLMRAGVHEKTMHGGEAQTTNNRMELLAVIEGLRA 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V I +DSQ+++K + EW+ W+ GW AD KPV+N E Q L Q+ + +
Sbjct: 65 LKRPCA--VTIHTDSQYVMKGMTEWLSNWKRRGWMTADKKPVKNAELWQSLDEQV-RRHT 121
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN +AD++A
Sbjct: 122 VSWRWVRGHAGDPGNERADQLA 143
>gi|165933678|ref|YP_001650467.1| ribonuclease H [Rickettsia rickettsii str. Iowa]
gi|379018253|ref|YP_005294488.1| ribonuclease H [Rickettsia rickettsii str. Hino]
gi|165908765|gb|ABY73061.1| ribonuclease HI [Rickettsia rickettsii str. Iowa]
gi|376330819|gb|AFB28055.1| ribonuclease H [Rickettsia rickettsii str. Hino]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ V+++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVLIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ KPV+N + Q+L ++ +
Sbjct: 62 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNKPVKNADLWQKLYTELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|157147190|ref|YP_001454509.1| ribonuclease H [Citrobacter koseri ATCC BAA-895]
gi|189043686|sp|A8AKR0.1|RNH_CITK8 RecName: Full=Ribonuclease H; Short=RNase H
gi|157084395|gb|ABV14073.1| hypothetical protein CKO_02969 [Citrobacter koseri ATCC BAA-895]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYSLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|409426223|ref|ZP_11260785.1| ribonuclease H [Pseudomonas sp. HYS]
Length = 148
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L + T TNN E+ AI L+
Sbjct: 3 DSVEIFTDGACKGNPGPGGWGVLMVCKGVEKELWGGERDT---TNNRMELMAAIKGLEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+G+ V
Sbjct: 60 KREC--EVLLVTDSQYVMKGITEWMVNWKKRGWKTASKEPVKNADLWQLLDEQVGR-HKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHVGHHGNERADQLA 137
>gi|332286829|ref|YP_004418740.1| ribonuclease H [Pusillimonas sp. T7-7]
gi|330430782|gb|AEC22116.1| ribonuclease H [Pusillimonas sp. T7-7]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
++ V ++TDGAC N +G G+G + TNN E+ I ALK
Sbjct: 3 NDQVEIWTDGACKGNPGMG---GWGALLRQGRHEKTLYGGEPGTTNNRMELMAVIQALKA 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++ K + EW+ W+ GWR AD KPV+N + QEL + Q +
Sbjct: 60 LKRPC--QVTVHTDSQYVQKGMSEWLANWKRRGWRTADKKPVKNADLWQELDALVEQ-HT 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+ W +V GH GN +AD++A
Sbjct: 117 LIWRWVRGHAGDPGNERADQLA 138
>gi|163795034|ref|ZP_02189003.1| RNase H [alpha proteobacterium BAL199]
gi|159179853|gb|EDP64380.1| RNase H [alpha proteobacterium BAL199]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G + G L+ A +T TNN E+ AI +L +A
Sbjct: 9 RVAIFTDGACSGNPGPGGWGAVMCWRGTEKELSGAEPLT---TNNRMELMAAIASL-EAL 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S + V + +DS ++ + +WM W++ GW+ AD KPV+N ++L E L + V
Sbjct: 65 SRRVP-VDLTTDSTYVRDGITKWMKAWKARGWKTADKKPVKN-QDLWERLDAAAKAHDVA 122
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
W +V GH N +ADE+AR A
Sbjct: 123 WHWVKGHAGHPENERADELARMA 145
>gi|237730198|ref|ZP_04560679.1| ribonuclease H [Citrobacter sp. 30_2]
gi|421845701|ref|ZP_16278854.1| ribonuclease H [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|226905737|gb|EEH91655.1| ribonuclease H [Citrobacter sp. 30_2]
gi|411773236|gb|EKS56807.1| ribonuclease H [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|455646773|gb|EMF25800.1| ribonuclease H [Citrobacter freundii GTC 09479]
Length = 155
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +G + +K
Sbjct: 61 EQC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARTAA 141
>gi|120554454|ref|YP_958805.1| ribonuclease H [Marinobacter aquaeolei VT8]
gi|387814170|ref|YP_005429653.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|187611379|sp|A1U0U9.1|RNH_MARAV RecName: Full=Ribonuclease H; Short=RNase H
gi|120324303|gb|ABM18618.1| ribonuclease H [Marinobacter aquaeolei VT8]
gi|381339183|emb|CCG95230.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 147
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++TDGAC N G G+GV + + TNN E+ AI L++ K
Sbjct: 5 VVMYTDGACKGNPGPG---GWGVVLRYGDACKTMHGGELQTTNNRMELMAAIRGLRELKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A +V + +DSQ++ K + EWM W+ NGW+ + KPV+N + QEL + + +V W
Sbjct: 62 AC--QVELYTDSQYVRKGITEWMSGWKRNGWKTSAKKPVKNADLWQELDAETAR-HTVNW 118
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N ADE+A
Sbjct: 119 HWVKGHSGHPDNELADELA 137
>gi|107101247|ref|ZP_01365165.1| hypothetical protein PaerPA_01002280 [Pseudomonas aeruginosa PACS2]
gi|386059292|ref|YP_005975814.1| ribonuclease H [Pseudomonas aeruginosa M18]
gi|424941043|ref|ZP_18356806.1| ribonuclease H [Pseudomonas aeruginosa NCMG1179]
gi|451982747|ref|ZP_21931049.1| Ribonuclease HI [Pseudomonas aeruginosa 18A]
gi|346057489|dbj|GAA17372.1| ribonuclease H [Pseudomonas aeruginosa NCMG1179]
gi|347305598|gb|AEO75712.1| ribonuclease H [Pseudomonas aeruginosa M18]
gi|451759524|emb|CCQ83572.1| Ribonuclease HI [Pseudomonas aeruginosa 18A]
Length = 141
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
+++TDGAC N G +Y G L T TNN E+ AI AL K +
Sbjct: 1 MIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQALAALKRS 57
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ + + V+W+
Sbjct: 58 CPIRLI--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQ-VEWQ 114
Query: 128 FVPGHGNSHGNMKADEMA 145
+V GH GN +AD++A
Sbjct: 115 WVRGHTGDPGNERADQLA 132
>gi|429082334|ref|ZP_19145409.1| Ribonuclease HI [Cronobacter condimenti 1330]
gi|426548944|emb|CCJ71450.1| Ribonuclease HI [Cronobacter condimenti 1330]
Length = 158
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI +L+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVSLEALRE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + Q E +KW
Sbjct: 62 HCT--VTLSTDSQYVRQGITQWIHNWKRRGWKTADKKPVKNVDLWQRLDAALSQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|374319681|ref|YP_005066180.1| Ribonuclease H [Rickettsia slovaca 13-B]
gi|21362887|sp|Q92GL5.2|RNH_RICCN RecName: Full=Ribonuclease HI; Short=RNase HI
gi|360042230|gb|AEV92612.1| Ribonuclease H [Rickettsia slovaca 13-B]
Length = 152
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 2 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 59 LKKSCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 115 TIIWKWVKGHANNSGNIAADKLA 137
>gi|410092124|ref|ZP_11288664.1| ribonuclease H [Pseudomonas viridiflava UASWS0038]
gi|409760552|gb|EKN45685.1| ribonuclease H [Pseudomonas viridiflava UASWS0038]
Length = 150
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|81300992|ref|YP_401200.1| RNase HI [Synechococcus elongatus PCC 7942]
gi|81169873|gb|ABB58213.1| RNase HI [Synechococcus elongatus PCC 7942]
Length = 259
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D + ++TDGAC N G G + F + + G+ TNN E+Q AI AL+
Sbjct: 3 DAILRLYTDGACTGNPGPGG-WGVQIQFADGTVQELGGRDAA-TTNNRMELQAAIAALEF 60
Query: 64 AKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ ++ V + +DS+++IK + +W+ WQ GW+ A GKPV N Q+L + +
Sbjct: 61 WRDHSDQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLN----QDLWMHLDDLN 116
Query: 123 S--VKWEFVPGHGNSHGNMKADEMARDAA 149
S V+W++V GH GN + D++AR A
Sbjct: 117 SPAVQWQYVRGHSGDPGNERCDQIARSFA 145
>gi|300871726|ref|YP_003786599.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
gi|404476350|ref|YP_006707781.1| ribonuclease H [Brachyspira pilosicoli B2904]
gi|431807531|ref|YP_007234429.1| ribonuclease H [Brachyspira pilosicoli P43/6/78]
gi|300689427|gb|ADK32098.1| ribonuclease H [Brachyspira pilosicoli 95/1000]
gi|404437839|gb|AFR71033.1| ribonuclease H [Brachyspira pilosicoli B2904]
gi|430780890|gb|AGA66174.1| ribonuclease H [Brachyspira pilosicoli P43/6/78]
Length = 163
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNV-AGKVTGRVTNNNAEIQGAIH 59
M DN ++++TDG C N +GA + E + L + G+ TNN E+Q AI
Sbjct: 1 MQKDN-IIIYTDGGCRGNPGIGAWGA--ILLSEKHNLRLEIGESEEHTTNNKMEMQAAIK 57
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL++ K ++ + + SDS +++ + W+ WQ N W K+D KPV+NK+ +L+ ++
Sbjct: 58 ALERLKHSH--NIKLYSDSAYLVNGMNSWIYSWQKNNWIKSDKKPVENKDYWLKLI-ELS 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
+ S+++ V GH ++ N +ADE+
Sbjct: 115 KKHSIEFIKVKGHSSNKENNRADEIV 140
>gi|238759159|ref|ZP_04620327.1| Ribonuclease H [Yersinia aldovae ATCC 35236]
gi|238702575|gb|EEP95124.1| Ribonuclease H [Yersinia aldovae ATCC 35236]
Length = 154
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDG+C N G GYG + + ++ + AG TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHEKMFSAGYYL--TTNNRMELMAAIVALEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
S V I +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q ++
Sbjct: 60 TSPC--EVTISTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNMDLWQRLDLAI-QTHTI 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+WE+V GH N + DE+AR AA
Sbjct: 117 QWEWVKGHAGHPENERCDELARLAA 141
>gi|312199471|ref|YP_004019532.1| ribonuclease H [Frankia sp. EuI1c]
gi|311230807|gb|ADP83662.1| Ribonuclease H [Frankia sp. EuI1c]
Length = 192
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDGAC P G GA YG + + G G TNN E+ AI AL+
Sbjct: 47 VEIYTDGACKGNPGPGGWGAVLRYGTH-----ERAICGGEAGDTTNNRMELMAAIMALEA 101
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
++ R I +DSQ++ + EW+ +W+ NGW+ + KPV+N +L + L ++
Sbjct: 102 LTRPSVVR--IHTDSQYLRSGINEWLARWKRNGWKTGEKKPVKNV-DLWQRLDAATRVHD 158
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN AD++A
Sbjct: 159 VEWLWVRGHAGDPGNELADQLA 180
>gi|332637681|ref|ZP_08416544.1| RNase HI [Weissella cibaria KACC 11862]
Length = 233
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 5 NHVVVFTDGACPRNGKVG---------ASAGYGVYFGENNPLNV---AGKVTGRVTNNNA 52
+ +FTDG G V A+ +Y G++ V +G GR TNN
Sbjct: 74 SRYYIFTDGGSRNTGNVAGGHVRPTDKAAWAIAIYRGDDMQTPVFTDSGAFFGR-TNNEM 132
Query: 53 EIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKP--VQNKEE 110
EI G I+AL Q + + V I SDS++++ V +WM WQSNGWRKA G+ + ++
Sbjct: 133 EILGLINALLQMAKVS-EPVTIVSDSKYVLDTVTDWMYNWQSNGWRKASGEIANLTAWQQ 191
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+ EL+ Q+ + W V GH S GN++ D++ DA
Sbjct: 192 VYELVQQVQDRLAFIW--VKGHATSAGNIRVDQLLNDA 227
>gi|157369156|ref|YP_001477145.1| ribonuclease H [Serratia proteamaculans 568]
gi|189043710|sp|A8GA77.1|RNH_SERP5 RecName: Full=Ribonuclease H; Short=RNase H
gi|157320920|gb|ABV40017.1| Ribonuclease H [Serratia proteamaculans 568]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQTEKTFSAGFRLT---TNNRMEMMAAIVALEALT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q +VK
Sbjct: 61 TPC--EVTLSTDSQYVRQGITTWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QRHTVK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + D +ARDAA
Sbjct: 118 WEWVKGHAGHPENERCDVLARDAA 141
>gi|15893031|ref|NP_360745.1| ribonuclease H [Rickettsia conorii str. Malish 7]
gi|34581281|ref|ZP_00142761.1| ribonuclease H [Rickettsia sibirica 246]
gi|341584280|ref|YP_004764771.1| ribonuclease H [Rickettsia heilongjiangensis 054]
gi|350273846|ref|YP_004885159.1| ribonuclease H [Rickettsia japonica YH]
gi|383481977|ref|YP_005390892.1| ribonuclease H [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|383482600|ref|YP_005391514.1| ribonuclease H [Rickettsia montanensis str. OSU 85-930]
gi|383751745|ref|YP_005426846.1| ribonuclease H [Rickettsia slovaca str. D-CWPP]
gi|15620232|gb|AAL03646.1| ribonuclease H [Rickettsia conorii str. Malish 7]
gi|28262666|gb|EAA26170.1| ribonuclease H [Rickettsia sibirica 246]
gi|340808505|gb|AEK75093.1| ribonuclease H [Rickettsia heilongjiangensis 054]
gi|348593059|dbj|BAK97020.1| ribonuclease H [Rickettsia japonica YH]
gi|378934316|gb|AFC72819.1| ribonuclease H [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378934954|gb|AFC73455.1| ribonuclease H [Rickettsia montanensis str. OSU 85-930]
gi|379774759|gb|AFD20115.1| ribonuclease H [Rickettsia slovaca str. D-CWPP]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|443473083|ref|ZP_21063108.1| Ribonuclease HI [Pseudomonas pseudoalcaligenes KF707]
gi|442903646|gb|ELS28937.1| Ribonuclease HI [Pseudomonas pseudoalcaligenes KF707]
Length = 147
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G VY G L T TNN E+ AI L K
Sbjct: 5 VEIYTDGACKGNPGPGGWGALLVYKGAERELWGGEPDT---TNNRMELMAAIMGLVALKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V I +DSQ++++ + EWMP W+ GW+ A +PV+N + Q L Q+ + +V+W
Sbjct: 62 SC--EVKIITDSQYVMQGITEWMPNWKKRGWKTAAKQPVKNADLWQALDEQV-KRHNVRW 118
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH GN +AD++A
Sbjct: 119 QWVRGHTGHPGNERADQLA 137
>gi|341882748|gb|EGT38683.1| hypothetical protein CAEBREN_07473 [Caenorhabditis brenneri]
Length = 140
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGAKAGYGVYFGEGSQYNRSGRVDGIQDSNRGELRAAQVAINSAK 63
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL---LHQIGQME 122
S + + I +DSQ++ V +QS G QN++ +Q + + G +
Sbjct: 64 SQGLGSITIHTDSQYVRDAV-HGASGFQSAG---------QNRDLMQSIHDSVRTTGMI- 112
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
V E V GH N GN A ++A A
Sbjct: 113 -VNVELVKGHSNDPGNDAAHKLATQGA 138
>gi|344231820|gb|EGV63702.1| hypothetical protein CANTEDRAFT_114804 [Candida tenuis ATCC 10573]
Length = 234
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG----RVTNNNAEI 54
+ D + ++ DGA NGK A AGYGVY + +P ++VA + TN E+
Sbjct: 61 ISSDQKIEIYCDGAAKNNGKSNALAGYGVYIKDLSPKGISVAYDQISIDKLKPTNQFMEL 120
Query: 55 QGAIHALKQAKSA--------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQ 106
HAL S+ + I +DSQF I C+ W W+SNGW G+PV
Sbjct: 121 YAIRHALMIIFSSLEHCKRYEGKTSIKILTDSQFSINCLTVWYKNWESNGWVNTAGRPVI 180
Query: 107 NKEELQELLHQIGQMES---VKWEFVPGHGNSHGNMKADEMARDAA 149
+++ +++ L I ++ + E+VPGH GN AD +A A
Sbjct: 181 HQQCVRDCLKLIDSIKDSVILSIEYVPGHSGFLGNEVADRLANIAC 226
>gi|307545282|ref|YP_003897761.1| ribonuclease H [Halomonas elongata DSM 2581]
gi|307217306|emb|CBV42576.1| ribonuclease H [Halomonas elongata DSM 2581]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G G+G + TNN E+ AI AL+ K
Sbjct: 13 VTIYTDGACRGNPGPG---GWGALLVSGEHEKALKGAEAKTTNNRMELMAAIMALRALKR 69
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DS+++ + + EW+ W W+ A KPV+N EL LH+ + SV+W
Sbjct: 70 PC--RVALWTDSEYLRRGITEWIHGWIKRDWKTASRKPVKNA-ELWRDLHEQSKRHSVEW 126
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH GN +AD +A +A
Sbjct: 127 HWVKGHSGHPGNERADALANEA 148
>gi|222056552|ref|YP_002538914.1| ribonuclease H [Geobacter daltonii FRC-32]
gi|221565841|gb|ACM21813.1| Ribonuclease H [Geobacter daltonii FRC-32]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +F DGAC N VG G+G + + G TNN E+ AI AL
Sbjct: 3 VEIFCDGACSGNPGVG---GWGCILRYGDNVKEMSGADGNTTNNRMEMTAAIEAL----- 54
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A++ R C + +DSQ+++K + EW+ W GW + +PV N+ EL E L ++ ++ +
Sbjct: 55 ASLKRPCEVHLTTDSQYLVKGMTEWIGGWVRKGWVNSKKEPVLNR-ELWERLMELSRLHT 113
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
+ W +V GH N + DE+AR A
Sbjct: 114 IHWLWVRGHNGHPENERCDELARAA 138
>gi|254420376|ref|ZP_05034100.1| RNase H [Brevundimonas sp. BAL3]
gi|196186553|gb|EDX81529.1| RNase H [Brevundimonas sp. BAL3]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 23/154 (14%)
Query: 1 MDPDNHVVVFTDGAC---PRNGKVGASAGYG------VYFGENNPLNVAGKVTGRVTNNN 51
M P +HV++ TDGAC P G GA G ++ GE N TNN
Sbjct: 1 MSPTDHVIIHTDGACKGNPGPGGWGALLQTGGGHEKELWGGEPN-----------TTNNR 49
Query: 52 AEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEEL 111
E+ AI AL+ K RV + +DS+++++ + EWM W++ GW AD KPV+N +L
Sbjct: 50 MELMAAIMALEALKRPC--RVELHTDSKYVMQGITEWMRGWKARGWLTADKKPVKN-ADL 106
Query: 112 QELLHQIGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ L VKW +V GH N +AD++A
Sbjct: 107 WQRLDAARLKHDVKWRWVKGHAGHELNERADQLA 140
>gi|341885909|gb|EGT41844.1| hypothetical protein CAEBREN_19546 [Caenorhabditis brenneri]
Length = 140
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLSGAKAGYGVYFGEGSRYNQSGRVNGIQDSNRGELRAAQEAINLAK 63
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM-ESV 124
S + + I +DSQ++ V +QS G QN++ +Q + + V
Sbjct: 64 SQGLGSITIHTDSQYVRDAVH-GASGFQSAG---------QNRDLMQSIHDSVRTTGMRV 113
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
E V GH N GN A ++A
Sbjct: 114 NVELVKGHSNDPGNDAAHKLA 134
>gi|449143589|ref|ZP_21774412.1| Ribonuclease HI [Vibrio mimicus CAIM 602]
gi|449080587|gb|EMB51498.1| Ribonuclease HI [Vibrio mimicus CAIM 602]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQT 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|325920992|ref|ZP_08182878.1| RNase HI [Xanthomonas gardneri ATCC 19865]
gi|325548526|gb|EGD19494.1| RNase HI [Xanthomonas gardneri ATCC 19865]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L G+ T TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKEL-AGGEATS--TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWM W GW+ A G PV+N+ EL E LH Q S+ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMSGWVRRGWKTAGGDPVKNR-ELWERLHAATQRHSIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|258621020|ref|ZP_05716054.1| Ribonuclease HI [Vibrio mimicus VM573]
gi|424807448|ref|ZP_18232856.1| ribonuclease HI [Vibrio mimicus SX-4]
gi|258586408|gb|EEW11123.1| Ribonuclease HI [Vibrio mimicus VM573]
gi|342325390|gb|EGU21170.1| ribonuclease HI [Vibrio mimicus SX-4]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQT 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVVLTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|260596630|ref|YP_003209201.1| ribonuclease H [Cronobacter turicensis z3032]
gi|260215807|emb|CBA28257.1| Ribonuclease H [Cronobacter turicensis z3032]
Length = 196
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDG+C N G Y + ++T TNN E+ AI +L+
Sbjct: 41 KQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVSLEAL 97
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ I V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L + Q E +
Sbjct: 98 REHCI--VTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHE-I 154
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
KWE+V GH N + DE+AR AA
Sbjct: 155 KWEWVKGHAGHPENERCDELARAAA 179
>gi|431931689|ref|YP_007244735.1| ribonuclease HI [Thioflavicoccus mobilis 8321]
gi|431829992|gb|AGA91105.1| ribonuclease HI [Thioflavicoccus mobilis 8321]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 22/147 (14%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYG-----VYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+ ++TDGAC P G GA G +Y GE TNN E+ I
Sbjct: 5 IEIYTDGACKGNPGRGGWGALLRSGPHEKELYGGEPE-----------TTNNRMELMAVI 53
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K + RV I +DSQ++ + V EWM +W+ NGWR A +PV+N++ + L +
Sbjct: 54 RALEALKRPS--RVRITTDSQYVKRGVTEWMARWKRNGWRTAAREPVKNRDLWERLDQAL 111
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
G+ + V+W++V GH N +AD +A
Sbjct: 112 GRHQ-VEWQWVRGHAGHPDNERADRLA 137
>gi|335424998|ref|ZP_08553989.1| ribonuclease H [Salinisphaera shabanensis E1L3A]
gi|334886674|gb|EGM25021.1| ribonuclease H [Salinisphaera shabanensis E1L3A]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++TDGAC N G G+G GEN G+ TNN E+ AI AL
Sbjct: 5 VVIYTDGACRGNPGPG---GWGALLRHGENTRELCGGEAN--TTNNRMELMAAIEALNAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K A RV + +DS ++ + + WM W+ NGW+ A KPV+N ++L L + Q +
Sbjct: 60 KRAC--RVELHTDSNYVRQGITSWMHNWKRNGWKTAAKKPVKN-DDLWRALDEATQRHEI 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH GN AD +A
Sbjct: 117 EWHWVKGHSGDPGNEAADALA 137
>gi|289664176|ref|ZP_06485757.1| ribonuclease H [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289668768|ref|ZP_06489843.1| ribonuclease H [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q S+ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHSIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVRGHNGDPDNERVDVLARNQA 140
>gi|327294335|ref|XP_003231863.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
gi|326465808|gb|EGD91261.1| hypothetical protein TERG_07483 [Trichophyton rubrum CBS 118892]
Length = 220
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 1 MDPD-NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAI 58
++P+ +++ DGAC NG A GVY G + N + ++ TN AE+ I
Sbjct: 60 LEPNLRSIIIAVDGACRENGATAPRAAIGVYVGNKSDYNASMQLDSSWATNQKAELAAGI 119
Query: 59 HALKQAKSAN--------IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
+ L A+ N + V IK+DS +M+ + +W+ +W++NG+ ADG+ V N
Sbjct: 120 YGLDAAREINDYGVDGESLTEVIIKTDSAYMVNGLTQWVDRWEANGYINADGQQVTNHYL 179
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+EL ++ ++ + + N +AD++ARDA
Sbjct: 180 FKELSWRVRELAEFHVKVYFWNVRREHNREADQLARDA 217
>gi|445496893|ref|ZP_21463748.1| ribonuclease H [Janthinobacterium sp. HH01]
gi|444786888|gb|ELX08436.1| ribonuclease H [Janthinobacterium sp. HH01]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF-GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDGAC N +G G+G + E + G T TNN E+Q I AL
Sbjct: 2 DKVEIFTDGACKGNPGLG---GWGAFLVAEGAEKEICGG-TRDTTNNRMELQAVIEALNA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DSQ++ K + EW+ W++ GW+ A +PV+N E+L L M +
Sbjct: 58 LKRPCM--VTLHTDSQYVQKGISEWIHGWKARGWKTAAKEPVKN-EDLWRALDAAQAMHT 114
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN +AD +A
Sbjct: 115 VEWRWVRGHNGHPGNERADMLA 136
>gi|17546232|ref|NP_519634.1| ribonuclease H [Ralstonia solanacearum GMI1000]
gi|22096082|sp|Q8XZ91.1|RNH_RALSO RecName: Full=Ribonuclease H; Short=RNase H
gi|17428529|emb|CAD15215.1| probable ribonuclease h (rnase h) protein [Ralstonia solanacearum
GMI1000]
Length = 151
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G V G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVVTHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|383484424|ref|YP_005393337.1| ribonuclease H [Rickettsia parkeri str. Portsmouth]
gi|378936778|gb|AFC75278.1| ribonuclease H [Rickettsia parkeri str. Portsmouth]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNVAADKLA 140
>gi|30173168|sp|Q8GF77.1|RNH_PHOLU RecName: Full=Ribonuclease H; Short=RNase H
gi|27479697|gb|AAO17224.1| RnhA [Photorhabdus luminescens]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYGV + R TNN E+ AI L+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGVLLRYQQHEKTLSEGFYRTTNNRMELMAAIIGLETLTR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + +W+ W+ GWRKAD PV N + Q L I + + + W
Sbjct: 62 PC--KIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHD-IDW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH + N DE+AR AA
Sbjct: 119 QWVKGHSGHNENEHCDELARAAA 141
>gi|344231819|gb|EGV63701.1| ribonuclease H-like protein [Candida tenuis ATCC 10573]
Length = 293
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNP--LNVAGKVTG----RVTNNNAEI 54
+ D + ++ DGA NGK A AGYGVY + +P ++VA + TN E+
Sbjct: 120 ISSDQKIEIYCDGAAKNNGKSNALAGYGVYIKDLSPKGISVAYDQISIDKLKPTNQFMEL 179
Query: 55 QGAIHALKQAKSA--------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQ 106
HAL S+ + I +DSQF I C+ W W+SNGW G+PV
Sbjct: 180 YAIRHALMIIFSSLEHCKRYEGKTSIKILTDSQFSINCLTVWYKNWESNGWVNTAGRPVI 239
Query: 107 NKEELQELLHQIGQMES---VKWEFVPGHGNSHGNMKADEMARDAA 149
+++ +++ L I ++ + E+VPGH GN AD +A A
Sbjct: 240 HQQCVRDCLKLIDSIKDSVILSIEYVPGHSGFLGNEVADRLANIAC 285
>gi|354721526|ref|ZP_09035741.1| RNase HI [Enterobacter mori LMG 25706]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ + +KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|384426852|ref|YP_005636209.1| RNase H [Xanthomonas campestris pv. raphani 756C]
gi|341935952|gb|AEL06091.1| RNase H [Xanthomonas campestris pv. raphani 756C]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L G+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKEL-AGGEANS--TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W GW+ + G PV+N+ EL E LH Q +++W
Sbjct: 61 PC--QILLHTDSQYVRQGITEWMPGWVRRGWKTSGGDPVKNR-ELWERLHAATQRHTIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|332981970|ref|YP_004463411.1| RNase HI [Mahella australiensis 50-1 BON]
gi|332699648|gb|AEE96589.1| RNase HI [Mahella australiensis 50-1 BON]
Length = 142
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G A Y G + +T TNN E+ AI AL+ K
Sbjct: 4 VTIYTDGACTNNPGPGGWAAILDYKGCVKEIYGGEPLT---TNNRMELTAAIKALEALKE 60
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDS ++I Q W+ KW NGW+ G PV+NK +L E L ++ +M +K
Sbjct: 61 PCY--VELYSDSAYLINAFNQHWVNKWMRNGWKTISGDPVENK-DLWERLVELTKMHEIK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
W V GH ++ N + DE+A++A
Sbjct: 118 WVKVKGHSDNEYNNRCDELAKNA 140
>gi|283834500|ref|ZP_06354241.1| ribonuclease HI [Citrobacter youngae ATCC 29220]
gi|291070050|gb|EFE08159.1| ribonuclease HI [Citrobacter youngae ATCC 29220]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +G + +K
Sbjct: 61 EQC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|407925890|gb|EKG18864.1| hypothetical protein MPH_03880 [Macrophomina phaseolina MS6]
Length = 239
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALK- 62
N ++V DGAC RNG A A GV+F +P N A + TN AE+ AI AL+
Sbjct: 49 NSIIVSADGACRRNGHSRAQASIGVFFKVGSPYNEAHVLPEATPTNQRAELFAAITALRA 108
Query: 63 -------------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE 109
+ N+ + +K+DS++++K + EW+ KW+ NGW+ A G PV N+E
Sbjct: 109 VGALIYGGDLPQDMGELGNLRLLVLKTDSEYVVKGMTEWIHKWKLNGWQNAKGLPVVNQE 168
Query: 110 ELQEL---LHQIGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ L + + Q V+ F+ H N ADE+A
Sbjct: 169 LFKRLNGFVAALDQHNGVEVRFL--HVPRELNKGADELA 205
>gi|383313042|ref|YP_005365843.1| ribonuclease H [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|378931702|gb|AFC70211.1| ribonuclease H [Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 155
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEIFGYELDTTNNRMEITAALEALRI 61
Query: 64 AK-SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K S NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKTSCNIE---IYTDSKYLKQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|381170427|ref|ZP_09879584.1| RNase H family protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|380689088|emb|CCG36071.1| RNase H family protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 150
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q+ + W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQLHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|330825716|ref|YP_004389019.1| ribonuclease H [Alicycliphilus denitrificans K601]
gi|329311088|gb|AEB85503.1| Ribonuclease H [Alicycliphilus denitrificans K601]
Length = 148
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N VV++TDGAC N G G+GV GE G++ TNN E+ I AL
Sbjct: 2 NQVVIYTDGACKGNPGPG---GWGVVLRSGELEKELFGGELG--TTNNRMELMAVIQALA 56
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIG 119
K +V + DSQ++ + + EW+ W+ GWR A G+PV+N E L EL H+ G
Sbjct: 57 ALKRPC--QVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHKAG 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
++W +V GH GN +AD +A
Sbjct: 115 H--RIEWHWVKGHAGDPGNERADALA 138
>gi|386333228|ref|YP_006029397.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum Po82]
gi|334195676|gb|AEG68861.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum Po82]
Length = 151
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G V G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVVAHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|153825359|ref|ZP_01978026.1| ribonuclease HI [Vibrio cholerae MZO-2]
gi|153829943|ref|ZP_01982610.1| ribonuclease HI [Vibrio cholerae 623-39]
gi|183179466|ref|ZP_02957677.1| ribonuclease HI [Vibrio cholerae MZO-3]
gi|229513877|ref|ZP_04403339.1| ribonuclease HI [Vibrio cholerae TMA 21]
gi|229522181|ref|ZP_04411598.1| ribonuclease HI [Vibrio cholerae TM 11079-80]
gi|229524237|ref|ZP_04413642.1| ribonuclease HI [Vibrio cholerae bv. albensis VL426]
gi|229528762|ref|ZP_04418152.1| ribonuclease HI [Vibrio cholerae 12129(1)]
gi|254225775|ref|ZP_04919380.1| ribonuclease HI [Vibrio cholerae V51]
gi|254286457|ref|ZP_04961414.1| ribonuclease HI [Vibrio cholerae AM-19226]
gi|262192141|ref|ZP_06050302.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
gi|297580876|ref|ZP_06942801.1| ribonuclease HI [Vibrio cholerae RC385]
gi|384425199|ref|YP_005634557.1| Ribonuclease HI [Vibrio cholerae LMA3984-4]
gi|417821566|ref|ZP_12468180.1| ribonuclease HI [Vibrio cholerae HE39]
gi|417825469|ref|ZP_12472057.1| ribonuclease HI [Vibrio cholerae HE48]
gi|419830684|ref|ZP_14354169.1| RNase H family protein [Vibrio cholerae HC-1A2]
gi|419837942|ref|ZP_14361380.1| ribonuclease HI [Vibrio cholerae HC-46B1]
gi|421343877|ref|ZP_15794280.1| ribonuclease HI [Vibrio cholerae HC-43B1]
gi|421351954|ref|ZP_15802319.1| ribonuclease HI [Vibrio cholerae HE-25]
gi|421354934|ref|ZP_15805266.1| ribonuclease HI [Vibrio cholerae HE-45]
gi|422918073|ref|ZP_16952391.1| ribonuclease HI [Vibrio cholerae HC-02A1]
gi|422923537|ref|ZP_16956685.1| ribonuclease HI [Vibrio cholerae BJG-01]
gi|423735899|ref|ZP_17709091.1| RNase H family protein [Vibrio cholerae HC-41B1]
gi|423822975|ref|ZP_17716985.1| RNase H family protein [Vibrio cholerae HC-55C2]
gi|423856940|ref|ZP_17720792.1| RNase H family protein [Vibrio cholerae HC-59A1]
gi|423883568|ref|ZP_17724379.1| RNase H family protein [Vibrio cholerae HC-60A1]
gi|423957541|ref|ZP_17735284.1| RNase H family protein [Vibrio cholerae HE-40]
gi|423985521|ref|ZP_17738835.1| RNase H family protein [Vibrio cholerae HE-46]
gi|423998498|ref|ZP_17741750.1| ribonuclease HI [Vibrio cholerae HC-02C1]
gi|424010237|ref|ZP_17753171.1| ribonuclease HI [Vibrio cholerae HC-44C1]
gi|424017395|ref|ZP_17757224.1| ribonuclease HI [Vibrio cholerae HC-55B2]
gi|424020320|ref|ZP_17760103.1| ribonuclease HI [Vibrio cholerae HC-59B1]
gi|424625694|ref|ZP_18064155.1| ribonuclease HI [Vibrio cholerae HC-50A1]
gi|424630181|ref|ZP_18068465.1| ribonuclease HI [Vibrio cholerae HC-51A1]
gi|424634225|ref|ZP_18072325.1| ribonuclease HI [Vibrio cholerae HC-52A1]
gi|424637303|ref|ZP_18075311.1| ribonuclease HI [Vibrio cholerae HC-55A1]
gi|424641210|ref|ZP_18079093.1| ribonuclease HI [Vibrio cholerae HC-56A1]
gi|424649278|ref|ZP_18086941.1| ribonuclease HI [Vibrio cholerae HC-57A1]
gi|429885886|ref|ZP_19367456.1| Ribonuclease HI [Vibrio cholerae PS15]
gi|443528196|ref|ZP_21094240.1| ribonuclease HI [Vibrio cholerae HC-78A1]
gi|125621681|gb|EAZ50010.1| ribonuclease HI [Vibrio cholerae V51]
gi|148874578|gb|EDL72713.1| ribonuclease HI [Vibrio cholerae 623-39]
gi|149741043|gb|EDM55112.1| ribonuclease HI [Vibrio cholerae MZO-2]
gi|150423406|gb|EDN15350.1| ribonuclease HI [Vibrio cholerae AM-19226]
gi|183012877|gb|EDT88177.1| ribonuclease HI [Vibrio cholerae MZO-3]
gi|229332536|gb|EEN98022.1| ribonuclease HI [Vibrio cholerae 12129(1)]
gi|229337818|gb|EEO02835.1| ribonuclease HI [Vibrio cholerae bv. albensis VL426]
gi|229341106|gb|EEO06111.1| ribonuclease HI [Vibrio cholerae TM 11079-80]
gi|229349058|gb|EEO14015.1| ribonuclease HI [Vibrio cholerae TMA 21]
gi|262031990|gb|EEY50567.1| ribonuclease HI [Vibrio cholerae CT 5369-93]
gi|297534702|gb|EFH73538.1| ribonuclease HI [Vibrio cholerae RC385]
gi|327484752|gb|AEA79159.1| Ribonuclease HI [Vibrio cholerae LMA3984-4]
gi|340039197|gb|EGR00172.1| ribonuclease HI [Vibrio cholerae HE39]
gi|340046954|gb|EGR07884.1| ribonuclease HI [Vibrio cholerae HE48]
gi|341636955|gb|EGS61649.1| ribonuclease HI [Vibrio cholerae HC-02A1]
gi|341643967|gb|EGS68226.1| ribonuclease HI [Vibrio cholerae BJG-01]
gi|395939957|gb|EJH50638.1| ribonuclease HI [Vibrio cholerae HC-43B1]
gi|395952399|gb|EJH63013.1| ribonuclease HI [Vibrio cholerae HE-25]
gi|395954059|gb|EJH64672.1| ribonuclease HI [Vibrio cholerae HE-45]
gi|408011635|gb|EKG49442.1| ribonuclease HI [Vibrio cholerae HC-50A1]
gi|408017687|gb|EKG55174.1| ribonuclease HI [Vibrio cholerae HC-52A1]
gi|408022830|gb|EKG60021.1| ribonuclease HI [Vibrio cholerae HC-56A1]
gi|408023091|gb|EKG60271.1| ribonuclease HI [Vibrio cholerae HC-55A1]
gi|408032096|gb|EKG68692.1| ribonuclease HI [Vibrio cholerae HC-57A1]
gi|408054268|gb|EKG89252.1| ribonuclease HI [Vibrio cholerae HC-51A1]
gi|408620457|gb|EKK93469.1| RNase H family protein [Vibrio cholerae HC-1A2]
gi|408629325|gb|EKL02024.1| RNase H family protein [Vibrio cholerae HC-41B1]
gi|408634951|gb|EKL07186.1| RNase H family protein [Vibrio cholerae HC-55C2]
gi|408640287|gb|EKL12083.1| RNase H family protein [Vibrio cholerae HC-59A1]
gi|408640634|gb|EKL12422.1| RNase H family protein [Vibrio cholerae HC-60A1]
gi|408656593|gb|EKL27687.1| RNase H family protein [Vibrio cholerae HE-40]
gi|408663638|gb|EKL34500.1| RNase H family protein [Vibrio cholerae HE-46]
gi|408852397|gb|EKL92225.1| ribonuclease HI [Vibrio cholerae HC-02C1]
gi|408856490|gb|EKL96185.1| ribonuclease HI [Vibrio cholerae HC-46B1]
gi|408859555|gb|EKL99212.1| ribonuclease HI [Vibrio cholerae HC-55B2]
gi|408863267|gb|EKM02757.1| ribonuclease HI [Vibrio cholerae HC-44C1]
gi|408866897|gb|EKM06268.1| ribonuclease HI [Vibrio cholerae HC-59B1]
gi|429227256|gb|EKY33304.1| Ribonuclease HI [Vibrio cholerae PS15]
gi|443453454|gb|ELT17277.1| ribonuclease HI [Vibrio cholerae HC-78A1]
Length = 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|419953829|ref|ZP_14469972.1| ribonuclease H [Pseudomonas stutzeri TS44]
gi|387969518|gb|EIK53800.1| ribonuclease H [Pseudomonas stutzeri TS44]
Length = 151
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G +Y G L G+ + TNN E+ AI AL +
Sbjct: 3 DELVEIYTDGACKGNPGPGGWGALLIYKGVKREL-WGGE--AQTTNNRMELMAAIRALAE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++++ + +W+P W+ GW+ A +PV+N + Q+L Q+ + +
Sbjct: 60 LKRPC--QVRLVTDSQYVMQGINDWLPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD +A
Sbjct: 117 VSWQWVRGHTGHPGNEQADLLA 138
>gi|326796076|ref|YP_004313896.1| ribonuclease H [Marinomonas mediterranea MMB-1]
gi|326546840|gb|ADZ92060.1| Ribonuclease H [Marinomonas mediterranea MMB-1]
Length = 147
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N +G G+G + FG++ G+ TNN E+ GAI LK
Sbjct: 4 VTIYTDGACKGNPGIG---GWGAWLTFGQHEKKMCGGEHD--TTNNRMELMGAIEGLKAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + + V + +DS ++ K + +W+ W+ GW+ A +PV+N++ Q L + Q V
Sbjct: 59 KESCV--VTLYTDSSYVQKGITQWLAGWKKKGWKTASKQPVKNQDLWQSLDSEC-QRHDV 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH GN AD++A
Sbjct: 116 TWKWVKGHAGIEGNEIADQLA 136
>gi|319762433|ref|YP_004126370.1| ribonuclease h [Alicycliphilus denitrificans BC]
gi|317116994|gb|ADU99482.1| ribonuclease H [Alicycliphilus denitrificans BC]
Length = 148
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N VV++TDGAC N G G+GV GE G++ TNN E+ I AL
Sbjct: 2 NQVVIYTDGACKGNPGPG---GWGVVLRSGELEKELFGGELG--TTNNRMELMAVIQALA 56
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIG 119
K +V + DSQ++ + + EW+ W+ GWR A G+PV+N E L EL H+ G
Sbjct: 57 ALKRPC--QVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHKAG 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
++W +V GH GN +AD +A
Sbjct: 115 H--RIEWHWVKGHAGDPGNERADALA 138
>gi|400286595|ref|ZP_10788627.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
gi|400288072|ref|ZP_10790104.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
Length = 533
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N V +TDGAC N G G+G + F + + ++ G T TNN E+ GAI AL
Sbjct: 25 NTTVAYTDGACKGNPGAG---GWGAHLIFSDGHTQDLYGG-TKETTNNRMELMGAIQALT 80
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ + + I +DS ++ K + EW+ W+ GW+ A KPV N++ Q+ L + Q
Sbjct: 81 HSPHEH--NLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKPVANQDLWQQ-LDALCQQR 137
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN KADE+A
Sbjct: 138 DVDWHWVKGHAGHAGNEKADELA 160
>gi|395231457|ref|ZP_10409746.1| ribonuclease H [Citrobacter sp. A1]
gi|424731314|ref|ZP_18159899.1| ribonuclease hi [Citrobacter sp. L17]
gi|394714760|gb|EJF20656.1| ribonuclease H [Citrobacter sp. A1]
gi|422894288|gb|EKU34102.1| ribonuclease hi [Citrobacter sp. L17]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +G + +K
Sbjct: 61 EQC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
[Psychrobacter arcticus 273-4]
gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
epsilon subunit [Psychrobacter arcticus 273-4]
Length = 527
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 8 VVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +TDGAC N G G+G + F + ++ G TNN E+ GAI AL
Sbjct: 28 VAYTDGACKGNPGAG---GWGAHLIFSDGRTQDLYGG-DKETTNNRMELMGAIQALTH-- 81
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S + + I +DS ++ K + EW+ W+ GW+ A KPV N ++L + L ++ Q V
Sbjct: 82 SPHEQNLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKPVAN-QDLWQRLDELCQHRDVD 140
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN KADE+A
Sbjct: 141 WHWVKGHAGHAGNEKADELA 160
>gi|291613977|ref|YP_003524134.1| ribonuclease H [Sideroxydans lithotrophicus ES-1]
gi|291584089|gb|ADE11747.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1]
Length = 154
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Query: 1 MDPDNHVV-VFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTGRVTNNNAEIQGAI 58
MD + VV +FTDGAC N +G G+G + L + G TNN E+ AI
Sbjct: 1 MDKMSDVVEIFTDGACKGNPGLG---GWGALLRVKGKELELCGG-EAHTTNNRMELLAAI 56
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K RV + +DS+++ + + EW+ W+ GW+ AD KPV+N E+L L +
Sbjct: 57 SALEALKRQC--RVRLHTDSKYVQQGISEWVHNWKLRGWKTADKKPVKN-EDLWRRLDTL 113
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W +V GH GN +AD +A
Sbjct: 114 AEQHHVEWVWVKGHAGHDGNERADALA 140
>gi|299066482|emb|CBJ37670.1| Ribonuclease H (RNase H) [Ralstonia solanacearum CMR15]
Length = 151
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G V G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVVAHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|229587082|ref|YP_002845583.1| ribonuclease H [Rickettsia africae ESF-5]
gi|228022132|gb|ACP53840.1| Ribonuclease H [Rickettsia africae ESF-5]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIVADKLA 140
>gi|430751202|ref|YP_007214110.1| ribonuclease HI [Thermobacillus composti KWC4]
gi|430735167|gb|AGA59112.1| ribonuclease HI [Thermobacillus composti KWC4]
Length = 148
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDGAC P G GA YG + E ++G TNN EI I ALKQ
Sbjct: 4 VTIYTDGACSGNPGPGGWGAVLFYGPHRKE-----ISGG-EPMTTNNRMEIVAVIEALKQ 57
Query: 64 AKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K V + SDS +++ C Q WM W NGWR + GKPV+N++ QEL + Q
Sbjct: 58 LKEPCA--VTVYSDSAYVVNCFRQNWMQGWLKNGWRNSKGKPVENQDLWQELW-SLMQRH 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMAR 146
V + V GH ++ N + DE+AR
Sbjct: 115 RVSYVKVKGHSDNEWNNRCDELAR 138
>gi|443311794|ref|ZP_21041418.1| ribonuclease HI [Synechocystis sp. PCC 7509]
gi|442778194|gb|ELR88463.1| ribonuclease HI [Synechocystis sp. PCC 7509]
Length = 298
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK-QAKSA 67
V+TDGAC N G G VY+ + + G + TNN E+Q AI AL ++
Sbjct: 10 VYTDGACTGNPGPGG-WGVVVYYTDKSVREFGGN-EKQTTNNRMEMQAAIAALTFLTETP 67
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
+ + + +DS+++IK V +W+ W+ GW+ A GKPV N Q+L + Q+ S V
Sbjct: 68 PTEPITLYTDSEYLIKGVTQWVKNWKKKGWKTATGKPVLN----QDLWENLDQLNSKLVL 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHAGNVGNERCDAIARAFA 147
>gi|378951535|ref|YP_005209023.1| ribonuclease HI [Pseudomonas fluorescens F113]
gi|359761549|gb|AEV63628.1| Ribonuclease HI [Pseudomonas fluorescens F113]
Length = 150
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNA-DLWKLLDEQVSRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|302187968|ref|ZP_07264641.1| ribonuclease H [Pseudomonas syringae pv. syringae 642]
Length = 150
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMANWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|319637706|ref|ZP_07992472.1| ribonuclease H [Neisseria mucosa C102]
gi|317400861|gb|EFV81516.1| ribonuclease H [Neisseria mucosa C102]
Length = 147
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I
Sbjct: 1 MTMDKPVYLYTDGACKGNPGAG---GWGVFMRYGTHEKELFGGEA--ETTNNRMELTAVI 55
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
LK K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L +
Sbjct: 56 EGLKSLKRRC--QVVICTDSQYVKNGMESWIYGWKKNGWKTAAKKPVKN-DDLWKELDSL 112
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q V+W +V GH N KADE+A A
Sbjct: 113 VQQHDVRWTWVKGHAGHPENEKADELANQGA 143
>gi|319942611|ref|ZP_08016919.1| ribonuclease H [Sutterella wadsworthensis 3_1_45B]
gi|319803790|gb|EFW00722.1| ribonuclease H [Sutterella wadsworthensis 3_1_45B]
Length = 158
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDGAC +N VG + V+ L +T TNN E+ I AL K
Sbjct: 12 IWTDGACKKNPGVGGWGAWLVWGKYTLELYGGSALT---TNNQMELTAVIRALSAVKRPC 68
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+ I DS ++ + W+ W+ NGWR AD KPV+N E QEL + Q + + W +
Sbjct: 69 --PIIIHLDSSYVKDGITRWIHGWKKNGWRTADKKPVKNGELWQELDRLVSQHQ-IDWRW 125
Query: 129 VPGHGNSHGNMKADEMA 145
V GH GN KAD +A
Sbjct: 126 VKGHAGDPGNEKADALA 142
>gi|222147802|ref|YP_002548759.1| ribonuclease H [Agrobacterium vitis S4]
gi|221734790|gb|ACM35753.1| ribonuclease H [Agrobacterium vitis S4]
Length = 154
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKDLCGGEAD--TTNNRMELLAAITALNT 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K+ V + +DS++++ + +W+ W+ NGW+ AD KPV+N E Q+ L Q
Sbjct: 58 LKTPC--EVDLHTDSKYVMDGISKWIFGWKKNGWKTADKKPVKNGELWQQ-LDAANQRHK 114
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
V W +V GH N +ADE+AR
Sbjct: 115 VTWHWVKGHAGHPENERADELAR 137
>gi|334123335|ref|ZP_08497361.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
gi|419960270|ref|ZP_14476313.1| ribonuclease H [Enterobacter cloacae subsp. cloacae GS1]
gi|295096913|emb|CBK86003.1| RNase HI [Enterobacter cloacae subsp. cloacae NCTC 9394]
gi|333390819|gb|EGK61948.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
gi|388604859|gb|EIM34086.1| ribonuclease H [Enterobacter cloacae subsp. cloacae GS1]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYRQHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ E +KW
Sbjct: 62 -HCD-VVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|260767800|ref|ZP_05876735.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|375130195|ref|YP_004992295.1| ribonuclease H [Vibrio furnissii NCTC 11218]
gi|260617309|gb|EEX42493.1| ribonuclease HI [Vibrio furnissii CIP 102972]
gi|315179369|gb|ADT86283.1| ribonuclease H [Vibrio furnissii NCTC 11218]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYGV K TNN E+ A+ ALK K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLAKGYRLTTNNRMEMMAAVVALKTLKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V+W
Sbjct: 62 PC--HVSLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDAETARHQ-VEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+AR AA
Sbjct: 119 HWVKGHAGHRENEMCDELARSAA 141
>gi|238650384|ref|YP_002916236.1| ribonuclease H [Rickettsia peacockii str. Rustic]
gi|238624482|gb|ACR47188.1| ribonuclease H [Rickettsia peacockii str. Rustic]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|50122262|ref|YP_051429.1| ribonuclease H [Pectobacterium atrosepticum SCRI1043]
gi|81827039|sp|Q6D1V7.1|RNH_ERWCT RecName: Full=Ribonuclease H; Short=RNase H
gi|49612788|emb|CAG76238.1| ribonuclease HI [Pectobacterium atrosepticum SCRI1043]
Length = 154
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAVLRYKQHEKALSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D + + +DSQ++ + + W+ W+ W+ AD KPV+N + + L I Q SV+W
Sbjct: 61 TDCD-IVLSTDSQYVRQGITSWIHNWKKRSWKTADKKPVKNVDLWKRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|398855437|ref|ZP_10611930.1| ribonuclease HI [Pseudomonas sp. GM80]
gi|398231456|gb|EJN17444.1| ribonuclease HI [Pseudomonas sp. GM80]
Length = 153
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L+
Sbjct: 6 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELLGAIRGLEAL 62
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + +EL Q+ + V
Sbjct: 63 KRPC--EVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKELDEQVNR-HKV 119
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 120 SWKWVRGHIGHHGNERADQLA 140
>gi|238883043|gb|EEQ46681.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 277
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 109 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 168
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
LK Q+ A + I SDS++ I+ V EW W NGW+ + G+ V NK+ +QE
Sbjct: 169 LKNIHNDLQSGKA-TGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQET 227
Query: 115 L---------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +Q ++++ V GH + GN AD +A A
Sbjct: 228 VALKNSINKTYQDKNWGNLEFVHVKGHAGNPGNEAADRLANQGA 271
>gi|428223101|ref|YP_007107271.1| ribonuclease HI [Synechococcus sp. PCC 7502]
gi|427996441|gb|AFY75136.1| ribonuclease HI [Synechococcus sp. PCC 7502]
Length = 159
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+P ++TDGAC N G G+GV F + + + G+ TNN E++GAI
Sbjct: 12 NPTKITTIYTDGACSGNPGAG---GWGVVINFSDGSRRELRGR-KAFTTNNQMELEGAIA 67
Query: 60 ALKQAKSANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
L+ + + D+ V + +DS+++I + +W+ W+ N WR A +PV+N +EL ++L Q+
Sbjct: 68 GLRFWQELDPDQSVKLFTDSKYVIDGITKWIKGWKQNNWRTASKQPVKN-QELWQILDQL 126
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARD 147
+ V W +V GH N + D +ARD
Sbjct: 127 NSAK-VSWHWVQGHSGDQDNERCDAIARD 154
>gi|352101208|ref|ZP_08958631.1| ribonuclease H [Halomonas sp. HAL1]
gi|350600692|gb|EHA16753.1| ribonuclease H [Halomonas sp. HAL1]
Length = 156
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDGAC N G G+GV TNN E+ AI AL+ +
Sbjct: 12 VTVYTDGACRGNPGPG---GWGVVLASGQHEKTLKGYESDTTNNRMELMAAIMALRTLNT 68
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W GW+ A +PV+N E L + LH+ Q +++W
Sbjct: 69 PC--EVALWTDSQYVRQGITQWIHNWLKRGWKTAAKQPVKNAE-LWKTLHEETQRHTIEW 125
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH GN +AD +A +A
Sbjct: 126 HWVKGHSGHPGNERADALANEA 147
>gi|443477354|ref|ZP_21067208.1| Ribonuclease H [Pseudanabaena biceps PCC 7429]
gi|443017550|gb|ELS31967.1| Ribonuclease H [Pseudanabaena biceps PCC 7429]
Length = 312
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P + + TDGAC +N G G+GV +F + + + G + TNN E+QGAI A
Sbjct: 165 PSKIISIHTDGACSKNPGPG---GWGVVIHFDDGSTKEIGGGIR-ETTNNQMELQGAIAA 220
Query: 61 LK-QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
L+ A V + +DS++++ + +W+ W+ NGW+ D KPV+N QEL Q+
Sbjct: 221 LEFLATHKQSTPVDLYTDSKYVLDGITKWIKGWKKNGWKTKDNKPVKN----QELWQQLD 276
Query: 120 QMES--VKWEFVPGHGNSHGNMKADEMAR 146
+ S ++W +V GH N + D +AR
Sbjct: 277 PLNSSNIRWHWVEGHSGDPDNERCDAIAR 305
>gi|407773092|ref|ZP_11120393.1| ribonuclease H [Thalassospira profundimaris WP0211]
gi|407283556|gb|EKF09084.1| ribonuclease H [Thalassospira profundimaris WP0211]
Length = 149
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
DN V ++TDGAC N G + G ++ T TNN E+ AI AL+
Sbjct: 8 DNRVEIYTDGACSGNPGPGGWGAILRFKGVEKEMSGGDPET---TNNRMEMMAAISALEA 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + + I +DS ++ + +W+ WQ GW+ AD KPV+N E Q LL + +
Sbjct: 65 LKRPCV--IDIYTDSSYVRDGITKWIFGWQKRGWKTADKKPVKNVELWQRLLQAL-EPHK 121
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
V+W +V GH N + DE+AR A
Sbjct: 122 VEWHWVKGHAGHPENERCDELARQA 146
>gi|398867191|ref|ZP_10622658.1| ribonuclease HI [Pseudomonas sp. GM78]
gi|398237789|gb|EJN23533.1| ribonuclease HI [Pseudomonas sp. GM78]
Length = 150
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|380510637|ref|ZP_09854044.1| ribonuclease H [Xanthomonas sacchari NCPPB 4393]
Length = 152
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G A Y G VAG TNN E+ AI AL+
Sbjct: 4 VDIHTDGACLGNPGPGGWAALLRYKGLER--EVAG-AEAHTTNNRMELMAAIMALETLNE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ +L E LH Q ++ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRQWKTAGGDPVKNR-DLWERLHAAAQRHTIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D++AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDQLARNQA 140
>gi|403512261|ref|YP_006643899.1| RNase H family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402800686|gb|AFR08096.1| RNase H family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 143
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+V++TDGAC N G G+GV+ +GE+ G+ + TNN E+ AI AL+
Sbjct: 1 MVIYTDGACSGNPGPG---GWGVWLRYGEHERELYGGEA--QTTNNRMELMAAIKALESL 55
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
V + +DS ++ + W+ W+ GWR AD KPV+N +L + L + V
Sbjct: 56 TRRVP--VVLHTDSSYVRNGITSWVHGWKRRGWRTADKKPVKNV-DLWQRLEALAAEHEV 112
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
+W++V GH GN ADE+AR
Sbjct: 113 EWKWVRGHSGDEGNEHADELAR 134
>gi|398994394|ref|ZP_10697296.1| ribonuclease HI [Pseudomonas sp. GM21]
gi|398132266|gb|EJM21546.1| ribonuclease HI [Pseudomonas sp. GM21]
Length = 150
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|261492155|ref|ZP_05988726.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495749|ref|ZP_05992191.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308604|gb|EEY09865.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312228|gb|EEY13360.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 164
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 15 VEIFTDGSCLGNPGKG---GIGILLRYNGYEKTVSKGYFQTTNNRMELRAVIEALAMLKE 71
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M +Q+W+ W+ N W+ +D KPV+NK +L L Q Q ++W
Sbjct: 72 PC--KVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNK-DLWVALDQEIQRHQIEW 128
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 129 SWVKGHSGHRENEICDELAKQGA 151
>gi|398966185|ref|ZP_10681408.1| ribonuclease HI [Pseudomonas sp. GM30]
gi|398978520|ref|ZP_10687843.1| ribonuclease HI [Pseudomonas sp. GM25]
gi|424922770|ref|ZP_18346131.1| Ribonuclease HI [Pseudomonas fluorescens R124]
gi|398136920|gb|EJM25994.1| ribonuclease HI [Pseudomonas sp. GM25]
gi|398146433|gb|EJM35182.1| ribonuclease HI [Pseudomonas sp. GM30]
gi|404303930|gb|EJZ57892.1| Ribonuclease HI [Pseudomonas fluorescens R124]
Length = 153
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L+
Sbjct: 6 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELLGAIRGLEAL 62
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + +EL Q+ + V
Sbjct: 63 KRPC--EVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKELDEQVNR-HKV 119
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 120 TWKWVRGHIGHHGNERADQLA 140
>gi|398842950|ref|ZP_10600117.1| ribonuclease HI [Pseudomonas sp. GM102]
gi|398861055|ref|ZP_10616693.1| ribonuclease HI [Pseudomonas sp. GM79]
gi|398907010|ref|ZP_10653726.1| ribonuclease HI [Pseudomonas sp. GM50]
gi|399001211|ref|ZP_10703929.1| ribonuclease HI [Pseudomonas sp. GM18]
gi|423094899|ref|ZP_17082695.1| ribonuclease HI [Pseudomonas fluorescens Q2-87]
gi|397886834|gb|EJL03317.1| ribonuclease HI [Pseudomonas fluorescens Q2-87]
gi|398104732|gb|EJL94858.1| ribonuclease HI [Pseudomonas sp. GM102]
gi|398128404|gb|EJM17795.1| ribonuclease HI [Pseudomonas sp. GM18]
gi|398172176|gb|EJM60051.1| ribonuclease HI [Pseudomonas sp. GM50]
gi|398233857|gb|EJN19765.1| ribonuclease HI [Pseudomonas sp. GM79]
Length = 150
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|83747774|ref|ZP_00944808.1| Hypothetical Protein RRSL_02196 [Ralstonia solanacearum UW551]
gi|207742894|ref|YP_002259286.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum IPO1609]
gi|421897986|ref|ZP_16328353.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum MolK2]
gi|83725546|gb|EAP72690.1| Hypothetical Protein RRSL_02196 [Ralstonia solanacearum UW551]
gi|206589192|emb|CAQ36154.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum MolK2]
gi|206594289|emb|CAQ61216.1| ribonuclease h (rnase h) protein [Ralstonia solanacearum IPO1609]
Length = 151
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G + G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLISGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVVAHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|15642232|ref|NP_231865.1| ribonuclease H [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121586236|ref|ZP_01676026.1| ribonuclease HI [Vibrio cholerae 2740-80]
gi|121726567|ref|ZP_01679816.1| ribonuclease HI [Vibrio cholerae V52]
gi|147675243|ref|YP_001217750.1| ribonuclease H [Vibrio cholerae O395]
gi|153213821|ref|ZP_01949029.1| ribonuclease HI [Vibrio cholerae 1587]
gi|153817118|ref|ZP_01969785.1| ribonuclease HI [Vibrio cholerae NCTC 8457]
gi|153820802|ref|ZP_01973469.1| ribonuclease HI [Vibrio cholerae B33]
gi|227082358|ref|YP_002810909.1| ribonuclease H [Vibrio cholerae M66-2]
gi|227118680|ref|YP_002820576.1| ribonuclease HI [Vibrio cholerae O395]
gi|229507691|ref|ZP_04397196.1| ribonuclease HI [Vibrio cholerae BX 330286]
gi|229512114|ref|ZP_04401593.1| ribonuclease HI [Vibrio cholerae B33]
gi|229519249|ref|ZP_04408692.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229607195|ref|YP_002877843.1| ribonuclease H [Vibrio cholerae MJ-1236]
gi|254849365|ref|ZP_05238715.1| ribonuclease HI [Vibrio cholerae MO10]
gi|255747068|ref|ZP_05421013.1| ribonuclease HI [Vibrio cholera CIRS 101]
gi|262161387|ref|ZP_06030497.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
gi|262167743|ref|ZP_06035445.1| ribonuclease HI [Vibrio cholerae RC27]
gi|298500391|ref|ZP_07010196.1| ribonuclease HI [Vibrio cholerae MAK 757]
gi|360036111|ref|YP_004937874.1| ribonuclease H [Vibrio cholerae O1 str. 2010EL-1786]
gi|379742039|ref|YP_005334008.1| ribonuclease H [Vibrio cholerae IEC224]
gi|417817999|ref|ZP_12464628.1| ribonuclease HI [Vibrio cholerae HCUF01]
gi|418335244|ref|ZP_12944155.1| ribonuclease HI [Vibrio cholerae HC-06A1]
gi|418338853|ref|ZP_12947747.1| ribonuclease HI [Vibrio cholerae HC-23A1]
gi|418346777|ref|ZP_12951535.1| ribonuclease HI [Vibrio cholerae HC-28A1]
gi|418350539|ref|ZP_12955270.1| ribonuclease HI [Vibrio cholerae HC-43A1]
gi|418355629|ref|ZP_12958348.1| ribonuclease HI [Vibrio cholerae HC-61A1]
gi|419827193|ref|ZP_14350692.1| RNase H family protein [Vibrio cholerae CP1033(6)]
gi|421317857|ref|ZP_15768425.1| ribonuclease HI [Vibrio cholerae CP1032(5)]
gi|421321991|ref|ZP_15772544.1| ribonuclease HI [Vibrio cholerae CP1038(11)]
gi|421325793|ref|ZP_15776317.1| ribonuclease HI [Vibrio cholerae CP1041(14)]
gi|421333407|ref|ZP_15783884.1| ribonuclease HI [Vibrio cholerae CP1046(19)]
gi|421336949|ref|ZP_15787410.1| ribonuclease HI [Vibrio cholerae CP1048(21)]
gi|421340377|ref|ZP_15790809.1| ribonuclease HI [Vibrio cholerae HC-20A2]
gi|421348180|ref|ZP_15798557.1| ribonuclease HI [Vibrio cholerae HC-46A1]
gi|422897332|ref|ZP_16934776.1| ribonuclease HI [Vibrio cholerae HC-40A1]
gi|422903530|ref|ZP_16938500.1| ribonuclease HI [Vibrio cholerae HC-48A1]
gi|422907415|ref|ZP_16942213.1| ribonuclease HI [Vibrio cholerae HC-70A1]
gi|422914259|ref|ZP_16948764.1| ribonuclease HI [Vibrio cholerae HFU-02]
gi|422926463|ref|ZP_16959476.1| ribonuclease HI [Vibrio cholerae HC-38A1]
gi|423145785|ref|ZP_17133379.1| ribonuclease HI [Vibrio cholerae HC-19A1]
gi|423150461|ref|ZP_17137775.1| ribonuclease HI [Vibrio cholerae HC-21A1]
gi|423154280|ref|ZP_17141461.1| ribonuclease HI [Vibrio cholerae HC-22A1]
gi|423157363|ref|ZP_17144456.1| ribonuclease HI [Vibrio cholerae HC-32A1]
gi|423160934|ref|ZP_17147874.1| ribonuclease HI [Vibrio cholerae HC-33A2]
gi|423165761|ref|ZP_17152485.1| ribonuclease HI [Vibrio cholerae HC-48B2]
gi|423731781|ref|ZP_17705084.1| RNase H family protein [Vibrio cholerae HC-17A1]
gi|423769066|ref|ZP_17713204.1| RNase H family protein [Vibrio cholerae HC-50A2]
gi|423895928|ref|ZP_17727407.1| RNase H family protein [Vibrio cholerae HC-62A1]
gi|423931460|ref|ZP_17731800.1| RNase H family protein [Vibrio cholerae HC-77A1]
gi|424003213|ref|ZP_17746288.1| ribonuclease HI [Vibrio cholerae HC-17A2]
gi|424007004|ref|ZP_17749974.1| ribonuclease HI [Vibrio cholerae HC-37A1]
gi|424024984|ref|ZP_17764634.1| ribonuclease HI [Vibrio cholerae HC-62B1]
gi|424027870|ref|ZP_17767472.1| ribonuclease HI [Vibrio cholerae HC-69A1]
gi|424587150|ref|ZP_18026728.1| ribonuclease HI [Vibrio cholerae CP1030(3)]
gi|424591941|ref|ZP_18031365.1| ribonuclease HI [Vibrio cholerae CP1037(10)]
gi|424595801|ref|ZP_18035120.1| ribonuclease HI [Vibrio cholerae CP1040(13)]
gi|424599715|ref|ZP_18038893.1| ribonuclease HI [Vibrio Cholerae CP1044(17)]
gi|424602476|ref|ZP_18041616.1| ribonuclease HI [Vibrio cholerae CP1047(20)]
gi|424607408|ref|ZP_18046349.1| ribonuclease HI [Vibrio cholerae CP1050(23)]
gi|424611227|ref|ZP_18050066.1| ribonuclease HI [Vibrio cholerae HC-39A1]
gi|424618016|ref|ZP_18056687.1| ribonuclease HI [Vibrio cholerae HC-42A1]
gi|424622799|ref|ZP_18061304.1| ribonuclease HI [Vibrio cholerae HC-47A1]
gi|424645763|ref|ZP_18083498.1| ribonuclease HI [Vibrio cholerae HC-56A2]
gi|424653532|ref|ZP_18090912.1| ribonuclease HI [Vibrio cholerae HC-57A2]
gi|424657353|ref|ZP_18094638.1| ribonuclease HI [Vibrio cholerae HC-81A2]
gi|440710474|ref|ZP_20891122.1| ribonuclease HI [Vibrio cholerae 4260B]
gi|443504581|ref|ZP_21071537.1| ribonuclease HI [Vibrio cholerae HC-64A1]
gi|443508482|ref|ZP_21075243.1| ribonuclease HI [Vibrio cholerae HC-65A1]
gi|443512326|ref|ZP_21078961.1| ribonuclease HI [Vibrio cholerae HC-67A1]
gi|443515880|ref|ZP_21082390.1| ribonuclease HI [Vibrio cholerae HC-68A1]
gi|443519674|ref|ZP_21086067.1| ribonuclease HI [Vibrio cholerae HC-71A1]
gi|443524565|ref|ZP_21090775.1| ribonuclease HI [Vibrio cholerae HC-72A2]
gi|443532159|ref|ZP_21098173.1| ribonuclease HI [Vibrio cholerae HC-7A1]
gi|443535967|ref|ZP_21101838.1| ribonuclease HI [Vibrio cholerae HC-80A1]
gi|443539500|ref|ZP_21105354.1| ribonuclease HI [Vibrio cholerae HC-81A1]
gi|449055308|ref|ZP_21733976.1| Ribonuclease HI [Vibrio cholerae O1 str. Inaba G4222]
gi|21362893|sp|Q9KPX8.1|RNH_VIBCH RecName: Full=Ribonuclease HI; Short=RNase HI
gi|189043720|sp|A5F633.1|RNH_VIBC3 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808029|sp|C3LPN8.1|RNH_VIBCM RecName: Full=Ribonuclease H; Short=RNase H
gi|9656793|gb|AAF95378.1| ribonuclease HI [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121549502|gb|EAX59528.1| ribonuclease HI [Vibrio cholerae 2740-80]
gi|121631020|gb|EAX63399.1| ribonuclease HI [Vibrio cholerae V52]
gi|124115745|gb|EAY34565.1| ribonuclease HI [Vibrio cholerae 1587]
gi|126512386|gb|EAZ74980.1| ribonuclease HI [Vibrio cholerae NCTC 8457]
gi|126521594|gb|EAZ78817.1| ribonuclease HI [Vibrio cholerae B33]
gi|146317126|gb|ABQ21665.1| ribonuclease HI [Vibrio cholerae O395]
gi|227010246|gb|ACP06458.1| ribonuclease HI [Vibrio cholerae M66-2]
gi|227014130|gb|ACP10340.1| ribonuclease HI [Vibrio cholerae O395]
gi|229343938|gb|EEO08913.1| ribonuclease HI [Vibrio cholerae RC9]
gi|229352079|gb|EEO17020.1| ribonuclease HI [Vibrio cholerae B33]
gi|229355196|gb|EEO20117.1| ribonuclease HI [Vibrio cholerae BX 330286]
gi|229369850|gb|ACQ60273.1| ribonuclease HI [Vibrio cholerae MJ-1236]
gi|254845070|gb|EET23484.1| ribonuclease HI [Vibrio cholerae MO10]
gi|255735470|gb|EET90870.1| ribonuclease HI [Vibrio cholera CIRS 101]
gi|262023808|gb|EEY42507.1| ribonuclease HI [Vibrio cholerae RC27]
gi|262028698|gb|EEY47352.1| ribonuclease HI [Vibrio cholerae INDRE 91/1]
gi|297541084|gb|EFH77138.1| ribonuclease HI [Vibrio cholerae MAK 757]
gi|340037722|gb|EGQ98697.1| ribonuclease HI [Vibrio cholerae HCUF01]
gi|341620470|gb|EGS46241.1| ribonuclease HI [Vibrio cholerae HC-48A1]
gi|341620606|gb|EGS46373.1| ribonuclease HI [Vibrio cholerae HC-70A1]
gi|341621215|gb|EGS46962.1| ribonuclease HI [Vibrio cholerae HC-40A1]
gi|341636501|gb|EGS61196.1| ribonuclease HI [Vibrio cholerae HFU-02]
gi|341645853|gb|EGS69977.1| ribonuclease HI [Vibrio cholerae HC-38A1]
gi|356416620|gb|EHH70245.1| ribonuclease HI [Vibrio cholerae HC-06A1]
gi|356417783|gb|EHH71396.1| ribonuclease HI [Vibrio cholerae HC-21A1]
gi|356422623|gb|EHH76097.1| ribonuclease HI [Vibrio cholerae HC-19A1]
gi|356427972|gb|EHH81203.1| ribonuclease HI [Vibrio cholerae HC-22A1]
gi|356430495|gb|EHH83704.1| ribonuclease HI [Vibrio cholerae HC-23A1]
gi|356431761|gb|EHH84961.1| ribonuclease HI [Vibrio cholerae HC-28A1]
gi|356439253|gb|EHH92240.1| ribonuclease HI [Vibrio cholerae HC-32A1]
gi|356444211|gb|EHH97023.1| ribonuclease HI [Vibrio cholerae HC-33A2]
gi|356445035|gb|EHH97844.1| ribonuclease HI [Vibrio cholerae HC-43A1]
gi|356450262|gb|EHI02992.1| ribonuclease HI [Vibrio cholerae HC-48B2]
gi|356452127|gb|EHI04806.1| ribonuclease HI [Vibrio cholerae HC-61A1]
gi|356647265|gb|AET27320.1| ribonuclease H [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795549|gb|AFC59020.1| ribonuclease H [Vibrio cholerae IEC224]
gi|395916115|gb|EJH26945.1| ribonuclease HI [Vibrio cholerae CP1032(5)]
gi|395917631|gb|EJH28459.1| ribonuclease HI [Vibrio cholerae CP1041(14)]
gi|395918985|gb|EJH29809.1| ribonuclease HI [Vibrio cholerae CP1038(11)]
gi|395928809|gb|EJH39562.1| ribonuclease HI [Vibrio cholerae CP1046(19)]
gi|395932048|gb|EJH42792.1| ribonuclease HI [Vibrio cholerae CP1048(21)]
gi|395939660|gb|EJH50342.1| ribonuclease HI [Vibrio cholerae HC-20A2]
gi|395942759|gb|EJH53435.1| ribonuclease HI [Vibrio cholerae HC-46A1]
gi|395958301|gb|EJH68797.1| ribonuclease HI [Vibrio cholerae HC-56A2]
gi|395958822|gb|EJH69286.1| ribonuclease HI [Vibrio cholerae HC-57A2]
gi|395961492|gb|EJH71816.1| ribonuclease HI [Vibrio cholerae HC-42A1]
gi|395970447|gb|EJH80212.1| ribonuclease HI [Vibrio cholerae HC-47A1]
gi|395972498|gb|EJH82088.1| ribonuclease HI [Vibrio cholerae CP1030(3)]
gi|395975154|gb|EJH84651.1| ribonuclease HI [Vibrio cholerae CP1047(20)]
gi|408006578|gb|EKG44716.1| ribonuclease HI [Vibrio cholerae HC-39A1]
gi|408030084|gb|EKG66761.1| ribonuclease HI [Vibrio cholerae CP1037(10)]
gi|408031359|gb|EKG67989.1| ribonuclease HI [Vibrio cholerae CP1040(13)]
gi|408041072|gb|EKG77212.1| ribonuclease HI [Vibrio Cholerae CP1044(17)]
gi|408042515|gb|EKG78564.1| ribonuclease HI [Vibrio cholerae CP1050(23)]
gi|408052474|gb|EKG87513.1| ribonuclease HI [Vibrio cholerae HC-81A2]
gi|408607983|gb|EKK81386.1| RNase H family protein [Vibrio cholerae CP1033(6)]
gi|408622824|gb|EKK95791.1| RNase H family protein [Vibrio cholerae HC-17A1]
gi|408633343|gb|EKL05704.1| RNase H family protein [Vibrio cholerae HC-50A2]
gi|408653687|gb|EKL24842.1| RNase H family protein [Vibrio cholerae HC-77A1]
gi|408654630|gb|EKL25765.1| RNase H family protein [Vibrio cholerae HC-62A1]
gi|408844858|gb|EKL84981.1| ribonuclease HI [Vibrio cholerae HC-37A1]
gi|408845747|gb|EKL85862.1| ribonuclease HI [Vibrio cholerae HC-17A2]
gi|408869901|gb|EKM09188.1| ribonuclease HI [Vibrio cholerae HC-62B1]
gi|408878493|gb|EKM17494.1| ribonuclease HI [Vibrio cholerae HC-69A1]
gi|439973803|gb|ELP50007.1| ribonuclease HI [Vibrio cholerae 4260B]
gi|443431052|gb|ELS73606.1| ribonuclease HI [Vibrio cholerae HC-64A1]
gi|443434890|gb|ELS81036.1| ribonuclease HI [Vibrio cholerae HC-65A1]
gi|443438714|gb|ELS88432.1| ribonuclease HI [Vibrio cholerae HC-67A1]
gi|443442817|gb|ELS96120.1| ribonuclease HI [Vibrio cholerae HC-68A1]
gi|443446673|gb|ELT03332.1| ribonuclease HI [Vibrio cholerae HC-71A1]
gi|443449423|gb|ELT09717.1| ribonuclease HI [Vibrio cholerae HC-72A2]
gi|443457549|gb|ELT24946.1| ribonuclease HI [Vibrio cholerae HC-7A1]
gi|443460857|gb|ELT31937.1| ribonuclease HI [Vibrio cholerae HC-80A1]
gi|443465600|gb|ELT40260.1| ribonuclease HI [Vibrio cholerae HC-81A1]
gi|448265350|gb|EMB02585.1| Ribonuclease HI [Vibrio cholerae O1 str. Inaba G4222]
Length = 156
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYG+ + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGIVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|18655792|pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655793|pdb|1JL2|B Chain B, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655794|pdb|1JL2|C Chain C, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
gi|18655795|pdb|1JL2|D Chain D, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
Length = 156
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 9/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+ N G Y G + AG R TNN E++ AI LK K
Sbjct: 5 VEIFTDGSALGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELKAAIEGLKALKE 61
Query: 67 -ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
A +D + +DS ++ K E W+ W+ GWR A+GKPV+N++ + LL + V
Sbjct: 62 PAEVD---LYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRV 117
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
++ FV GH N +ADE+AR AA
Sbjct: 118 RFHFVKGHAGHPENERADELARAAA 142
>gi|294637714|ref|ZP_06715991.1| ribonuclease HI [Edwardsiella tarda ATCC 23685]
gi|451965867|ref|ZP_21919122.1| ribonuclease HI [Edwardsiella tarda NBRC 105688]
gi|291089144|gb|EFE21705.1| ribonuclease HI [Edwardsiella tarda ATCC 23685]
gi|451315116|dbj|GAC64484.1| ribonuclease HI [Edwardsiella tarda NBRC 105688]
Length = 156
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ +T TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRQHEKALSAGYHLT---TNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ++ + + +W+ W+ GW+ AD KPV+N +L + L Q Q V+W
Sbjct: 62 DC--QVKLYSDSQYVRQGITQWIHGWKRRGWKTADKKPVKNV-DLWQRLDQAIQAHQVEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+V GH N + DE+AR AAG
Sbjct: 119 IWVKGHAGHPENERCDELARQAAG 142
>gi|398876769|ref|ZP_10631922.1| ribonuclease HI [Pseudomonas sp. GM67]
gi|398883833|ref|ZP_10638781.1| ribonuclease HI [Pseudomonas sp. GM60]
gi|398195875|gb|EJM82900.1| ribonuclease HI [Pseudomonas sp. GM60]
gi|398203917|gb|EJM90730.1| ribonuclease HI [Pseudomonas sp. GM67]
Length = 150
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|398986023|ref|ZP_10691345.1| ribonuclease HI [Pseudomonas sp. GM24]
gi|399012171|ref|ZP_10714497.1| ribonuclease HI [Pseudomonas sp. GM16]
gi|398116278|gb|EJM06045.1| ribonuclease HI [Pseudomonas sp. GM16]
gi|398152949|gb|EJM41458.1| ribonuclease HI [Pseudomonas sp. GM24]
Length = 156
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G V G L G+ TNN E+ GAI L+ K
Sbjct: 11 VELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELLGAIRGLEALKR 67
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ+++K + EWM W+ GW+ A +PV+N + +EL Q+ + V W
Sbjct: 68 PC--EVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKELDEQVNR-HKVTW 124
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH HGN +AD++A
Sbjct: 125 KWVRGHIGHHGNERADQLA 143
>gi|294666554|ref|ZP_06731795.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603698|gb|EFF47108.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 150
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYHGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q + W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|402703115|ref|ZP_10851094.1| ribonuclease H [Rickettsia helvetica C9P9]
Length = 152
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 2 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEIFGYELDTTNNRMEIMAALEALRI 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 59 LKKSCNVE---IYTDSKYLQQGITAWIHNWVKNNWCKSNNEPVKNADLWQKLYAELSK-H 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 115 TIIWKWVKGHANNSGNIAADKLA 137
>gi|254361532|ref|ZP_04977670.1| ribonuclease H [Mannheimia haemolytica PHL213]
gi|452744973|ref|ZP_21944812.1| ribonuclease H [Mannheimia haemolytica serotype 6 str. H23]
gi|153093050|gb|EDN74066.1| ribonuclease H [Mannheimia haemolytica PHL213]
gi|452087028|gb|EME03412.1| ribonuclease H [Mannheimia haemolytica serotype 6 str. H23]
Length = 154
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 5 VEIFTDGSCLGNPGKG---GIGILLRYNGYEKTVSKGYFQTTNNRMELRAVIEALAMLKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M +Q+W+ W+ N W+ +D KPV+NK +L L Q Q ++W
Sbjct: 62 PC--KVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNK-DLWVALDQEIQRHQIEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 119 SWVKGHSGHRENEICDELAKQGA 141
>gi|87199107|ref|YP_496364.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444]
gi|123749889|sp|Q2G9E3.1|RNH_NOVAD RecName: Full=Ribonuclease H; Short=RNase H
gi|87134788|gb|ABD25530.1| RNase HI [Novosphingobium aromaticivorans DSM 12444]
Length = 143
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDGAC N G G+G TNN E+ AI AL+ K
Sbjct: 3 HVEIFTDGACKGNPGKG---GWGALLRMGEHEKEMAGSEKETTNNRMELMAAIRALEALK 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + +DS++++ + +W+ WQ GW+ AD KPV+N E+L L + V+
Sbjct: 60 QPC--RVTLHTDSKYVLDGITKWIFGWQKKGWKTADNKPVKN-EDLWRALVDAVRPHKVE 116
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N + D++A DAA
Sbjct: 117 WVWVKGHDGHPENERVDKLASDAA 140
>gi|421597109|ref|ZP_16040787.1| ribonuclease H [Bradyrhizobium sp. CCGE-LA001]
gi|404270780|gb|EJZ34782.1| ribonuclease H [Bradyrhizobium sp. CCGE-LA001]
Length = 154
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 7 VTIYTDGACSGNPGPG---GWGAILKFGDREKELNGGQP--HTTNNQMELMAAISALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + Q E +
Sbjct: 62 KRPCT--VDLYTDSQYVRQGITGWIFGWKRNGWRTADKKPVKNVELWQRLDAALKQHE-I 118
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
+W +V GH N +AD++ARD
Sbjct: 119 RWHWVKGHAGHPENERADQLARD 141
>gi|13476236|ref|NP_107806.1| ribonuclease H [Mesorhizobium loti MAFF303099]
gi|22096083|sp|Q985W1.1|RNH_RHILO RecName: Full=Ribonuclease H; Short=RNase H
gi|14026996|dbj|BAB53592.1| ribonuclease H [Mesorhizobium loti MAFF303099]
Length = 177
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G G+G N TNN E+ AI AL K
Sbjct: 4 QVEIFTDGACSGNPGPG---GWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L + + V
Sbjct: 61 EPCT--VELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNG-ELWQALDEANRRHKVT 117
Query: 126 WEFVPGHGNSHGNMKADEMARD 147
W +V GH N +ADE+AR+
Sbjct: 118 WNWVKGHAGHTENERADELARE 139
>gi|67458572|ref|YP_246196.1| ribonuclease H [Rickettsia felis URRWXCal2]
gi|75536962|sp|Q4UN27.1|RNH_RICFE RecName: Full=Ribonuclease H; Short=RNase H
gi|67004105|gb|AAY61031.1| Ribonuclease H [Rickettsia felis URRWXCal2]
Length = 152
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 2 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEIFGYELDTTNNRMEITAALEALRI 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 59 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 115 TIIWKWVKGHANNSGNIAADKLA 137
>gi|300703803|ref|YP_003745405.1| ribonuclease H [Ralstonia solanacearum CFBP2957]
gi|299071466|emb|CBJ42786.1| Ribonuclease H (RNase H) [Ralstonia solanacearum CFBP2957]
Length = 151
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G + G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLISGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVVAHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|448240630|ref|YP_007404683.1| ribonuclease HI [Serratia marcescens WW4]
gi|445210994|gb|AGE16664.1| ribonuclease HI [Serratia marcescens WW4]
gi|453066027|gb|EMF06983.1| ribonuclease H [Serratia marcescens VGH107]
Length = 155
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYG + TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGAILRYKQTEKTFSEGFRLTTNNRMEMMAAIVALEALT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + W+ W+ GW+ AD KPV+N +L + L Q Q VK
Sbjct: 61 VPCA--VTLSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNV-DLWQRLDQAIQRHEVK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +AR+AAG
Sbjct: 118 WEWVKGHAGHPENERCDVLAREAAG 142
>gi|398940954|ref|ZP_10669562.1| ribonuclease HI [Pseudomonas sp. GM41(2012)]
gi|407364620|ref|ZP_11111152.1| ribonuclease H [Pseudomonas mandelii JR-1]
gi|398162198|gb|EJM50403.1| ribonuclease HI [Pseudomonas sp. GM41(2012)]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGIEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRSC--DVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|160871674|ref|ZP_02061806.1| ribonuclease HI [Rickettsiella grylli]
gi|159120473|gb|EDP45811.1| ribonuclease HI [Rickettsiella grylli]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ +FTDGAC N GA A + G+ L+ T TNN E+ AI AL K
Sbjct: 7 IEIFTDGACRGNPGPGAWAALLRFQGKEKTLSGTEAST---TNNRMELMAAIQALIAVKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
R+ + +DS+++ K + EW+P+W+ W A+ KPV+N + +EL Q + + W
Sbjct: 64 PC--RIILSTDSKYVQKGITEWLPQWKRRAWLTANKKPVKNSDLWKELALQ-AERHQISW 120
Query: 127 EFVPGHGNSHGNMKADEMA 145
E+V GH N + D +A
Sbjct: 121 EWVKGHSGHPENDRVDYLA 139
>gi|325914918|ref|ZP_08177250.1| RNase HI [Xanthomonas vesicatoria ATCC 35937]
gi|325538811|gb|EGD10475.1| RNase HI [Xanthomonas vesicatoria ATCC 35937]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIKALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWM W GW+ A G PV+N+ EL E LH Q S+ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMSGWVRRGWKTAGGDPVKNR-ELWERLHAATQRHSIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|359421448|ref|ZP_09213374.1| ribonuclease H [Gordonia araii NBRC 100433]
gi|358242707|dbj|GAB11443.1| ribonuclease H [Gordonia araii NBRC 100433]
Length = 159
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 73/148 (49%), Gaps = 6/148 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D ++ V + TDGAC N G Y G ++ A T TNN E+ GAI L
Sbjct: 11 DGEDIVEMSTDGACLGNPGPGGWGAVLRYRGHEKRISGAAPDT---TNNQMELTGAIEGL 67
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A V + +DS ++ + +W+ WQ NGWR AD KPV+N E Q L+ + +
Sbjct: 68 --AALTKPSTVVLYTDSSYVRNGITKWVTGWQRNGWRTADKKPVKNLELWQRLIEEESR- 124
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
V W +V GH + N ADE+A AA
Sbjct: 125 HRVTWRWVKGHNGDYYNEIADELATSAA 152
>gi|294677462|ref|YP_003578077.1| ribonuclease H [Rhodobacter capsulatus SB 1003]
gi|294476282|gb|ADE85670.1| ribonuclease H-1 [Rhodobacter capsulatus SB 1003]
Length = 180
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQ 63
++V+TDG+C N G A + + + A + G + TNN E++ A+ ALK
Sbjct: 21 IIVYTDGSCQPNPGRGGYAAILCRYRDGREIKRA-HIYGCKQQTTNNEMEMRAAVEALKL 79
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ I+SDS+++I EW+P W + GWRKADGK +N +E++ ++
Sbjct: 80 IRKGEKMPAFIRSDSKYLIDGKNEWLPGWITKGWRKADGKEPENVALWREIVELCDGLD- 138
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V +E+V GH + N +AD++A
Sbjct: 139 VTFEWVRGHSDDRMNAEADQLA 160
>gi|70730661|ref|YP_260402.1| ribonuclease H [Pseudomonas protegens Pf-5]
gi|123734801|sp|Q4KBI1.1|RNH_PSEF5 RecName: Full=Ribonuclease H; Short=RNase H
gi|68344960|gb|AAY92566.1| ribonuclease HI [Pseudomonas protegens Pf-5]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ AI L++
Sbjct: 3 DSVEIFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMAAIRGLEEL 59
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K R C + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ +
Sbjct: 60 K-----RQCDVQLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWQQLDEQVNR- 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+V W++V GH HGN +AD++A
Sbjct: 114 HNVTWKWVRGHTGHHGNERADQLA 137
>gi|386039423|ref|YP_005958377.1| ribonuclease HI [Paenibacillus polymyxa M1]
gi|343095461|emb|CCC83670.1| ribonuclease HI [Paenibacillus polymyxa M1]
Length = 145
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDGAC N G +Y L+ A K+T TNN EI+ I ALK K
Sbjct: 4 VMVYTDGACSGNPGPGGWGIILLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKLLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + SDS +++ C ++ W+ W NGWR + +PV+NKE +EL +G+ E V+
Sbjct: 61 PC--RVKVHSDSAYVVNCFKQGWIKNWLRNGWRNSKNQPVENKELWEELWELMGKHE-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ V GH ++ N + D +A A
Sbjct: 118 YVKVKGHSDNELNNRCDFLATSAV 141
>gi|115526123|ref|YP_783034.1| ribonuclease H [Rhodopseudomonas palustris BisA53]
gi|115520070|gb|ABJ08054.1| RNase HI [Rhodopseudomonas palustris BisA53]
Length = 153
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ- 63
V++ TDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 7 VLIHTDGACSGNPGPG---GWGAILKFGEREKELKGGE--SHTTNNRMELMAAISALEAL 61
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K ++D + +DSQ++ + W+ W+ NGW+ AD KPV+N + Q L + Q E
Sbjct: 62 TKPCSVD---LHTDSQYVRNGISSWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKQHE- 117
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W +V GH N +AD++ARD
Sbjct: 118 VRWHWVKGHAGHAENERADQLARD 141
>gi|434381796|ref|YP_006703579.1| ribonuclease H [Brachyspira pilosicoli WesB]
gi|404430445|emb|CCG56491.1| ribonuclease H [Brachyspira pilosicoli WesB]
Length = 163
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNV-AGKVTGRVTNNNAEIQGAIH 59
M DN + ++TDG C N +GA + E + L + G+ TNN E+Q AI
Sbjct: 1 MQKDN-ITIYTDGGCRGNPGIGAWGA--ILLSEKHNLRLEIGESEEHTTNNKMEMQAAIK 57
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL++ K ++ + + SDS +++ + W+ WQ N W K+D KPV+NK+ +L+ ++
Sbjct: 58 ALERLKHSH--NIKLYSDSAYLVNGMNSWIYSWQKNNWIKSDKKPVENKDYWLKLI-ELS 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMA 145
+ S+++ V GH ++ N +ADE+
Sbjct: 115 KKHSIEFIKVKGHSSNKENNRADEIV 140
>gi|383774709|ref|YP_005453778.1| ribonuclease H [Bradyrhizobium sp. S23321]
gi|381362836|dbj|BAL79666.1| ribonuclease H [Bradyrhizobium sp. S23321]
Length = 154
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + E V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHE-VRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|238750480|ref|ZP_04611981.1| Ribonuclease H [Yersinia rohdei ATCC 43380]
gi|238711411|gb|EEQ03628.1| Ribonuclease H [Yersinia rohdei ATCC 43380]
Length = 154
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG TNN E+ AI +L+ S
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHERTFSAGYFLTTNNRMELMAAIVSLEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q +V+W
Sbjct: 62 PCV--VTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAI-QTHTVQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|28870867|ref|NP_793486.1| ribonuclease HI [Pseudomonas syringae pv. tomato str. DC3000]
gi|213968848|ref|ZP_03396989.1| ribonuclease HI [Pseudomonas syringae pv. tomato T1]
gi|301384106|ref|ZP_07232524.1| ribonuclease H [Pseudomonas syringae pv. tomato Max13]
gi|302135018|ref|ZP_07261008.1| ribonuclease H [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422660643|ref|ZP_16723051.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M302278]
gi|37999387|sp|Q87YT0.1|RNH_PSESM RecName: Full=Ribonuclease HI; Short=RNase HI
gi|28854116|gb|AAO57181.1| ribonuclease HI [Pseudomonas syringae pv. tomato str. DC3000]
gi|213926451|gb|EEB60005.1| ribonuclease HI [Pseudomonas syringae pv. tomato T1]
gi|331019244|gb|EGH99300.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|423138813|ref|ZP_17126451.1| ribonuclease HI [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051367|gb|EHY69258.1| ribonuclease HI [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 155
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDTALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|440731343|ref|ZP_20911368.1| ribonuclease H [Xanthomonas translucens DAR61454]
gi|440373305|gb|ELQ10064.1| ribonuclease H [Xanthomonas translucens DAR61454]
Length = 152
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G A Y G VAG TNN E+ AI AL+
Sbjct: 4 VDIHTDGACLGNPGPGGWAALLRYKGLER--EVAG-AEAHTTNNRMELMAAIMALETLSE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ +L E LH Q S+ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRQWKTAGGDPVKNR-DLWERLHAAAQRHSIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHSGDPDNERVDVLARNQA 140
>gi|420376714|ref|ZP_14876435.1| ribonuclease HI [Shigella flexneri 1235-66]
gi|391301671|gb|EIQ59554.1| ribonuclease HI [Shigella flexneri 1235-66]
Length = 155
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFAEGYNLT---TNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +G + +K
Sbjct: 61 EPC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|68473699|ref|XP_719174.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
gi|46440980|gb|EAL00281.1| hypothetical protein CaO19.5614 [Candida albicans SC5314]
Length = 285
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 24/164 (14%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL 114
LK Q+ A + I SDS++ I+ V EW W NGW+ + G+ V NK+ +QE
Sbjct: 177 LKNIHNDLQSGKA-TGKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQET 235
Query: 115 L---------HQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +Q ++++ V GH GN AD +A A
Sbjct: 236 VALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGA 279
>gi|323495337|ref|ZP_08100415.1| ribonuclease H [Vibrio brasiliensis LMG 20546]
gi|323310408|gb|EGA63594.1| ribonuclease H [Vibrio brasiliensis LMG 20546]
Length = 154
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ I ALK K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKQTEKTLAKGYTLTTNNRMEMLATIVALKALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L Q V
Sbjct: 61 EPC--DVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNA-DLWQALDAETQRHQVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARAAA 141
>gi|254503050|ref|ZP_05115201.1| RNase H [Labrenzia alexandrii DFL-11]
gi|222439121|gb|EEE45800.1| RNase H [Labrenzia alexandrii DFL-11]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M +N V ++TDGAC N G G+GV FGE+ G+V TNN E+ AI
Sbjct: 1 MSQENRVTIYTDGACSGNPGPG---GWGVIMRFGEHERELKGGEV--ETTNNRMELTAAI 55
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL K + V + +DS ++ + EWM W+ W+ A KPV+N +L + L
Sbjct: 56 EALNALKRPCV--VDLYTDSTYVRSGISEWMYGWKRKNWKTAANKPVKNA-DLWQALDAA 112
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ V W +V GH N +ADE+AR
Sbjct: 113 RERHDVTWHWVKGHAGHPDNERADELAR 140
>gi|114778791|ref|ZP_01453598.1| ribonuclease H [Mariprofundus ferrooxydans PV-1]
gi|114550922|gb|EAU53486.1| ribonuclease H [Mariprofundus ferrooxydans PV-1]
Length = 145
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V+ FTDGAC N G G+GV G++ G+ TN E+Q A+ ALK
Sbjct: 7 VLAFTDGACSGNPGPG---GWGVLLRMGKHEKEIYGGE--AETTNQQMELQAAVEALKAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K ++ + SDS+++++ + EW+ W+ GW+ KPV N E QE L + V
Sbjct: 62 KQPC--KITVISDSKYVVQGMNEWIHNWKKKGWKTVGKKPVSNLERWQE-LDTLAARHEV 118
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
+W++V GH N +ADE+AR
Sbjct: 119 QWQWVKGHAGHVENERADELAR 140
>gi|341885893|gb|EGT41828.1| hypothetical protein CAEBREN_00223 [Caenorhabditis brenneri]
Length = 140
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H V+TDGAC G GA AGYGVYFGE + N +G+V G +N E++ A A+ AK
Sbjct: 4 HADVYTDGACTNQGLPGAKAGYGVYFGEGSQYNRSGRVDGVQDSNRGELRAAQVAIDSAK 63
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM-ESV 124
S + + I +DSQ++ V +QS G QN++ +Q + + V
Sbjct: 64 SQGLGSITIHTDSQYVRDAV-NGASGFQSAG---------QNRDLMQSIHDSVRTTGMRV 113
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
E V GH N+ GN A ++A
Sbjct: 114 NVELVKGHSNNVGNDAAHKLA 134
>gi|429119811|ref|ZP_19180515.1| Ribonuclease HI [Cronobacter sakazakii 680]
gi|426325726|emb|CCK11252.1| Ribonuclease HI [Cronobacter sakazakii 680]
Length = 158
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI +L+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVSLEALRE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I V + +DSQ++ + + +W+ W+ GW+ + KPV+N + Q L + Q E +KW
Sbjct: 62 HCI--VTLSTDSQYVRQGITQWIHNWKKRGWKTTEKKPVKNVDLWQRLDAALSQHE-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|406914998|gb|EKD54127.1| Ribonuclease H [uncultured bacterium]
Length = 145
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV++FTDGAC N G G+GV +G++ + ++ + TNN E+ AI AL
Sbjct: 3 HVIIFTDGACRGNPGPG---GWGVLLRYGKHEKTFLGAEL--KTTNNRMELMAAIKALTL 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ RV + +DSQ++ K + EW+ W+ W+K+D KPV+N + +EL Q + +
Sbjct: 58 LQEPC--RVDLHTDSQYLQKGITEWLSAWKKRHWKKSDNKPVKNADLWEELDKQSSKHQ- 114
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
+ W ++ H N +AD +A A
Sbjct: 115 ITWHWIKAHNGHPENERADLLANQA 139
>gi|398824097|ref|ZP_10582442.1| ribonuclease HI [Bradyrhizobium sp. YR681]
gi|398225236|gb|EJN11513.1| ribonuclease HI [Bradyrhizobium sp. YR681]
Length = 154
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + E V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHE-VRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|288921896|ref|ZP_06416109.1| ribonuclease H [Frankia sp. EUN1f]
gi|288346744|gb|EFC81060.1| ribonuclease H [Frankia sp. EUN1f]
Length = 156
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDGAC P G GA YG + + G TNN E+ AI AL+
Sbjct: 4 VEIFTDGACSGNPGPGGWGAVLRYGTH-----EKTLYGGEAADTTNNRMELLAAIRALEA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ R + +DSQ++ V W+P+W+ NGW AD KPV+N + Q+L G+ +
Sbjct: 59 LTRPSAVR--LHTDSQYLRNGVSGWLPRWKRNGWLTADKKPVKNADLWQQLDVLAGR-HT 115
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
++W +V GH N +AD +A
Sbjct: 116 IEWLWVKGHAGHPDNERADRLA 137
>gi|182679289|ref|YP_001833435.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635172|gb|ACB95946.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
Length = 153
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + FG++ G+ + TNN E+ AI AL+
Sbjct: 5 VTIYTDGACSGNPGPG---GWGAILMFGQHEKELSGGEA--QTTNNRMELTAAIRALEA- 58
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ R C + +DS ++ V W+ W+ NGWR AD KPV+N E QE L Q+
Sbjct: 59 ----LTRPCAVDLHTDSNYLRGGVTSWIKGWKKNGWRTADKKPVKNVELWQE-LDQLAAS 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMAR 146
+ W +V GH N +AD +AR
Sbjct: 114 HEIAWHWVKGHAGHPLNERADALAR 138
>gi|343500519|ref|ZP_08738411.1| ribonuclease H [Vibrio tubiashii ATCC 19109]
gi|418477290|ref|ZP_13046423.1| ribonuclease H [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342820235|gb|EGU55061.1| ribonuclease H [Vibrio tubiashii ATCC 19109]
gi|384575030|gb|EIF05484.1| ribonuclease H [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 154
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ I AL QA
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKQTEKTLAKGYTLTTNNRMEMLATIVAL-QAL 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L + + SV
Sbjct: 60 KEPCD-VILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNA-DLWQALDKETERHSVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARAAA 141
>gi|357029677|ref|ZP_09091660.1| ribonuclease H [Mesorhizobium amorphae CCNWGS0123]
gi|355534386|gb|EHH03695.1| ribonuclease H [Mesorhizobium amorphae CCNWGS0123]
Length = 179
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V +FTDGAC N G G+G N TNN E+ AI AL
Sbjct: 3 DMTKRVEIFTDGACSGNPGPG---GWGAILRFNGKTKELSGGEAETTNNRMELLAAISAL 59
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L + +
Sbjct: 60 NALKEPCA--VDLHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNG-ELWQALDEANRR 116
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARD 147
V W +V GH N +ADE+AR+
Sbjct: 117 HHVTWNWVKGHAGHAENERADELARE 142
>gi|66045008|ref|YP_234849.1| ribonuclease H [Pseudomonas syringae pv. syringae B728a]
gi|422640422|ref|ZP_16703849.1| ribonuclease H [Pseudomonas syringae Cit 7]
gi|422674849|ref|ZP_16734199.1| ribonuclease H [Pseudomonas syringae pv. aceris str. M302273]
gi|424066822|ref|ZP_17804284.1| ribonuclease HI [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|424071476|ref|ZP_17808901.1| ribonuclease HI [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|440746720|ref|ZP_20926000.1| ribonuclease H [Pseudomonas syringae BRIP39023]
gi|75502659|sp|Q4ZVL1.1|RNH_PSEU2 RecName: Full=Ribonuclease H; Short=RNase H
gi|63255715|gb|AAY36811.1| RNase HI [Pseudomonas syringae pv. syringae B728a]
gi|330952813|gb|EGH53073.1| ribonuclease H [Pseudomonas syringae Cit 7]
gi|330972573|gb|EGH72639.1| ribonuclease H [Pseudomonas syringae pv. aceris str. M302273]
gi|407998856|gb|EKG39254.1| ribonuclease HI [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|408001907|gb|EKG42183.1| ribonuclease HI [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|440370980|gb|ELQ07845.1| ribonuclease H [Pseudomonas syringae BRIP39023]
Length = 150
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|453084651|gb|EMF12695.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 212
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV--TNNNAEIQGAIHAL 61
++ +V+ DGAC NG A A YG+YFG N+P N G V + T+ AEI+ HAL
Sbjct: 55 ESTMVIHIDGACRGNGTRNARAAYGIYFGPNSPYNTWGLVPAHMPQTSTRAEIEALAHAL 114
Query: 62 KQAKS-----ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
+S + + I +DS F+++ + EWM W +N A+G+ V + E L +L
Sbjct: 115 PVLQSICSHDLQLSDIKIATDSAFLVRAMSEWMEGWIANNGITANGRRVAHFERLWDLHD 174
Query: 117 QIGQME 122
+ +ME
Sbjct: 175 TLDEME 180
>gi|225075061|ref|ZP_03718260.1| hypothetical protein NEIFLAOT_00060 [Neisseria flavescens
NRL30031/H210]
gi|224953545|gb|EEG34754.1| hypothetical protein NEIFLAOT_00060 [Neisseria flavescens
NRL30031/H210]
Length = 147
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I
Sbjct: 1 MPMDKPVYLYTDGACKGNPGAG---GWGVFMRYGTHEKELFGGEA--ETTNNRMELTAVI 55
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
LK K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L +
Sbjct: 56 EGLKSLKRRC--QVVICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKN-DDLWKELDSL 112
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q V+W +V GH N KADE+A A
Sbjct: 113 VQQHDVRWTWVKGHAGHPENEKADELANQGA 143
>gi|386398760|ref|ZP_10083538.1| ribonuclease HI [Bradyrhizobium sp. WSM1253]
gi|385739386|gb|EIG59582.1| ribonuclease HI [Bradyrhizobium sp. WSM1253]
Length = 154
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + + V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAAL-KAHDVRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|298489925|ref|YP_003720102.1| ribonuclease H ['Nostoc azollae' 0708]
gi|298231843|gb|ADI62979.1| Ribonuclease H ['Nostoc azollae' 0708]
Length = 302
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ-AKSA 67
++TDGAC N G A VYF + + ++ G V+ TNN E+Q AI AL+ KS
Sbjct: 10 IYTDGACTGNPGPGGWAVV-VYFNDGS-VHEMGDVSRHTTNNKMEMQAAIAALELFEKSG 67
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
+ + + +DS+++I V +WM W+ GW+K+DG PVQN Q+LL + Q+ S VK
Sbjct: 68 QTEPITLYTDSEYVINSVTKWMQGWKKKGWKKSDGNPVQN----QDLLQTLDQLNSRLVK 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHSGNIGNERCDVIARSFAS 148
>gi|253700387|ref|YP_003021576.1| ribonuclease H [Geobacter sp. M21]
gi|251775237|gb|ACT17818.1| Ribonuclease H [Geobacter sp. M21]
Length = 148
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +F DGAC N VG GYG + G TNN E+ AI AL+ K
Sbjct: 2 QVEIFCDGACSGNPGVG---GYGSILRCGETVKEISGADGDTTNNRMEMSAAIAALEALK 58
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ K + EW+ W GW + +PV N+ +L E L ++ ++ ++
Sbjct: 59 RPC--QVVVTTDSQYLAKGMTEWLSGWVKRGWVNSKKEPVLNR-DLWERLLELSKVHQIR 115
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
W +V GH N + DE+AR A
Sbjct: 116 WVWVRGHNGHVENERCDELARAA 138
>gi|237748729|ref|ZP_04579209.1| ribonuclease H [Oxalobacter formigenes OXCC13]
gi|229380091|gb|EEO30182.1| ribonuclease H [Oxalobacter formigenes OXCC13]
Length = 144
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V ++TDGAC N G G+GV+ TNN E+ I AL+
Sbjct: 2 NEVEIYTDGACRGNPGPG---GWGVWMIAGGHEKELFGGDADTTNNRMELMAVIEALRAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ++ K + EW+ KW++ GWR AD K V+N + E L Q +
Sbjct: 59 KRPC--KVVLHTDSQYVQKGISEWIHKWKARGWRTADKKLVKNVDLWME-LDQARAQHDI 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W ++ GH GN KAD++A
Sbjct: 116 DWRWIKGHAGHEGNEKADQLA 136
>gi|283783998|ref|YP_003363863.1| ribonuclease HI [Citrobacter rodentium ICC168]
gi|282947452|emb|CBG86999.1| ribonuclease HI [Citrobacter rodentium ICC168]
Length = 155
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + +T TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYTLT---TNNRMELMATIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>gi|296125369|ref|YP_003632621.1| ribonuclease H [Brachyspira murdochii DSM 12563]
gi|296017185|gb|ADG70422.1| Ribonuclease H [Brachyspira murdochii DSM 12563]
Length = 163
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M DN ++++TDG C N +GA + N L + G+ TNN E++ AI A
Sbjct: 1 MIRDN-IIIYTDGGCRGNPGLGAWGAILISEKHNLRLEI-GESEDNTTNNRMEMKAAIKA 58
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L++ K ++ + + SDS +++ + +W+ WQ N W K+D KPV+NKE L+ ++ +
Sbjct: 59 LERLKHSH--NIKLYSDSAYLVNGMTKWIYSWQKNNWIKSDKKPVENKEYWIRLI-ELSK 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+++ V GH N+ N +ADE+
Sbjct: 116 KHDIEFIKVKGHSNNKENNRADEIV 140
>gi|344300213|gb|EGW30553.1| hypothetical protein SPAPADRAFT_63394 [Spathaspora passalidarum
NRRL Y-27907]
Length = 286
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 19/156 (12%)
Query: 9 VFTDGACPRNGKVGA-SAGYGVYFGENNPLNVAGKVT----GRVTNNNAEIQGAIHALKQ 63
++ DGAC NGK + SAGYGV++G+ +P N A + G+ TN AE+ HAL+
Sbjct: 119 IYVDGACRGNGKFKSPSAGYGVFYGDKDPRNAAVPLNKVYKGKPTNQRAELYAMNHALEN 178
Query: 64 A-KSANIDRVC----IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ---ELL 115
+ ++ C I SDS++ I+ V W +W+ GW+ + K V N + ++ EL
Sbjct: 179 INQELKNNKACRPSEIHSDSKYAIESVTNWSRRWKQEGWKTSQNKDVANADLIKPMVELK 238
Query: 116 HQI-GQMESVKWE-----FVPGHGNSHGNMKADEMA 145
+I Q + WE V GH + GN +AD++A
Sbjct: 239 EKIDTQYKERSWEPLGFTHVRGHAGNEGNERADQLA 274
>gi|241760397|ref|ZP_04758492.1| ribonuclease HI [Neisseria flavescens SK114]
gi|241319275|gb|EER55753.1| ribonuclease HI [Neisseria flavescens SK114]
Length = 165
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I
Sbjct: 19 MPMDKPVYLYTDGACKGNPGAG---GWGVFMRYGTHEKELFGGEA--ETTNNRMELTAVI 73
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
LK K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L +
Sbjct: 74 EGLKSLKRRC--QVVICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKN-DDLWKELDSL 130
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q V+W +V GH N KADE+A A
Sbjct: 131 VQQHDVRWTWVKGHAGHPENEKADELANQGA 161
>gi|117925405|ref|YP_866022.1| RNase HI [Magnetococcus marinus MC-1]
gi|117609161|gb|ABK44616.1| RNase HI [Magnetococcus marinus MC-1]
Length = 238
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 14/152 (9%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKV--TGRVTNNNAEIQG 56
+ PD ++++TDGAC N G G+GV+ +GE +A ++ + TNN E+
Sbjct: 82 LAPDMEIILYTDGACSGNPGPG---GWGVHGRYGEQ----MADQMGWAPQTTNNRMEMLA 134
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
AIHAL+ + RV I +DS ++ + +W+ W+ GW+K+DG V N +L + L
Sbjct: 135 AIHALEPLPEGS--RVKIITDSAYVKDGITKWIHGWKVRGWKKSDGNTVLNV-DLWKRLD 191
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
Q V W+++ GH GN +AD +AR+A
Sbjct: 192 AARQNRDVTWQWIKGHAGHAGNEQADRLARNA 223
>gi|330810141|ref|YP_004354603.1| ribonuclease HI [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|423697791|ref|ZP_17672281.1| ribonuclease HI [Pseudomonas fluorescens Q8r1-96]
gi|327378249|gb|AEA69599.1| ribonuclease HI [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|388005552|gb|EIK66819.1| ribonuclease HI [Pseudomonas fluorescens Q8r1-96]
Length = 150
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGETN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRPC--DVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNA-DLWKLLDEQVSRHNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|452961708|gb|EME67007.1| ribonuclease H [Rhodococcus ruber BKS 20-38]
Length = 203
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G +G TN AE++ + ALK
Sbjct: 6 IIVSTDGSCLRNP--GGAIGWA-WVNHEGPSRAGGDRSG--TNQIAELRALLEALKAHPG 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
+ + I+SDSQ+ IKC EW+P W+ GW+ A G PV+N + +Q + + + V+
Sbjct: 61 P--EPMIIESDSQYAIKCASEWLPGWKRKGWKTATGAPVKNLDLVQAIDRVLAERSGPVR 118
Query: 126 WEFVPGHGNSHGNMKADEM 144
+ +V GH +H N AD++
Sbjct: 119 FRWVRGHVGNHFNELADKL 137
>gi|338706318|ref|YP_004673086.1| ribonuclease H [Treponema paraluiscuniculi Cuniculi A]
gi|335344379|gb|AEH40295.1| ribonuclease H [Treponema paraluiscuniculi Cuniculi A]
Length = 169
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 1 MDPDNHVVVFTDGACPRN----GKVGASAGYGVYF---GENNPLNVAGKVTGRV---TNN 50
M+ + ++TDGAC N G A V F G+ P A +G TNN
Sbjct: 1 MNAHAALTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQTAPEAAAFTRSGSAYPSTNN 60
Query: 51 NAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
E+ I+AL++A + V + +DSQ++ K + +W+ W+ NGW+ A +PV+NK +
Sbjct: 61 RMELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWRHNGWKTAAKQPVKNK-D 119
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
L E L + SV+W +V GH N D +A DAA
Sbjct: 120 LWEALSALADTLSVEWRWVKGHAGDPYNELCDRLATDAA 158
>gi|419834367|ref|ZP_14357822.1| RNase H family protein [Vibrio cholerae HC-61A2]
gi|422308175|ref|ZP_16395328.1| RNase H family protein [Vibrio cholerae CP1035(8)]
gi|408618040|gb|EKK91129.1| RNase H family protein [Vibrio cholerae CP1035(8)]
gi|408649189|gb|EKL20506.1| RNase H family protein [Vibrio cholerae HC-61A2]
Length = 152
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
+FTDG+C N G GYGV + TNN E+ A+ AL+ K
Sbjct: 3 IFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQALKEPC 59
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V+W +
Sbjct: 60 --RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQ-VEWRW 116
Query: 129 VPGHGNSHGNMKADEMARDAA 149
V GH N DE+AR AA
Sbjct: 117 VKGHAGHRENEMCDELARQAA 137
>gi|333999691|ref|YP_004532303.1| ribonuclease HI [Treponema primitia ZAS-2]
gi|333740911|gb|AEF86401.1| ribonuclease HI [Treponema primitia ZAS-2]
Length = 148
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG C +G G V G + + TNN E+ A+ AL+
Sbjct: 5 VYTDGGC--SGNPGPGGWAYVILGPEDKIREKWGAEAETTNNRMELYAALEALEALVKLK 62
Query: 69 I--DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
I + V + +DSQ++ K + +W+ W+ NGWR +D KPV+N +EL + L ++ +KW
Sbjct: 63 IKAEAVTVYTDSQYVQKGMSQWIHSWKLNGWRTSDKKPVKN-QELWQRLDELSLKFPLKW 121
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
++V GH + N + D+M ++A
Sbjct: 122 KWVRGHAGNEYNERCDQMTQEA 143
>gi|440288992|ref|YP_007341757.1| ribonuclease HI [Enterobacteriaceae bacterium strain FGI 57]
gi|440048514|gb|AGB79572.1| ribonuclease HI [Enterobacteriaceae bacterium strain FGI 57]
Length = 155
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYRQKEKTFSEGYYLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L +GQ E ++W
Sbjct: 62 HC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGQHE-IRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 MWVKGHAGHPENERCDELARAAA 141
>gi|398913104|ref|ZP_10656300.1| ribonuclease HI [Pseudomonas sp. GM49]
gi|426409780|ref|YP_007029879.1| ribonuclease H [Pseudomonas sp. UW4]
gi|398181421|gb|EJM68989.1| ribonuclease HI [Pseudomonas sp. GM49]
gi|426267997|gb|AFY20074.1| ribonuclease H [Pseudomonas sp. UW4]
Length = 150
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + V
Sbjct: 60 KRPC--EVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|398873285|ref|ZP_10628546.1| ribonuclease HI [Pseudomonas sp. GM74]
gi|398957977|ref|ZP_10677454.1| ribonuclease HI [Pseudomonas sp. GM33]
gi|398147317|gb|EJM36028.1| ribonuclease HI [Pseudomonas sp. GM33]
gi|398200134|gb|EJM87060.1| ribonuclease HI [Pseudomonas sp. GM74]
Length = 150
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + V
Sbjct: 60 KRPC--EVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|307249646|ref|ZP_07531632.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306858344|gb|EFM90414.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 153
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ AI AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYLQTTNNRMELRAAIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK EL L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-ELWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 TWVKGHSGHRENEICDELAKAGA 140
>gi|293392716|ref|ZP_06637035.1| ribonuclease HI [Serratia odorifera DSM 4582]
gi|291424833|gb|EFE98043.1| ribonuclease HI [Serratia odorifera DSM 4582]
Length = 177
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL +A
Sbjct: 26 QVEIFTDGSCLGNPGPGGYGAILRYKQVEKTFSAGYRLT---TNNRMELMAAIVAL-EAL 81
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+A + V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I + +++
Sbjct: 82 TAPCE-VILSTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLAIAR-HTIR 139
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
WE+V GH N + D +AR+AAG
Sbjct: 140 WEWVKGHAGHPENERCDVLAREAAG 164
>gi|359785345|ref|ZP_09288497.1| ribonuclease H [Halomonas sp. GFAJ-1]
gi|359297274|gb|EHK61510.1| ribonuclease H [Halomonas sp. GFAJ-1]
Length = 159
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDGAC N G G+GV TNN E+ AI AL+
Sbjct: 12 VTVYTDGACRGNPGPG---GWGVVLSSGQHEKTLKGYEAETTNNRMELMAAIMALRTLNK 68
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DSQ++ + + +W+ W GW+ A +PV+N E L + LH+ Q V+W
Sbjct: 69 SC--EVALWTDSQYVRQGITQWIYNWIKRGWKTAAKQPVKNAE-LWKTLHEETQRHKVEW 125
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH GN +AD +A +A
Sbjct: 126 HWVKGHSGHPGNERADALANEA 147
>gi|407789540|ref|ZP_11136640.1| ribonuclease H [Gallaecimonas xiamenensis 3-C-1]
gi|407206200|gb|EKE76158.1| ribonuclease H [Gallaecimonas xiamenensis 3-C-1]
Length = 154
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ ++TDG+C N G GYGV + TNN E+ AI L+ K
Sbjct: 5 ITLYTDGSCLGNPGPG---GYGVLLRYRQHEKCLSQGYRLTTNNRMELLAAIAGLESLKE 61
Query: 67 -ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ID I +DSQ++ + + WM W+ NGWR A +PV+N++ Q L G+ E ++
Sbjct: 62 PCSID---IWTDSQYVRQGITSWMAGWKKNGWRTASRQPVKNQDLWQRLDAAAGRHE-IR 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N K D++AR AA
Sbjct: 118 WHWVKGHSGHPENEKVDQLARAAA 141
>gi|451982331|ref|ZP_21930649.1| Ribonuclease H [Nitrospina gracilis 3/211]
gi|451760496|emb|CCQ91933.1| Ribonuclease H [Nitrospina gracilis 3/211]
Length = 146
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++++TDGAC G G G+ F L G TNN E+ AI ALK+ K
Sbjct: 4 ILIYTDGAC--KGNPGPGGYGGLIFQNGKKLEFKGS-DPSTTNNIMEMTAAIVALKKLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DS++++K + EWMP W W + KPV+NKE QE L ++ ++ W
Sbjct: 61 PS--EVELYTDSEYLVKGMTEWMPNWVRRNWTTSTKKPVKNKELWQE-LRRLADTHNITW 117
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
++V GH N +AD++A +A
Sbjct: 118 KWVRGHAGHPENERADQLANEA 139
>gi|422299455|ref|ZP_16387022.1| ribonuclease HI [Pseudomonas avellanae BPIC 631]
gi|422591354|ref|ZP_16665999.1| ribonuclease H [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|422650217|ref|ZP_16713023.1| ribonuclease H [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330878789|gb|EGH12938.1| ribonuclease H [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330963306|gb|EGH63566.1| ribonuclease H [Pseudomonas syringae pv. actinidiae str. M302091]
gi|407988625|gb|EKG31115.1| ribonuclease HI [Pseudomonas avellanae BPIC 631]
Length = 150
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G + G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|157828953|ref|YP_001495195.1| ribonuclease H [Rickettsia rickettsii str. 'Sheila Smith']
gi|378721768|ref|YP_005286655.1| ribonuclease H [Rickettsia rickettsii str. Colombia]
gi|378723113|ref|YP_005287999.1| ribonuclease H [Rickettsia rickettsii str. Arizona]
gi|378724467|ref|YP_005289351.1| ribonuclease H [Rickettsia rickettsii str. Hauke]
gi|379015987|ref|YP_005292222.1| ribonuclease H [Rickettsia rickettsii str. Brazil]
gi|157801434|gb|ABV76687.1| ribonuclease H [Rickettsia rickettsii str. 'Sheila Smith']
gi|376324511|gb|AFB21751.1| ribonuclease H [Rickettsia rickettsii str. Brazil]
gi|376326792|gb|AFB24031.1| ribonuclease H [Rickettsia rickettsii str. Colombia]
gi|376328137|gb|AFB25375.1| ribonuclease H [Rickettsia rickettsii str. Arizona]
gi|376333482|gb|AFB30715.1| ribonuclease H [Rickettsia rickettsii str. Hauke]
Length = 155
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ V+++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVLIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYTELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|374578326|ref|ZP_09651422.1| ribonuclease HI [Bradyrhizobium sp. WSM471]
gi|374426647|gb|EHR06180.1| ribonuclease HI [Bradyrhizobium sp. WSM471]
Length = 154
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + + V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAAL-KAHDVRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|238794444|ref|ZP_04638054.1| Ribonuclease H [Yersinia intermedia ATCC 29909]
gi|238726239|gb|EEQ17783.1| Ribonuclease H [Yersinia intermedia ATCC 29909]
Length = 154
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAIMRYKQHEKTFSAGYRLT---TNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +V+W
Sbjct: 62 PC--QVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QGHTVQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARLAA 141
>gi|397905928|ref|ZP_10506761.1| Ribonuclease HI [Caloramator australicus RC3]
gi|397161031|emb|CCJ34096.1| Ribonuclease HI [Caloramator australicus RC3]
Length = 152
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V+++TDG C NG GYG + + K + TNN E+ AI AL K
Sbjct: 4 EVIIYTDGGCRGNGNEETVGGYGAVLIYKDKIKTIKKGFKKTTNNIMELTAAIDALSLLK 63
Query: 66 SANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+V + SDS +++ Q W+ KW+ NGW+ A +PV+NK EL E L + ++ +
Sbjct: 64 EPC--KVKLHSDSAYLVNAFNQGWVEKWKKNGWKTASKEPVKNK-ELWEKLIEFTKVHEI 120
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
++ V GH + N D++A +A
Sbjct: 121 EFIKVKGHADDEMNNLCDKLANEA 144
>gi|359798086|ref|ZP_09300661.1| ribonuclease H [Achromobacter arsenitoxydans SY8]
gi|359363920|gb|EHK65642.1| ribonuclease H [Achromobacter arsenitoxydans SY8]
Length = 153
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ V ++TDGAC N G G+GV G + G++ + TNN E+ I L
Sbjct: 8 EQKVEMWTDGACKGNPGPG---GWGVLMRAGAHEKTLHGGEL--QTTNNRMELLAVIEGL 62
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K + V I +DSQ+++K + EW+ W+ GW AD KPV+N E Q L Q+ +
Sbjct: 63 RALKRPCV--VTIHTDSQYVMKGMTEWLANWKRRGWMTADKKPVKNAELWQALDDQV-RR 119
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN +AD++A
Sbjct: 120 HQVSWKWVRGHAGDPGNERADQLA 143
>gi|422630363|ref|ZP_16695561.1| ribonuclease H, partial [Pseudomonas syringae pv. pisi str. 1704B]
gi|330939729|gb|EGH43018.1| ribonuclease H [Pseudomonas syringae pv. pisi str. 1704B]
Length = 140
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G + G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|329889542|ref|ZP_08267885.1| RNase H family protein [Brevundimonas diminuta ATCC 11568]
gi|328844843|gb|EGF94407.1| RNase H family protein [Brevundimonas diminuta ATCC 11568]
Length = 150
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF----GENNPLNVAGKVTGRVTNNNAEIQG 56
M ++HV++ TDGAC N G G+G G L +T TNN E+
Sbjct: 1 MSLNDHVIIHTDGACKGNPGPG---GWGAILQTGGGHEKELWGGESLT---TNNRMELMA 54
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
AI AL+ K RV + +DS+++++ V EW+ W++ GW+ AD KPV+N E+L L
Sbjct: 55 AIMALEALKRPC--RVDLHTDSKYVMQGVTEWIRGWKARGWKTADKKPVKN-EDLWRRLD 111
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ VKW +V GH N +AD +A
Sbjct: 112 EARNRHEVKWHWVKGHAGHALNERADGLA 140
>gi|284799575|ref|ZP_05984324.2| ribonuclease HI [Neisseria subflava NJ9703]
gi|284797429|gb|EFC52776.1| ribonuclease HI [Neisseria subflava NJ9703]
Length = 180
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAI 58
M D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I
Sbjct: 34 MPMDKPVYLYTDGACKGNPGAG---GWGVFMRYGTHEKELFGGE--AETTNNRMELTAVI 88
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
LK K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L +
Sbjct: 89 EGLKSLKRRC--QVVICTDSQYVKNGMESWIRGWKKNGWKTAAKKPVKN-DDLWKELDSL 145
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
Q V+W +V GH N KADE+A A
Sbjct: 146 VQQHDVRWTWVKGHAGHPENEKADELANRGAA 177
>gi|414077277|ref|YP_006996595.1| ribonuclease H-like protein [Anabaena sp. 90]
gi|413970693|gb|AFW94782.1| ribonuclease H-like protein [Anabaena sp. 90]
Length = 302
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 86/144 (59%), Gaps = 9/144 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDGAC N G G VYF + + ++ G + TNN E+Q AI AL+ KS+
Sbjct: 10 IYTDGACTGNPGPGG-WGTVVYFHDGS-VHEMGDSSQHTTNNKMEMQAAIAALEFFKSSR 67
Query: 69 -IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
+ + + +DS+++I CV +W+ W+ NGW+KADG PVQN Q+LL + Q+ S V+
Sbjct: 68 QTEPITLYTDSKYVIDCVTKWVKGWKKNGWKKADGNPVQN----QDLLEILDQLNSRLVQ 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE V GH + GN + D +AR A
Sbjct: 124 WEHVRGHSGNIGNERCDVIARSFA 147
>gi|386389401|ref|ZP_10074217.1| ribonuclease HI [Haemophilus paraphrohaemolyticus HK411]
gi|385695780|gb|EIG26331.1| ribonuclease HI [Haemophilus paraphrohaemolyticus HK411]
Length = 167
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 17 VEIFTDGSCLGNPGKG---GVGILLRYNQHEKTVSKGYFQTTNNRMELRAVIEALSMLKE 73
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + SDSQ+M +Q+W+ W+ N W+ +D KPV+NK +L L Q Q ++W
Sbjct: 74 PCM--VELNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNK-DLWIALDQEIQRHQIEW 130
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 131 TWVKGHSGHRENEICDELAKQGA 153
>gi|144898458|emb|CAM75322.1| Ribonuclease HI [Magnetospirillum gryphiswaldense MSR-1]
Length = 147
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G Y G L T TNN E+ AI AL+
Sbjct: 4 RVEIFTDGACSGNPGPGGWGAILRYKGVEKELCGGENPT---TNNRMEMMAAIMALE--- 57
Query: 66 SANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ R C + +DSQ+++K + EW+ W++ GW+ AD KPV+N ++L + L
Sbjct: 58 --TLSRSCPVTLYTDSQYVMKGMTEWLKGWKARGWKTADKKPVKN-DDLWQRLDAACARH 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMARD 147
+ W++V GH N +AD++ARD
Sbjct: 115 QITWQWVKGHAGHPENERADQLARD 139
>gi|295395280|ref|ZP_06805484.1| ribonuclease HI [Brevibacterium mcbrellneri ATCC 49030]
gi|294971831|gb|EFG47702.1| ribonuclease HI [Brevibacterium mcbrellneri ATCC 49030]
Length = 215
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Query: 48 TNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQN 107
TNN AE+Q I LK + D + I +DS+++I V +WMP W+ GW+KA+G+ V N
Sbjct: 37 TNNRAELQAVIEILKATAHTHED-ILILADSKYVINSVTKWMPVWRLKGWKKANGQDVLN 95
Query: 108 KEELQELLHQIGQME----SVKWEFVPGHGNSHGNMKADEMARDAA 149
++ ++EL Q+ +E ++K+++V GH N N AD+ AR A
Sbjct: 96 RDLMEELWEQVDALEKSGRTLKFQWVKGHSNHELNETADQRARAVA 141
>gi|340361291|ref|ZP_08683721.1| ribonuclease HI [Neisseria macacae ATCC 33926]
gi|339888810|gb|EGQ78241.1| ribonuclease HI [Neisseria macacae ATCC 33926]
Length = 145
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I L
Sbjct: 2 DKPVYLYTDGACKGNPGAG---GWGVFMRYGAHEKELFGGEA--ETTNNRMELTAVIEGL 56
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L + Q
Sbjct: 57 KSLKRRC--QVIIYTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKN-DDLWKELDSLVQQ 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N KADE+A A
Sbjct: 114 HDVRWTWVKGHAGHPENEKADELANRGA 141
>gi|289679440|ref|ZP_06500330.1| ribonuclease H [Pseudomonas syringae pv. syringae FF5]
gi|422664667|ref|ZP_16724540.1| ribonuclease H [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|440721418|ref|ZP_20901817.1| ribonuclease H [Pseudomonas syringae BRIP34876]
gi|440724465|ref|ZP_20904747.1| ribonuclease H [Pseudomonas syringae BRIP34881]
gi|443644714|ref|ZP_21128564.1| Ribonuclease HI [Pseudomonas syringae pv. syringae B64]
gi|330975086|gb|EGH75152.1| ribonuclease H [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|440363839|gb|ELQ00998.1| ribonuclease H [Pseudomonas syringae BRIP34876]
gi|440370109|gb|ELQ07055.1| ribonuclease H [Pseudomonas syringae BRIP34881]
gi|443284731|gb|ELS43736.1| Ribonuclease HI [Pseudomonas syringae pv. syringae B64]
Length = 150
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G + G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLICKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|379019567|ref|YP_005295801.1| ribonuclease H [Rickettsia rickettsii str. Hlp#2]
gi|379712836|ref|YP_005301175.1| ribonuclease H [Rickettsia philipii str. 364D]
gi|376329481|gb|AFB26718.1| ribonuclease H [Rickettsia philipii str. 364D]
gi|376332147|gb|AFB29381.1| ribonuclease H [Rickettsia rickettsii str. Hlp#2]
Length = 155
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ V+++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVLIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|310640259|ref|YP_003945017.1| ribonuclease hi [Paenibacillus polymyxa SC2]
gi|309245209|gb|ADO54776.1| Ribonuclease HI [Paenibacillus polymyxa SC2]
Length = 145
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDGAC N G +Y L+ A K+T TNN EI+ I ALK K
Sbjct: 4 VMVYTDGACSGNPGPGGWGIVLLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKLLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + SDS +++ C ++ W+ W NGWR + +PV+NKE +EL +G E V+
Sbjct: 61 PC--RVKVHSDSAYVVNCFKQGWIKNWLRNGWRNSKNQPVENKELWEELWELMGNHE-VE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ V GH ++ N + D +A A
Sbjct: 118 YVKVKGHSDNELNNRCDFLATSAV 141
>gi|269468812|gb|EEZ80416.1| Ribonuclease HI [uncultured SUP05 cluster bacterium]
Length = 145
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++++TDG C N +G G+GV+ + V TNN E+ AI AL+ KS
Sbjct: 4 IIIYTDGGCRGNPGIG---GWGVWLRYGDHDKKLKGVEKGTTNNQMELMAAIKALEAIKS 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ I + + +DS++++ + +W+ W++ W+ A+ KPV+N L + L + + +V W
Sbjct: 61 STI-SIDLFTDSKYVMHGINDWIVGWKAKDWKTANRKPVKN-VALWKRLDALNEQHNVDW 118
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH + GN ADE+A A
Sbjct: 119 HWVKGHSGNEGNDIADELANQA 140
>gi|27376427|ref|NP_767956.1| ribonuclease H [Bradyrhizobium japonicum USDA 110]
gi|81841937|sp|Q89UU3.1|RNH_BRAJA RecName: Full=Ribonuclease H; Short=RNase H
gi|27349567|dbj|BAC46581.1| ribonuclease H [Bradyrhizobium japonicum USDA 110]
Length = 154
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G + + LN + T TNN E+ AI AL+ K
Sbjct: 7 VTIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHT---TNNQMELMAAISALEALKK 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ NGWR AD KPV+N E Q L + + V+W
Sbjct: 64 PCT--VDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAAL-KAHQVRW 120
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH N +AD++ARD
Sbjct: 121 HWVKGHAGHPENERADQLARD 141
>gi|403721142|ref|ZP_10944322.1| ribonuclease H [Gordonia rhizosphera NBRC 16068]
gi|403207384|dbj|GAB88653.1| ribonuclease H [Gordonia rhizosphera NBRC 16068]
Length = 163
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G G+G N TNN E+ GAI L A
Sbjct: 19 VEISTDGACLGNPGPG---GWGAVLRYRNHEKRISGSDPDTTNNKMELTGAIEGL--AAL 73
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV I +DS ++ + +W+ WQ NGW+ AD KPV+N + + L+ + + E V W
Sbjct: 74 TKPSRVVIYTDSNYVRNGITKWVSGWQRNGWKTADKKPVKNADLWRRLVDEEERHE-VTW 132
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH H N ADE+A AA
Sbjct: 133 KWVKGHNGDHYNEIADELATTAA 155
>gi|397166895|ref|ZP_10490338.1| ribonuclease HI [Enterobacter radicincitans DSM 16656]
gi|396091041|gb|EJI88608.1| ribonuclease HI [Enterobacter radicincitans DSM 16656]
Length = 155
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRQHERTFSAGYRLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L + Q + +KW
Sbjct: 62 HC--EIVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|421887833|ref|ZP_16318969.1| Ribonuclease H (RNase H) [Ralstonia solanacearum K60-1]
gi|378966811|emb|CCF95717.1| Ribonuclease H (RNase H) [Ralstonia solanacearum K60-1]
Length = 151
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V++DGAC N +G V G L VT TNN E+ I A + K
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVT---TNNRMELMAVIEAFRALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L + V W
Sbjct: 61 PC--RVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDALVVAHEVSW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +AD +A
Sbjct: 118 HWVKGHAGHPGNERADALA 136
>gi|157964869|ref|YP_001499693.1| ribonuclease H [Rickettsia massiliae MTU5]
gi|157844645|gb|ABV85146.1| Ribonuclease H [Rickettsia massiliae MTU5]
Length = 155
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK- 65
VV++TDGAC N G G+G N+ TNN EI A+ AL+ K
Sbjct: 8 VVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRMLKK 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ + ++
Sbjct: 65 SCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-HTII 120
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W++V GH N+ GN+ AD++A
Sbjct: 121 WKWVKGHANNSGNIAADKLA 140
>gi|197118830|ref|YP_002139257.1| ribonuclease H [Geobacter bemidjiensis Bem]
gi|197088190|gb|ACH39461.1| ribonuclease HI [Geobacter bemidjiensis Bem]
Length = 148
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +F DGAC N VG GYG + G TNN E+ AI AL K
Sbjct: 2 QVEIFCDGACSGNPGVG---GYGSILRCGETVKEISGAEGDTTNNRMEMSAAIAALDALK 58
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ K + EW+ W GW + +PV N+ +L E L ++ ++ ++
Sbjct: 59 RPC--QVVVTTDSQYLAKGMTEWLSGWVKRGWVNSKKEPVLNR-DLWERLLELSRVHQIR 115
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
W +V GH N + DE+AR A
Sbjct: 116 WVWVRGHNGHVENERCDELARAA 138
>gi|443702651|gb|ELU00574.1| hypothetical protein CAPTEDRAFT_101318, partial [Capitella teleta]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G G+GV N TNN E+ AI LK K
Sbjct: 1 VEIFTDGACKGNPGPG---GWGVLLRYGNVEKELYGGEPETTNNRMELMAAIEGLKALKR 57
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ + +DSQ++ K + EWM W+ W+ A GKPV+N ++L +LL + Q V W
Sbjct: 58 PCT--IILTTDSQYVRKGITEWMAGWKRKNWKTAAGKPVKN-QDLWQLLDEQSQRHEVDW 114
Query: 127 EFVPGHGNSHGNMKADEMA 145
++ GH N AD++A
Sbjct: 115 RWIKGHAGHRENEIADQLA 133
>gi|417814262|ref|ZP_12460915.1| ribonuclease HI [Vibrio cholerae HC-49A2]
gi|421329451|ref|ZP_15779961.1| ribonuclease HI [Vibrio cholerae CP1042(15)]
gi|424614042|ref|ZP_18052827.1| ribonuclease HI [Vibrio cholerae HC-41A1]
gi|340036748|gb|EGQ97724.1| ribonuclease HI [Vibrio cholerae HC-49A2]
gi|395927985|gb|EJH38748.1| ribonuclease HI [Vibrio cholerae CP1042(15)]
gi|408011965|gb|EKG49763.1| ribonuclease HI [Vibrio cholerae HC-41A1]
Length = 152
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
+FTDG+C N G GYG+ + TNN E+ A+ AL+ K
Sbjct: 3 IFTDGSCLGNPGPG---GYGIVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQALKEPC 59
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + + V+W +
Sbjct: 60 --RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQ-VEWRW 116
Query: 129 VPGHGNSHGNMKADEMARDAA 149
V GH N DE+AR AA
Sbjct: 117 VKGHAGHRENEMCDELARQAA 137
>gi|290476065|ref|YP_003468962.1| RNase HI [Xenorhabdus bovienii SS-2004]
gi|289175395|emb|CBJ82198.1| RNase HI, degrades RNA of DNA-RNA hybrids [Xenorhabdus bovienii
SS-2004]
Length = 156
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYGV K R TNN E+ AI L+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGVVLRYQQHEKTLSKGYFRTTNNRMELMAAIAGLESLTC 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+KAD PV N + Q L I + + W
Sbjct: 62 PC--NVILTTDSQYVRQGITQWIHNWKKRGWKKADKSPVINVDLWQRLDQAIADHD-IDW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 RWVKGHAGHRENEQCDELARTAA 141
>gi|238799154|ref|ZP_04642607.1| Ribonuclease H [Yersinia mollaretii ATCC 43969]
gi|238716995|gb|EEQ08858.1| Ribonuclease H [Yersinia mollaretii ATCC 43969]
Length = 154
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLT---TNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +V+W
Sbjct: 62 PC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QTHTVQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|335042037|ref|ZP_08535064.1| ribonuclease HI [Methylophaga aminisulfidivorans MP]
gi|333788651|gb|EGL54533.1| ribonuclease HI [Methylophaga aminisulfidivorans MP]
Length = 147
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF---GENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+HV +FTDGAC N G G+GV G+ L+ A K T TNN E+ I L
Sbjct: 2 DHVELFTDGACSGNPGPG---GWGVILRAKGQEKELSGAEKNT---TNNQMEMMAVIAGL 55
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K +V I +DSQ++IK + EW+ W++ W+ A KPV+N E Q L +
Sbjct: 56 EALKRPC--QVTITTDSQYVIKGMTEWLTGWKAKNWKTAVKKPVKNVELWQRLDKAVAPH 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+ VKWE+V GH N +AD++A
Sbjct: 114 Q-VKWEWVRGHQGHVENERADQLA 136
>gi|325925276|ref|ZP_08186680.1| RNase HI [Xanthomonas perforans 91-118]
gi|346723965|ref|YP_004850634.1| ribonuclease H [Xanthomonas axonopodis pv. citrumelo F1]
gi|325544322|gb|EGD15701.1| RNase HI [Xanthomonas perforans 91-118]
gi|346648712|gb|AEO41336.1| ribonuclease H [Xanthomonas axonopodis pv. citrumelo F1]
Length = 150
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q + W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|341886801|gb|EGT42736.1| hypothetical protein CAEBREN_11718 [Caenorhabditis brenneri]
Length = 358
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VFTDG+C GK A AG+GV++G+++P N +GKV G NN AE+ A HA++Q+
Sbjct: 35 TVFTDGSCRNQGKSTAKAGFGVFWGDDHPNNHSGKVDGLQDNNRAELYAACHAIRQSLRL 94
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME---SV 124
++ I SDS+F+ +Q+ + + + +L+ I M V
Sbjct: 95 GYRKIRILSDSEFVRLVIQKPQDFEKKIAY-----------IDYHDLIQSINLMRRSIEV 143
Query: 125 KWEFVPGHGNSHGNMKADEMAR 146
E+V H +GN+KAD +A+
Sbjct: 144 SVEYVKAHSGHYGNVKADGLAK 165
>gi|424795904|ref|ZP_18221709.1| ribonuclease H [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|433679146|ref|ZP_20510921.1| ribonuclease H [Xanthomonas translucens pv. translucens DSM 18974]
gi|422795249|gb|EKU23974.1| ribonuclease H [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|430815733|emb|CCP41472.1| ribonuclease H [Xanthomonas translucens pv. translucens DSM 18974]
Length = 152
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G A Y G VAG TNN E+ AI AL+
Sbjct: 4 VDIHTDGACLGNPGPGGWAALLRYKGLER--EVAG-AEAHTTNNRMELMAAIMALETLSE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ +L E LH Q ++ W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRQWKTAGGDPVKNR-DLWERLHAAAQRHTIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHSGDPDNERVDVLARNQA 140
>gi|56751922|ref|YP_172623.1| ribonuclease H [Synechococcus elongatus PCC 6301]
gi|56686881|dbj|BAD80103.1| ribonuclease H [Synechococcus elongatus PCC 6301]
Length = 261
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 9/149 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D + ++TDGAC N G G + F + + G+ TNN E+Q AI AL+
Sbjct: 5 DAILRLYTDGACTGNPGPGG-WGVQIQFADGTVQELGGRDAA-TTNNRMELQAAIAALEF 62
Query: 64 AKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ ++ V + +DS+++IK + +W+ WQ GW+ A GKPV N Q+L + +
Sbjct: 63 WRDHSDQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLN----QDLWMHLDDLN 118
Query: 123 S--VKWEFVPGHGNSHGNMKADEMARDAA 149
S +W++V GH GN + D++AR A
Sbjct: 119 SPAAQWQYVRGHSGDPGNERCDQIARSFA 147
>gi|282901341|ref|ZP_06309266.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
gi|281193620|gb|EFA68592.1| Ribonuclease H [Cylindrospermopsis raciborskii CS-505]
Length = 306
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 9/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ-AKSA 67
++TDGAC N G G VYF + ++ G+ + TNN EIQ AI AL+ A+S
Sbjct: 10 IYTDGACKGNPGPGG-WGVVVYF-HDGSIHEMGEASDYTTNNQMEIQAAIGALELLAQSG 67
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
++ + + SDS+++I V +W+ W+ GW+K+DG PVQN QELL I ++ + V+
Sbjct: 68 QVEPITLYSDSEYLINSVTKWIHGWKKKGWKKSDGTPVQN----QELLKIIDKLNTKLVR 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHAGNIGNERCDVIARSFAS 148
>gi|398929512|ref|ZP_10663973.1| ribonuclease HI [Pseudomonas sp. GM48]
gi|398166897|gb|EJM54984.1| ribonuclease HI [Pseudomonas sp. GM48]
Length = 150
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + V
Sbjct: 60 KRPC--DVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|378972855|ref|YP_005221459.1| ribonuclease H [Treponema pallidum subsp. pertenue str. SamoaD]
gi|378973922|ref|YP_005222528.1| ribonuclease H [Treponema pallidum subsp. pertenue str. Gauthier]
gi|378974984|ref|YP_005223592.1| ribonuclease H [Treponema pallidum subsp. pallidum DAL-1]
gi|378981831|ref|YP_005230136.1| ribonuclease H [Treponema pallidum subsp. pertenue str. CDC2]
gi|384421876|ref|YP_005631235.1| ribonuclease HI [Treponema pallidum subsp. pallidum str. Chicago]
gi|408502233|ref|YP_006869677.1| ribonuclease H [Treponema pallidum subsp. pallidum str. Mexico A]
gi|291059742|gb|ADD72477.1| ribonuclease HI [Treponema pallidum subsp. pallidum str. Chicago]
gi|374677178|gb|AEZ57471.1| ribonuclease H [Treponema pallidum subsp. pertenue str. SamoaD]
gi|374678248|gb|AEZ58540.1| ribonuclease H [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679317|gb|AEZ59608.1| ribonuclease H [Treponema pallidum subsp. pertenue str. Gauthier]
gi|374680382|gb|AEZ60672.1| ribonuclease H [Treponema pallidum subsp. pallidum DAL-1]
gi|408475596|gb|AFU66361.1| ribonuclease H [Treponema pallidum subsp. pallidum str. Mexico A]
Length = 169
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 1 MDPDNHVVVFTDGACPRN----GKVGASAGYGVYF---GENNPLNVAGKVTGRV---TNN 50
M+ + ++TDGAC N G A V F G+ P A +G TNN
Sbjct: 1 MNAHAALTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQTAPEAAAFTRSGSAYPSTNN 60
Query: 51 NAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
E+ I+AL++A + V + +DSQ++ K + +W+ W+ NGW+ A +PV+NK +
Sbjct: 61 RMELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNK-D 119
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
L E L + SV+W +V GH N D +A DAA
Sbjct: 120 LWEALSALADALSVEWRWVKGHAGDPYNELCDRLATDAA 158
>gi|238790134|ref|ZP_04633911.1| Ribonuclease H [Yersinia frederiksenii ATCC 33641]
gi|238721803|gb|EEQ13466.1| Ribonuclease H [Yersinia frederiksenii ATCC 33641]
Length = 159
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDG+C N G GYG + + ++ AG TNN E+ AI AL+
Sbjct: 9 QVEIFTDGSCLGNPGPG---GYGAILRYKQHEKTFSAGYFL--TTNNRMELMAAIVALEA 63
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
S +V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +
Sbjct: 64 LTSPC--KVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QTHT 120
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+WE+V GH N + DE+AR A
Sbjct: 121 VQWEWVKGHAGHPENERCDELARQGA 146
>gi|187611429|sp|A8F2L0.2|RNH_RICM5 RecName: Full=Ribonuclease H; Short=RNase H
Length = 152
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK- 65
VV++TDGAC N G G+G N+ TNN EI A+ AL+ K
Sbjct: 5 VVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRMLKK 61
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ + ++
Sbjct: 62 SCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-HTII 117
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W++V GH N+ GN+ AD++A
Sbjct: 118 WKWVKGHANNSGNIAADKLA 137
>gi|307132180|ref|YP_003884196.1| ribonuclease HI [Dickeya dadantii 3937]
gi|306529709|gb|ADM99639.1| ribonuclease HI [Dickeya dadantii 3937]
Length = 154
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+ +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSAGYRLT---TNNRMELMAAIVALETLTT 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V I +DSQ++ + + W+ W+ GW+ A+ KPV+N +L + L Q Q ++ W
Sbjct: 62 PC--DVTISTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNV-DLWQRLDQAIQRHTLHW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH N + DE+AR AA
Sbjct: 119 QWVKGHAGHPENERCDELARQAA 141
>gi|253577623|ref|ZP_04854933.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
gi|251842993|gb|EES71031.1| ribonuclease HI [Paenibacillus sp. oral taxon 786 str. D14]
Length = 146
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G ++ G L+ K+T TNN EIQ I AL Q K
Sbjct: 4 VTIYTDGACSGNPGPGGWGAVLMFNGHRKDLSGGEKMT---TNNRMEIQAVISALSQLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + SDS +++ C Q+ W+ W NGW+ + +PV+N++ +EL +G + V+
Sbjct: 61 PC--QVKVYSDSAYVVNCFQQNWIRGWLKNGWKNSKNQPVENRDLWEELWRLMG-IHKVE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N D++AR+A
Sbjct: 118 YIKVKGHSDNELNNYCDQLAREA 140
>gi|427737956|ref|YP_007057500.1| ribonuclease HI [Rivularia sp. PCC 7116]
gi|427372997|gb|AFY56953.1| ribonuclease HI [Rivularia sp. PCC 7116]
Length = 306
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 86/139 (61%), Gaps = 5/139 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDGAC N G G VYF ++ ++ G + + TNN E+Q AI AL+ +S+
Sbjct: 10 IYTDGACTGNPGPGG-WGVVVYF-DDGSIHEIGDASKKTTNNRMEMQAAIAALEFLESSG 67
Query: 69 IDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
++ V + +DS+++I CV +W+ W+ GW+K+DGKPV N ++L E+L + + +KW+
Sbjct: 68 QNKPVTLYTDSEYLINCVTKWVKGWKRKGWKKSDGKPVLN-QDLLEILDNLNN-QKIKWQ 125
Query: 128 FVPGHGNSHGNMKADEMAR 146
V GH + GN + D +AR
Sbjct: 126 HVRGHAGNIGNERCDTIAR 144
>gi|78046645|ref|YP_362820.1| ribonuclease H [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|123771463|sp|Q3BWP3.1|RNH_XANC5 RecName: Full=Ribonuclease H; Short=RNase H
gi|78035075|emb|CAJ22720.1| ribonuclease H [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 150
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q + W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|294627920|ref|ZP_06706499.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|390990699|ref|ZP_10260980.1| RNase H family protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418517015|ref|ZP_13083183.1| ribonuclease H [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418520584|ref|ZP_13086632.1| ribonuclease H [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|292597834|gb|EFF41992.1| ribonuclease H [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|372554552|emb|CCF67955.1| RNase H family protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|410703469|gb|EKQ61960.1| ribonuclease H [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410706228|gb|EKQ64690.1| ribonuclease H [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 150
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q + W
Sbjct: 61 PC--QIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|257483797|ref|ZP_05637838.1| ribonuclease H [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|289627518|ref|ZP_06460472.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289649931|ref|ZP_06481274.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. 2250]
gi|416015397|ref|ZP_11563010.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. B076]
gi|416028198|ref|ZP_11571254.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. race 4]
gi|422583530|ref|ZP_16658653.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422595350|ref|ZP_16669638.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422683358|ref|ZP_16741619.1| ribonuclease H [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|298159284|gb|EFI00342.1| Ribonuclease HI [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|320325375|gb|EFW81442.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. B076]
gi|320327640|gb|EFW83648.1| ribonuclease H [Pseudomonas syringae pv. glycinea str. race 4]
gi|330868360|gb|EGH03069.1| ribonuclease H [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330985655|gb|EGH83758.1| ribonuclease H [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331012693|gb|EGH92749.1| ribonuclease H [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 149
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|444430113|ref|ZP_21225292.1| ribonuclease H [Gordonia soli NBRC 108243]
gi|443889118|dbj|GAC67013.1| ribonuclease H [Gordonia soli NBRC 108243]
Length = 163
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 2 DP-DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
DP D+ V + TDGAC N G Y G+ ++ + T TNN E+ AI A
Sbjct: 11 DPADDLVEISTDGACLGNPGPGGWGAVLRYRGKEKEISGSDPQT---TNNKMELTAAIEA 67
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L + V + +DS ++ + +W+ WQSNGW+ D KPV+N + Q LL + +
Sbjct: 68 LAALNRPST--VILYTDSSYVRNGIMKWVAGWQSNGWQTRDKKPVKNVDLWQRLLEE-EK 124
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAA 149
+V+W +V GH H N AD +A AA
Sbjct: 125 RHTVEWRWVKGHAGDHYNEIADTLATSAA 153
>gi|422606329|ref|ZP_16678339.1| ribonuclease H [Pseudomonas syringae pv. mori str. 301020]
gi|330889981|gb|EGH22642.1| ribonuclease H [Pseudomonas syringae pv. mori str. 301020]
Length = 149
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSR-HNV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|294084677|ref|YP_003551435.1| ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664250|gb|ADE39351.1| ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
Length = 145
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDG+C N G A + G L +G V TNN E+Q AI L
Sbjct: 5 VTIHTDGSCLSNPGPGGWAAILNWRGTEKEL--SGSV-ADTTNNRMELQAAIEGLNALSR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DS++++ V +WM +W++NGWR A KPV N ++L E L Q + W
Sbjct: 62 PM--QVELHTDSKYVMNGVTDWMARWKANGWRTAAKKPVAN-QDLWEQLDAATQRHQITW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH + N + D +AR AA
Sbjct: 119 HWVKGHAGNELNERCDVLARSAA 141
>gi|343496842|ref|ZP_08734929.1| ribonuclease H [Vibrio nigripulchritudo ATCC 27043]
gi|342820635|gb|EGU55454.1| ribonuclease H [Vibrio nigripulchritudo ATCC 27043]
Length = 154
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V VFTDG+C N G GYG+ K + TNN E+ A+ AL K
Sbjct: 5 VEVFTDGSCLGNPGPG---GYGIVLRYKENEKYLSKGYQQTTNNRMEMMAAVVALSTLKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + E ++W
Sbjct: 62 PC--HVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETERHE-IEW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+AR AA
Sbjct: 119 HWVKGHAGHRENEICDELARTAA 141
>gi|262276818|ref|ZP_06054611.1| ribonuclease HI [alpha proteobacterium HIMB114]
gi|262223921|gb|EEY74380.1| ribonuclease HI [alpha proteobacterium HIMB114]
Length = 139
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ ++TDGAC N G G+ + + TNN E+ I ALK K
Sbjct: 2 IKIYTDGACSGNPGRG---GWAAIILDGEKIEKISGSKDNTTNNRMELTAVISALKYVKG 58
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+++ I +DS++ +++W+ W+ NGW+ A+ + V+NK +L + L Q+ ++V+W
Sbjct: 59 KDLE---IYTDSKYTKDGIEKWISNWKKNGWKTANKQDVKNK-DLWDELDQLNSEKNVQW 114
Query: 127 EFVPGHGNSHGNMKADEMAR 146
+V GH N+ N ADE+AR
Sbjct: 115 NWVKGHANNQYNNMADELAR 134
>gi|50543706|ref|XP_500019.1| YALI0A12683p [Yarrowia lipolytica]
gi|49645884|emb|CAG83948.1| YALI0A12683p [Yarrowia lipolytica CLIB122]
Length = 276
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA- 67
V+ DGA RNG+ G AG GV+FG NP+NV+ + G + + + AI +A +
Sbjct: 149 VYVDGAYARNGQGGPQAGVGVWFGRCNPMNVSEPLAGPIQTSQRAVLAAILKAYEAIATM 208
Query: 68 -NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
N + I ++S + I C+ +W WQ+NGW +DG PV NK+ ++ +L
Sbjct: 209 NNGLQYEIYTESTYAIDCLTKWHQMWQNNGWVNSDGDPVSNKDLIESIL 257
>gi|304311304|ref|YP_003810902.1| ribonuclease H1 [gamma proteobacterium HdN1]
gi|301797037|emb|CBL45250.1| Ribonuclease H1 [gamma proteobacterium HdN1]
Length = 153
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G G+G TNN E+ AI ALK
Sbjct: 2 DSVEIFTDGACKGNPGPG---GWGAVLRAGRHEKSLNGYEQHTTNNRMELMAAIEALKAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V I +DSQ++ K + EW+ W+ W+ A G+PV+N ++L L Q +
Sbjct: 59 KRPC--KVRITTDSQYLRKGITEWIHGWKRKSWKTASGQPVKN-DDLWRSLDAETQRHLI 115
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
+W++V GH N +AD++A DA
Sbjct: 116 EWDWVKGHAGHPENERADQLANDA 139
>gi|74317681|ref|YP_315421.1| ribonuclease HI [Thiobacillus denitrificans ATCC 25259]
gi|123745452|sp|Q3SIB2.1|RNH_THIDA RecName: Full=Ribonuclease H; Short=RNase H
gi|74057176|gb|AAZ97616.1| ribonuclease HI [Thiobacillus denitrificans ATCC 25259]
Length = 148
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ +++DGAC N G V G ++ T TNN E+ I AL+ K
Sbjct: 6 IYIYSDGACKGNPGAGGWGALLVAGGHRKEISGGEPNT---TNNRMEMTAVIRALELLKR 62
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DSQ++ K V EW+P W+ WR ADGKPV+N++ Q+ L + Q + W
Sbjct: 63 PST--VEVHTDSQYVQKGVSEWLPGWKRRNWRTADGKPVKNQDLWQQ-LDALSQQHRIVW 119
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH N +AD +A
Sbjct: 120 KWVRGHAGHPENERADVLA 138
>gi|317490807|ref|ZP_07949243.1| RNase H [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920354|gb|EFV41677.1| RNase H [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 156
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y L+ +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQHEKTLSAGYYLT---TNNRMELMAAIVALETLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+C SDSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q ++
Sbjct: 61 DPCSVILC--SDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QSHKIE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W ++ GH N + DE+AR AAG
Sbjct: 118 WVWIKGHAGHIENERCDELARAAAG 142
>gi|398888520|ref|ZP_10642814.1| ribonuclease HI [Pseudomonas sp. GM55]
gi|398190671|gb|EJM77889.1| ribonuclease HI [Pseudomonas sp. GM55]
Length = 150
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + V
Sbjct: 60 KRPC--DVLLVTDSQYVMKGINEWMDNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 117 TWKWVRGHIGHHGNERADQLA 137
>gi|366087115|ref|ZP_09453600.1| ribonuclease HI [Lactobacillus zeae KCTC 3804]
Length = 160
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV------------YFGENNPLNVAGKVTGRVTNNNAEI 54
+V++TDG N G AG V +GE + G GR TNN EI
Sbjct: 5 IVLYTDGG---NRNTGNHAGGSVRPTDKSAWAALLIYGEYEKMLSEGDY-GR-TNNYMEI 59
Query: 55 QGAIHALKQAKSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQE 113
I LK K +I V + SDS ++I +Q+ W KWQ NGWR GKPV+N E Q
Sbjct: 60 MAVIQGLKAIKRTDIP-VDVYSDSAYVINTMQQRWWVKWQQNGWRN-HGKPVKNAELWQA 117
Query: 114 LLHQIGQMESVKWEFVPGHGNSHGNMKADE 143
LLHQ+ + + V + V GH +H N + DE
Sbjct: 118 LLHQVNRFDHVTFHKVKGHATNHNNNRVDE 147
>gi|37524934|ref|NP_928278.1| ribonuclease HI (RNase HI) (ribonuclease H) (RNaseH) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81834060|sp|Q7N807.1|RNH_PHOLL RecName: Full=Ribonuclease H; Short=RNase H
gi|36784360|emb|CAE13237.1| ribonuclease HI (RNase HI) (Ribonuclease H) (RNaseH) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 156
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYGV + TNN E+ AI L+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGVLLRYQQHEKTLSEGFYHTTNNRMELMAAIIGLETLTR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
++ + +DSQ++ + + +W+ W+ GWRKAD PV N + Q L I + ++ W
Sbjct: 62 PC--KIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISR-HNIDW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH N + DE+AR AA
Sbjct: 119 QWVKGHAGHDENERCDELARAAA 141
>gi|404399570|ref|ZP_10991154.1| ribonuclease H [Pseudomonas fuscovaginae UPB0736]
Length = 150
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELMGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVLLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVNR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWKWVRGHIGHPGNERADQLA 137
>gi|58580664|ref|YP_199680.1| ribonuclease H [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84622597|ref|YP_449969.1| ribonuclease H [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188578362|ref|YP_001915291.1| ribonuclease H [Xanthomonas oryzae pv. oryzae PXO99A]
gi|384418142|ref|YP_005627502.1| RNase H [Xanthomonas oryzae pv. oryzicola BLS256]
gi|81311959|sp|Q5H426.1|RNH_XANOR RecName: Full=Ribonuclease H; Short=RNase H
gi|123739173|sp|Q2P6Y2.1|RNH_XANOM RecName: Full=Ribonuclease H; Short=RNase H
gi|58425258|gb|AAW74295.1| ribonuclease H [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84366537|dbj|BAE67695.1| Ribonuclease H [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522814|gb|ACD60759.1| RNase H [Xanthomonas oryzae pv. oryzae PXO99A]
gi|353461056|gb|AEQ95335.1| RNase H [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 150
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V TDG+C N G A Y G L V+ TNN E+ AI AL+
Sbjct: 4 IEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVS---TNNRMELMAAIMALETLTE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ + +DSQ++ + + EWMP W W+ A G PV+N+ EL E LH Q + W
Sbjct: 61 PC--EIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR-ELWERLHAATQRHRIDW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + D +AR+ A
Sbjct: 118 RWVKGHNGDPDNERVDVLARNQA 140
>gi|88703293|ref|ZP_01101009.1| Ribonuclease HI [Congregibacter litoralis KT71]
gi|88702007|gb|EAQ99110.1| Ribonuclease HI [Congregibacter litoralis KT71]
Length = 145
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G VY + L T TNN E+ AI L
Sbjct: 3 RVDLFTDGACRGNPGPGGWGALLVYGSKERELYGGAADT---TNNRMELSAAIEGL---- 55
Query: 66 SANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A I C + +DS +++K + EW+P W+ GW+ A KPV N + Q L + +
Sbjct: 56 -AAISEPCAVKLVTDSTYVMKGITEWLPNWKRRGWKTAAKKPVANADLWQRLEAEC-ERH 113
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDA 148
S++WE+V GH GN +AD +A A
Sbjct: 114 SIEWEWVKGHSGHPGNERADALANKA 139
>gi|425701527|gb|AFX92689.1| putative ribonuclease H protein [Megavirus courdo11]
Length = 175
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKSANIDRVCIK---SDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
A+K S + CI +DSQ+ I C+ +W+P W N WR + V N+E + E ++
Sbjct: 67 AIKYVHSEIGLQNCILNIFTDSQYSINCITKWVPAWIKNNWRTKNNTAVANREFI-EPIY 125
Query: 117 QIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
+ ++ + V H +S N KAD +A A
Sbjct: 126 RYYNKYNINFTHVDAHTGRDDYDSIANAKADYLATKAT 163
>gi|51894058|ref|YP_076749.1| ribonuclease H [Symbiobacterium thermophilum IAM 14863]
gi|81826015|sp|Q67K93.1|RNH_SYMTH RecName: Full=Ribonuclease H; Short=RNase H
gi|51857747|dbj|BAD41905.1| ribonuclease H [Symbiobacterium thermophilum IAM 14863]
Length = 147
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+++TDGAC P G GA YG + E + + TNN EIQ AI AL+
Sbjct: 4 VIIYTDGACSGNPGPGGWGAVLLYGSHRKELSGFH------PHTTNNRMEIQAAIEALRA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K +V + SDS +++ Q W+ WQ NGW + +PV+N++ QELL + +
Sbjct: 58 LKYPC--KVKLYSDSAYLVNAFRQNWLRTWQRNGWVNSRKQPVENQDLWQELL-EAARPH 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDA 148
V+W V GH + N + DE+AR A
Sbjct: 115 QVEWLKVQGHADVAENNRCDELARAA 140
>gi|340384228|ref|XP_003390616.1| PREDICTED: ribonuclease H-like [Amphimedon queenslandica]
Length = 167
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G Y ++ A T TNN E+ AI AL+
Sbjct: 6 DRVEIFTDGACRGNPGPGGWGAVLRYKAHEKEISGAESPT---TNNRMEMMAAIKALESL 62
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ + RV I +DS ++ + W+ W+ WR AD K V+N +L + L ++ +
Sbjct: 63 RRPS--RVRISTDSTYLKNGITRWIADWKRRNWRTADRKEVKNV-DLWQRLERVAADHEI 119
Query: 125 KWEFVPGHGNSHGNMKADEMARDAAG 150
+W +V GH GN +AD +AR+A G
Sbjct: 120 EWVWVKGHAGHEGNERADALAREAIG 145
>gi|114570767|ref|YP_757447.1| RNase HI [Maricaulis maris MCS10]
gi|122315489|sp|Q0AMI4.1|RNH_MARMM RecName: Full=Ribonuclease H; Short=RNase H
gi|114341229|gb|ABI66509.1| RNase HI [Maricaulis maris MCS10]
Length = 149
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ + TDGAC N G G+G N TNN E+ AI AL+ +
Sbjct: 4 ITIHTDGACSGNPGPG---GWGAILEWNGHRKELKGGEADTTNNRMEMMAAIQALEALRK 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A+ + I +DS ++ + +W+ W+ GW+ AD KPV+N +L + L ++ + ++ W
Sbjct: 61 ADRSVILI-TDSVYLRDGITKWIHGWKKRGWKTADKKPVKNV-DLWQRLDELTRSHTIDW 118
Query: 127 EFVPGHGNSHGNMKADEMARD 147
+V GH GN +ADE+AR+
Sbjct: 119 RWVKGHAGDPGNERADELARE 139
>gi|170758946|ref|YP_001785742.1| ribonuclease H [Clostridium botulinum A3 str. Loch Maree]
gi|169405935|gb|ACA54346.1| ribonuclease HI [Clostridium botulinum A3 str. Loch Maree]
Length = 149
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFKDTTNNIMELSAVVEALSLLKE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 SC--SVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|308049180|ref|YP_003912746.1| RNase HI [Ferrimonas balearica DSM 9799]
gi|307631370|gb|ADN75672.1| RNase HI [Ferrimonas balearica DSM 9799]
Length = 156
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M V ++TDG+C N G GYG+ G TNN E+ A+
Sbjct: 1 MAEKKRVTLYTDGSCLGNPGPG---GYGIVLIYKRHRKEVGYGYQHTTNNRMEMMAALQG 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A +V + +DSQ++ + + +W+ W+ NGW+ A +PV+N + Q L Q+ +
Sbjct: 58 L--ALLTEPCQVSLYTDSQYLRQGITQWIHGWKRNGWKTAAKEPVKNVDLWQALDAQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMARDAAG 150
E + W +V GH N + DE+AR AAG
Sbjct: 116 HE-IDWHWVKGHAGDPNNERCDELARTAAG 144
>gi|22126971|ref|NP_670394.1| ribonuclease H [Yersinia pestis KIM10+]
gi|45442536|ref|NP_994075.1| ribonuclease H [Yersinia pestis biovar Microtus str. 91001]
gi|51597280|ref|YP_071471.1| ribonuclease H [Yersinia pseudotuberculosis IP 32953]
gi|108806556|ref|YP_650472.1| ribonuclease H [Yersinia pestis Antiqua]
gi|108813077|ref|YP_648844.1| ribonuclease H [Yersinia pestis Nepal516]
gi|145598913|ref|YP_001162989.1| ribonuclease H [Yersinia pestis Pestoides F]
gi|149366916|ref|ZP_01888950.1| ribonuclease HI [Yersinia pestis CA88-4125]
gi|153949812|ref|YP_001400035.1| ribonuclease H [Yersinia pseudotuberculosis IP 31758]
gi|162419608|ref|YP_001607084.1| ribonuclease H [Yersinia pestis Angola]
gi|165924761|ref|ZP_02220593.1| RNase H [Yersinia pestis biovar Orientalis str. F1991016]
gi|165938296|ref|ZP_02226854.1| RNase H [Yersinia pestis biovar Orientalis str. IP275]
gi|166011974|ref|ZP_02232872.1| RNase H [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211295|ref|ZP_02237330.1| RNase H [Yersinia pestis biovar Antiqua str. B42003004]
gi|167399933|ref|ZP_02305451.1| RNase H [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419598|ref|ZP_02311351.1| RNase H [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167423920|ref|ZP_02315673.1| RNase H [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|170023354|ref|YP_001719859.1| ribonuclease H [Yersinia pseudotuberculosis YPIII]
gi|186896385|ref|YP_001873497.1| ribonuclease H [Yersinia pseudotuberculosis PB1/+]
gi|218928250|ref|YP_002346125.1| ribonuclease H [Yersinia pestis CO92]
gi|229841012|ref|ZP_04461171.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843117|ref|ZP_04463263.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. India 195]
gi|229895465|ref|ZP_04510637.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Pestoides A]
gi|229903520|ref|ZP_04518633.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Nepal516]
gi|270487301|ref|ZP_06204375.1| ribonuclease HI [Yersinia pestis KIM D27]
gi|294503097|ref|YP_003567159.1| ribonuclease H [Yersinia pestis Z176003]
gi|384121538|ref|YP_005504158.1| ribonuclease H [Yersinia pestis D106004]
gi|384125713|ref|YP_005508327.1| ribonuclease H [Yersinia pestis D182038]
gi|384141051|ref|YP_005523753.1| ribonuclease H [Yersinia pestis A1122]
gi|384413713|ref|YP_005623075.1| ribonuclease H [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420545705|ref|ZP_15043778.1| RNase H family protein [Yersinia pestis PY-01]
gi|420551014|ref|ZP_15048529.1| RNase H family protein [Yersinia pestis PY-02]
gi|420562112|ref|ZP_15058302.1| RNase H family protein [Yersinia pestis PY-04]
gi|420567136|ref|ZP_15062841.1| RNase H family protein [Yersinia pestis PY-05]
gi|420572789|ref|ZP_15067975.1| RNase H family protein [Yersinia pestis PY-06]
gi|420578123|ref|ZP_15072803.1| RNase H family protein [Yersinia pestis PY-07]
gi|420588618|ref|ZP_15082306.1| RNase H family protein [Yersinia pestis PY-09]
gi|420599621|ref|ZP_15092182.1| RNase H family protein [Yersinia pestis PY-11]
gi|420605097|ref|ZP_15097078.1| RNase H family protein [Yersinia pestis PY-12]
gi|420615756|ref|ZP_15106619.1| RNase H family protein [Yersinia pestis PY-14]
gi|420621150|ref|ZP_15111371.1| RNase H family protein [Yersinia pestis PY-15]
gi|420626213|ref|ZP_15115958.1| RNase H family protein [Yersinia pestis PY-16]
gi|420631403|ref|ZP_15120654.1| RNase H family protein [Yersinia pestis PY-19]
gi|420642091|ref|ZP_15130265.1| RNase H family protein [Yersinia pestis PY-29]
gi|420647229|ref|ZP_15134969.1| RNase H family protein [Yersinia pestis PY-32]
gi|420652883|ref|ZP_15140042.1| RNase H family protein [Yersinia pestis PY-34]
gi|420658391|ref|ZP_15144998.1| RNase H family protein [Yersinia pestis PY-36]
gi|420663712|ref|ZP_15149754.1| RNase H family protein [Yersinia pestis PY-42]
gi|420668689|ref|ZP_15154265.1| RNase H family protein [Yersinia pestis PY-45]
gi|420673990|ref|ZP_15159089.1| RNase H family protein [Yersinia pestis PY-46]
gi|420679536|ref|ZP_15164120.1| RNase H family protein [Yersinia pestis PY-47]
gi|420684790|ref|ZP_15168825.1| RNase H family protein [Yersinia pestis PY-48]
gi|420689955|ref|ZP_15173405.1| RNase H family protein [Yersinia pestis PY-52]
gi|420695760|ref|ZP_15178487.1| RNase H family protein [Yersinia pestis PY-53]
gi|420701143|ref|ZP_15183094.1| RNase H family protein [Yersinia pestis PY-54]
gi|420707147|ref|ZP_15187968.1| RNase H family protein [Yersinia pestis PY-55]
gi|420712466|ref|ZP_15192764.1| RNase H family protein [Yersinia pestis PY-56]
gi|420723471|ref|ZP_15202316.1| RNase H family protein [Yersinia pestis PY-59]
gi|420729087|ref|ZP_15207329.1| RNase H family protein [Yersinia pestis PY-60]
gi|420734147|ref|ZP_15211896.1| RNase H family protein [Yersinia pestis PY-61]
gi|420739620|ref|ZP_15216827.1| RNase H family protein [Yersinia pestis PY-63]
gi|420750745|ref|ZP_15226476.1| RNase H family protein [Yersinia pestis PY-65]
gi|420756013|ref|ZP_15231052.1| RNase H family protein [Yersinia pestis PY-66]
gi|420761861|ref|ZP_15235821.1| RNase H family protein [Yersinia pestis PY-71]
gi|420767104|ref|ZP_15240553.1| RNase H family protein [Yersinia pestis PY-72]
gi|420783039|ref|ZP_15254714.1| RNase H family protein [Yersinia pestis PY-89]
gi|420788387|ref|ZP_15259427.1| RNase H family protein [Yersinia pestis PY-90]
gi|420793863|ref|ZP_15264369.1| RNase H family protein [Yersinia pestis PY-91]
gi|420798980|ref|ZP_15268973.1| RNase H family protein [Yersinia pestis PY-92]
gi|420804329|ref|ZP_15273784.1| RNase H family protein [Yersinia pestis PY-93]
gi|420809576|ref|ZP_15278539.1| RNase H family protein [Yersinia pestis PY-94]
gi|420815287|ref|ZP_15283656.1| RNase H family protein [Yersinia pestis PY-95]
gi|420820456|ref|ZP_15288336.1| RNase H family protein [Yersinia pestis PY-96]
gi|420825554|ref|ZP_15292891.1| RNase H family protein [Yersinia pestis PY-98]
gi|420831324|ref|ZP_15298110.1| RNase H family protein [Yersinia pestis PY-99]
gi|420836177|ref|ZP_15302484.1| RNase H family protein [Yersinia pestis PY-100]
gi|420841317|ref|ZP_15307142.1| RNase H family protein [Yersinia pestis PY-101]
gi|420846938|ref|ZP_15312215.1| RNase H family protein [Yersinia pestis PY-102]
gi|420852353|ref|ZP_15316987.1| RNase H family protein [Yersinia pestis PY-103]
gi|420857870|ref|ZP_15321677.1| RNase H family protein [Yersinia pestis PY-113]
gi|421762532|ref|ZP_16199329.1| ribonuclease H [Yersinia pestis INS]
gi|21362886|sp|Q8ZH30.1|RNH_YERPE RecName: Full=Ribonuclease HI; Short=RNase HI
gi|81825740|sp|Q667M7.1|RNH_YERPS RecName: Full=Ribonuclease H; Short=RNase H
gi|122979768|sp|Q1CAJ5.1|RNH_YERPA RecName: Full=Ribonuclease H; Short=RNase H
gi|122980009|sp|Q1CFI6.1|RNH_YERPN RecName: Full=Ribonuclease H; Short=RNase H
gi|189043723|sp|A7FFK7.1|RNH_YERP3 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043724|sp|A4TL54.1|RNH_YERPP RecName: Full=Ribonuclease H; Short=RNase H
gi|238687260|sp|A9R0G0.1|RNH_YERPG RecName: Full=Ribonuclease H; Short=RNase H
gi|238688496|sp|B1JR46.1|RNH_YERPY RecName: Full=Ribonuclease H; Short=RNase H
gi|238691454|sp|B2KAC9.1|RNH_YERPB RecName: Full=Ribonuclease H; Short=RNase H
gi|21960014|gb|AAM86645.1|AE013910_7 RNase HI [Yersinia pestis KIM10+]
gi|45437401|gb|AAS62952.1| ribonuclease HI [Yersinia pestis biovar Microtus str. 91001]
gi|51590562|emb|CAH22203.1| ribonuclease HI [Yersinia pseudotuberculosis IP 32953]
gi|108776725|gb|ABG19244.1| RNase HI [Yersinia pestis Nepal516]
gi|108778469|gb|ABG12527.1| RNase HI [Yersinia pestis Antiqua]
gi|115346861|emb|CAL19747.1| ribonuclease HI [Yersinia pestis CO92]
gi|145210609|gb|ABP40016.1| RNase HI [Yersinia pestis Pestoides F]
gi|149291290|gb|EDM41365.1| ribonuclease HI [Yersinia pestis CA88-4125]
gi|152961307|gb|ABS48768.1| RNase H [Yersinia pseudotuberculosis IP 31758]
gi|162352423|gb|ABX86371.1| RNase H [Yersinia pestis Angola]
gi|165913674|gb|EDR32293.1| RNase H [Yersinia pestis biovar Orientalis str. IP275]
gi|165923821|gb|EDR40953.1| RNase H [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989141|gb|EDR41442.1| RNase H [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207066|gb|EDR51546.1| RNase H [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962339|gb|EDR58360.1| RNase H [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167050641|gb|EDR62049.1| RNase H [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167056769|gb|EDR66532.1| RNase H [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169749888|gb|ACA67406.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII]
gi|186699411|gb|ACC90040.1| ribonuclease H [Yersinia pseudotuberculosis PB1/+]
gi|229679290|gb|EEO75393.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Nepal516]
gi|229689464|gb|EEO81525.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. India 195]
gi|229697378|gb|EEO87425.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701620|gb|EEO89647.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Yersinia pestis
Pestoides A]
gi|262361134|gb|ACY57855.1| ribonuclease H [Yersinia pestis D106004]
gi|262365377|gb|ACY61934.1| ribonuclease H [Yersinia pestis D182038]
gi|270335805|gb|EFA46582.1| ribonuclease HI [Yersinia pestis KIM D27]
gi|294353556|gb|ADE63897.1| ribonuclease H [Yersinia pestis Z176003]
gi|320014217|gb|ADV97788.1| ribonuclease H [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342856180|gb|AEL74733.1| ribonuclease H [Yersinia pestis A1122]
gi|391429918|gb|EIQ91712.1| RNase H family protein [Yersinia pestis PY-01]
gi|391431022|gb|EIQ92653.1| RNase H family protein [Yersinia pestis PY-02]
gi|391446030|gb|EIR06107.1| RNase H family protein [Yersinia pestis PY-04]
gi|391446663|gb|EIR06685.1| RNase H family protein [Yersinia pestis PY-05]
gi|391450639|gb|EIR10253.1| RNase H family protein [Yersinia pestis PY-06]
gi|391462200|gb|EIR20740.1| RNase H family protein [Yersinia pestis PY-07]
gi|391465487|gb|EIR23680.1| RNase H family protein [Yersinia pestis PY-09]
gi|391479986|gb|EIR36707.1| RNase H family protein [Yersinia pestis PY-11]
gi|391480187|gb|EIR36886.1| RNase H family protein [Yersinia pestis PY-12]
gi|391495274|gb|EIR50390.1| RNase H family protein [Yersinia pestis PY-15]
gi|391498088|gb|EIR52884.1| RNase H family protein [Yersinia pestis PY-14]
gi|391510046|gb|EIR63618.1| RNase H family protein [Yersinia pestis PY-16]
gi|391510859|gb|EIR64338.1| RNase H family protein [Yersinia pestis PY-19]
gi|391525570|gb|EIR77701.1| RNase H family protein [Yersinia pestis PY-29]
gi|391528367|gb|EIR80191.1| RNase H family protein [Yersinia pestis PY-34]
gi|391529362|gb|EIR81064.1| RNase H family protein [Yersinia pestis PY-32]
gi|391542101|gb|EIR92592.1| RNase H family protein [Yersinia pestis PY-36]
gi|391543882|gb|EIR94165.1| RNase H family protein [Yersinia pestis PY-42]
gi|391544840|gb|EIR95002.1| RNase H family protein [Yersinia pestis PY-45]
gi|391558964|gb|EIS07798.1| RNase H family protein [Yersinia pestis PY-46]
gi|391559577|gb|EIS08330.1| RNase H family protein [Yersinia pestis PY-47]
gi|391560916|gb|EIS09504.1| RNase H family protein [Yersinia pestis PY-48]
gi|391574188|gb|EIS21129.1| RNase H family protein [Yersinia pestis PY-52]
gi|391574794|gb|EIS21630.1| RNase H family protein [Yersinia pestis PY-53]
gi|391586499|gb|EIS31794.1| RNase H family protein [Yersinia pestis PY-55]
gi|391587115|gb|EIS32329.1| RNase H family protein [Yersinia pestis PY-54]
gi|391590074|gb|EIS34878.1| RNase H family protein [Yersinia pestis PY-56]
gi|391603477|gb|EIS46660.1| RNase H family protein [Yersinia pestis PY-60]
gi|391605021|gb|EIS47956.1| RNase H family protein [Yersinia pestis PY-59]
gi|391617846|gb|EIS59350.1| RNase H family protein [Yersinia pestis PY-61]
gi|391618475|gb|EIS59897.1| RNase H family protein [Yersinia pestis PY-63]
gi|391629537|gb|EIS69456.1| RNase H family protein [Yersinia pestis PY-65]
gi|391640935|gb|EIS79421.1| RNase H family protein [Yersinia pestis PY-71]
gi|391643524|gb|EIS81685.1| RNase H family protein [Yersinia pestis PY-72]
gi|391643592|gb|EIS81748.1| RNase H family protein [Yersinia pestis PY-66]
gi|391663862|gb|EIS99658.1| RNase H family protein [Yersinia pestis PY-89]
gi|391665957|gb|EIT01486.1| RNase H family protein [Yersinia pestis PY-90]
gi|391671984|gb|EIT06872.1| RNase H family protein [Yersinia pestis PY-91]
gi|391684098|gb|EIT17817.1| RNase H family protein [Yersinia pestis PY-93]
gi|391685496|gb|EIT19030.1| RNase H family protein [Yersinia pestis PY-92]
gi|391686389|gb|EIT19817.1| RNase H family protein [Yersinia pestis PY-94]
gi|391698105|gb|EIT30443.1| RNase H family protein [Yersinia pestis PY-95]
gi|391701742|gb|EIT33706.1| RNase H family protein [Yersinia pestis PY-96]
gi|391702752|gb|EIT34604.1| RNase H family protein [Yersinia pestis PY-98]
gi|391712275|gb|EIT43171.1| RNase H family protein [Yersinia pestis PY-99]
gi|391718633|gb|EIT48863.1| RNase H family protein [Yersinia pestis PY-100]
gi|391718999|gb|EIT49187.1| RNase H family protein [Yersinia pestis PY-101]
gi|391729837|gb|EIT58786.1| RNase H family protein [Yersinia pestis PY-102]
gi|391732798|gb|EIT61320.1| RNase H family protein [Yersinia pestis PY-103]
gi|391736442|gb|EIT64467.1| RNase H family protein [Yersinia pestis PY-113]
gi|411176738|gb|EKS46753.1| ribonuclease H [Yersinia pestis INS]
Length = 154
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q +++W
Sbjct: 62 PC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAI-QSHTIQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|93005683|ref|YP_580120.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis
K5]
gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
K5]
Length = 532
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +TDGAC N G G+G + F + + G TNN E+ GAI AL
Sbjct: 27 TVAYTDGACKGNPGAG---GWGAHLIFSDGRTQDFYGG-DKETTNNRMELMGAIQALTH- 81
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
S++ ++ I +DS ++ K + EW+ W+ GW+ A KPV N ++L + L ++ Q V
Sbjct: 82 -SSHEQKLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKPVAN-QDLWQRLDELCQKRDV 139
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN KADE+A
Sbjct: 140 DWHWVKGHAGHAGNEKADELA 160
>gi|254514368|ref|ZP_05126429.1| ribonuclease HI [gamma proteobacterium NOR5-3]
gi|219676611|gb|EED32976.1| ribonuclease HI [gamma proteobacterium NOR5-3]
Length = 145
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+V +FTDGAC N G Y G+ + A T TNN E+ AI L
Sbjct: 3 NVELFTDGACRGNPGPGGWGALLCYAGKEREVYGAEPNT---TNNRMELSAAIEGLAALS 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
R+ +DS +++K + EW+P W+ GW+ + KPV N +L +LL Q V
Sbjct: 60 EPCAVRLV--TDSTYVMKGITEWLPNWKRRGWKTSAKKPVANA-DLWQLLEVQNQRHKVS 116
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
WE+V GH GN +AD +A A
Sbjct: 117 WEWVKGHSGHPGNERADALANRA 139
>gi|148244507|ref|YP_001219201.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
gi|187611402|sp|A5CX29.1|RNH_VESOH RecName: Full=Ribonuclease H; Short=RNase H
gi|146326334|dbj|BAF61477.1| ribonuclease H [Candidatus Vesicomyosocius okutanii HA]
Length = 148
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N +V++TDG C N +G G+GV+ + + TNN E+ I AL++
Sbjct: 3 NRIVIYTDGGCRCNTGIG---GWGVWLKYGDYDKKLKGNEKKTTNNRMELTATIKALEEI 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS I + + +DS+++I + EWM W+ W + +PV+N +L + L + + V
Sbjct: 60 KSNQIG-IDLFTDSKYVITGINEWMKNWKVKNWETSKKRPVKN-VDLWQRLDVLNKQHDV 117
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V H N+ GN ADE+A
Sbjct: 118 IWYWVKSHSNNKGNDIADELA 138
>gi|402699085|ref|ZP_10847064.1| ribonuclease H [Pseudomonas fragi A22]
Length = 150
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L T TNN E+ AI L++
Sbjct: 3 DSVEMFTDGACKGNPGPGGWGALLVCQGVEKELWGGEPAT---TNNRMELMAAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N +L +LL + +V
Sbjct: 60 KRPC--EVLLVTDSQYVMKGITEWMVNWKKRGWKTAAKEPVKNA-DLWKLLDEQVNRHTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH +GN +AD++A
Sbjct: 117 KWQWVRGHIGHYGNERADQLA 137
>gi|379713470|ref|YP_005301808.1| ribonuclease H [Rickettsia massiliae str. AZT80]
gi|376334116|gb|AFB31348.1| ribonuclease H [Rickettsia massiliae str. AZT80]
Length = 155
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK-QAK 65
VV++TDGAC N G G+G N+ TNN EI A+ AL+ K
Sbjct: 8 VVIYTDGACAGNPGPG---GWGALLQFNDTSKEVFGYELDTTNNRMEITAALEALRILKK 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
S NI+ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ + ++
Sbjct: 65 SCNIE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-HTII 120
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W++V GH N+ GN+ AD++A
Sbjct: 121 WKWVKGHANNSGNIAADKLA 140
>gi|331007395|ref|ZP_08330581.1| Ribonuclease HI [gamma proteobacterium IMCC1989]
gi|330418803|gb|EGG93283.1| Ribonuclease HI [gamma proteobacterium IMCC1989]
Length = 142
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +F+DGAC N G Y PL K T TNN E+ AI L+ K
Sbjct: 4 VEIFSDGACKGNPGPGGWGALLRYGDTEKPLCGGEKNT---TNNRMELMAAIEGLRSLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + +DSQ++ K + EW+ W+ NGW+ A KPV+N + Q+L ++ + +V W
Sbjct: 61 AC--EVELTTDSQYVRKGITEWIKNWKKNGWKTAAKKPVKNADLWQQLDDEVTR-HTVNW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N ADE+A
Sbjct: 118 HWVKGHSGHRENEIADELA 136
>gi|338999478|ref|ZP_08638121.1| ribonuclease H [Halomonas sp. TD01]
gi|338763627|gb|EGP18616.1| ribonuclease H [Halomonas sp. TD01]
Length = 159
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V V+TDGAC N G G+GV TNN E+ AI AL+
Sbjct: 12 VTVYTDGACRGNPGPG---GWGVVLSSGQHEKTLKGYEAETTNNRMELMAAIMALRTLNK 68
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W GW+ A +PV+N E L + LH+ Q V+W
Sbjct: 69 PC--EVALWTDSQYVRQGITQWIHNWIKRGWKTAAKQPVKNAE-LWKTLHEETQRHRVEW 125
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH GN +AD +A +A
Sbjct: 126 HWVKGHSGHPGNERADALANEA 147
>gi|15639344|ref|NP_218793.1| ribonuclease H (rnhA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025586|ref|YP_001933358.1| ribonuclease H [Treponema pallidum subsp. pallidum SS14]
gi|6685892|sp|O83372.1|RNH_TREPA RecName: Full=Ribonuclease H; Short=RNase H
gi|238689319|sp|B2S2V0.1|RNH_TREPS RecName: Full=Ribonuclease H; Short=RNase H
gi|3322632|gb|AAC65340.1| ribonuclease H (rnhA) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018161|gb|ACD70779.1| ribonuclease H [Treponema pallidum subsp. pallidum SS14]
Length = 169
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 1 MDPDNHVVVFTDGACPRN----GKVGASAGYGVYF---GENNPLNVAGKVTGRV---TNN 50
M+ + ++TDGAC N G A V F G+ P A +G TNN
Sbjct: 1 MNAHAALTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYPSTNN 60
Query: 51 NAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
E+ I+AL++A + V + +DSQ++ K + +W+ W+ NGW+ A +PV+NK +
Sbjct: 61 RMELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNK-D 119
Query: 111 LQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
L E L + SV+W +V GH N D +A DAA
Sbjct: 120 LWEALSALADALSVEWRWVKGHAGDPYNELCDRLATDAA 158
>gi|410084915|ref|ZP_11281636.1| Ribonuclease HI [Morganella morganii SC01]
gi|409768560|gb|EKN52620.1| Ribonuclease HI [Morganella morganii SC01]
Length = 156
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDG+C N G Y G L+ +T TNN E+ AI AL+
Sbjct: 3 DKVEIFTDGSCLGNPGPGGYGALLRYKGHEKALSEGFFLT---TNNRMELLAAIVALETL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + + +DSQ++ + + +W+ W+ GWRKAD PV N + Q L I + + +
Sbjct: 60 KRPC--NIVLTTDSQYVRQGITQWIHNWKRRGWRKADKSPVVNVDLWQRLDSAITRHQ-I 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N + DE+AR AA
Sbjct: 117 DWQWVKGHAGHPENERCDELARAAA 141
>gi|420593942|ref|ZP_15087104.1| RNase H family protein [Yersinia pestis PY-10]
gi|420777517|ref|ZP_15249883.1| RNase H family protein [Yersinia pestis PY-88]
gi|391478913|gb|EIR35773.1| RNase H family protein [Yersinia pestis PY-10]
gi|391659018|gb|EIS95367.1| RNase H family protein [Yersinia pestis PY-88]
Length = 154
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q +++W
Sbjct: 62 PC--EVTLSTDSQYVRQGITQWIHNWKKRGWKPADRKPVRNVDLWQRLDLAI-QSHTIQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|444378122|ref|ZP_21177327.1| Ribonuclease HI [Enterovibrio sp. AK16]
gi|443677924|gb|ELT84600.1| Ribonuclease HI [Enterovibrio sp. AK16]
Length = 155
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV + TNN E+ AI L K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVMRYKQHEKEMSEGFALTTNNRMELLAAIVGLASLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + Q +V
Sbjct: 61 ESC--NVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQRLDTET-QRHTVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N + DE+AR AA
Sbjct: 118 WQWVKGHAGHPENERCDELARTAA 141
>gi|365834753|ref|ZP_09376195.1| ribonuclease HI [Hafnia alvei ATCC 51873]
gi|364568584|gb|EHM46225.1| ribonuclease HI [Hafnia alvei ATCC 51873]
Length = 156
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y L+ +T TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYKQHEKTLSAGYYLT---TNNRMELMAAIVALETLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+C SDSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q ++
Sbjct: 61 DPCSVILC--SDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDLAI-QPHKIE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W ++ GH N + DE+AR AAG
Sbjct: 118 WVWIKGHAGHIENERCDELARAAAG 142
>gi|261211354|ref|ZP_05925642.1| ribonuclease HI [Vibrio sp. RC341]
gi|260839309|gb|EEX65935.1| ribonuclease HI [Vibrio sp. RC341]
Length = 156
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--HVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>gi|254448795|ref|ZP_05062252.1| RNase H [gamma proteobacterium HTCC5015]
gi|198261636|gb|EDY85924.1| RNase H [gamma proteobacterium HTCC5015]
Length = 145
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G +Y G L G+ TNN E+ AI L K
Sbjct: 4 VTLYTDGACKGNPGPGGWGVLLIYGGHEKEL-CGGEA--ETTNNRMELMAAIEGLNALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ RV + +DS ++ + + +W+ W+ NGWR A KPV+N ++L + L + ++W
Sbjct: 61 SC--RVALYTDSNYVRQGMTQWLANWKKNGWRTAAKKPVKN-DDLWQALDAACERHEIEW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH GN +ADE+A
Sbjct: 118 HWVKGHSGDPGNERADELA 136
>gi|153208788|ref|ZP_01947020.1| RNase H [Coxiella burnetii 'MSU Goat Q177']
gi|165920928|ref|ZP_02219598.1| RNase H [Coxiella burnetii Q321]
gi|212218151|ref|YP_002304938.1| ribonuclease H [Coxiella burnetii CbuK_Q154]
gi|238056785|sp|B6J5V1.1|RNH_COXB1 RecName: Full=Ribonuclease H; Short=RNase H
gi|120575750|gb|EAX32374.1| RNase H [Coxiella burnetii 'MSU Goat Q177']
gi|165916776|gb|EDR35380.1| RNase H [Coxiella burnetii Q321]
gi|212012413|gb|ACJ19793.1| ribonuclease HI [Coxiella burnetii CbuK_Q154]
Length = 154
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V ++ DGAC N G G+GV N TNN E+ AI LK
Sbjct: 7 NIVYLYCDGACRGNPGPG---GWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGLKSL 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ++ + + EW+P W+ GWR ++ KPV+N + L E L + + ++
Sbjct: 64 KKPC--QVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKN-QPLWETLEREVERHTI 120
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH N ADE+A
Sbjct: 121 VWHWVKGHSGHAENEIADELA 141
>gi|325971303|ref|YP_004247494.1| ribonuclease H [Sphaerochaeta globus str. Buddy]
gi|324026541|gb|ADY13300.1| Ribonuclease H [Sphaerochaeta globus str. Buddy]
Length = 149
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR-VTNNNAEIQGAIHALKQA 64
+V++TDG C N G G+ + R TNN E+ I ALK +
Sbjct: 5 EIVIYTDGGCLGNPGPG---GWAYVLKADGIFEKEASGNERDTTNNRMELTAVIEALKAS 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
++ + + +DSQ++ + W+ KW+ NGWR A +PV+NKE E L ++ V
Sbjct: 62 QALGAQSISLNTDSQYVKNGITSWIKKWKVNGWRTAAKEPVKNKEYWVE-LDRLNANLPV 120
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
+W +V GH GN + D++ R A
Sbjct: 121 QWNWVKGHAGVEGNERCDQLVRMA 144
>gi|257095468|ref|YP_003169109.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257047992|gb|ACV37180.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 160
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ +F DG C N G G+GV GE+ G+ TNN E+ AI AL+
Sbjct: 7 ITIFADGGCRGNPGPG---GWGVVLQAGEHEKELWGGEPD--TTNNRMEMTAAIRALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ++ K + EW+ W+ NGWR AD KPV+N + Q L G+ +
Sbjct: 62 KRPA--SVRLHTDSQYLQKGISEWIHNWKRNGWRTADKKPVKNADLWQRLDELAGE-HRI 118
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH GN +AD +A
Sbjct: 119 QWCWVKGHAGHSGNERADALA 139
>gi|363539939|ref|YP_004894660.1| mg609 gene product [Megavirus chiliensis]
gi|350611104|gb|AEQ32548.1| putative ribonuclease H protein [Megavirus chiliensis]
Length = 240
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKSANIDRVCIK---SDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
A+K S + CI +DSQ+ I C+ +W+P W N WR + V N+E + E ++
Sbjct: 67 AIKYVHSEIGLQNCILNIFTDSQYSINCITKWVPAWIKNNWRTKNNTAVANREFI-EPIY 125
Query: 117 QIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
+ ++ + V H +S N KAD +A A
Sbjct: 126 RYYNKYNINFTHVDAHTGRDDYDSIANAKADYLATKAT 163
>gi|329894915|ref|ZP_08270714.1| Ribonuclease HI [gamma proteobacterium IMCC3088]
gi|328922644|gb|EGG29979.1| Ribonuclease HI [gamma proteobacterium IMCC3088]
Length = 148
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++TDGAC N +G G+G + GE+ G+ TNN E+ I AL+
Sbjct: 5 VVIYTDGACKGNPGIG---GWGAWLRAGEHEKEMCGGE--HDTTNNRMELTATIKALETL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V I +DS ++ V +WM W+ N WR A + V+NK+ Q L IGQ E +
Sbjct: 60 KVPCT--VDIYTDSVYVRDGVTKWMSNWKRNNWRTASKQLVKNKDLWQALDAAIGQHE-I 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH + GN +AD++A
Sbjct: 117 NWHWVKGHSGNQGNERADQLA 137
>gi|345017672|ref|YP_004820025.1| ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033015|gb|AEM78741.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
Length = 152
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G A +Y G ++ + T TNN E++ I ALK K
Sbjct: 8 VEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENT---TNNRMELKAVIEALKALKR 64
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + SDS ++I +E W+ KWQ N W K+D PV+N+E +ELL ++ + +
Sbjct: 65 PC--KVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELL-EVSKRHQIN 121
Query: 126 WEFVPGHGNSHGNMKADEMARD 147
W V GH +S N D +A +
Sbjct: 122 WIKVKGHADSEYNNLCDRLATE 143
>gi|372273370|ref|ZP_09509418.1| RNase H [Marinobacterium stanieri S30]
Length = 146
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 16/144 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + +GE+ G+ TNN E+Q AI AL
Sbjct: 4 VEIYTDGACKGNPGPG---GWGAVLRYGEHEKELFGGEPD--TTNNRMELQAAISAL--- 55
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A++ R C + +DSQ++ + + W+ W+ NGW+ A KPV+N + Q L Q+ +
Sbjct: 56 --ASLKRPCEVVLTTDSQYLRQGILSWLAGWKRNGWKTAAKKPVKNVDLWQALDEQVARH 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W +V GH GN AD +A
Sbjct: 114 Q-VEWRWVKGHSGHRGNEHADRLA 136
>gi|350562051|ref|ZP_08930888.1| Ribonuclease H [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349780369|gb|EGZ34704.1| Ribonuclease H [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V +TDGAC N G + G L A T TNN E+ AI AL+
Sbjct: 5 DDVVYAYTDGACRGNPGPGGWGAVLRFRGRERELRGAEPDT---TNNRMEMTAAIQALEA 61
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
RV + +DSQ++ + + W+P W+ GWR A GKPV+N ++L L +
Sbjct: 62 LTRPC--RVELLTDSQYLKQGITSWLPGWKRRGWRAASGKPVKN-QDLWLRLDALAAQHE 118
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
++W +V GH N +AD++A A
Sbjct: 119 IEWFWVRGHSGHPENERADQLANQA 143
>gi|375105796|ref|ZP_09752057.1| ribonuclease HI [Burkholderiales bacterium JOSHI_001]
gi|374666527|gb|EHR71312.1| ribonuclease HI [Burkholderiales bacterium JOSHI_001]
Length = 151
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++TDGAC N G G+G + +G++ G+ TNN E+ I AL
Sbjct: 11 VVIYTDGACKGNPGPG---GWGAFLRWGDHEKELFGGESN--TTNNRMELTAVIQALGSL 65
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DS+++ + W+ W+ GWR AD KPV+N+E Q L Q+ Q V
Sbjct: 66 KRDCA--VAVYTDSEYVKNGITTWIHGWKKRGWRTADNKPVKNQELWQALEAQVAQ-HRV 122
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH GN +AD +A
Sbjct: 123 QWHWVRGHNGDPGNERADALA 143
>gi|154707372|ref|YP_001425095.1| ribonuclease H [Coxiella burnetii Dugway 5J108-111]
gi|212213174|ref|YP_002304110.1| ribonuclease H [Coxiella burnetii CbuG_Q212]
gi|187611365|sp|A9KGQ0.1|RNH_COXBN RecName: Full=Ribonuclease H; Short=RNase H
gi|238056786|sp|B6J1Y7.1|RNH_COXB2 RecName: Full=Ribonuclease H; Short=RNase H
gi|154356658|gb|ABS78120.1| ribonuclease HI [Coxiella burnetii Dugway 5J108-111]
gi|212011584|gb|ACJ18965.1| ribonuclease HI [Coxiella burnetii CbuG_Q212]
Length = 154
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V ++ DGAC N G G+GV N TNN E+ AI LK
Sbjct: 7 NIVYLYCDGACRGNPGPG---GWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGLKSL 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ++ + + EW+P W+ GWR ++ KPV+N + L E L + + ++
Sbjct: 64 KKPC--QVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKN-QPLWETLEREVERHTI 120
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH N ADE+A
Sbjct: 121 VWHWVKGHSGHAENEIADELA 141
>gi|152995730|ref|YP_001340565.1| ribonuclease H [Marinomonas sp. MWYL1]
gi|150836654|gb|ABR70630.1| Ribonuclease H [Marinomonas sp. MWYL1]
Length = 142
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 9 VFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N +G G+G + FGE+ G+ TNN E+ GAI L+ K
Sbjct: 1 MYTDGACKGNPGIG---GWGAWLTFGEHEKHLCGGEHD--TTNNRMELMGAIEGLRALKE 55
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS ++ K + EW+ W+ GW A +PV+NK+ Q L Q Q V W
Sbjct: 56 KC--SVTLYTDSSYVQKGITEWLAGWKRKGWMTASKQPVKNKDLWQALDEQC-QYHEVTW 112
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH GN AD++A
Sbjct: 113 KWVKGHAGIEGNEIADQLA 131
>gi|319784690|ref|YP_004144166.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170578|gb|ADV14116.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 176
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G G+G N TNN E+ AI AL K
Sbjct: 4 QVEIFTDGACSGNPGPG---GWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L + + V
Sbjct: 61 EPCT--VELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNG-ELWQALDEANKRHKVT 117
Query: 126 WEFVPGHGNSHGNMKADEMARD 147
W +V GH N +ADE+AR+
Sbjct: 118 WNWVKGHDGHVENERADELARE 139
>gi|419796835|ref|ZP_14322353.1| ribonuclease HI [Neisseria sicca VK64]
gi|385699080|gb|EIG29399.1| ribonuclease HI [Neisseria sicca VK64]
Length = 145
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I L
Sbjct: 2 DKPVYLYTDGACKGNPGAG---GWGVFMRYGAHEKELFGGEA--ETTNNRMELTAVIEGL 56
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N ++L + L + Q
Sbjct: 57 KSLKRRC--QVIICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKN-DDLWKELDSLVQQ 113
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N KADE+A A
Sbjct: 114 HDVRWTWVKGHAGHPENEKADELANRGA 141
>gi|377579804|ref|ZP_09808765.1| ribonuclease H [Escherichia hermannii NBRC 105704]
gi|377538874|dbj|GAB53930.1| ribonuclease H [Escherichia hermannii NBRC 105704]
Length = 158
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL +A
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHERTFSEGYLLTTNNRMELMAAIVAL-EALR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + Q + W
Sbjct: 61 EDCD-VTLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDKALSQ-HKINW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|371943967|gb|AEX61795.1| putative ribonuclease H protein [Megavirus courdo7]
Length = 240
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKSANIDRVCIK---SDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
A+K S + CI +DSQ+ I C+ +W+P W N WR + V N+E + E ++
Sbjct: 67 AIKYVHSEIGLQNCILNIFTDSQYSINCITKWVPAWIKNNWRTKNNTAVANREFI-EPIY 125
Query: 117 QIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
+ ++ + V H +S N KAD +A A
Sbjct: 126 RYYNKYNINFTHVDAHTGRDDYDSIANAKADYLATKAT 163
>gi|349608800|ref|ZP_08888218.1| ribonuclease H [Neisseria sp. GT4A_CT1]
gi|348609672|gb|EGY59403.1| ribonuclease H [Neisseria sp. GT4A_CT1]
Length = 145
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V ++TDGAC N G G+GV+ +G + G+ TNN E+ I L
Sbjct: 2 DKPVYLYTDGACKGNPGAG---GWGVFMRYGAHEKELFGGEA--ETTNNRMELTAVIEGL 56
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K K +V I +DSQ++ ++ W+ W+ NGW+ A KPV+N + +EL + Q
Sbjct: 57 KSLKRRC--QVIICTDSQYVKNGMESWIHGWKKNGWKTAAKKPVKNDDLWKELDSLVQQH 114
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
E V+W +V GH N KADE+A A
Sbjct: 115 E-VRWTWVKGHAGHPENEKADELANRGA 141
>gi|336123525|ref|YP_004565573.1| ribonuclease HI [Vibrio anguillarum 775]
gi|335341248|gb|AEH32531.1| Ribonuclease HI [Vibrio anguillarum 775]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ A+ AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKETEKTLAKGYRLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ +D KPV+N +L + L + ++
Sbjct: 61 EPC--NVILTTDSQYVRQGITQWIHNWKKRGWKTSDKKPVKNA-DLWQALDKESARHTID 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR+AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARNAA 141
>gi|333978973|ref|YP_004516918.1| Ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822454|gb|AEG15117.1| Ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
Length = 157
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G GYGV N + + TNN E+ I L+ K
Sbjct: 7 VEIYTDGACSGNPGPG---GYGVVLRYGNHVKEISGGYAQTTNNRMELMAVIEGLRALKR 63
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DS++++ + W+ +WQ+NGWR+ +G+P +N + +++L + +
Sbjct: 64 PC--RVTIYTDSRYIVDAMTRGWVRRWQANGWRRENGEPAKNADLWRQIL-SLASKHRIT 120
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH ++ N + D++A +A+
Sbjct: 121 WVWVKGHADNIYNNRCDQLAVEAS 144
>gi|302059180|ref|ZP_07250721.1| ribonuclease H [Pseudomonas syringae pv. tomato K40]
Length = 150
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L++
Sbjct: 3 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELTGAIRGLEEL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EW+ W+ GW+ A +PV+N + Q L Q+ + +V
Sbjct: 60 KRPC--EVTLVTDSQYVMKGITEWLVNWKKRGWKPAAKEPVKNADLWQLLDEQVSR-HTV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
KW++V GH GN +AD++A
Sbjct: 117 KWQWVRGHIGHPGNERADQLA 137
>gi|26990835|ref|NP_746260.1| ribonuclease H [Pseudomonas putida KT2440]
gi|148546961|ref|YP_001267063.1| ribonuclease H [Pseudomonas putida F1]
gi|167034709|ref|YP_001669940.1| ribonuclease H [Pseudomonas putida GB-1]
gi|386011302|ref|YP_005929579.1| protein RnhA [Pseudomonas putida BIRD-1]
gi|395448258|ref|YP_006388511.1| ribonuclease H [Pseudomonas putida ND6]
gi|397696864|ref|YP_006534747.1| ribonuclease HI [Pseudomonas putida DOT-T1E]
gi|421520201|ref|ZP_15966868.1| ribonuclease H [Pseudomonas putida LS46]
gi|37999405|sp|Q88FF5.1|RNH_PSEPK RecName: Full=Ribonuclease HI; Short=RNase HI
gi|189043704|sp|A5W169.1|RNH_PSEP1 RecName: Full=Ribonuclease H; Short=RNase H
gi|189043705|sp|B0KN00.1|RNH_PSEPG RecName: Full=Ribonuclease H; Short=RNase H
gi|24985843|gb|AAN69724.1|AE016608_10 ribonuclease HI [Pseudomonas putida KT2440]
gi|148511019|gb|ABQ77879.1| RNase HI [Pseudomonas putida F1]
gi|166861197|gb|ABY99604.1| Ribonuclease H [Pseudomonas putida GB-1]
gi|313498008|gb|ADR59374.1| RnhA [Pseudomonas putida BIRD-1]
gi|388562255|gb|AFK71396.1| ribonuclease H [Pseudomonas putida ND6]
gi|397333594|gb|AFO49953.1| Ribonuclease HI [Pseudomonas putida DOT-T1E]
gi|402755960|gb|EJX16427.1| ribonuclease H [Pseudomonas putida LS46]
Length = 148
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G +Y G L + T TNN E+ AI L
Sbjct: 3 DSVEMFTDGACKGNPGPGGWGVLMIYKGVEKELWGGERET---TNNRMELMAAIQGLMSL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + V
Sbjct: 60 KREC--EVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVNR-HKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH GN +AD++A
Sbjct: 117 TWKWVRGHIGHPGNERADQLA 137
>gi|354542897|emb|CCE39615.1| hypothetical protein CPAR2_600280 [Candida parapsilosis]
Length = 274
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 29/168 (17%)
Query: 9 VFTDGACPRNGKV-GASAGYGVYFGENNPLNVA---------GKVTGRVTNNNAEIQGAI 58
V+ DGA NG+ A++GYGVY+G N+ N A K T TN AE+ G
Sbjct: 104 VYVDGASRGNGQSKSAASGYGVYYGPNDSRNAAVGLHEVDNINKYT--PTNQRAELHGMK 161
Query: 59 HALKQAKS--------ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEE 110
HAL K+ + + I SDS++ I+ + EW +WQ+NGW+ + G+PV N +
Sbjct: 162 HALTNIKNDLSSGKPSSGSSKYDIYSDSKYAIQSINEWSDRWQANGWKTSTGQPVANVDL 221
Query: 111 LQEL---------LHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+++ LH+ + +++ V GH GN AD +A A
Sbjct: 222 IKDAVKLKNDINQLHRERDWQPLQFYHVKGHSGDVGNEAADRLANQGA 269
>gi|262404570|ref|ZP_06081125.1| ribonuclease HI [Vibrio sp. RC586]
gi|262349602|gb|EEY98740.1| ribonuclease HI [Vibrio sp. RC586]
Length = 156
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYGV + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGVVMRYKQVEKTLARGYRLTTNNRMEMLAAVVALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--QVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDRETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARSAA 141
>gi|397677359|ref|YP_006518897.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395398048|gb|AFN57375.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 156
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V++ TDGAC N G Y G ++ + T TNN E+Q I AL
Sbjct: 8 DKIVMIATDGACKGNPGFGGWGALLRYQGHEKAISGSENPT---TNNRMELQAVIEALSC 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K R+ + +DS++++ + W+ WQ NGW A KPV+N + ++LL + +
Sbjct: 65 LKKPC--RIELSTDSKYVMDGLTRWIHGWQKNGWLTAAKKPVKNADLWKQLL-ALTRQHD 121
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V GH N +AD++A DAA
Sbjct: 122 IAWKWVKGHAGHPDNERADQLASDAA 147
>gi|261340924|ref|ZP_05968782.1| ribonuclease HI [Enterobacter cancerogenus ATCC 35316]
gi|288316781|gb|EFC55719.1| ribonuclease HI [Enterobacter cancerogenus ATCC 35316]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAIMRYREHEKTFSEGYFLTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ D V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ +KW
Sbjct: 62 -HCD-VTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQ-HVIKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>gi|29653667|ref|NP_819359.1| ribonuclease H [Coxiella burnetii RSA 493]
gi|161829961|ref|YP_001596267.1| ribonuclease H [Coxiella burnetii RSA 331]
gi|81839104|sp|Q83EK3.1|RNH_COXBU RecName: Full=Ribonuclease H; Short=RNase H
gi|187611366|sp|A9NB52.1|RNH_COXBR RecName: Full=Ribonuclease H; Short=RNase H
gi|29540929|gb|AAO89873.1| ribonuclease HI [Coxiella burnetii RSA 493]
gi|161761828|gb|ABX77470.1| RNase H [Coxiella burnetii RSA 331]
Length = 154
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V ++ DGAC N G G+GV N TNN E+ AI LK
Sbjct: 7 NIVYLYCDGACRGNPGPG---GWGVLLRYNQHERQLHGGVANTTNNQMELTAAIEGLKSL 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K +V + +DSQ++ + + EW+P W+ GWR ++ KPV+N + L E L + + ++
Sbjct: 64 KKPC--QVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKN-QPLWETLEREVERHTI 120
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH N ADE+A
Sbjct: 121 VWHWVKGHSGHAENEIADELA 141
>gi|339488436|ref|YP_004702964.1| ribonuclease H [Pseudomonas putida S16]
gi|421531376|ref|ZP_15977787.1| ribonuclease H [Pseudomonas putida S11]
gi|431803457|ref|YP_007230360.1| ribonuclease H [Pseudomonas putida HB3267]
gi|338839279|gb|AEJ14084.1| ribonuclease H [Pseudomonas putida S16]
gi|402211188|gb|EJT82674.1| ribonuclease H [Pseudomonas putida S11]
gi|430794222|gb|AGA74417.1| ribonuclease H [Pseudomonas putida HB3267]
Length = 148
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDGAC N G +Y G L + T TNN E+ AI L K
Sbjct: 5 VEMFTDGACKGNPGPGGWGVLMIYKGVEKELWGGERET---TNNRMELMAAIQGLMALKR 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + V W
Sbjct: 62 EC--EVVLTTDSQYVMKGINEWMTNWKKRGWKTAAKEPVKNADLWQQLDEQVNR-HKVTW 118
Query: 127 EFVPGHGNSHGNMKADEMA 145
++V GH GN +AD++A
Sbjct: 119 KWVRGHIGHPGNERADQLA 137
>gi|226939809|ref|YP_002794882.1| RnhA [Laribacter hongkongensis HLHK9]
gi|226714735|gb|ACO73873.1| RnhA [Laribacter hongkongensis HLHK9]
Length = 149
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 8/144 (5%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
PD V ++TDGAC N G G+ L T TNN E+Q I AL+
Sbjct: 5 PDTMVEIYTDGACKGNPGPGGWGALLRCQGQEKELFGGAPDT---TNNRMELQAVIEALR 61
Query: 63 QAKS-ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K +ID I +DSQ++ K + EW+ W++ GWR A PV+N + Q L ++ +
Sbjct: 62 CLKRPCDID---IYTDSQYVQKGISEWITGWKARGWRTASKAPVKNADLWQMLDAEVAR- 117
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
++W +V GH N +ADE+A
Sbjct: 118 HRIQWHWVKGHAGHEFNERADELA 141
>gi|68171356|ref|ZP_00544752.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88657670|ref|YP_507084.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
gi|123722801|sp|Q2GHJ9.1|RNH_EHRCR RecName: Full=Ribonuclease H; Short=RNase H
gi|67999227|gb|EAM85881.1| RNase H [Ehrlichia chaffeensis str. Sapulpa]
gi|88599127|gb|ABD44596.1| ribonuclease HI [Ehrlichia chaffeensis str. Arkansas]
Length = 146
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D N VV++TDGAC N G A V ++N + G TNN E+ I AL
Sbjct: 3 DELNKVVIYTDGACSGNPGPGGWAA--VLLFDDNEKTICGN-DSDTTNNRMELTAVIEAL 59
Query: 62 KQAKSA-NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
K K A N+D + +DS ++ + W+ KW+ NGW+ A+ PV+N E E L +
Sbjct: 60 KLLKVAYNVD---LYTDSVYVKDGITLWIRKWKVNGWKTANKMPVKNLELWLE-LDSLAN 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
V W +V H N KAD +AR
Sbjct: 116 FHKVTWYWVRAHVGDLYNQKADMLAR 141
>gi|251788640|ref|YP_003003361.1| Ribonuclease H [Dickeya zeae Ech1591]
gi|247537261|gb|ACT05882.1| Ribonuclease H [Dickeya zeae Ech1591]
Length = 154
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDG+C N G GYGV Y L+ ++T TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGVLLRYKQHEKTLSAGYRLT---TNNRMELMAAIVALES 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ V + +DSQ++ + + W+ W+ GW+ A+ KPV+N + Q L I Q +
Sbjct: 59 LTTPC--DVTLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNIDLWQRLDSAI-QRHT 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V GH N + DE+AR AA
Sbjct: 116 LHWQWVKGHAGHPENERCDELARQAA 141
>gi|241068559|ref|XP_002408469.1| ribonuclease H, putative [Ixodes scapularis]
gi|215492457|gb|EEC02098.1| ribonuclease H, putative [Ixodes scapularis]
Length = 152
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 2 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEIFGHELDTTNNRMEITAALEALRI 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 59 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELNK-H 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 115 TIIWKWVKGHANNSGNIAADKLA 137
>gi|386815700|ref|ZP_10102918.1| Ribonuclease H [Thiothrix nivea DSM 5205]
gi|386420276|gb|EIJ34111.1| Ribonuclease H [Thiothrix nivea DSM 5205]
Length = 151
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 3 PDNHVV-VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
P+N VV +FTDGAC N G G+G N TNN E+ AI AL
Sbjct: 2 PNNDVVNIFTDGACRGNPGPG---GWGALLRYNGRERELYGYQPETTNNQMELMAAIQAL 58
Query: 62 KQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
+ + R C + +DSQ++ + + EW+ W+ GW+ A GKPV+NK EL + L
Sbjct: 59 E-----TLTRPCAVSLTTDSQYVRQGITEWVAGWKRKGWKTAAGKPVKNK-ELWQRLDAA 112
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDA 148
V W +V GH N + D++A A
Sbjct: 113 AARHQVSWHWVKGHSGHDENERVDQLANKA 142
>gi|118581344|ref|YP_902594.1| ribonuclease H [Pelobacter propionicus DSM 2379]
gi|187611390|sp|A1AT66.1|RNH_PELPD RecName: Full=Ribonuclease H; Short=RNase H
gi|118504054|gb|ABL00537.1| ribonuclease H [Pelobacter propionicus DSM 2379]
Length = 163
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++ DGAC N G GYG N TNN E+ A+ AL+
Sbjct: 20 VEIYCDGACSGNPGPG---GYGAILRYNGHEKEIRGSEAHTTNNRMELTAAMEALRLLTR 76
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
R+ I +DSQ+++K + EW+ WQ GW+ + +PV N++ +ELL ++ V W
Sbjct: 77 PC--RITIVTDSQYLVKGMTEWIQGWQRRGWQNSKKEPVLNRDLWEELL-KLSAHHDVSW 133
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+++ GH N + D +AR A
Sbjct: 134 QWIRGHAGHAENERCDSLARQA 155
>gi|326389406|ref|ZP_08210973.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
gi|392940984|ref|ZP_10306628.1| ribonuclease HI [Thermoanaerobacter siderophilus SR4]
gi|325994411|gb|EGD52836.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
gi|392292734|gb|EIW01178.1| ribonuclease HI [Thermoanaerobacter siderophilus SR4]
Length = 152
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G A +Y G ++ + T TNN E++ I ALK K
Sbjct: 8 VEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENT---TNNRMELKAVIEALKALKR 64
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + SDS ++I +E W+ KWQ N W K+D PV+N+E +ELL ++ + +
Sbjct: 65 PC--KVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQELWKELL-KVSKRHQIN 121
Query: 126 WEFVPGHGNSHGNMKADEMARD 147
W V GH +S N D +A +
Sbjct: 122 WIKVKGHADSEYNNLCDRLATE 143
>gi|239947173|ref|ZP_04698926.1| ribonuclease HI [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921449|gb|EER21473.1| ribonuclease HI [Rickettsia endosymbiont of Ixodes scapularis]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
D+ VV++TDGAC N G G+G N+ TNN EI A+ AL+
Sbjct: 5 DSKVVIYTDGACAGNPGPG---GWGALLQFNDTSKEIFGHELDTTNNRMEITAALEALRI 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 62 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELNK-H 117
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 118 TIIWKWVKGHANNSGNIAADKLA 140
>gi|124024989|ref|YP_001014105.1| ribonuclease HI [Prochlorococcus marinus str. NATL1A]
gi|187611393|sp|A2C030.1|RNH_PROM1 RecName: Full=Ribonuclease H; Short=RNase H
gi|123960057|gb|ABM74840.1| Ribonuclease HI [Prochlorococcus marinus str. NATL1A]
Length = 161
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 19/147 (12%)
Query: 7 VVVFTDGAC---PRNGKVGA----SAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+ TDGAC P G GA G + FG N+P TNN E+Q A+
Sbjct: 9 IAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSP---------ETTNNRMELQAALF 59
Query: 60 ALKQAKSANI-DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
L++ K+ + IK+DS+++I +++WMP W+ GW+ A GKPV N++ + L H
Sbjct: 60 ILEKLKNIEFAPSLTIKTDSKYLIDGMEKWMPNWKKKGWKTASGKPVLNQDLWKALDHP- 118
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
++ +K ++V GH N + D +A
Sbjct: 119 -ELPKIKLQYVKGHSGEKDNDRVDAIA 144
>gi|389878652|ref|YP_006372217.1| ribonuclease H [Tistrella mobilis KA081020-065]
gi|388529436|gb|AFK54633.1| ribonuclease H [Tistrella mobilis KA081020-065]
Length = 151
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P V FTDGAC N G G+GV GE G+ TNN E+ AI A
Sbjct: 7 PKKIVEAFTDGACSGNPGPG---GWGVLLRWGELEREMSGGEPL--TTNNRMELTAAIEA 61
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K R+C +DS ++ + +W+ W+ NGW+ A PV+N + QEL + +
Sbjct: 62 LRALKRPTTIRIC--TDSTYVRDGITKWIHGWKRNGWKTASKDPVKNADLWQELDGLV-R 118
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
+V+WE+V GH N +AD +AR
Sbjct: 119 GHTVEWEWVRGHAGHPENERADALAR 144
>gi|383816236|ref|ZP_09971637.1| Ribonuclease H [Serratia sp. M24T3]
gi|383294897|gb|EIC83230.1| Ribonuclease H [Serratia sp. M24T3]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y P + ++T TNN E+ AI +L +A +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYKEHEKPFSAGYRLT---TNNRMELMAAIVSL-EALT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + + L I Q ++ W
Sbjct: 61 TPCD-VTLSTDSQYVRQGITLWIHNWKKRGWKTADKKPVKNVDLWKRLDAAI-QTHTLNW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+V GH N + DE+AR AAG
Sbjct: 119 MWVKGHAGHPENERCDELARVAAG 142
>gi|365540521|ref|ZP_09365696.1| ribonuclease H [Vibrio ordalii ATCC 33509]
Length = 155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ A+ AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKGTEKTLAKGYRLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ +D KPV+N +L + L + ++
Sbjct: 61 EPC--NVILTTDSQYVRQGITQWIHNWKKRGWKTSDKKPVKNA-DLWQALDKESARHTID 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR+AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARNAA 141
>gi|213422427|ref|ZP_03355493.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
Length = 146
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|149236513|ref|XP_001524134.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452510|gb|EDK46766.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 331
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 32/168 (19%)
Query: 5 NHVVVFTDGACP-RNGKVGASAGYGVYFGENNPLNVAGKVTGR-------VTNNNAEIQG 56
N ++TDGAC N + A++GYGVY+G+++ N A ++ TN AE+
Sbjct: 147 NVTRIYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQRAELHA 206
Query: 57 AIHALKQAKSANID----------RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQ 106
+HAL+ NID R I SDS + +KC++ W KW NGW+ +PV
Sbjct: 207 VLHALR-----NIDKELDKAIYKCRYAICSDSIYALKCIKIWSAKWLKNGWQNVAKRPVA 261
Query: 107 NKEELQELLHQIGQME---------SVKWEFVPGHGNSHGNMKADEMA 145
N + ++E + +++ S+++ V GH + GN AD +A
Sbjct: 262 NADIIKEAVRLTAKIDDVYGQLGWNSLQFIHVRGHSGNKGNDIADNLA 309
>gi|417403794|ref|ZP_12157641.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353628696|gb|EHC76675.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 154
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|409393357|ref|ZP_11244798.1| ribonuclease H [Gordonia rubripertincta NBRC 101908]
gi|403196892|dbj|GAB88032.1| ribonuclease H [Gordonia rubripertincta NBRC 101908]
Length = 157
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 3 PDNHVV-VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
PD+ VV + TDGAC N G Y G ++ + T TNN E+ AI L
Sbjct: 11 PDDAVVEISTDGACLGNPGPGGWGAVLRYKGNEKRISGSDPDT---TNNKMELTAAIEGL 67
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
A +V I +DS ++ + +W+ WQ+NGW+ D KPV+N + + L+ + +
Sbjct: 68 --AALTRPSKVIIYTDSTYVRNGIMKWVAGWQANGWKTKDKKPVKNADLWRRLIEEEKRH 125
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
E V+W +V GH H N ADE+A AA
Sbjct: 126 E-VEWRWVKGHAGDHFNEIADELATTAA 152
>gi|365848120|ref|ZP_09388599.1| ribonuclease HI [Yokenella regensburgei ATCC 43003]
gi|364571321|gb|EHM48912.1| ribonuclease HI [Yokenella regensburgei ATCC 43003]
Length = 175
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG + TNN E+ AI AL+ K+
Sbjct: 25 VEIFTDGSCLGNPGPG---GYGAILRYQQHEKTFSEGFRLTTNNRMEMMAAIVALEALKA 81
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + + L + + ++W
Sbjct: 82 PCA--VVLSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALSHHQ-IQW 138
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AAG
Sbjct: 139 EWVKGHAGHPENERCDELARTAAG 162
>gi|289207685|ref|YP_003459751.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
gi|288943316|gb|ADC71015.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
Length = 153
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G Y G L A T TNN E+ AI AL+
Sbjct: 3 DERVYIYTDGACRGNPGPGGWGAILRYRGTERELYGAEAET---TNNRMELTAAIRALET 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DS+++ + + EW+P W+ W+ A G PV+N+ +L E L
Sbjct: 60 LKRPC--KVELVTDSKYVKQGLTEWLPGWKRRNWKSASGSPVKNR-DLWEALDAEAARHD 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
++W +V GH N +ADE+A
Sbjct: 117 IEWYWVRGHSGHPENERADELA 138
>gi|392413886|ref|YP_006450492.1| ribonuclease HI [Desulfomonile tiedjei DSM 6799]
gi|390627022|gb|AFM28228.1| ribonuclease HI [Desulfomonile tiedjei DSM 6799]
Length = 184
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 5 NHVVV--FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+H+VV FTDGAC N G A G L T TN E+ AI AL
Sbjct: 39 DHIVVEIFTDGACSGNPGPGGWAAIIRKNGTEEELTGGEPAT---TNQRMELMPAIVALS 95
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
S + +V + SDSQ++IK + EW+ W+S GWRK++ KPV+N +L + L I
Sbjct: 96 SLNSPS--KVRLYSDSQYLIKGMNEWIEGWKSRGWRKSNNKPVENP-DLWKRLDAIAARH 152
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDA 148
V+W V GH N N + D +A A
Sbjct: 153 QVEWIKVKGHDNHPENERVDRLAVQA 178
>gi|417339422|ref|ZP_12120989.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960390|gb|EHJ84246.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 152
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAAA 142
>gi|190149716|ref|YP_001968241.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307260898|ref|ZP_07542584.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307263025|ref|ZP_07544647.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189914847|gb|ACE61099.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|306869465|gb|EFN01256.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306871651|gb|EFN03373.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYFQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK EL L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-ELWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 TWVKGHSGHRENEICDELAKAGA 140
>gi|209489243|gb|ACI49025.1| hypothetical protein Cbre_JD04.010 [Caenorhabditis brenneri]
Length = 247
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQA-KS 66
++TDG RNG+ GA G+ + + + + G + G TNN E++ AL+++ +S
Sbjct: 15 IYTDGCALRNGQPGAKGGWAIVYELGDFQDAYGYCMDGPQTNNRFELEAIGQALERSLES 74
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME---- 122
+ I +DS++ I ++ W+ KW+ NGWR + GK V N +Q++ + +
Sbjct: 75 GGEYDITIFTDSKYAINSIKHWIKKWKQNGWRNSQGKRVHNDLLIQDIDSMLEDINYAGG 134
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
SV++E+V H + N KAD +A+ AA
Sbjct: 135 SVEFEYVEAHSGNWFNEKADRLAKKAA 161
>gi|198282703|ref|YP_002219024.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667538|ref|YP_002424895.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415995488|ref|ZP_11560361.1| ribonuclease HI [Acidithiobacillus sp. GGI-221]
gi|254808020|sp|B7J4E2.1|RNH_ACIF2 RecName: Full=Ribonuclease H; Short=RNase H
gi|254808021|sp|B5EMD8.1|RNH_ACIF5 RecName: Full=Ribonuclease H; Short=RNase H
gi|198247224|gb|ACH82817.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519751|gb|ACK80337.1| ribonuclease HI [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339835603|gb|EGQ63262.1| ribonuclease HI [Acidithiobacillus sp. GGI-221]
Length = 158
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
P+ + +FTDG C N +GA +GV+ V TNN E+ A+ L+
Sbjct: 2 PEKIIELFTDGGCRGNPGIGA---WGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLE 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K + RV SDS+++ + +W+ WQ GWR A G V+N+ ++ ELL +
Sbjct: 59 ALKRPSAVRVI--SDSRYLRDGMTQWLAGWQRRGWRTAGGDAVKNR-DIWELLAAVAARH 115
Query: 123 SVKWEFVPGHGNSHGNMKADEM 144
V+WE+V GH N + D +
Sbjct: 116 QVQWEWVRGHSGHIENERVDAL 137
>gi|421492484|ref|ZP_15939844.1| RNHA [Morganella morganii subsp. morganii KT]
gi|455738321|ref|YP_007504587.1| Ribonuclease HI [Morganella morganii subsp. morganii KT]
gi|400193091|gb|EJO26227.1| RNHA [Morganella morganii subsp. morganii KT]
gi|455419884|gb|AGG30214.1| Ribonuclease HI [Morganella morganii subsp. morganii KT]
Length = 156
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDG+C N G Y G L+ +T TNN E+ AI AL+
Sbjct: 3 DKVEIFTDGSCLGNPGPGGYGALLRYKGHEKALSEGFFLT---TNNRMELLAAIVALETL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + + +DSQ++ + + +W+ W+ GWRKAD PV N + Q L I + + +
Sbjct: 60 KRPC--DIVLTTDSQYVRQGITQWIHNWKRRGWRKADKSPVVNVDLWQRLDAAITRHQ-I 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N + DE+AR AA
Sbjct: 117 DWQWVKGHAGHPENERCDELARAAA 141
>gi|332188363|ref|ZP_08390088.1| RNase H family protein [Sphingomonas sp. S17]
gi|332011592|gb|EGI53672.1| RNase H family protein [Sphingomonas sp. S17]
Length = 145
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V + TDGAC N G G+G TNN E+ AI AL K
Sbjct: 4 VEIATDGACKGNPGPG---GWGALIRSGAHEKELSGGEALTTNNRMELMAAIEALNALKR 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DS++++ + +W+ W+ NGWR AD KPV+N E Q LL + + ++W
Sbjct: 61 PCA--VTLSTDSRYVMDGLTKWIHGWKRNGWRTADKKPVKNAELWQALLEAAARHQ-IEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH N +AD++A DAA
Sbjct: 118 KWVKGHAGHPDNERADKLASDAA 140
>gi|73667375|ref|YP_303391.1| ribonuclease H [Ehrlichia canis str. Jake]
gi|123759436|sp|Q3YR62.1|RNH_EHRCJ RecName: Full=Ribonuclease H; Short=RNase H
gi|72394516|gb|AAZ68793.1| RNase H [Ehrlichia canis str. Jake]
Length = 146
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
D N VV++TDGAC N G G+G + + N + G TNN E+ I A
Sbjct: 3 DELNKVVIYTDGACSGNPGPG---GWGAILLFDKNERTICGN-NPDTTNNRMELTAVIEA 58
Query: 61 LKQAKSA-NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
LK K A N+D + +DS ++ + W+ KW+ NGWR A PV+N E E L +
Sbjct: 59 LKFLKVAYNVD---LYTDSIYVKDGITLWIEKWKINGWRTASKLPVKNLELWLE-LDSLA 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMAR 146
+V W +V H + N KAD +AR
Sbjct: 115 SFHNVTWYWVKAHAGNLYNQKADILAR 141
>gi|332306363|ref|YP_004434214.1| Ribonuclease H [Glaciecola sp. 4H-3-7+YE-5]
gi|410641521|ref|ZP_11352041.1| ribonuclease HI [Glaciecola chathamensis S18K6]
gi|410645261|ref|ZP_11355728.1| ribonuclease HI [Glaciecola agarilytica NO2]
gi|332173692|gb|AEE22946.1| Ribonuclease H [Glaciecola sp. 4H-3-7+YE-5]
gi|410135191|dbj|GAC04127.1| ribonuclease HI [Glaciecola agarilytica NO2]
gi|410139054|dbj|GAC10228.1| ribonuclease HI [Glaciecola chathamensis S18K6]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
H+ ++TDG+C N G GYG + FG++ G TNN E+ I AL
Sbjct: 3 HIEIYTDGSCLGNPGPG---GYGAVLLFGKHKKELSQGFT--HTTNNRMELLATIEAL-- 55
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A +V + +DSQ++ + +W+ W+ NGWR +D KPV+N + + L Q+ Q +
Sbjct: 56 ASLTETCKVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRLDEQVNQHQ- 114
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N D +AR+AA
Sbjct: 115 VQWHWVKGHSGHPMNELCDVLARNAA 140
>gi|332526657|ref|ZP_08402762.1| ribonuclease H [Rubrivivax benzoatilyticus JA2]
gi|332110918|gb|EGJ11095.1| ribonuclease H [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N VV++TDGAC N G G+G + GE+ G+ TNN E+ I AL
Sbjct: 2 NEVVIYTDGACKGNPGPG---GWGAWLRSGEHEKELWGGEPL--TTNNRMELMAVIQALT 56
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K +V I +DS+++ + W+ W+ GWR AD KPV+N E Q+ L +
Sbjct: 57 SLKRRC--KVAIYTDSEYVRNGITSWIHGWKQRGWRTADKKPVKNAELWQQ-LDALASSH 113
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 114 DTSWHWVKGHAGDPGNERADALA 136
>gi|238784820|ref|ZP_04628821.1| Ribonuclease H [Yersinia bercovieri ATCC 43970]
gi|238714236|gb|EEQ06247.1| Ribonuclease H [Yersinia bercovieri ATCC 43970]
Length = 154
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHERTFSAGYYLTTNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +V+W
Sbjct: 62 PC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QTHTVQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|387772274|ref|ZP_10128227.1| ribonuclease HI [Haemophilus parahaemolyticus HK385]
gi|386907049|gb|EIJ71765.1| ribonuclease HI [Haemophilus parahaemolyticus HK385]
Length = 164
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ K + TNN E++ I AL K
Sbjct: 15 VEIFTDGSCLGNPGKG---GIGILLRYQLHEKTVSKGYFQTTNNRMELRAVIEALSMLKE 71
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + SDSQ+M +Q+W+ W+ N W+ +D KPV+NK+ L +I Q ++W
Sbjct: 72 PCM--VILNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDLWMALDQEI-QRHQIEW 128
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 129 AWVKGHSGHRENEICDELAKQGA 151
>gi|224582104|ref|YP_002635902.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|254808027|sp|C0Q6N2.1|RNH_SALPC RecName: Full=Ribonuclease H; Short=RNase H
gi|224466631|gb|ACN44461.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 155
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|46143222|ref|ZP_00135642.2| COG0328: Ribonuclease HI [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207907|ref|YP_001053132.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|303249786|ref|ZP_07335990.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307251975|ref|ZP_07533876.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|187611388|sp|A3MZE1.1|RNH_ACTP2 RecName: Full=Ribonuclease H; Short=RNase H
gi|126096699|gb|ABN73527.1| ribonuclease HI [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|302651353|gb|EFL81505.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860667|gb|EFM92679.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK EL L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFSWKKNNWKTANGKPVKNK-ELWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 TWVKGHSGHRENEICDELAKAGA 140
>gi|16759249|ref|NP_454866.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16763646|ref|NP_459261.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142976|ref|NP_806318.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56414617|ref|YP_151692.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161504624|ref|YP_001571736.1| ribonuclease H [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|161615576|ref|YP_001589541.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|162139612|ref|YP_215246.2| ribonuclease H [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|167995092|ref|ZP_02576182.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168232194|ref|ZP_02657252.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238648|ref|ZP_02663706.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168239997|ref|ZP_02664929.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168465316|ref|ZP_02699198.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194442619|ref|YP_002039497.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194447817|ref|YP_002044247.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194468903|ref|ZP_03074887.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194736767|ref|YP_002113280.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197247626|ref|YP_002145263.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197264871|ref|ZP_03164945.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197363545|ref|YP_002143182.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198242273|ref|YP_002214219.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|200390417|ref|ZP_03217028.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927370|ref|ZP_03218572.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205351594|ref|YP_002225395.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855775|ref|YP_002242426.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213162307|ref|ZP_03348017.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213428416|ref|ZP_03361166.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213612767|ref|ZP_03370593.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213646368|ref|ZP_03376421.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213852643|ref|ZP_03382175.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|238913717|ref|ZP_04657554.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289828783|ref|ZP_06546542.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|374979752|ref|ZP_09721084.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|374999997|ref|ZP_09724337.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375113134|ref|ZP_09758304.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|375117696|ref|ZP_09762863.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|375122372|ref|ZP_09767536.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|378443709|ref|YP_005231341.1| RNase H [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|378448572|ref|YP_005235931.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698236|ref|YP_005180193.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378956355|ref|YP_005213842.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378960778|ref|YP_005218264.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
gi|378982800|ref|YP_005245955.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378987662|ref|YP_005250826.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699479|ref|YP_005241207.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383495081|ref|YP_005395770.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386590149|ref|YP_006086549.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|416424521|ref|ZP_11691702.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430792|ref|ZP_11695136.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439916|ref|ZP_11700497.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416444726|ref|ZP_11703959.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453931|ref|ZP_11710005.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458402|ref|ZP_11712921.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416469919|ref|ZP_11718660.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416478204|ref|ZP_11721672.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416484183|ref|ZP_11723979.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416503145|ref|ZP_11732884.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416510656|ref|ZP_11737254.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416513350|ref|ZP_11737916.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416526475|ref|ZP_11742380.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536319|ref|ZP_11748386.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416542155|ref|ZP_11751325.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416553717|ref|ZP_11757846.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416561873|ref|ZP_11761764.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416568035|ref|ZP_11764474.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416576504|ref|ZP_11769086.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416583904|ref|ZP_11773660.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595253|ref|ZP_11781067.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596422|ref|ZP_11781314.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605571|ref|ZP_11787003.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416610285|ref|ZP_11789957.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416620852|ref|ZP_11795955.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416632787|ref|ZP_11801501.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416639944|ref|ZP_11804858.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416648317|ref|ZP_11808962.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416655696|ref|ZP_11812689.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416671108|ref|ZP_11820597.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416678277|ref|ZP_11822582.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416694075|ref|ZP_11826939.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416706634|ref|ZP_11831823.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713049|ref|ZP_11836691.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416719620|ref|ZP_11841476.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723757|ref|ZP_11844423.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416734339|ref|ZP_11850994.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416745455|ref|ZP_11857387.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759299|ref|ZP_11864160.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764570|ref|ZP_11868174.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766979|ref|ZP_11869595.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|417355785|ref|ZP_12131504.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|418484420|ref|ZP_13053418.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418486182|ref|ZP_13055154.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493341|ref|ZP_13059809.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497915|ref|ZP_13064330.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504210|ref|ZP_13070568.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418507352|ref|ZP_13073675.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418514143|ref|ZP_13080354.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
gi|418525431|ref|ZP_13091411.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|418761039|ref|ZP_13317188.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|418767867|ref|ZP_13323924.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|418770913|ref|ZP_13326932.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|418775278|ref|ZP_13331237.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|418781543|ref|ZP_13337425.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|418782705|ref|ZP_13338565.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|418791186|ref|ZP_13346949.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|418793686|ref|ZP_13349412.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|418799734|ref|ZP_13355400.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|418803920|ref|ZP_13359533.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|418807405|ref|ZP_13362963.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|418811946|ref|ZP_13367470.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|418815307|ref|ZP_13370808.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|418821511|ref|ZP_13376936.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|418824466|ref|ZP_13379826.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22462]
gi|418831582|ref|ZP_13386532.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|418835584|ref|ZP_13390475.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|418838567|ref|ZP_13393409.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|418845954|ref|ZP_13400731.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|418848771|ref|ZP_13403506.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
gi|418855005|ref|ZP_13409668.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|418858355|ref|ZP_13412971.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|418864094|ref|ZP_13418629.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
gi|418869422|ref|ZP_13423858.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
gi|419727363|ref|ZP_14254331.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733665|ref|ZP_14260560.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419741444|ref|ZP_14268139.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745440|ref|ZP_14272072.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419749382|ref|ZP_14275864.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|419790871|ref|ZP_14316538.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|419794166|ref|ZP_14319782.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|421357932|ref|ZP_15808240.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365078|ref|ZP_15815300.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369151|ref|ZP_15819335.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372596|ref|ZP_15822745.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376208|ref|ZP_15826317.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380779|ref|ZP_15830841.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384144|ref|ZP_15834173.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392643|ref|ZP_15842600.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395840|ref|ZP_15845772.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398500|ref|ZP_15848405.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405319|ref|ZP_15855154.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407919|ref|ZP_15857726.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414007|ref|ZP_15863753.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419607|ref|ZP_15869299.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423717|ref|ZP_15873368.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425470|ref|ZP_15875105.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429818|ref|ZP_15879412.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421435149|ref|ZP_15884690.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440908|ref|ZP_15890383.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445693|ref|ZP_15895114.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451355|ref|ZP_15900721.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|421572800|ref|ZP_16018446.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421577707|ref|ZP_16023295.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421582297|ref|ZP_16027838.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421584303|ref|ZP_16029811.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|421882984|ref|ZP_16314231.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422024384|ref|ZP_16370869.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029402|ref|ZP_16375666.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427545176|ref|ZP_18926174.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427560986|ref|ZP_18930939.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427598995|ref|ZP_18940161.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427602218|ref|ZP_18940540.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427626623|ref|ZP_18945448.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427649818|ref|ZP_18950203.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659601|ref|ZP_18955156.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664718|ref|ZP_18959903.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427693513|ref|ZP_18964797.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|436618859|ref|ZP_20514508.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436725666|ref|ZP_20519058.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436803137|ref|ZP_20525635.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810433|ref|ZP_20529471.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813820|ref|ZP_20532008.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831544|ref|ZP_20536212.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849618|ref|ZP_20540755.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856030|ref|ZP_20545135.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863017|ref|ZP_20549560.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871491|ref|ZP_20554665.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878642|ref|ZP_20559061.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886757|ref|ZP_20563163.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894576|ref|ZP_20568054.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904703|ref|ZP_20574720.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909822|ref|ZP_20576407.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918074|ref|ZP_20581245.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925704|ref|ZP_20586136.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934116|ref|ZP_20590120.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941459|ref|ZP_20595019.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949449|ref|ZP_20599463.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959500|ref|ZP_20603697.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975282|ref|ZP_20611558.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987027|ref|ZP_20615671.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999563|ref|ZP_20620136.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009884|ref|ZP_20623864.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018321|ref|ZP_20626813.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035395|ref|ZP_20633321.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046758|ref|ZP_20638574.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049509|ref|ZP_20640129.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056678|ref|ZP_20644046.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065131|ref|ZP_20648816.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079092|ref|ZP_20656586.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082114|ref|ZP_20658189.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090139|ref|ZP_20662711.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115068|ref|ZP_20669290.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122708|ref|ZP_20672550.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132811|ref|ZP_20678261.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137919|ref|ZP_20680714.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149232|ref|ZP_20688105.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151811|ref|ZP_20689482.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160763|ref|ZP_20694836.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169478|ref|ZP_20699798.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176673|ref|ZP_20703477.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437181989|ref|ZP_20706748.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437203114|ref|ZP_20712058.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259541|ref|ZP_20717061.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272553|ref|ZP_20724303.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276722|ref|ZP_20726536.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288191|ref|ZP_20730525.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309691|ref|ZP_20735619.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437328985|ref|ZP_20741075.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338686|ref|ZP_20743891.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437413062|ref|ZP_20753484.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456110|ref|ZP_20760229.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470171|ref|ZP_20765186.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485112|ref|ZP_20769224.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499213|ref|ZP_20774022.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437531221|ref|ZP_20780701.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554584|ref|ZP_20784356.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571529|ref|ZP_20788638.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586098|ref|ZP_20793185.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602531|ref|ZP_20798538.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625873|ref|ZP_20805726.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643075|ref|ZP_20808337.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664551|ref|ZP_20814354.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675749|ref|ZP_20816817.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437699330|ref|ZP_20823459.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710185|ref|ZP_20826290.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437733987|ref|ZP_20832139.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437786549|ref|ZP_20836864.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802330|ref|ZP_20838295.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437820258|ref|ZP_20843154.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|437870409|ref|ZP_20848365.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438064948|ref|ZP_20856858.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090856|ref|ZP_20860685.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105099|ref|ZP_20866165.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114624|ref|ZP_20870240.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438121371|ref|ZP_20872159.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|440770373|ref|ZP_20949323.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|440771996|ref|ZP_20950906.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|445131444|ref|ZP_21381742.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445144009|ref|ZP_21386758.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
gi|445153375|ref|ZP_21391370.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
gi|445175255|ref|ZP_21397322.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445215178|ref|ZP_21401824.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445233444|ref|ZP_21406413.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445296813|ref|ZP_21411277.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445339259|ref|ZP_21416321.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343691|ref|ZP_21417160.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362403|ref|ZP_21424163.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|452121436|ref|YP_007471684.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
gi|61233311|sp|P0A2B9.1|RNH_SALTY RecName: Full=Ribonuclease HI; Short=RNase HI; AltName:
Full=Ribonuclease H; Short=RNase H
gi|61233317|sp|P0A2C0.1|RNH_SALTI RecName: Full=Ribonuclease HI; Short=RNase HI
gi|81821397|sp|Q5PFD8.1|RNH_SALPA RecName: Full=Ribonuclease H; Short=RNase H
gi|187611424|sp|Q57SZ6.2|RNH_SALCH RecName: Full=Ribonuclease H; Short=RNase H
gi|189043708|sp|A9MPF1.1|RNH_SALAR RecName: Full=Ribonuclease H; Short=RNase H
gi|189043709|sp|A9MZ19.1|RNH_SALPB RecName: Full=Ribonuclease H; Short=RNase H
gi|238689766|sp|B4TYH0.1|RNH_SALSV RecName: Full=Ribonuclease H; Short=RNase H
gi|238689949|sp|B5BDW5.1|RNH_SALPK RecName: Full=Ribonuclease H; Short=RNase H
gi|238690067|sp|B5F8X2.1|RNH_SALA4 RecName: Full=Ribonuclease H; Short=RNase H
gi|238690314|sp|B5FJ58.1|RNH_SALDC RecName: Full=Ribonuclease H; Short=RNase H
gi|238690459|sp|B5R449.1|RNH_SALEP RecName: Full=Ribonuclease H; Short=RNase H
gi|238690469|sp|B5R5L3.1|RNH_SALG2 RecName: Full=Ribonuclease H; Short=RNase H
gi|238690681|sp|B4TK85.1|RNH_SALHS RecName: Full=Ribonuclease H; Short=RNase H
gi|238693525|sp|B4SV39.1|RNH_SALNS RecName: Full=Ribonuclease H; Short=RNase H
gi|25289240|pir||AE0534 ribonuclease H [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|48822|emb|CAA40447.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16418763|gb|AAL19220.1| RNase HI [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16501540|emb|CAD08717.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi]
gi|29138608|gb|AAO70178.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56128874|gb|AAV78380.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|160865971|gb|ABX22594.1| hypothetical protein SARI_02739 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161364940|gb|ABX68708.1| hypothetical protein SPAB_03351 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401282|gb|ACF61504.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406121|gb|ACF66340.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194455267|gb|EDX44106.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194712269|gb|ACF91490.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195631809|gb|EDX50329.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197095022|emb|CAR60568.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197211329|gb|ACH48726.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197243126|gb|EDY25746.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197288562|gb|EDY27939.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936789|gb|ACH74122.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|199602862|gb|EDZ01408.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204324035|gb|EDZ09230.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205271375|emb|CAR36168.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205327157|gb|EDZ13921.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205333469|gb|EDZ20233.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205340000|gb|EDZ26764.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|206707578|emb|CAR31852.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261245488|emb|CBG23278.1| RNase H [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267991950|gb|ACY86835.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156884|emb|CBW16360.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911228|dbj|BAJ35202.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224917|gb|EFX49978.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614543|gb|EFY11472.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620061|gb|EFY16933.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623356|gb|EFY20195.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629346|gb|EFY26125.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632066|gb|EFY28820.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637196|gb|EFY33898.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640309|gb|EFY36969.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645924|gb|EFY42444.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652377|gb|EFY48731.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322652581|gb|EFY48931.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660391|gb|EFY56627.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664544|gb|EFY60737.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669403|gb|EFY65553.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670949|gb|EFY67082.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678812|gb|EFY74867.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681841|gb|EFY77866.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687967|gb|EFY83933.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322713280|gb|EFZ04851.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|323128578|gb|ADX16008.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323194321|gb|EFZ79516.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197737|gb|EFZ82869.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203467|gb|EFZ88492.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323213393|gb|EFZ98194.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214686|gb|EFZ99437.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221461|gb|EGA05877.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323226221|gb|EGA10437.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229991|gb|EGA14111.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233730|gb|EGA17819.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238576|gb|EGA22634.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244264|gb|EGA28273.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246425|gb|EGA30408.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323258047|gb|EGA41726.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259855|gb|EGA43486.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265130|gb|EGA48629.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272693|gb|EGA56100.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326621963|gb|EGE28308.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|326626622|gb|EGE32965.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|332987209|gb|AEF06192.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|353074685|gb|EHB40445.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353597939|gb|EHC54510.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|357206966|gb|AET55012.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|363549325|gb|EHL33682.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363557527|gb|EHL41732.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363562361|gb|EHL46460.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565425|gb|EHL49461.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363568278|gb|EHL52266.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363573612|gb|EHL57490.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363578137|gb|EHL61953.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366058664|gb|EHN22947.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065516|gb|EHN29706.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366071052|gb|EHN35152.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073692|gb|EHN37756.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366076799|gb|EHN40834.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366079963|gb|EHN43944.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
gi|366081420|gb|EHN45365.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366829311|gb|EHN56187.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206200|gb|EHP19704.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|374354650|gb|AEZ46411.1| Ribonuclease H [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
gi|379987406|emb|CCF86504.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380461902|gb|AFD57305.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381291700|gb|EIC32933.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381298852|gb|EIC39926.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300945|gb|EIC42001.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381305519|gb|EIC46429.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381311456|gb|EIC52273.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383797193|gb|AFH44275.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392612750|gb|EIW95218.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|392616256|gb|EIW98691.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|392733087|gb|EIZ90291.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|392735922|gb|EIZ93091.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|392741444|gb|EIZ98547.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|392746875|gb|EJA03879.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|392748781|gb|EJA05763.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|392755275|gb|EJA12185.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|392759520|gb|EJA16372.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|392763366|gb|EJA20173.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|392764052|gb|EJA20858.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|392772014|gb|EJA28722.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|392776686|gb|EJA33372.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|392778668|gb|EJA35339.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|392791106|gb|EJA47599.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|392791759|gb|EJA48227.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|392798479|gb|EJA54750.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|392802859|gb|EJA59060.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|392811956|gb|EJA67954.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|392814393|gb|EJA70344.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|392822118|gb|EJA77930.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
gi|392822554|gb|EJA78364.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22462]
gi|392823179|gb|EJA78982.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|392831355|gb|EJA86988.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
gi|392832757|gb|EJA88373.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|392836570|gb|EJA92152.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
gi|395980589|gb|EJH89812.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983446|gb|EJH92639.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990169|gb|EJH99301.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000246|gb|EJI09261.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003435|gb|EJI12423.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003828|gb|EJI12815.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008204|gb|EJI17139.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010884|gb|EJI19795.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020706|gb|EJI29547.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024630|gb|EJI33416.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029851|gb|EJI38587.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030290|gb|EJI39024.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035747|gb|EJI44419.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035765|gb|EJI44436.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037101|gb|EJI45752.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396056741|gb|EJI65214.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057135|gb|EJI65607.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396058232|gb|EJI66698.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396064110|gb|EJI72498.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064128|gb|EJI72515.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065847|gb|EJI74215.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|402515734|gb|EJW23148.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402516295|gb|EJW23708.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402516626|gb|EJW24037.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402530821|gb|EJW38034.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414023907|gb|EKT07318.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414024251|gb|EKT07643.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414025784|gb|EKT09084.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414025812|gb|EKT09111.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414037901|gb|EKT20638.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414042903|gb|EKT25427.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414052327|gb|EKT34379.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053736|gb|EKT35714.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414058098|gb|EKT39805.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414062077|gb|EKT43433.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067627|gb|EKT47943.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|434943277|gb|ELL49424.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434956811|gb|ELL50517.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964925|gb|ELL57888.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434965615|gb|ELL58553.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434975328|gb|ELL67638.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982501|gb|ELL74324.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434983684|gb|ELL75472.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434988195|gb|ELL79794.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991463|gb|ELL82951.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997544|gb|ELL88783.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000706|gb|ELL91828.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007318|gb|ELL98171.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011289|gb|ELM02009.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017225|gb|ELM07733.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018390|gb|ELM08865.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028195|gb|ELM18274.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030806|gb|ELM20795.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040097|gb|ELM29866.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041256|gb|ELM30998.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045290|gb|ELM34935.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050233|gb|ELM39738.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054147|gb|ELM43583.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054165|gb|ELM43600.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059608|gb|ELM48883.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060104|gb|ELM49374.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066784|gb|ELM55855.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074762|gb|ELM63585.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078228|gb|ELM66972.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081913|gb|ELM70554.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096196|gb|ELM84468.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097047|gb|ELM85309.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099779|gb|ELM87970.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101448|gb|ELM89602.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111282|gb|ELM99187.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115157|gb|ELN02947.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115314|gb|ELN03085.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122358|gb|ELN09880.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123534|gb|ELN11027.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131041|gb|ELN18269.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134553|gb|ELN21681.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143284|gb|ELN30150.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146276|gb|ELN33069.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148337|gb|ELN35064.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155398|gb|ELN41942.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435164929|gb|ELN50989.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435165461|gb|ELN51501.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435167885|gb|ELN53738.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173563|gb|ELN59060.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183591|gb|ELN68552.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185181|gb|ELN70069.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190516|gb|ELN75098.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196077|gb|ELN80433.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203097|gb|ELN86883.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435206817|gb|ELN90309.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435212105|gb|ELN95139.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435215056|gb|ELN97804.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216287|gb|ELN98762.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435224136|gb|ELO06120.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435243460|gb|ELO23717.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243945|gb|ELO24199.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435247982|gb|ELO27903.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252640|gb|ELO32168.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260219|gb|ELO39432.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260369|gb|ELO39568.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265679|gb|ELO44484.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435274582|gb|ELO52684.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435275110|gb|ELO53197.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277363|gb|ELO55316.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435286912|gb|ELO64147.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435288958|gb|ELO65948.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435296693|gb|ELO73055.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435303688|gb|ELO79527.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435307207|gb|ELO82391.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435312882|gb|ELO86696.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435316193|gb|ELO89384.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435321708|gb|ELO94099.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435329023|gb|ELP00481.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435335111|gb|ELP05445.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|436411517|gb|ELP09466.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|436420224|gb|ELP18092.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|444847149|gb|ELX72299.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
gi|444850270|gb|ELX75372.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444852583|gb|ELX77660.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
gi|444858593|gb|ELX83576.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444859332|gb|ELX84282.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444861307|gb|ELX86191.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444872475|gb|ELX96814.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881495|gb|ELY05539.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882486|gb|ELY06449.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884082|gb|ELY07926.1| ribonuclease H [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|451910440|gb|AGF82246.1| ribonuclease H [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
Length = 155
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|337279966|ref|YP_004619438.1| ribonuclease HI [Ramlibacter tataouinensis TTB310]
gi|334731043|gb|AEG93419.1| Candidate ribonuclease HI [Ramlibacter tataouinensis TTB310]
Length = 148
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF-GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
NH+ ++TDGAC N G G+GV + G G TNN E+ I AL
Sbjct: 2 NHIEIYTDGACKGNPGPG---GWGVLLKSAGTEKEMFGGELG-TTNNRMELTAVIQALGA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIGQ 120
K V + DSQ+++K + EW+P W++ GWR A PV+N E +L +L+ + G
Sbjct: 58 LKRPC--NVTLYLDSQYVLKGMTEWLPGWKAKGWRTAGKTPVKNVELWQQLDKLVREGGH 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++ W +V GH GN +AD +A
Sbjct: 116 --TIDWRWVRGHNGDPGNERADALA 138
>gi|119503278|ref|ZP_01625362.1| ribonuclease H [marine gamma proteobacterium HTCC2080]
gi|119460924|gb|EAW42015.1| ribonuclease H [marine gamma proteobacterium HTCC2080]
Length = 145
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V FTDGAC N G G+GV +N G TNN E+ AI AL K
Sbjct: 4 VEAFTDGACKGNPGPG---GWGVLLRMDNQSREIFGGDGATTNNRMELTAAIEALAALKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + +DS ++ V WM W+ NGWR A KPV+N++ Q L Q+ + E V W
Sbjct: 61 ACT--VELTTDSTYVKDGVTRWMENWERNGWRTAAKKPVKNQDLWQALKAQVARHE-VNW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N AD +A
Sbjct: 118 HWVKGHSGHPENELADMLA 136
>gi|417331364|ref|ZP_12115630.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585726|gb|EHC45486.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 167
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 17 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 73
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 74 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 130
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 131 VWVKGHAGHPENERCDELARAAA 153
>gi|163801803|ref|ZP_02195700.1| ribonuclease H [Vibrio sp. AND4]
gi|159174311|gb|EDP59115.1| ribonuclease H [Vibrio sp. AND4]
Length = 154
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
HV +FTDG+C N G GYG+ K TNN E+ A+ AL+ K
Sbjct: 4 HVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLAAVVALQTLK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ W+ AD KPV+N + Q L + + + V
Sbjct: 61 EPC--QVSLTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQALDKETARHQ-VD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N D++AR AA
Sbjct: 118 WHWVKGHAGHRENEICDDLARAAA 141
>gi|157826199|ref|YP_001493919.1| ribonuclease H [Rickettsia akari str. Hartford]
gi|189043706|sp|A8GPT6.1|RNH_RICAH RecName: Full=Ribonuclease H; Short=RNase H
gi|157800157|gb|ABV75411.1| ribonuclease H [Rickettsia akari str. Hartford]
Length = 152
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK- 62
++ VV++TDGAC N G G+G N+ TNN EI A ALK
Sbjct: 2 NSKVVIYTDGACAGNPGPG---GWGALLKFNDASKEIFGYELDTTNNRMEITAAFEALKI 58
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS N++ I +DS+++ + + W+ W N W K++ +PV+N + Q+L ++ +
Sbjct: 59 LKKSCNVE---IYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKNADLWQKLYAELSK-H 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH N+ GN+ AD++A
Sbjct: 115 TIIWKWVKGHANNSGNIAADKLA 137
>gi|170743350|ref|YP_001772005.1| ribonuclease H [Methylobacterium sp. 4-46]
gi|168197624|gb|ACA19571.1| ribonuclease H [Methylobacterium sp. 4-46]
Length = 223
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGV-YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ- 63
+V+ DG C N G G+GV P+ + G R TNN E+ AI AL+
Sbjct: 2 RTIVYADGGCDPNPGPG---GWGVVILAPEGPVELCGG-DPRSTNNRMELTAAISALEHF 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ A I+ C DSQ+++K V EW+ W++ GWR G+ V+N+ +L E L +
Sbjct: 58 PEGAAIEMRC---DSQYVVKSVTEWLRGWKAKGWRTTTGE-VKNR-DLMERLDALNARRD 112
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN +AD +A
Sbjct: 113 VRWVWVRGHAGEEGNERADRLA 134
>gi|148555602|ref|YP_001263184.1| ribonuclease H [Sphingomonas wittichii RW1]
gi|148500792|gb|ABQ69046.1| ribonuclease H [Sphingomonas wittichii RW1]
Length = 146
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGV----YFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
V + TDGAC P G GA +G G NP TNN E+ AI
Sbjct: 7 VEIATDGACKGNPGRGGWGALLRFGATEKEMSGAENP----------STNNRMELMAAIR 56
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
AL+ K RV + +DS++++ + +W+ W+ NGW+ AD KPV+N E Q LL
Sbjct: 57 ALEALKKPC--RVKLSTDSRYVMDGLTKWIHGWRKNGWKTADKKPVKNAELWQRLLDAAA 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
++W +V GH N +AD++A DAA
Sbjct: 115 P-HRIEWIWVKGHAGHPDNERADKLASDAA 143
>gi|350572240|ref|ZP_08940545.1| ribonuclease HI [Neisseria wadsworthii 9715]
gi|349790496|gb|EGZ44405.1| ribonuclease HI [Neisseria wadsworthii 9715]
Length = 146
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D V ++TDGAC N G G+GV +G + G TNN E+ I L
Sbjct: 2 DKTVYLYTDGACKGNPGAG---GWGVLLRYGSHEKELFGG--AAETTNNRMELTAVIEGL 56
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K K RV I +DSQ++ ++ W+ W+ NGW+ + KPV+N++ +EL IG
Sbjct: 57 KTLKRRC--RVVICTDSQYVKNGMENWIHGWKKNGWKTSAKKPVKNEDLWRELDSLIGGH 114
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
E V W+++ GH N +ADE+A A
Sbjct: 115 E-VSWQWIKGHTGHPENERADELANKGA 141
>gi|168261339|ref|ZP_02683312.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|205350040|gb|EDZ36671.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
Length = 155
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAERKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|39997169|ref|NP_953120.1| ribonuclease H [Geobacter sulfurreducens PCA]
gi|409912593|ref|YP_006891058.1| ribonuclease HI [Geobacter sulfurreducens KN400]
gi|81832016|sp|Q74BH0.1|RNH_GEOSL RecName: Full=Ribonuclease H; Short=RNase H
gi|39984059|gb|AAR35447.1| ribonuclease HI [Geobacter sulfurreducens PCA]
gi|298506182|gb|ADI84905.1| ribonuclease HI [Geobacter sulfurreducens KN400]
Length = 149
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V VF DGAC N VG GYG + G TNN E+ AI AL+
Sbjct: 4 EVEVFCDGACSGNPGVG---GYGAILRYGSAEKELSGADGDTTNNRMELTAAIRALEA-- 58
Query: 66 SANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ R C I +DSQ+++K + EW+ W GW + +PV N+ +L E L ++
Sbjct: 59 ---LSRPCAVTITTDSQYLVKGMTEWLSGWVRRGWVNSKKEPVLNR-DLWERLRELTGKH 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDA 148
V+W +V GH N + D +AR A
Sbjct: 115 QVRWVWVRGHNGHPENERCDALARRA 140
>gi|337270051|ref|YP_004614106.1| ribonuclease H [Mesorhizobium opportunistum WSM2075]
gi|336030361|gb|AEH90012.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
Length = 176
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+V +FTDGAC N G G+G N TNN E+ AI AL K
Sbjct: 4 NVEIFTDGACSGNPGPG---GWGAILRFNGATKELSGGEAETTNNRMELLAAISALNALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L + + V
Sbjct: 61 EPCT--VELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNG-ELWQALDEANRRHKVT 117
Query: 126 WEFVPGHGNSHGNMKADEMAR 146
W +V GH N +ADE+AR
Sbjct: 118 WNWVKGHDGHVENERADELAR 138
>gi|197106350|ref|YP_002131727.1| ribonuclease H [Phenylobacterium zucineum HLK1]
gi|238690129|sp|B4R8T3.1|RNH_PHEZH RecName: Full=Ribonuclease H; Short=RNase H
gi|196479770|gb|ACG79298.1| ribonuclease HI [Phenylobacterium zucineum HLK1]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAI 58
M P+ VV++TDGAC N G G+G GE G+ TNN E+ AI
Sbjct: 1 MTPE--VVIYTDGACSGNPGPG---GWGAILIHGEREKELCGGEAA--TTNNRMELMAAI 53
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
AL+ K RV + +DSQ++ K + EW+ W+ GW AD KPV+N ++L + L
Sbjct: 54 QALEALKRPC--RVELHTDSQYVQKGIHEWIHGWKKRGWLTADKKPVKN-DDLWKRLDAA 110
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMAR 146
V W +V GH N +AD +AR
Sbjct: 111 RLRHHVDWRWVKGHAGHELNERADALAR 138
>gi|165975882|ref|YP_001651475.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|303252666|ref|ZP_07338829.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307245255|ref|ZP_07527346.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307254202|ref|ZP_07536047.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307256469|ref|ZP_07538251.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307258667|ref|ZP_07540402.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|165875983|gb|ABY69031.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|302648634|gb|EFL78827.1| ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306853899|gb|EFM86113.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306862902|gb|EFM94851.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306865099|gb|EFM97000.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306867324|gb|EFM99177.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 153
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK EL L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-ELWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 TWVKGHSGHRENEICDELAKAGA 140
>gi|114770094|ref|ZP_01447632.1| ribonuclease HI [Rhodobacterales bacterium HTCC2255]
gi|114548931|gb|EAU51814.1| ribonuclease HI [alpha proteobacterium HTCC2255]
Length = 150
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYF--GENNPL----NVAGKVTGRVTNNNAEIQG 56
PD + +TDGAC N G G+GV E + + N++G T TNN E+
Sbjct: 2 PD--LYAYTDGACSGNPGPG---GWGVLMIAKEGSKIIKTKNLSGG-TAETTNNQMELTA 55
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
AI AL+ A ++ + +DS ++ + +W+ W+ NGW+ A KPV+N EEL + L
Sbjct: 56 AIMALEAL--AKPSKITLITDSSYVKDGITKWIFGWKKNGWKTAAKKPVKN-EELWKRLE 112
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMARD 147
++ V WE++ GH N +ADE+AR+
Sbjct: 113 LATELHDVSWEWIKGHAGHFENEQADELARN 143
>gi|383759126|ref|YP_005438111.1| ribonuclease H [Rubrivivax gelatinosus IL144]
gi|381379795|dbj|BAL96612.1| ribonuclease H [Rubrivivax gelatinosus IL144]
Length = 145
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N VV++TDGAC N G G+G + GE+ G+ TNN E+ I AL
Sbjct: 2 NEVVIYTDGACKGNPGPG---GWGAWLRSGEHEKELWGGEPL--TTNNRMELMAVIQALG 56
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K +V I +DS+++ + W+ W+ GWR AD KPV+N E Q+ L +
Sbjct: 57 SLKRRC--KVAIYTDSEYVRNGITSWIHGWKQRGWRTADKKPVKNAELWQQ-LEALASSH 113
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 114 DTSWHWVKGHAGDPGNERADALA 136
>gi|422844571|ref|ZP_16891281.1| ribonuclease H1 [Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325685289|gb|EGD27403.1| ribonuclease H1 [Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 255
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 9 VFTDGACPRNG--KVG-------ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+FTDG C NG K G A+ Y + +G L+ +G G TNN E+ +
Sbjct: 97 IFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYG-GQKLSTSGGRFG-ATNNEMEMTAFLE 154
Query: 60 ALKQAKSANIDR--VCIKSDSQFMIKCVQE------WMPKWQSNGWRKADGKPVQNKEEL 111
+LK+ + ++ + DSQ++IK V + W+ WQ GW+KADG PV N+E
Sbjct: 155 SLKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELW 214
Query: 112 QELLHQIGQMESVKWEFVPGHGNSHGN 138
QE+ +I + ++E+V GH NS GN
Sbjct: 215 QEIAKEIAKFAQPEFEWVKGHANSAGN 241
>gi|433776322|ref|YP_007306789.1| ribonuclease HI [Mesorhizobium australicum WSM2073]
gi|433668337|gb|AGB47413.1| ribonuclease HI [Mesorhizobium australicum WSM2073]
Length = 177
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDGAC N G G+G N TNN E+ AI AL K
Sbjct: 4 QVEIFTDGACSGNPGPG---GWGAILRFNGTTKELFGGEAETTNNRMELLAAISALNALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DS++++ + +W+ W+ NGW+ AD KPV+N EL + L + + V
Sbjct: 61 EPCT--VELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNG-ELWQALDEANRRHKVT 117
Query: 126 WEFVPGHGNSHGNMKADEMARD 147
W +V GH N +ADE+AR+
Sbjct: 118 WNWVKGHAGHIENERADELARE 139
>gi|397687148|ref|YP_006524467.1| ribonuclease H [Pseudomonas stutzeri DSM 10701]
gi|395808704|gb|AFN78109.1| ribonuclease H [Pseudomonas stutzeri DSM 10701]
Length = 150
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V ++TDGAC N G VY G L T TNN E+ AI AL++
Sbjct: 3 DEAVEIYTDGACKGNPGPGGWGALLVYKGVERELWGGEAET---TNNRMELMAAIRALEE 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++++ + +WMP W+ GW+ A +PV+N +L LL +
Sbjct: 60 LKRPC--QVRLITDSQYVMQGINDWMPNWKKRGWKTAAKQPVKNA-DLWRLLDEQVNRHQ 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V W++V GH GN AD +A
Sbjct: 117 VTWKWVRGHTGHPGNEHADLLA 138
>gi|407771971|ref|ZP_11119314.1| ribonuclease H [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407285032|gb|EKF10546.1| ribonuclease H [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 147
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V ++TDGAC N G G+G N TNN E+ AI AL+
Sbjct: 6 NKRVEIYTDGACSGNPGPG---GWGAILRFNGVEKEMSGGDPETTNNRMEMMAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V I +DS ++ + +W+ WQ GW+ AD KPV+N E Q LL + +
Sbjct: 63 LKRPCV--VDIYTDSSYVRDGITKWIFGWQKRGWKTADKKPVKNVELWQRLLEAL-KTHK 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N + DE+AR A
Sbjct: 120 VEWHWVKGHAGHPENERCDELARQAV 145
>gi|358375403|dbj|GAA91986.1| hypothetical protein AKAW_10100 [Aspergillus kawachii IFO 4308]
Length = 243
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 18/160 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALKQA 64
+V+ DGAC NGK GA A GVY G ++ N + +++ R TN AE+ AL A
Sbjct: 80 IVIAIDGACRNNGKTGARASIGVYHGPDHGWNESARLSPELRQTNQVAELAACRIALIDA 139
Query: 65 KSANID-------------RVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNK 108
+ + R+C IKSDS+++++ + EW+ KW++NGW A G PV N+
Sbjct: 140 CTIQKNWGDIGEEIKGEKGRLCTVVIKSDSEYVVRGMTEWIYKWKANGWVNAKGLPVTNR 199
Query: 109 EELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
E + + +E+ + H N +AD++A A
Sbjct: 200 EHFDRIDSIVQSLENEQVTVQFWHVPREYNQEADKLATSA 239
>gi|227821114|ref|YP_002825084.1| ribonuclease H [Sinorhizobium fredii NGR234]
gi|227340113|gb|ACP24331.1| ribonuclease H [Sinorhizobium fredii NGR234]
Length = 153
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKEMFGGEA--ETTNNRMELMAAISALNA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + +DS++++ + +W+ W+ NGW+ D KPV+N EL + L +
Sbjct: 58 LKQPC--EVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNG-ELWQALDEARDRHQ 114
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
V W +V GH N +ADE+AR
Sbjct: 115 VTWHWVKGHAGHPENERADELAR 137
>gi|187929120|ref|YP_001899607.1| ribonuclease H [Ralstonia pickettii 12J]
gi|187726010|gb|ACD27175.1| ribonuclease H [Ralstonia pickettii 12J]
Length = 148
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V V++DGAC N +G G+G G + G+ TNN E+ I A +
Sbjct: 4 VTVYSDGACKGNPGLG---GWGTVLVSGSHEKELFGGETL--TTNNRMELMAVIEAFRAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V
Sbjct: 59 KRPC--RVQVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVAGHEV 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 116 SWHWVKGHAGHPGNERADALA 136
>gi|77458413|ref|YP_347918.1| ribonuclease H [Pseudomonas fluorescens Pf0-1]
gi|123772231|sp|Q3KE77.1|RNH_PSEPF RecName: Full=Ribonuclease H; Short=RNase H
gi|77382416|gb|ABA73929.1| ribonuclease HI [Pseudomonas fluorescens Pf0-1]
gi|258450509|gb|ACV72184.1| ribonuclease H [uncultured organism]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V +FTDGAC N G V G L G+ TNN E+ GAI L+
Sbjct: 6 DSVELFTDGACKGNPGPGGWGALLVCKGVEKEL-WGGEAN--TTNNRMELLGAIRGLEAL 62
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + + L Q+ + V
Sbjct: 63 KRPC--EVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKALDEQVNR-HKV 119
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH HGN +AD++A
Sbjct: 120 TWKWVRGHIGHHGNERADQLA 140
>gi|443927459|gb|ELU45942.1| RNase H domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 631
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V+TDG+C NG+ A+A Y VYFG ++P N A + G+ TNN EI G I AL+
Sbjct: 355 IEVWTDGSCLGNGRENAAAAYAVYFGPDDPRNEAARAPGKQTNNVGEIYGVIRALEIVDE 414
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ I +DS++ I+ + W+P W+ G + KP N ++ + + V+
Sbjct: 415 G-AKHLVIYTDSKYTIESLG-WLPGWKKRGGMNSSNKPAMNYSMIK-YMDALMARHRVEL 471
Query: 127 EFVPGHGNSHGN 138
V GH N GN
Sbjct: 472 VHVRGHQNDAGN 483
>gi|342880055|gb|EGU81266.1| hypothetical protein FOXB_08222 [Fusarium oxysporum Fo5176]
Length = 223
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAK 65
+ + DGAC NG A A GV+ GE + N + VTN AE+ I AL+QA
Sbjct: 68 IFIAVDGACRGNGTPDAKAAIGVFVGETSSFNRCLLLRQVPVTNQIAELNAGIVALEQAM 127
Query: 66 SA---------NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
+ +V IK+DS++++K + EW+ KW++NG+R A PV+N + + L
Sbjct: 128 EILRTKALGEEPLHKVVIKADSEYLVKGMTEWVFKWETNGYRNAKRDPVKNSDLFKRLNR 187
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148
+ + + E + H N +AD++A A
Sbjct: 188 LVEDLNASNVEVLFWHVPRDMNKEADKLANQA 219
>gi|120599050|ref|YP_963624.1| ribonuclease H [Shewanella sp. W3-18-1]
gi|146292879|ref|YP_001183303.1| ribonuclease H [Shewanella putrefaciens CN-32]
gi|386313572|ref|YP_006009737.1| ribonuclease H [Shewanella putrefaciens 200]
gi|189043716|sp|A4Y6C1.1|RNH_SHEPC RecName: Full=Ribonuclease H; Short=RNase H
gi|189043719|sp|A1RK75.1|RNH_SHESW RecName: Full=Ribonuclease H; Short=RNase H
gi|120559143|gb|ABM25070.1| ribonuclease H [Shewanella sp. W3-18-1]
gi|145564569|gb|ABP75504.1| ribonuclease H [Shewanella putrefaciens CN-32]
gi|319426197|gb|ADV54271.1| ribonuclease H [Shewanella putrefaciens 200]
Length = 156
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ +FTDG+C N G GYG+ Y G ++ +T TNN E+ I AL+
Sbjct: 7 IHIFTDGSCLGNPGPG---GYGIVMNYKGHTKEMSDGFALT---TNNRMELLAPIIALES 60
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + SDSQ+M + + W+ W+ GW ++ PV+N +L + L ++ QM +
Sbjct: 61 LKEPC--RVVLTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNV-DLWKRLDKVSQMHT 117
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V GH N + D +AR AA
Sbjct: 118 IDWQWVKGHAGHAENERCDILARSAA 143
>gi|168819165|ref|ZP_02831165.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248684|ref|YP_006884524.1| RNase HI, degrades RNA of DNA-RNA hybrids [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|205344274|gb|EDZ31038.1| ribonuclease HI [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084512|emb|CBY94304.1| RNase HI, degrades RNA of DNA-RNA hybrids [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 155
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYMLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 VWVKGHAGHPENERCDELARAAA 141
>gi|427418731|ref|ZP_18908914.1| ribonuclease HI [Leptolyngbya sp. PCC 7375]
gi|425761444|gb|EKV02297.1| ribonuclease HI [Leptolyngbya sp. PCC 7375]
Length = 288
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 12/146 (8%)
Query: 9 VFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+TDGAC N G G+G +YF + + G + TNN E+Q AI AL+ +
Sbjct: 10 VYTDGACSGNPGPG---GWGTVIYFVDGQVHEMGGHAS-ETTNNRMEMQAAIAALQFLQH 65
Query: 67 ANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQIGQME 122
+ D + + +DS+++I+ + +WM W+ GW+ + GK V N++ L +L ++ +
Sbjct: 66 NDYDSPIELNTDSKYLIQGITQWMSGWKRKGWKTSAGKAVLNQDLWMTLDKLKQELATSQ 125
Query: 123 --SVKWEFVPGHGNSHGNMKADEMAR 146
+ W +V GH + GN + DE+AR
Sbjct: 126 GIDIDWRYVKGHAGNVGNERCDEIAR 151
>gi|367475918|ref|ZP_09475345.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS 285]
gi|365271781|emb|CCD87813.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS 285]
Length = 154
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 7 VSIFTDGACSGNPGPG---GWGAILRFGDKEKELKGGEP--HTTNNRMELMAAISALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + +V + +DSQ++ + + W+ W+ NGW+ AD KPV+N E Q L + + V
Sbjct: 62 KKSC--QVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDEAL-KPHKV 118
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
W +V GH N +AD++ARD
Sbjct: 119 NWHWVKGHAGHPENERADQLARD 141
>gi|378825184|ref|YP_005187916.1| ribonuclease H [Sinorhizobium fredii HH103]
gi|365178236|emb|CCE95091.1| ribonuclease H [Sinorhizobium fredii HH103]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + +GE G+ TNN E+ AI AL
Sbjct: 3 HVDIFTDGACSGNPGPG---GWGAVLRYGEVEKEMFGGEA--ETTNNRMELMAAISALNA 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + +DS++++ + +W+ W+ NGW+ D KPV+N EL + L +
Sbjct: 58 LKQPC--EVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNG-ELWQALDEARDRHQ 114
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
V W +V GH N +ADE+AR
Sbjct: 115 VTWHWVKGHAGHPENERADELAR 137
>gi|344280286|ref|XP_003411915.1| PREDICTED: ribonuclease H1-like [Loxodonta africana]
Length = 82
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+D++ IK+DS+F++K V EWMP W+ NGW+ GK V N+ + E + Q Q ++WE+
Sbjct: 1 MDKLIIKTDSKFVVKGVTEWMPNWKQNGWKTVTGKDVVNRSDF-EKIDQASQGMDIQWEY 59
Query: 129 VPGHGNSHGNMKADEMA 145
VPGH GN +AD +A
Sbjct: 60 VPGHRGIRGNEEADRLA 76
>gi|329296921|ref|ZP_08254257.1| RnhA [Plautia stali symbiont]
Length = 155
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 10/147 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDG+C N G GYG + + ++ L AG TNN E+ AI AL +
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGAILRYRQHEKLFSAGYRL--TTNNRMELMAAIVAL-E 57
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A + D V + +DSQ++ + + W+ W+ GW+ A+ KPV+N + Q L + +
Sbjct: 58 ALTQPCD-VVLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSTHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAAG 150
++WE+V GH N + DE+AR AAG
Sbjct: 116 IQWEWVKGHAGHPENERCDELARSAAG 142
>gi|379711693|ref|YP_005266898.1| putative RNase HI [Nocardia cyriacigeorgica GUH-2]
gi|374849192|emb|CCF66268.1| putative RNase HI [Nocardia cyriacigeorgica GUH-2]
Length = 197
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P + G +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRNP--GGAIGWA-WVNHQGPSDSGGAASG--TNQIAELRALLEAV--LAH 54
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
+ + I+SDS + IKC EW+ W+ NGWR + G PV+N E +Q++ I V+
Sbjct: 55 PGDEPLLIESDSLYAIKCASEWIAGWRRNGWRTSTGAPVKNAELIQQIDRAIASRPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH ++ N +AD +A AA
Sbjct: 115 FRWVRGHVGNYFNEQADTLAGQAA 138
>gi|225175099|ref|ZP_03729095.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
gi|225169275|gb|EEG78073.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
Length = 143
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V+++TDGAC P G GA YG + E ++G + TN E+Q AI AL+
Sbjct: 4 VIIYTDGACSGNPGPGGWGAVLRYGSHEKE-----ISGG-DEKTTNQRMELQAAISALEL 57
Query: 64 AKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
K +V + SDS +++ Q W KWQ NGW + +PV N+ +L E L ++ +
Sbjct: 58 LKEPC--KVKLHSDSAYLVNAFKQRWFDKWQKNGWVNSKKEPVVNR-DLWERLLELDRKH 114
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
++W V GH + N + D++ARDA
Sbjct: 115 DIEWVKVKGHADDELNNRCDQLARDAV 141
>gi|187776989|ref|ZP_02993462.1| hypothetical protein CLOSPO_00534 [Clostridium sporogenes ATCC
15579]
gi|187773917|gb|EDU37719.1| ribonuclease HI [Clostridium sporogenes ATCC 15579]
Length = 149
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLKE 63
Query: 67 -ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
N++ + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SV
Sbjct: 64 PCNVE---VYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWENLDELLKKHSV 119
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
K+ V GH ++ N + D++A +A
Sbjct: 120 KFIKVKGHSDNEYNNRCDKLANEA 143
>gi|156050101|ref|XP_001591012.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980]
gi|154692038|gb|EDN91776.1| hypothetical protein SS1G_07636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 146
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 18 NGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKSANIDR-VCIK 75
NGK GA AGYG++F + + NV+ + G TN AE+ A+ AL+ +D+ + I
Sbjct: 7 NGKAGAVAGYGIFFSDGDERNVSAPLEGTPQTNQRAELTAALRALEIVP---LDKNIEII 63
Query: 76 SDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE----FVPG 131
+DS + I C W W+ NGW+ + G V N++ ++++ +I + K + +V G
Sbjct: 64 TDSNYTINCATVWYKGWEKNGWKTSTGNAVMNEDLVKQIRERIDERTKAKVQTNLTWVKG 123
Query: 132 HGNSHGNMKADEMARDAA 149
H + GN+ AD +A A
Sbjct: 124 HDENPGNVAADRLAVSGA 141
>gi|92114065|ref|YP_573993.1| ribonuclease H [Chromohalobacter salexigens DSM 3043]
gi|123387438|sp|Q1QW64.1|RNH_CHRSD RecName: Full=Ribonuclease H; Short=RNase H
gi|91797155|gb|ABE59294.1| ribonuclease H [Chromohalobacter salexigens DSM 3043]
Length = 164
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + +G++ G+ TNN E+ AI AL+
Sbjct: 13 VTIYTDGACRGNPGPG---GWGAVLRYGQHEKTLKGGEAV--TTNNRMELMAAIQALR-- 65
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ R C + +DS+++ K + EW+ W GW+ A +PV+N E +ELL + Q
Sbjct: 66 ---TLTRACDVALWTDSEYLRKGITEWIHGWVKRGWKTAAKQPVKNAELWRELLAET-QR 121
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDA 148
++W +V GH GN AD +A A
Sbjct: 122 HRIEWHWVKGHSGHEGNELADTLANAA 148
>gi|90420108|ref|ZP_01228016.1| ribonuclease H [Aurantimonas manganoxydans SI85-9A1]
gi|90335442|gb|EAS49192.1| ribonuclease H [Aurantimonas manganoxydans SI85-9A1]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + V + TDGAC N G + G L + T TNN E+ I A
Sbjct: 1 MSAEGRVEIHTDGACSGNPGPGGWGAILRFNGNEKELKGGEEHT---TNNRMELLAVIEA 57
Query: 61 LKQAK-SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
L K S +D I SDSQ+M + +W+ W+ NGW+ AD KPV+N E Q+L + G
Sbjct: 58 LTALKRSCPVD---IYSDSQYMRDGITKWIHGWKRNGWKTADKKPVKNAELWQKLEEEKG 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARD 147
+ + V + +V GH N +AD++ARD
Sbjct: 115 RHD-VTFHWVKGHAGDEMNERADQLARD 141
>gi|34496711|ref|NP_900926.1| ribonuclease H [Chromobacterium violaceum ATCC 12472]
gi|81834716|sp|Q7NYL8.1|RNH_CHRVO RecName: Full=Ribonuclease H; Short=RNase H
gi|34102566|gb|AAQ58931.1| ribonuclease H [Chromobacterium violaceum ATCC 12472]
Length = 147
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M ++ V ++TDGAC N G Y G+ L + T TNN EI I A
Sbjct: 1 MTTEDRVEIYTDGACKGNPGPGGWGALMRYKGKEKELFGGERGT---TNNRMEIMAVIRA 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L A ++R C + +DSQ++ K + EW+ W++ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----AALNRPCKVVVYTDSQYVQKGISEWIHGWKARGWKTAAKEPVKNADLWQQLDAE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W +V GH N +AD++A
Sbjct: 113 RNRHLDVEWRWVKGHAGHEFNERADQLA 140
>gi|241663328|ref|YP_002981688.1| ribonuclease H [Ralstonia pickettii 12D]
gi|309782457|ref|ZP_07677181.1| ribonuclease HI [Ralstonia sp. 5_7_47FAA]
gi|404396308|ref|ZP_10988103.1| ribonuclease H [Ralstonia sp. 5_2_56FAA]
gi|240865355|gb|ACS63016.1| ribonuclease H [Ralstonia pickettii 12D]
gi|308918794|gb|EFP64467.1| ribonuclease HI [Ralstonia sp. 5_7_47FAA]
gi|348614797|gb|EGY64336.1| ribonuclease H [Ralstonia sp. 5_2_56FAA]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V V++DGAC N +G G+G G + G+ TNN E+ I A +
Sbjct: 4 VTVYSDGACKGNPGLG---GWGTVLVSGSHEKELFGGEAL--TTNNRMELMAVIEAFRAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K RV + +DSQ++ K + EW+ W++ GW+ AD KPV+N ++L L ++ V
Sbjct: 59 KRPC--RVQVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKN-DDLWRTLDELVAGHEV 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 116 SWHWVKGHAGHPGNERADALA 136
>gi|72383403|ref|YP_292758.1| ribonuclease HI [Prochlorococcus marinus str. NATL2A]
gi|123620466|sp|Q46HH3.1|RNH_PROMT RecName: Full=Ribonuclease H; Short=RNase H
gi|72003253|gb|AAZ59055.1| possible ribonuclease HI [Prochlorococcus marinus str. NATL2A]
Length = 161
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 19/147 (12%)
Query: 7 VVVFTDGAC---PRNGKVGA----SAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+ TDGAC P G GA G + FG N+P TNN E+Q A+
Sbjct: 9 IAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSP---------ETTNNRMELQAALF 59
Query: 60 ALKQAKSANI-DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
L++ K+ + IK+DS+++I + +WMP W+ GW+ A GKPV N++ + L H
Sbjct: 60 ILEKLKNIKFAPSLTIKTDSKYLIDGMDKWMPNWKKKGWKTASGKPVLNQDLWKALDHP- 118
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
++ +K ++V GH N + D +A
Sbjct: 119 -ELPKIKLQYVKGHSGEKDNDRVDAIA 144
>gi|121594113|ref|YP_986009.1| ribonuclease H [Acidovorax sp. JS42]
gi|187611387|sp|A1W6Q8.1|RNH_ACISJ RecName: Full=Ribonuclease H; Short=RNase H
gi|120606193|gb|ABM41933.1| RNase HI [Acidovorax sp. JS42]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 5 NHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N VV++TDGAC P G GA G E + G G TNN E+ I AL
Sbjct: 2 NQVVIYTDGACKGNPGPGGWGAVLRSGTLEKE-----LFGGELG-TTNNRMELMAVIQAL 55
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQI 118
K +V + DSQ++ + + EW+ W+ GWR A G+PV+N E L EL HQ
Sbjct: 56 GALKRPC--QVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHQA 113
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
G ++W +V GH GN +AD +A
Sbjct: 114 GH--RIEWHWVRGHAGDPGNERADMLA 138
>gi|407696196|ref|YP_006820984.1| RNase H [Alcanivorax dieselolei B5]
gi|407253534|gb|AFT70641.1| RNase H [Alcanivorax dieselolei B5]
Length = 147
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDGAC N G G+G GE+ G+ TNN E+ AI AL+
Sbjct: 4 VEIFTDGACRGNPGPG---GWGALLRHGEHERELFGGEPL--TTNNRMELMAAIVALETL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS RV + +DSQ++ + + EWM W+ GWR A +PV+N +L + L Q V
Sbjct: 59 KSPC--RVVLTTDSQYVRQGITEWMANWKRRGWRTASRQPVKNA-DLWQRLDQAAAPHEV 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH N +AD +A
Sbjct: 116 EWRWVRGHSGHVENERADRLA 136
>gi|424826470|ref|ZP_18251355.1| ribonuclease H [Clostridium sporogenes PA 3679]
gi|365980915|gb|EHN16932.1| ribonuclease H [Clostridium sporogenes PA 3679]
Length = 149
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFKDTTNNIMELSAVVEALSLLKE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDS ++I + Q+W+ W++N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SVEVYSDSAYVINAINQKWLDNWKNNNWKTASKSPVKNK-ELWENLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|209695824|ref|YP_002263754.1| ribonuclease H [Aliivibrio salmonicida LFI1238]
gi|238056784|sp|B6EJV2.1|RNH_ALISL RecName: Full=Ribonuclease H; Short=RNase H
gi|208009777|emb|CAQ80083.1| Ribonuclease H [Aliivibrio salmonicida LFI1238]
Length = 157
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYG+ + TNN E+ A+ AL+ K
Sbjct: 8 QVEIFTDGSCLGNPGPG---GYGIVMRYKGTEKTFSGGFNQTTNNRMEMLAAVVALRNLK 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
I V + +DSQ++ + + +W+ W+ GW+KAD KPV N +L + L + +V
Sbjct: 65 EPCI--VVLTTDSQYVRQGITQWIHGWKKRGWKKADKKPVVNA-DLWKQLDAEAERHTVD 121
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N D++AR AA
Sbjct: 122 WRWVKGHAGHRENEMCDDLARTAA 145
>gi|194099521|ref|YP_002002645.1| ribonuclease H [Neisseria gonorrhoeae NCCP11945]
gi|291043009|ref|ZP_06568744.1| ribonuclease H [Neisseria gonorrhoeae DGI2]
gi|293398346|ref|ZP_06642537.1| ribonuclease HI [Neisseria gonorrhoeae F62]
gi|385336478|ref|YP_005890425.1| ribonuclease H [Neisseria gonorrhoeae TCDC-NG08107]
gi|193934811|gb|ACF30635.1| ribonuclease H [Neisseria gonorrhoeae NCCP11945]
gi|291013049|gb|EFE05020.1| ribonuclease H [Neisseria gonorrhoeae DGI2]
gi|291611270|gb|EFF40354.1| ribonuclease HI [Neisseria gonorrhoeae F62]
gi|317165021|gb|ADV08562.1| ribonuclease H [Neisseria gonorrhoeae TCDC-NG08107]
Length = 174
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
D D V ++TDGAC N G G+GV +G G+ + TNN E+ I
Sbjct: 29 DMDTPVYLYTDGACKGNPGAG---GWGVLMRYGSREKELFGGEA--QTTNNRMELTAVIE 83
Query: 60 ALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
LK K +C +DSQ++ ++ W+ W+ NGW+ A +PV+N + QEL +G
Sbjct: 84 GLKSLKRRCTVIIC--TDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWQELDALVG 141
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q + V W +V GH N +AD++A A
Sbjct: 142 QHQ-VSWTWVKGHAGHAENERADDLANRGA 170
>gi|118590744|ref|ZP_01548145.1| ribonuclease H [Stappia aggregata IAM 12614]
gi|118436720|gb|EAV43360.1| ribonuclease H [Stappia aggregata IAM 12614]
Length = 156
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
N V ++TDGAC N G G+GV FGE+ G+ TNN E+ AI AL
Sbjct: 6 NRVTIYTDGACSGNPGPG---GWGVILRFGEHEKELCGGEA--ETTNNRMELMAAIEALN 60
Query: 63 QAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
K R C + +DS ++ ++EWM W+ WR A KPV+N +L + L
Sbjct: 61 ALK-----RPCAVDLYTDSTYVRSGIKEWMYGWKRKNWRTAANKPVKNA-DLWQALDAAK 114
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMAR 146
+ V W +V GH N +ADE+AR
Sbjct: 115 ERHDVTWHWVKGHAGHPDNERADELAR 141
>gi|384083501|ref|ZP_09994676.1| ribonuclease H [gamma proteobacterium HIMB30]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+GV +GE+ G+ TNN E+ AI L
Sbjct: 6 VTLYTDGACKGNPGPG---GWGVVLEYGEHRKELFGGEAD--TTNNRMELTAAIEGLAAL 60
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
KS V + +DS ++ + +W+ W++NGW+ A KPV N++ Q+L GQ + V
Sbjct: 61 KSQCT--VNLYTDSVYVRDGITKWLANWKANGWKTASKKPVSNQDLWQQLDEVSGQHQ-V 117
Query: 125 KWEFVPGHGNSHGNMKADEMARDAAG 150
W +V GH GN +ADE+A G
Sbjct: 118 YWHWVKGHSGHPGNERADELANLGVG 143
>gi|384100969|ref|ZP_10002023.1| ribonuclease HI [Rhodococcus imtechensis RKJ300]
gi|383841528|gb|EID80808.1| ribonuclease HI [Rhodococcus imtechensis RKJ300]
Length = 175
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++V TDG+C RN G + G+ + P G+ +G TN AE++ + A+
Sbjct: 2 IIVSTDGSCLRN--PGGAIGW-AWVNHEGPSQSGGEPSG--TNQIAELRALLEAITAHPG 56
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-SVK 125
D + I+SDSQ+ IKC EW+ W+ GW+ A G PV+N +Q + I + V+
Sbjct: 57 E--DPLLIESDSQYAIKCASEWLLGWKRKGWKTAGGAPVKNLTLVQSIDRAISERPGPVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ +V GH +H N AD +A +AA
Sbjct: 115 FRWVRGHVGNHYNEMADVLAGEAA 138
>gi|337288999|ref|YP_004628471.1| Ribonuclease H [Thermodesulfobacterium sp. OPB45]
gi|334902737|gb|AEH23543.1| Ribonuclease H [Thermodesulfobacterium geofontis OPF15]
Length = 373
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 TNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQN 107
TNN E++ I+AL K ++ I +DS+++IK + EW+PKW+ G+ ++G PV+N
Sbjct: 268 TNNQMELKAVIYALSHFKEPK--KIKIYTDSEYVIKGITEWLPKWKKRGYITSEGNPVKN 325
Query: 108 KEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ EL E L ++ +KWE V H N + D++A+++A
Sbjct: 326 R-ELWEELEKLVNFHKIKWEKVRAHSGDFYNERVDKIAKESA 366
>gi|222111165|ref|YP_002553429.1| ribonuclease h [Acidovorax ebreus TPSY]
gi|221730609|gb|ACM33429.1| ribonuclease H [Acidovorax ebreus TPSY]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 5 NHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N VV++TDGAC P G GA G E + G G TNN E+ I AL
Sbjct: 2 NQVVIYTDGACKGNPGPGGWGAVLRSGTLEKE-----LFGGELG-TTNNRMELMAVIQAL 55
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE---ELQELLHQI 118
K +V + DSQ++ + + EW+ W+ GWR A G+PV+N E L EL HQ
Sbjct: 56 GALKRPC--QVALYLDSQYVRQGITEWIHGWKKKGWRTAAGQPVKNVELWQRLDELAHQA 113
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMA 145
G ++W +V GH GN +AD +A
Sbjct: 114 GH--RIEWHWVRGHAGDPGNERADMLA 138
>gi|359766011|ref|ZP_09269830.1| ribonuclease H [Gordonia polyisoprenivorans NBRC 16320]
gi|359316647|dbj|GAB22663.1| ribonuclease H [Gordonia polyisoprenivorans NBRC 16320]
Length = 159
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V + TDGAC N G Y G ++ + T TNN E+Q AI L
Sbjct: 12 DDVVEISTDGACLGNPGPGGWGAVLRYKGTEKEISGSAPDT---TNNKMELQAAIEGLAA 68
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DS ++ + +W+ WQ NGW+ AD KPV+N + + L+ + +
Sbjct: 69 LKRPST--VILYTDSSYVRNGIMKWVAGWQRNGWKTADKKPVKNADLWKRLIDE-EKRHQ 125
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH H N AD +A AA
Sbjct: 126 VEWRWVKGHNGDHYNEIADRLATSAA 151
>gi|169831980|ref|YP_001717962.1| ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
gi|169638824|gb|ACA60330.1| ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VV++TDGAC +G G V + G + TN E+ AI +L QA
Sbjct: 8 SEVVIYTDGAC--SGNPGPGGWAAVILDGVARRELTGS-DPKTTNQRMELLAAIRSL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
RV + SDS +++ C ++ W +W+ NGW A +PVQN++ +ELL ++ +
Sbjct: 64 LGEEPRRVTLYSDSAYLVNCFRDRWYERWEQNGWVNAKKQPVQNRDLWEELL-RLARRHR 122
Query: 124 VKWEFVPGHGNSHGNMKADEMARDA 148
V + + GHG++ N +AD +AR A
Sbjct: 123 VTFRKIKGHGSNELNNRADALARGA 147
>gi|163854936|ref|YP_001629234.1| ribonuclease H [Bordetella petrii DSM 12804]
gi|163258664|emb|CAP40963.1| rnhA [Bordetella petrii]
Length = 159
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGAHEKTLHGGEAGTTNNRMELLAVIEGLRTLK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V I +DSQ+++K + EW+ W+ GW AD KPV+N E Q L Q+ + V
Sbjct: 69 RPC--QVVIHTDSQYVMKGMTEWLANWKRRGWLTADKKPVKNAELWQALDEQVAR-HKVS 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>gi|188580140|ref|YP_001923585.1| ribonuclease H [Methylobacterium populi BJ001]
gi|179343638|gb|ACB79050.1| ribonuclease H [Methylobacterium populi BJ001]
Length = 225
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALKQ 63
+V+ DG C N G G+GV +P G TNN E+ AI AL+
Sbjct: 2 RTIVYADGGCDPNPGPG---GWGVVI--QDPAGTVELHGGDRATTNNRMELTAAIRALEH 56
Query: 64 -AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
+ A+I+ C DSQ+++K V EWM W++ GWR A G PV+N + +Q L +
Sbjct: 57 FPEGASIEMRC---DSQYVVKSVTEWMRGWKARGWRTATG-PVKNIDLMQR-LDALAAAR 111
Query: 123 SVKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN +AD +A
Sbjct: 112 DVRWTWVRGHAGEAGNERADRLA 134
>gi|51473897|ref|YP_067654.1| ribonuclease H [Rickettsia typhi str. Wilmington]
gi|383752672|ref|YP_005427772.1| ribonuclease H [Rickettsia typhi str. TH1527]
gi|383843507|ref|YP_005424010.1| ribonuclease H [Rickettsia typhi str. B9991CWPP]
gi|81826285|sp|Q68W20.1|RNH_RICTY RecName: Full=Ribonuclease H; Short=RNase H
gi|51460209|gb|AAU04172.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
gi|380759315|gb|AFE54550.1| ribonuclease H [Rickettsia typhi str. TH1527]
gi|380760154|gb|AFE55388.1| ribonuclease H [Rickettsia typhi str. B9991CWPP]
Length = 152
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGAIHA 60
D+ VV++TDGAC N G G+G N+ + K+ G TNN E+ A+ A
Sbjct: 2 DSKVVIYTDGACSGNPGPG---GWGALLKFNDA---SKKIFGYELVTTNNRMEMTAALEA 55
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K ++I V I +DS+++ + W+ W N W K + +PV+N + Q+L ++ +
Sbjct: 56 LRVLKKSSI--VEIYTDSKYLQHGITVWIHNWMKNNWCKNNNEPVKNVDLWQKLYSELSK 113
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++ W +V GH ++ GN+ AD++A
Sbjct: 114 -HTIMWRWVKGHASNSGNIAADKLA 137
>gi|33152311|ref|NP_873664.1| ribonuclease H [Haemophilus ducreyi 35000HP]
gi|38372406|sp|Q7VM15.1|RNH_HAEDU RecName: Full=Ribonuclease HI; Short=RNase HI
gi|33148534|gb|AAP96053.1| ribonuclease H [Haemophilus ducreyi 35000HP]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G GV N + + TNN E++ I L K
Sbjct: 4 VNIFTDGSCLGNPGPG---GIGVVLRYNQHQKKVSQGYFQTTNNRMELRAVIEGLSMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + SDSQ+M + +W+ KW+ + W+ A+GK V+NK +L LL + Q+ ++W
Sbjct: 61 AC--NVTLYSDSQYMKNGITKWIFKWKKSNWKTANGKAVKNK-DLWLLLDEKIQIHYIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH + N DE+A+ A
Sbjct: 118 KWVKGHSGHYENEICDELAKLGA 140
>gi|453380135|dbj|GAC85174.1| ribonuclease H [Gordonia paraffinivorans NBRC 108238]
Length = 158
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V + TDGAC N G G+G + TNN E+ AI L
Sbjct: 14 DAVVEISTDGACLGNPGPG---GWGAVLRYKDKEKRISGSDPDTTNNKMELTAAIEGL-- 68
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
A RV I +DS ++ + +W+ WQ+NGW+ D KPV+N + + L+ + Q
Sbjct: 69 AALTRPSRVIIYTDSTYVRNGITKWVAGWQANGWKTKDKKPVKNADLWRRLIEE-EQRHQ 127
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH H N ADE+A AA
Sbjct: 128 VEWRWVKGHAGDHYNEIADELATTAA 153
>gi|308067490|ref|YP_003869095.1| ribonuclease H [Paenibacillus polymyxa E681]
gi|305856769|gb|ADM68557.1| Ribonuclease H (RNase H) [Paenibacillus polymyxa E681]
Length = 146
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDGAC N G +Y L+ A K+T TNN EI+ I ALK K
Sbjct: 5 VMVYTDGACSGNPGPGGWGIVLLYGEHRKELSGAEKMT---TNNRMEIKSVIEALKLLKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDS +++ C ++ W+ W NGWR + +PV+NKE +EL +G+ E V+
Sbjct: 62 PC--HVKVHSDSAYVVNCFKQGWIKNWLRNGWRNSKNQPVENKELWEELWELMGKHE-VE 118
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+ V GH ++ N + D +A A
Sbjct: 119 YVKVKGHSDNELNNRCDFLATSAV 142
>gi|434403657|ref|YP_007146542.1| ribonuclease HI [Cylindrospermum stagnale PCC 7417]
gi|428257912|gb|AFZ23862.1| ribonuclease HI [Cylindrospermum stagnale PCC 7417]
Length = 301
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK-QAKSA 67
++TDGAC N G A VYF + + ++ G TNN E+Q AI AL+ S
Sbjct: 10 IYTDGACTGNPGPGGWAVV-VYFNDGS-VHEMGDRASHTTNNKMEMQAAIAALQFLETSG 67
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--VK 125
+ + + +DS+++I CV +W+ W+ GW+K+DG PVQN Q+LL + ++ S VK
Sbjct: 68 QTEPITLYTDSEYLINCVTKWVTGWKKKGWKKSDGNPVQN----QDLLETLDELNSKRVK 123
Query: 126 WEFVPGHGNSHGNMKADEMARDAAG 150
W+ V GH + GN + D +AR A
Sbjct: 124 WQHVRGHSGNIGNERCDVIARSYAS 148
>gi|85058569|ref|YP_454271.1| ribonuclease H [Sodalis glossinidius str. 'morsitans']
gi|123752639|sp|Q2NVF9.1|RNH_SODGM RecName: Full=Ribonuclease H; Short=RNase H
gi|84779089|dbj|BAE73866.1| ribonuclease H [Sodalis glossinidius str. 'morsitans']
Length = 163
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y + ++T TNN E+ AI AL+
Sbjct: 5 VAIFTDGSCLGNPGPGGYGAILRYKQHEKTFSAGYRLT---TNNRMELMAAIVALEALTD 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + +DSQ++ + + +W+ W+ GW+ A KPV+N + Q L I Q +++W
Sbjct: 62 AC--EVVLSTDSQYVRQGITQWIHNWKKRGWKTAYKKPVKNVDLWQRLDAAI-QPHTLRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH N + DE+AR AA
Sbjct: 119 DWVKGHSGHPENERCDELARTAA 141
>gi|62126462|gb|AAX64165.1| RNase HI, degrades RNA of DNA-RNA hybrids [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
Length = 274
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 124 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 180
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 181 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 237
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 238 VWVKGHAGHPENERCDELARAAA 260
>gi|383488124|ref|YP_005405803.1| ribonuclease H [Rickettsia prowazekii str. Chernikova]
gi|383489808|ref|YP_005407485.1| ribonuclease H [Rickettsia prowazekii str. Dachau]
gi|380761003|gb|AFE49525.1| ribonuclease H [Rickettsia prowazekii str. Chernikova]
gi|380763531|gb|AFE52050.1| ribonuclease H [Rickettsia prowazekii str. Dachau]
Length = 152
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGAIHA 60
D+ VV++TDGAC N G G+G N+ + K+ G TNN E+ A+ A
Sbjct: 2 DSKVVIYTDGACSGNPGPG---GWGALLHFND---TSKKIFGYELVTTNNRMEMTAALEA 55
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K +++ V I +DS+++ + W+ W N W K++ PV+N + Q+L ++ +
Sbjct: 56 LRILKKSSV--VEIYTDSKYLQHGITVWIHNWIKNNWCKSNNAPVKNADLWQKLYSELSK 113
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH ++ GN+ AD++A
Sbjct: 114 -HTIMWQWVKGHASNSGNIAADKLA 137
>gi|317052129|ref|YP_004113245.1| ribonuclease H [Desulfurispirillum indicum S5]
gi|316947213|gb|ADU66689.1| Ribonuclease H [Desulfurispirillum indicum S5]
Length = 152
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG---RVTNNNAEIQGAIHALK 62
HV ++TDG+C N G A +++ +N + G TNN E+ I L+
Sbjct: 3 HVTMYTDGSCLGNPGPGGYAAI-LHYQDNRGAEHERIICGSAEHTTNNQMELMAVIEGLR 61
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
KS RV I +DS ++ + + W+ +W+ NGW+ A KPV N+E +EL I Q +
Sbjct: 62 ALKSPC--RVDIYTDSNYVRQGITAWIFQWKRNGWKTAGRKPVANRELWEELDSLIAQHQ 119
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
++W +V GH N + D++AR A
Sbjct: 120 -IQWHWVKGHSGHEMNERCDDIARQQA 145
>gi|123441272|ref|YP_001005259.1| ribonuclease H [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|420259660|ref|ZP_14762361.1| ribonuclease H [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|189043722|sp|A1JKB1.1|RNH_YERE8 RecName: Full=Ribonuclease H; Short=RNase H
gi|122088233|emb|CAL11022.1| ribonuclease HI [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|404512910|gb|EKA26744.1| ribonuclease H [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 154
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDG+C N G GYG + + ++ AG TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHEKTFSAGYFL--TTNNRMELMAAIVALEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
S V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +
Sbjct: 60 TSPC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QTHVI 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+WE+V GH N + DE+AR+ A
Sbjct: 117 QWEWVKGHAGHPENERCDELAREGA 141
>gi|389795686|ref|ZP_10198800.1| ribonuclease H [Rhodanobacter fulvus Jip2]
gi|388430338|gb|EIL87512.1| ribonuclease H [Rhodanobacter fulvus Jip2]
Length = 115
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 47 VTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQ 106
TNN E+ AI AL+ K +V + +DS+++++ +++WMPKW +NGWR AD KPV+
Sbjct: 9 TTNNRMELMAAIGALEALKRPC--QVVLTTDSRYVMQGIEQWMPKWMANGWRTADKKPVK 66
Query: 107 NKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
N++ Q L + + V+W++V GH N + D+ AR+ A
Sbjct: 67 NQDLWQRLSAAVASHQ-VRWKWVRGHNGHVENERVDQAAREQA 108
>gi|428214987|ref|YP_007088131.1| DNA polymerase III, subunit gamma/tau [Oscillatoria acuminata PCC
6304]
gi|428003368|gb|AFY84211.1| DNA polymerase III, gamma/tau subunit [Oscillatoria acuminata PCC
6304]
Length = 1056
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ + TDG+C N G G+ ++ + G + T+N E+ AI L+ +
Sbjct: 2 IRIVTDGSCMGNPGPG---GWAAIIIRDDIVEEIGGYDPQTTSNRMELMAAIEGLRHLST 58
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V I++DSQ+++K + EW+P W+ GW+ D KPV N+E +EL G V W
Sbjct: 59 T--EPVHIQTDSQYLLKGITEWLPGWKRKGWKTGDKKPVANQELWEELEKLTGN--HVTW 114
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E + H N +AD +A+ A
Sbjct: 115 EHIKAHAGHPENERADRLAKAYA 137
>gi|427732430|ref|YP_007078667.1| ribonuclease HI [Nostoc sp. PCC 7524]
gi|427368349|gb|AFY51070.1| ribonuclease HI [Nostoc sp. PCC 7524]
Length = 302
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
++TDGAC N G G VYF + + ++ G TNN E+Q AI ALK +A
Sbjct: 10 IYTDGACTGNPGPGG-WGVVVYFNDGS-IHEMGDAASHTTNNKMEMQAAIAALKYFHAAR 67
Query: 69 -IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
+ + + +DS+++I CV +W+ W+ GW+K+DG PVQN ++L E+L ++ + V W
Sbjct: 68 QTEPITLYTDSEYLINCVTKWVKGWKRKGWKKSDGNPVQN-QDLLEILDELNSKQ-VNWH 125
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
V GH + GN + D +AR A
Sbjct: 126 HVRGHSGNVGNERCDVIARSFA 147
>gi|374622736|ref|ZP_09695257.1| ribonuclease H [Ectothiorhodospira sp. PHS-1]
gi|373941858|gb|EHQ52403.1| ribonuclease H [Ectothiorhodospira sp. PHS-1]
Length = 147
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDGAC N G G+G + FG + G+ + TNN E+ AI AL+
Sbjct: 5 VEIFTDGACRGNPGPG---GWGALLRFGPHEKQLKGGE--SQTTNNRMELMAAIAALELL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V + +DSQ++ + +W+P W+ GWR A G+PV+N ++L + L + V
Sbjct: 60 KRPCV--VDLTTDSQYVKNGINQWLPNWKRRGWRTAAGEPVKN-QDLWQRLDEAASRHQV 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
+W +V GH N AD +A +A
Sbjct: 117 RWHWVRGHNGHPENELADRLANEA 140
>gi|358410583|gb|AEU09981.1| putative ribonuclease HI [Photobacterium damselae subsp. piscicida]
Length = 153
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G GYG R TNN E+ AI L K
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAVLRYKQHEKELSAGFYRTTNNRMELLAAIEGLASLKQ 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ +V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L Q V W
Sbjct: 62 SC--QVDLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNA-DLWKRLDTETQRHQVSW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 HWVKGHAGHPENERCDELARTAA 141
>gi|289449960|ref|YP_003474948.1| ribonuclease HI [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184507|gb|ADC90932.1| ribonuclease HI [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 156
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK- 65
V ++TDGAC G GA V + ++G TNN E+Q I ALK K
Sbjct: 7 VTIYTDGACS--GNPGAGGWAAVLMVADRKKEISG-YEATTTNNRMELQAVIEALKCLKF 63
Query: 66 SANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
S +D + SDS +++ Q W+ WQ NGW+ A + V NK++ QELL ++ ++ +
Sbjct: 64 SCEVD---LYSDSAYVVNAFKQNWLGNWQKNGWKNAAKQDVSNKDQWQELL-RLSKLHRI 119
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W V GH ++ N + DE+A
Sbjct: 120 TWHKVRGHSDNIYNNRCDELA 140
>gi|448825592|ref|YP_007418523.1| putative ribonuclease H protein [Megavirus lba]
gi|444236777|gb|AGD92547.1| putative ribonuclease H protein [Megavirus lba]
Length = 175
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIH 59
+D +N V+VFTDG+C NG+ A G G++F + +++ T G TN E+ ++
Sbjct: 8 IDIEN-VIVFTDGSCVNNGRKHAVGGIGIHFPDRTLNDISRIFTKGCCTNQRTELYAILY 66
Query: 60 ALKQAKSANIDRVCIK---SDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
A+K S + CI +DSQ+ I C+ +W+P W N W+ + V N+E + E ++
Sbjct: 67 AIKYVHSEIGLQNCILNIFTDSQYSINCITKWVPAWIKNNWKTKNNTAVANREFI-EPIY 125
Query: 117 QIGQMESVKWEFVPGHG-----NSHGNMKADEMARDAA 149
+ ++ + V H +S N KAD +A A
Sbjct: 126 RYYNKYNINFTHVDAHTGRDDYDSIANAKADYLATKAT 163
>gi|365883399|ref|ZP_09422547.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS 375]
gi|365288123|emb|CCD95078.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS 375]
Length = 154
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 7 VSIFTDGACSGNPGPG---GWGAILRFGDKEKELKGGEP--HTTNNRMELMAAISALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + +V + +DSQ++ + + W+ W+ NGW+ AD KPV+N E Q L + + +
Sbjct: 62 KKSC--QVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDTAL-KPHKI 118
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
W +V GH N +AD++ARD
Sbjct: 119 TWHWVKGHAGHPENERADQLARD 141
>gi|339477841|ref|YP_004706661.1| putative RNase H [Candidatus Moranella endobia PCIT]
gi|338172392|gb|AEI74793.1| putative RNase H [Candidatus Moranella endobia PCIT]
Length = 163
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ +FTDG+C N G Y + R TNN E+ AI AL++
Sbjct: 5 IKIFTDGSCLGNPGPGGYGYILRYKQYEKTFSAGYH---RTTNNRMELMAAIAALEELTE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A +V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + Q L I Q+ +++W
Sbjct: 62 AC--QVVLSTDSQYLRQGITQWIHTWKQLGWKTAEKKPVKNIDLWQRLDMAI-QLHTLRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAGW 151
++V GH N + DE+A AAG+
Sbjct: 119 DWVKGHAGHPENERCDELAHIAAGY 143
>gi|148378405|ref|YP_001252946.1| ribonuclease H [Clostridium botulinum A str. ATCC 3502]
gi|153930802|ref|YP_001382783.1| ribonuclease H [Clostridium botulinum A str. ATCC 19397]
gi|153936460|ref|YP_001386334.1| ribonuclease H [Clostridium botulinum A str. Hall]
gi|153938993|ref|YP_001389773.1| ribonuclease H [Clostridium botulinum F str. Langeland]
gi|384460845|ref|YP_005673440.1| ribonuclease HI [Clostridium botulinum F str. 230613]
gi|187611360|sp|A7FR34.1|RNH_CLOB1 RecName: Full=Ribonuclease H; Short=RNase H
gi|187611361|sp|A5HYU6.1|RNH_CLOBH RecName: Full=Ribonuclease H; Short=RNase H
gi|187611362|sp|A7GAG3.1|RNH_CLOBL RecName: Full=Ribonuclease H; Short=RNase H
gi|148287889|emb|CAL81955.1| ribonuclease Hi [Clostridium botulinum A str. ATCC 3502]
gi|152926846|gb|ABS32346.1| ribonuclease HI [Clostridium botulinum A str. ATCC 19397]
gi|152932374|gb|ABS37873.1| ribonuclease HI [Clostridium botulinum A str. Hall]
gi|152934889|gb|ABS40387.1| ribonuclease HI [Clostridium botulinum F str. Langeland]
gi|295317862|gb|ADF98239.1| ribonuclease HI [Clostridium botulinum F str. 230613]
Length = 149
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLKE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|170757863|ref|YP_001780057.1| ribonuclease H [Clostridium botulinum B1 str. Okra]
gi|429244305|ref|ZP_19207772.1| ribonuclease H [Clostridium botulinum CFSAN001628]
gi|169123075|gb|ACA46911.1| ribonuclease HI [Clostridium botulinum B1 str. Okra]
gi|428758686|gb|EKX81091.1| ribonuclease H [Clostridium botulinum CFSAN001628]
Length = 149
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLKK 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|410485170|ref|YP_006772715.1| ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2050]
gi|406780332|gb|AFS59755.1| putative ribonuclease H [Escherichia coli O104:H4 str. 2009EL-2050]
Length = 197
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +F+DG+C +N G GYG+ Y GE + T TNN E+ GA+ L++
Sbjct: 41 VKIFSDGSCLKNP--GGPGGYGIVLQYRGEEREFSDGFHST---TNNRMEMMGALIGLER 95
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + +WM W+ NGW +D KPV+N +L + L + +
Sbjct: 96 LKYPC--NVILHSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKN-VDLWKRLDEAASRHN 152
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 153 VRWKWVKGHAGHRENEICDRLAKIAA 178
>gi|293411968|ref|ZP_06654693.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469523|gb|EFF12012.1| conserved hypothetical protein [Escherichia coli B354]
Length = 197
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +F+DG+C +N G GYG+ Y GE + T TNN E+ GA+ L++
Sbjct: 41 VKIFSDGSCLKNP--GGPGGYGIVLQYRGEEREFSDGFHST---TNNRMEMMGALIGLER 95
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + +WM W+ NGW +D KPV+N +L + L + +
Sbjct: 96 LKYPC--NVILHSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKN-VDLWKRLDEAASRHN 152
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 153 VRWKWVKGHAGHRENEICDRLAKIAA 178
>gi|238762659|ref|ZP_04623628.1| Ribonuclease H [Yersinia kristensenii ATCC 33638]
gi|238698964|gb|EEP91712.1| Ribonuclease H [Yersinia kristensenii ATCC 33638]
Length = 154
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDG+C N G GYG + + ++ AG TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYKQHEKTFSAGYFL--TTNNRMELMAAIVALEAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
S V + +DSQ++ + + +W+ W+ GW+ D KPV+N + Q L I Q +
Sbjct: 60 TSPC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAI-QTHVI 116
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+WE+V GH N + DE+AR+ A
Sbjct: 117 QWEWVKGHAGHPENERCDELAREGA 141
>gi|422769107|ref|ZP_16822829.1| RNase H [Escherichia coli E1520]
gi|323934289|gb|EGB30711.1| RNase H [Escherichia coli E1520]
Length = 157
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 9 VFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+F+DG+C +N G GYG+ Y GE + T TNN E+ GA+ L++ K
Sbjct: 3 IFSDGSCLKN--PGGPGGYGIVLQYRGEEREFSDGFHST---TNNRMEMMGALIGLERLK 57
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDSQ++ + +WM W+ NGW +D KPV+N +L + L + +V+
Sbjct: 58 YPC--NVILYSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKN-VDLWKRLDEAASRHNVR 114
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W++V GH N D +A+ AA
Sbjct: 115 WKWVKGHAGHRENEICDRLAKIAA 138
>gi|168181269|ref|ZP_02615933.1| ribonuclease HI [Clostridium botulinum Bf]
gi|237793724|ref|YP_002861276.1| ribonuclease H [Clostridium botulinum Ba4 str. 657]
gi|182675272|gb|EDT87233.1| ribonuclease HI [Clostridium botulinum Bf]
gi|229263857|gb|ACQ54890.1| ribonuclease HI [Clostridium botulinum Ba4 str. 657]
Length = 149
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLKE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|378716018|ref|YP_005280907.1| ribonuclease H [Gordonia polyisoprenivorans VH2]
gi|375750721|gb|AFA71541.1| ribonuclease H [Gordonia polyisoprenivorans VH2]
Length = 159
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D+ V + TDGAC N G Y G ++ + T TNN E+Q AI L
Sbjct: 12 DDVVEISTDGACLGNPGPGGWGAVLRYKGTEKEISGSAPDT---TNNKMELQAAIEGLAA 68
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + V + +DS ++ + +W+ WQ NGW+ AD KPV+N + + L+ + +
Sbjct: 69 LKRPST--VILYTDSSYVRNGIMKWVAGWQRNGWKTADKKPVKNADLWKRLIDE-EKRHQ 125
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH H N AD +A AA
Sbjct: 126 VEWRWVKGHNGDHYNEIADRLATSAA 151
>gi|387816641|ref|YP_005676985.1| ribonuclease HI [Clostridium botulinum H04402 065]
gi|322804682|emb|CBZ02234.1| ribonuclease HI [Clostridium botulinum H04402 065]
Length = 149
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL K
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLKE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SIELHSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|269959134|ref|YP_003328923.1| ribonuclease H [Anaplasma centrale str. Israel]
gi|269848965|gb|ACZ49609.1| ribonuclease H [Anaplasma centrale str. Israel]
Length = 171
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
+ V ++TDGAC N G G+G + FG+ ++G + TNN E+ I AL
Sbjct: 24 SRVAIYTDGACSGNPGPG---GWGAVLRFGDGEERRISGG-SDDTTNNRMELTAVIMAL- 78
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A + VC+ +DS ++ + EW+ KW+ NGWR + V+N + E L ++ +
Sbjct: 79 -AALSGPCSVCVNTDSTYVKNGITEWIRKWKLNGWRTSSKSAVKNVDLWME-LERLTLLH 136
Query: 123 SVKWEFVPGHGNSHGNMKADEMARDAA 149
S++W +V H N KAD +AR A
Sbjct: 137 SIEWRWVKAHAGDEYNEKADMLARGEA 163
>gi|441432460|ref|YP_007354502.1| ribonuclease H [Acanthamoeba polyphaga moumouvirus]
gi|371944819|gb|AEX62640.1| putative ribonuclease H protein [Moumouvirus Monve]
gi|440383540|gb|AGC02066.1| ribonuclease H [Acanthamoeba polyphaga moumouvirus]
Length = 203
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQA 64
++VVFTDG+C NGK A G G++F +++ T G TN E+ ++A+K
Sbjct: 8 NIVVFTDGSCMNNGKKNAVGGIGIHFPCGEFKDISRVFTKGCCTNQRTELFAILYAIKY- 66
Query: 65 KSANID--------RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
ID V I +DSQ+ I C+ +W+P W N W + PV NKE + E ++
Sbjct: 67 ----IDIKLGLSNCSVYICTDSQYSINCITKWVPAWIKNNWMTKNNTPVANKEFI-EPIY 121
Query: 117 QIGQMESVKWEFVPGH-----GNSHGNMKADEMARDAA 149
+ ++ +E V H +S N +AD +A A
Sbjct: 122 KYYTKYNITFEHVDAHTGGTDSDSIANARADFLATQAT 159
>gi|295697111|ref|YP_003590349.1| Ribonuclease H [Kyrpidia tusciae DSM 2912]
gi|295412713|gb|ADG07205.1| Ribonuclease H [Kyrpidia tusciae DSM 2912]
Length = 156
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC N G A +Y G++ G+ TN E+ AI+AL+ K
Sbjct: 4 VTIYTDGACSGNPGPGGWAAVLLY-GDHVREMAGGEE--HTTNQRMELLAAIYALRALKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV + SDS +++ C ++ W +W++NGWR + +PVQN+E +ELL ++ + V
Sbjct: 61 PC--RVRLFSDSAYLVNCFRQGWHRRWRANGWRNSRQEPVQNRELWEELL-RLTDVHRVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+E V GH N + D +AR A
Sbjct: 118 FEKVQGHAGDAWNERCDALARAAT 141
>gi|372268031|ref|ZP_09504079.1| ribonuclease H [Alteromonas sp. S89]
Length = 146
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+GV GE+ G+ TNN E+ AI AL+
Sbjct: 4 VTIYTDGACRGNPGPG---GWGVLLMSGESEKELCGGESL--TTNNRMELMAAIEALQAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
RV + +DSQ++ + + W+ W+ NGW+ A+ KPV+N + Q L IG+ + V
Sbjct: 59 NQQC--RVDLHTDSQYVRQGITGWIHNWKKNGWKTANKKPVKNADLWQALDSAIGEHD-V 115
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 116 HWHWVKGHAGDPGNERADALA 136
>gi|15604563|ref|NP_221081.1| ribonuclease H [Rickettsia prowazekii str. Madrid E]
gi|383486710|ref|YP_005404390.1| ribonuclease H [Rickettsia prowazekii str. GvV257]
gi|383488969|ref|YP_005406647.1| ribonuclease H [Rickettsia prowazekii str. Katsinyian]
gi|383499948|ref|YP_005413309.1| ribonuclease H [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500782|ref|YP_005414142.1| ribonuclease H [Rickettsia prowazekii str. RpGvF24]
gi|386082604|ref|YP_005999183.1| Ribonuclease H [Rickettsia prowazekii str. Rp22]
gi|6685894|sp|Q9ZCK3.1|RNH_RICPR RecName: Full=Ribonuclease HI; Short=RNase HI
gi|3861258|emb|CAA15157.1| RIBONUCLEASE H (rnhA) [Rickettsia prowazekii str. Madrid E]
gi|292572370|gb|ADE30285.1| Ribonuclease H [Rickettsia prowazekii str. Rp22]
gi|380757075|gb|AFE52312.1| ribonuclease H [Rickettsia prowazekii str. GvV257]
gi|380758479|gb|AFE53715.1| ribonuclease H [Rickettsia prowazekii str. RpGvF24]
gi|380761848|gb|AFE50369.1| ribonuclease H [Rickettsia prowazekii str. Katsinyian]
gi|380762694|gb|AFE51214.1| ribonuclease H [Rickettsia prowazekii str. BuV67-CWPP]
Length = 152
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGR---VTNNNAEIQGAIHA 60
D+ VV++TDGAC N G G+G N+ + K+ G TNN E+ A+ A
Sbjct: 2 DSKVVIYTDGACSGNPGPG---GWGALLHFND---TSKKIFGYELVTTNNRMEMTAALEA 55
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K +++ V I +DS+++ + W+ W N W K++ PV+N + Q+L ++ +
Sbjct: 56 LRILKKSSV--VEIYTDSKYLQHGITVWIHNWIKNNWCKSNNAPVKNADLWQKLYSELSK 113
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
++ W++V GH ++ GN+ AD++A
Sbjct: 114 -HTIMWKWVKGHASNSGNIAADKLA 137
>gi|456352584|dbj|BAM87029.1| ribonuclease H [Agromonas oligotrophica S58]
Length = 154
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 7 VSIYTDGACSGNPGPG---GWGAILRFGDKEKELKGGEP--HTTNNRMELMAAISALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + +V + +DSQ++ + + W+ W+ NGW+ AD KPV+N E Q L + + V
Sbjct: 62 KKSC--QVELYTDSQYVRQGITSWIHGWKRNGWKTADKKPVKNAELWQRLDAAL-KPHKV 118
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
W +V GH N +AD++ARD
Sbjct: 119 NWHWVKGHAGHAENERADQLARD 141
>gi|167470220|ref|ZP_02334924.1| RNase H [Yersinia pestis FV-1]
Length = 154
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V VF DG+C N G GYG TNN E+ AI AL+ S
Sbjct: 5 VEVFADGSCLGNPGPG---GYGAILRYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L I Q +++W
Sbjct: 62 PC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAI-QSHTIQW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR A
Sbjct: 119 EWVKGHAGHPENERCDELARQGA 141
>gi|361131383|gb|EHL03081.1| putative Ribonuclease H [Glarea lozoyensis 74030]
Length = 314
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQA-KS 66
V+TDG+ NGK A AG GVYFG ++ N++ ++ G + TN AE+ G + AL+ +
Sbjct: 165 VWTDGSARGNGKANAEAGVGVYFGYDDERNLSERLAGDLQTNQRAELTGILRALELVPPT 224
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
N++ I +DS + I C W W W + G PV NK+ + ++ ++ + ++
Sbjct: 225 QNLE---IITDSNYGINCASVWYENWIKRDWHSSTGAPVMNKDLVVKIREKMDERDAKGT 281
Query: 124 -VKWEFVPGHGNSHGNMKADEMA 145
+ +V GH GN+ AD +A
Sbjct: 282 RTIYTWVKGHSEDEGNIGADLLA 304
>gi|254508654|ref|ZP_05120769.1| ribonuclease HI [Vibrio parahaemolyticus 16]
gi|219548411|gb|EED25421.1| ribonuclease HI [Vibrio parahaemolyticus 16]
Length = 154
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYG+ K TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGIVLRYKQTEKTLAKGYTLTTNNRMEMLATIVALQALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N +L + L + ++
Sbjct: 61 EPC--DVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNA-DLWKALDAESERHNID 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARTAA 141
>gi|320155617|ref|YP_004187996.1| ribonuclease HI [Vibrio vulnificus MO6-24/O]
gi|319930929|gb|ADV85793.1| ribonuclease HI [Vibrio vulnificus MO6-24/O]
Length = 155
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV + TNN E+ I AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKQVEKTLAQGYRLTTNNRMEMMATIVALQALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + S+
Sbjct: 61 EPC--NVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETTR-HSID 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARAAA 141
>gi|343505397|ref|ZP_08742969.1| ribonuclease H [Vibrio ichthyoenteri ATCC 700023]
gi|342807695|gb|EGU42875.1| ribonuclease H [Vibrio ichthyoenteri ATCC 700023]
Length = 155
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G GYGV K TNN E+ I ALK K
Sbjct: 4 QVEIFTDGSCLGNPGPG---GYGVVLRYKQVEKTLAKGFALTTNNRMEMLATIVALKALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ W+ AD KPV+N +L + L Q V
Sbjct: 61 EPC--SVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNA-DLWKALDIETQRHDVD 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N DE+AR AA
Sbjct: 118 WRWVKGHAGHRENEMCDELARTAA 141
>gi|170722631|ref|YP_001750319.1| ribonuclease H [Pseudomonas putida W619]
gi|229564315|sp|B1JBN1.1|RNH_PSEPW RecName: Full=Ribonuclease H; Short=RNase H
gi|169760634|gb|ACA73950.1| ribonuclease H [Pseudomonas putida W619]
Length = 148
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ V ++TDGAC N G +Y G L + T TNN E+ AI L
Sbjct: 3 DSVELYTDGACKGNPGPGGWGVLLIYKGVEKELWGGERET---TNNRMELMAAIQGLMAL 59
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K V + +DSQ+++K + EWM W+ GW+ A +PV+N + Q+L Q+ + V
Sbjct: 60 KREC--EVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVNR-HKV 116
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
W++V GH GN +AD++A
Sbjct: 117 TWKWVRGHIGHPGNERADQLA 137
>gi|334126350|ref|ZP_08500328.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
gi|333385579|gb|EGK56808.1| ribonuclease H [Enterobacter hormaechei ATCC 49162]
Length = 202
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKNP--GGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + WM W+ NGW ++ KPV+N +L + L +
Sbjct: 100 LKYPC--NVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKN-VDLWKRLDAAASRHN 156
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 157 VRWKWVKGHAGHRENEMCDRLAKIAA 182
>gi|322514769|ref|ZP_08067793.1| ribonuclease H [Actinobacillus ureae ATCC 25976]
gi|322119265|gb|EFX91393.1| ribonuclease H [Actinobacillus ureae ATCC 25976]
Length = 153
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYFQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK +L L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-DLWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 SWVKGHSGHRENEICDELAKAGA 140
>gi|307247426|ref|ZP_07529473.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306856123|gb|EFM88279.1| Ribonuclease H [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 138
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYLQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK EL L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-ELWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMAR 146
+V GH N DE+A+
Sbjct: 118 TWVKGHSGHRENEICDELAK 137
>gi|18466774|ref|NP_569581.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16506090|emb|CAD09976.1| putative ribonuclease H [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
Length = 202
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKNP--GGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + WM W+ NGW ++ KPV+N +L + L +
Sbjct: 100 LKYPC--NVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKN-VDLWKRLDAAASRHN 156
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 157 VRWKWVKGHAGHRENEMCDRLAKIAA 182
>gi|311977680|ref|YP_003986800.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
gi|308204742|gb|ADO18543.1| probable ribonuclease H protein [Acanthamoeba polyphaga mimivirus]
gi|339061235|gb|AEJ34539.1| ribonuclease HI [Acanthamoeba polyphaga mimivirus]
gi|351737451|gb|AEQ60486.1| ribonuclease HI [Acanthamoeba castellanii mamavirus]
Length = 306
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 12/154 (7%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQGAIHALKQA 64
++ VFTDG+C NG+VGAS G G++F +++ + G TN E+ ++A+ Q
Sbjct: 89 NITVFTDGSCLGNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAI-QY 147
Query: 65 KSANID----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
N D +V IK+DS + + + +W N W K G+P+ N+E +QE +++ Q
Sbjct: 148 IDDNFDLNKCKVMIKTDSTYSVNSITKWAEGHSRNDWCKRTGEPIANREFIQE-IYEYYQ 206
Query: 121 MESVKWEFVPGH-----GNSHGNMKADEMARDAA 149
++ +E+V H S N +AD +A AA
Sbjct: 207 NFNIDFEWVEAHTGQTDSESIANAQADFLANSAA 240
>gi|271501672|ref|YP_003334698.1| Ribonuclease H [Dickeya dadantii Ech586]
gi|270345227|gb|ACZ77992.1| Ribonuclease H [Dickeya dadantii Ech586]
Length = 154
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y L+ ++T TNN E+ AI AL+ S
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKTLSAGYRLT---TNNRMELMAAIVALESLTS 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + W+ W+ GW+ A+ KPV+N + Q L I Q ++ W
Sbjct: 62 PC--EVTLSTDSQYVRQGITSWIHNWKKRGWKTAEKKPVKNIDLWQRLDVAI-QRHTLHW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N + DE+AR AA
Sbjct: 119 MWVKGHAGHPENERCDELARQAA 141
>gi|423202222|ref|ZP_17188801.1| ribonuclease H [Aeromonas veronii AER39]
gi|404615374|gb|EKB12346.1| ribonuclease H [Aeromonas veronii AER39]
Length = 154
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+ V+TDG+C N G VY ++ K+T TNN E+ AI L+
Sbjct: 4 QIDVYTDGSCLGNPGPGGYGAVMVYGKHRKEISAGFKLT---TNNRMELMAAIMGLRTLN 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+V + +DSQ++ + + +W+ W+ GW A+ +PV+N + +EL ++G+ + ++
Sbjct: 61 EPC--KVRLTTDSQYVRQGITQWIIGWKKKGWMTANRQPVKNVDLWKELDAEVGRHQ-IE 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N + DE+ARDAA
Sbjct: 118 WLWVKGHSGHPENERCDELARDAA 141
>gi|226945028|ref|YP_002800101.1| ribonuclease H [Azotobacter vinelandii DJ]
gi|226719955|gb|ACO79126.1| Ribonuclease H [Azotobacter vinelandii DJ]
Length = 152
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V ++TDGAC N G V G L T TNN E+ AI AL
Sbjct: 2 SDKVEIYTDGACKGNPGPGGWGALLVCQGVERELWGGEAET---TNNRMELTAAIRAL-- 56
Query: 64 AKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
A + R C + +DS+++++ + EW+P W+ GW+ A +PV+N + Q+L Q+G+
Sbjct: 57 ---AELKRPCEVHLTTDSEYVMRGILEWLPNWKKRGWKTAARQPVKNADLWQQLDEQVGR 113
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH GN +AD +A
Sbjct: 114 -HRVTWGWVRGHTGHPGNERADLLA 137
>gi|241956674|ref|XP_002421057.1| ribonuclease H, putative [Candida dubliniensis CD36]
gi|223644400|emb|CAX41214.1| ribonuclease H, putative [Candida dubliniensis CD36]
Length = 233
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 26/164 (15%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-----TGRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRHNGSPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGLIPTNQRAELWAMNHALR 116
Query: 63 Q-----AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKE------EL 111
+ + I SDS + IKC+ +W KW NGW G+ + N + EL
Sbjct: 117 NIWNELEEETEDGKAIIYSDSIYAIKCLTDWPQKWTRNGWLNVHGQTISNYDLVTKNYEL 176
Query: 112 QELLHQ------IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
E ++ GQ+ + V GH + GN +AD +A AA
Sbjct: 177 YEWINDEYDDRGWGQLNLIH---VRGHSGNDGNEEADNLANLAA 217
>gi|358459933|ref|ZP_09170125.1| Ribonuclease H [Frankia sp. CN3]
gi|357076852|gb|EHI86319.1| Ribonuclease H [Frankia sp. CN3]
Length = 150
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 7 VVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V ++TDGAC P G GA YG + + G TNN E+ AI AL+
Sbjct: 5 VEIYTDGACKGNPGPGGWGAVLRYGRH-----EKTICGGEPNDTTNNRMELLAAIRALEA 59
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
++ R I +DSQ++ + W+ +W+SNGW+ + K V+N + Q L +GQ +
Sbjct: 60 LTRPSVVR--INTDSQYLRNGITGWLQRWKSNGWQTKEKKAVKNVDLWQRLDSLVGQHQ- 116
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
++W +V GH + GN+ AD++A
Sbjct: 117 IEWVWVKGHAGNPGNVLADQLA 138
>gi|146343359|ref|YP_001208407.1| ribonuclease H [Bradyrhizobium sp. ORS 278]
gi|365893022|ref|ZP_09431235.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. STM 3809]
gi|189043684|sp|A4Z216.1|RNH_BRASO RecName: Full=Ribonuclease H; Short=RNase H
gi|146196165|emb|CAL80192.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. ORS 278]
gi|365330862|emb|CCE03766.1| Ribonuclease H (RNase H) [Bradyrhizobium sp. STM 3809]
Length = 154
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V +FTDGAC N G G+G + FG+ G+ TNN E+ AI AL+
Sbjct: 7 VSIFTDGACSGNPGPG---GWGAILRFGDKEKELKGGEP--HTTNNRMELMAAISALEAL 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + +V + +DSQ++ + + W+ W+ NGW+ AD KPV+N E Q L + + +
Sbjct: 62 KKSC--QVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAAL-KPHKI 118
Query: 125 KWEFVPGHGNSHGNMKADEMARD 147
W +V GH N +AD++ARD
Sbjct: 119 NWHWVKGHAGHPENERADQLARD 141
>gi|83645319|ref|YP_433754.1| ribonuclease HI [Hahella chejuensis KCTC 2396]
gi|123726401|sp|Q2SJ45.1|RNH_HAHCH RecName: Full=Ribonuclease H; Short=RNase H
gi|83633362|gb|ABC29329.1| Ribonuclease HI [Hahella chejuensis KCTC 2396]
Length = 148
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++TDGAC +N G +Y G+N G++ TNN E+ AI AL+ K
Sbjct: 4 VEIYTDGACKKNPGPGGWGAILIY-GKNEKEIYGGELD--TTNNRMELMAAIEALRALKQ 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + +DSQ++ K + EWM W GWR + G PV+N +L + L + + W
Sbjct: 61 GC--KVELYTDSQYVRKGITEWMQNWIKKGWRTSGGDPVKNV-DLWQALDKERNKHDISW 117
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N +ADE+A
Sbjct: 118 RWVKGHSGHPLNERADELA 136
>gi|423112184|ref|ZP_17099877.1| hypothetical protein HMPREF9687_05428 [Klebsiella oxytoca 10-5243]
gi|376374977|gb|EHS87776.1| hypothetical protein HMPREF9687_05428 [Klebsiella oxytoca 10-5243]
Length = 202
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 45 VKVFSDGSCLKNP--GGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 99
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + WM W+ NGW ++ KPV+N +L + L +
Sbjct: 100 LKYPC--NVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKN-VDLWKRLDAAASRHN 156
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 157 VRWKWVKGHAGHRENEMCDRLAKIAA 182
>gi|313201260|ref|YP_004039918.1| ribonuclease h [Methylovorus sp. MP688]
gi|312440576|gb|ADQ84682.1| ribonuclease H [Methylovorus sp. MP688]
Length = 154
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYF--GENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV++ DGAC N G G+G + G + G++ TNN E+ I AL+
Sbjct: 8 VVIYADGACKGNPGPG---GWGAWLAMGGHEKEMCGGELL--TTNNRMELTAVIRALQAL 62
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K + V I +DS ++ K + EWM W++ WR +D KPV+N E+L L Q Q ++
Sbjct: 63 KRPCL--VKIYTDSVYVQKGITEWMTGWKARNWRTSDKKPVKN-EDLWRELDQTVQPHNI 119
Query: 125 KWEFVPGHGNSHGNMKADEMA 145
+W +V GH + GN +AD +A
Sbjct: 120 EWLWVKGHAGNAGNERADALA 140
>gi|121998364|ref|YP_001003151.1| ribonuclease H [Halorhodospira halophila SL1]
gi|187611375|sp|A1WXD7.1|RNH_HALHL RecName: Full=Ribonuclease H; Short=RNase H
gi|121589769|gb|ABM62349.1| RNase HI [Halorhodospira halophila SL1]
Length = 149
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V FTDGAC N G G+GV +GE+ G+ TNN E+ AI AL+
Sbjct: 8 VEAFTDGACRGNPGPG---GWGVLLRYGEHERELYGGEPE--TTNNRMELTAAIRALEA- 61
Query: 65 KSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+DR C + +DSQ++ + + EW+ W+ GWR A KPV N ++L + L ++
Sbjct: 62 ----LDRPCRVVLTTDSQYVRRGITEWLEGWKRRGWRTASRKPVLN-QDLWQRLDELAAY 116
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
V W +V GH N +AD +A
Sbjct: 117 HQVDWHWVRGHAGHAENERADALA 140
>gi|255263666|ref|ZP_05343008.1| ribonuclease HI [Thalassiobium sp. R2A62]
gi|255106001|gb|EET48675.1| ribonuclease HI [Thalassiobium sp. R2A62]
Length = 152
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-----GRVTNNNAEIQGA 57
PD ++ +TDGAC N G G+G + V K TNN E+ GA
Sbjct: 2 PD--LIAYTDGACSGNPGPG---GWGALMIARDGDTVLKKRELKGGEAHTTNNRMELLGA 56
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I+ L+ ++ + I +DS ++ + EW+ W+ GW+ + KPV+N E+L + L +
Sbjct: 57 INVLETLAKPSV--ITIVTDSAYVKGGITEWIFGWKRRGWKTSTKKPVKN-EDLWKRLDE 113
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ Q +V WE+V GH N +ADE+AR
Sbjct: 114 VTQRHTVTWEWVKGHAGHPENERADELAR 142
>gi|168177749|ref|ZP_02612413.1| ribonuclease HI [Clostridium botulinum NCTC 2916]
gi|226947635|ref|YP_002802726.1| ribonuclease H [Clostridium botulinum A2 str. Kyoto]
gi|421836716|ref|ZP_16271108.1| ribonuclease H [Clostridium botulinum CFSAN001627]
gi|182671095|gb|EDT83069.1| ribonuclease HI [Clostridium botulinum NCTC 2916]
gi|226842777|gb|ACO85443.1| ribonuclease HI [Clostridium botulinum A2 str. Kyoto]
gi|409741324|gb|EKN41204.1| ribonuclease H [Clostridium botulinum CFSAN001627]
Length = 149
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+++TDGAC NG+ YG+ K TNN E+ + AL +
Sbjct: 4 VIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSLLRE 63
Query: 67 ANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + SDS ++I + Q+W+ W+ N W+ A PV+NK EL E L ++ + SVK
Sbjct: 64 PC--SVELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNK-ELWEKLDELLKKHSVK 120
Query: 126 WEFVPGHGNSHGNMKADEMARDA 148
+ V GH ++ N + D++A +A
Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143
>gi|410491500|ref|YP_006906722.1| putative ribonuclease H [Salmonella phage SSU5]
gi|390013925|gb|AFL47017.1| putative ribonuclease H [Salmonella phage SSU5]
Length = 254
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V VF+DG+C +N G GYG+ Y GE L+ T TNN E+ GA+ AL++
Sbjct: 97 VKVFSDGSCLKNP--GGPGGYGIVLQYRGEERELSEGFHST---TNNRMEMMGALIALER 151
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + WM W+ NGW ++ KPV+N +L + L +
Sbjct: 152 LKYPC--NVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKN-VDLWKRLDAAASRHN 208
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 209 VRWKWVKGHAGHRENEMCDRLAKIAA 234
>gi|152978552|ref|YP_001344181.1| ribonuclease H [Actinobacillus succinogenes 130Z]
gi|189043680|sp|A6VMP9.1|RNH_ACTSZ RecName: Full=Ribonuclease H; Short=RNase H
gi|150840275|gb|ABR74246.1| ribonuclease H [Actinobacillus succinogenes 130Z]
Length = 154
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ +FTDG+C N VG G GV K + TNN E++ I AL K
Sbjct: 5 IEIFTDGSCLGNPGVG---GIGVVLRYKQHEKTLSKGYFQTTNNRMELRAVIEALNLLKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ + SDSQ+M + +W+ W+ N WR + GKPV+N ++L L Q ++ W
Sbjct: 62 PC--EIILHSDSQYMKNGITQWIFNWKKNNWRASTGKPVKN-QDLWIALDSAIQPHTIHW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 119 RWVKGHSGHRENEMCDELAKQGA 141
>gi|84496895|ref|ZP_00995749.1| ribonuclease H [Janibacter sp. HTCC2649]
gi|84383663|gb|EAP99544.1| ribonuclease H [Janibacter sp. HTCC2649]
Length = 302
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 25 AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKC 84
AG+G Y E++ G G TNN E+ + L+Q + D + I DS++ I
Sbjct: 18 AGWGWYVDEDH-WACGGWPHG--TNNMGELTAVLDLLEQTADVD-DELVIYCDSKYTINS 73
Query: 85 VQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEM 144
+ +WMP W+ GW+K DGKPV N E +Q L + ++V++E++ GH N +AD +
Sbjct: 74 ITQWMPGWKRKGWKKGDGKPVMNVEIMQALDRAMAGRKNVRFEWIKGHSGHALNEEADRL 133
Query: 145 ARDAA 149
A AA
Sbjct: 134 ANGAA 138
>gi|296133241|ref|YP_003640488.1| Ribonuclease H [Thermincola potens JR]
gi|296031819|gb|ADG82587.1| Ribonuclease H [Thermincola potens JR]
Length = 146
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
V ++TDGAC N G G+G + +GE + ++G TNN E+ AI AL+
Sbjct: 4 VTIYTDGACSGNPGPG---GWGAILMYGEKSK-EISG-YEPSTTNNRMELTAAIKALRAL 58
Query: 65 KSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDS +++ Q+ W+ KWQ GW + +PV+N++ QELL ++ +
Sbjct: 59 KEPC--EVDLYSDSAYLVNAFQQDWLGKWQQKGWVNSKKEPVENQDLWQELL-KLTKTHK 115
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
VKW V GH ++ N + DE+AR
Sbjct: 116 VKWIKVKGHADNEFNNRCDELAR 138
>gi|407692088|ref|YP_006816877.1| ribonuclease H [Actinobacillus suis H91-0380]
gi|407388145|gb|AFU18638.1| ribonuclease H [Actinobacillus suis H91-0380]
Length = 153
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G G G+ N K + TNN E++ I AL K
Sbjct: 4 VEIFTDGSCLGNPGKG---GIGIVLRYNGHEKQVSKGYFQTTNNRMELRAVIEALAMLKE 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+V + SDSQ+M + +W+ W+ N W+ A+GKPV+NK +L L Q Q ++W
Sbjct: 61 PC--QVQLNSDSQYMKDGITKWIFNWKKNNWKTANGKPVKNK-DLWIALDQEIQRHKIEW 117
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+V GH N DE+A+ A
Sbjct: 118 AWVKGHSGHRENEICDELAKAGA 140
>gi|384172790|ref|YP_005554167.1| ribonuclease HI [Arcobacter sp. L]
gi|345472400|dbj|BAK73850.1| ribonuclease HI [Arcobacter sp. L]
Length = 273
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
+ + H+ ++ DGAC N A +G +Y + NP+ + G TNN AE+ AL
Sbjct: 102 NEEEHIRIYCDGACSGNPG-NAGSGLAIYSNKKNPVLLYGAYEEEGTNNIAELNALFQAL 160
Query: 62 ---KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
Q S NI + I SDS++ I C+ W W+ NGW K G+ ++N E +QE H
Sbjct: 161 TIASQTHSENI--ISIYSDSKYSIDCITTWAYGWKKNGWSKKGGE-IKNLELIQEAHHLY 217
Query: 119 GQMES-VKWEFVPGHGNSHGNMKADEMA 145
++++ ++ V GH GN AD MA
Sbjct: 218 EKLKNKIEIIHVRGHKGIEGNELADRMA 245
>gi|171463546|ref|YP_001797659.1| ribonuclease H [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193084|gb|ACB44045.1| ribonuclease H [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 154
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H+V++TDGAC N G G ++ K+T TNN EI I ALK K
Sbjct: 12 HIVIYTDGACKGNPGPGGWGAVLRSGGHEKHIHGGEKLT---TNNRMEICAVIFALKALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
++ V + +DSQ++ K V EW+ W+ GW+ A PV+N + QEL I + +
Sbjct: 69 QSST--VELWTDSQYVQKGVTEWLEGWKKRGWKTASKDPVKNADLWQELDTLIPDHD-IS 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN AD++A
Sbjct: 126 WHWVRGHDGHPGNELADQLA 145
>gi|241781706|ref|XP_002400516.1| ribonuclease H1, putative [Ixodes scapularis]
gi|215508575|gb|EEC18029.1| ribonuclease H1, putative [Ixodes scapularis]
Length = 120
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 9 VFTDGACPRNGKVGAS--AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+TDGAC NG + AG GVY+G N+P+NV+ + GR TNN AEIQ A AL Q +
Sbjct: 20 VYTDGACSNNGGYNRTPQAGIGVYWGPNHPMNVSEPLPGRQTNNRAEIQAATRALYQVRE 79
Query: 67 ANIDRVCIKSDSQFMIKCVQEWM 89
V + +DS F++K +WM
Sbjct: 80 QGGRNVTVHTDSDFLVKSTTQWM 102
>gi|85860563|ref|YP_462765.1| ribonuclease H [Syntrophus aciditrophicus SB]
gi|123517534|sp|Q2LWY9.1|RNH_SYNAS RecName: Full=Ribonuclease H; Short=RNase H
gi|85723654|gb|ABC78597.1| ribonuclease H [Syntrophus aciditrophicus SB]
Length = 173
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGV--YFGENNP-LNVAGKVTGRVTNNNAEIQGAI 58
DP V+++TDGAC N G GYGV +GE+ L+ ++T TNN EI AI
Sbjct: 19 DPQKQVIIYTDGACLGNPGPG---GYGVVLLYGEHRKELSGGYRLT---TNNRMEILAAI 72
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L+ KSA V + SDSQ+++ + + W +W++NGW++ + N +L E L +
Sbjct: 73 KGLEALKSAC--SVTLYSDSQYLVNAINKGWAQRWKANGWKRNAREKALN-PDLWERLLE 129
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+ + + +V GH N+ N + D ++++AAG
Sbjct: 130 LCSRHDITFVWVRGHANNKENERCDVLSKEAAG 162
>gi|417346435|ref|ZP_12126289.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417502327|ref|ZP_12173898.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417516079|ref|ZP_12179044.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
gi|353579802|gb|EHC41255.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353652520|gb|EHC94321.1| Ribonuclease H1 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353655051|gb|EHC96170.1| Ribonuclease HI [Salmonella enterica subsp. enterica serovar Uganda
str. R8-3404]
Length = 143
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + +T TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLT---TNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ A+ KPV+N + + L +GQ + +KW
Sbjct: 62 HC--EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH N + DE+AR A
Sbjct: 119 VWVKGHAGHPENERCDELARAA 140
>gi|341886817|gb|EGT42752.1| hypothetical protein CAEBREN_24873 [Caenorhabditis brenneri]
Length = 205
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSAN 68
V+TDG+C G+ A+AG+GV++G+ +P N +G+V G NN AE+ A +A++QA +
Sbjct: 40 VYTDGSCHNQGQPNATAGFGVFWGDLHPYNHSGRVDGLQDNNRAELTAAHYAIRQAIAYK 99
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEF 128
+ I +DS+F+ ++ P+ + +R A +N +L +H + + V E
Sbjct: 100 FSAITIVTDSEFVRMVIER--PE---DFYRIA----YKNYHDLIFSIHAMSKQIEVSVEQ 150
Query: 129 VPGHGNSHGNMKADEMARDAA 149
V H +HGN +AD +A +A
Sbjct: 151 VKSHAGNHGNEEADWLANISA 171
>gi|338740982|ref|YP_004677944.1| ribonuclease HI (RNase HI) [Hyphomicrobium sp. MC1]
gi|337761545|emb|CCB67380.1| Ribonuclease HI (RNase HI) [Hyphomicrobium sp. MC1]
Length = 162
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +++DGAC N G + +N K+T TNN E++GAI AL+ K
Sbjct: 9 VQIYSDGACSGNPGPGGWGAILISGAHRKEINGGEKLT---TNNRMELKGAISALEALKR 65
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DS ++ + + W+ W+ NGW+ AD KPV+N E QE L + V W
Sbjct: 66 KS--DVDLWTDSNYVRQGITAWIHGWKKNGWKTADKKPVKNAELWQE-LDALRAKHHVTW 122
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
++ GH N +AD++AR A
Sbjct: 123 HWLKGHAGHPENERADQLARLA 144
>gi|309797894|ref|ZP_07692275.1| ribonuclease HI [Escherichia coli MS 145-7]
gi|308118502|gb|EFO55764.1| ribonuclease HI [Escherichia coli MS 145-7]
Length = 225
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +F+DG+C +N G GYG+ Y GE + T TNN E+ GA+ L++
Sbjct: 70 VKIFSDGSCLKNP--GGPGGYGIVLQYGGEEREFSDGFHST---TNNRMEMMGALIGLER 124
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + SDSQ++ + +WM W+ NGW +D KPV+N +L + L + +
Sbjct: 125 LKYPC--NVILYSDSQYLKNGMTQWMKWWKRNGWMTSDKKPVKN-VDLWKRLDEAASRHN 181
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W++V GH N D +A+ AA
Sbjct: 182 VRWKWVKGHAGHRENEICDRLAKIAA 207
>gi|253996735|ref|YP_003048799.1| Ribonuclease H [Methylotenera mobilis JLW8]
gi|253983414|gb|ACT48272.1| Ribonuclease H [Methylotenera mobilis JLW8]
Length = 156
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V ++ DGAC N G + Y G L VT TNN E+ I AL+ K
Sbjct: 10 VEIYADGACKGNPGPGGWGAWISYEGHEKELFGGELVT---TNNRMELTAVIRALEALK- 65
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
R C + +DS ++ K + EW+ W++ WR AD KPV+N ++L +L + Q +
Sbjct: 66 ----RTCHAKVFTDSVYVQKGISEWIIGWKARNWRTADKKPVKN-DDLWRVLDVLAQQHT 120
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH + GN +AD +A
Sbjct: 121 VEWIWVKGHAGNVGNERADLLA 142
>gi|254283125|ref|ZP_04958093.1| ribonuclease HI [gamma proteobacterium NOR51-B]
gi|219679328|gb|EED35677.1| ribonuclease HI [gamma proteobacterium NOR51-B]
Length = 146
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V FTDGAC N G G+GV + + TNN E+ AI AL+ K
Sbjct: 5 VEAFTDGACRGNPGPG---GWGVLLRRGDRERELWGGEAQTTNNRMELTAAIEALRSLKD 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+ V + +DS ++ + W+ W+ NGWR A KPV+N++ Q L Q + E V+W
Sbjct: 62 GST--VDLTTDSVYVRDGITRWVAGWKRNGWRTAARKPVKNQDLWQSLDEQCARHE-VRW 118
Query: 127 EFVPGHGNSHGNMKADEMA 145
+V GH N +AD +A
Sbjct: 119 HWVKGHSGHAENDRADALA 137
>gi|56552497|ref|YP_163336.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|260753840|ref|YP_003226733.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|384412438|ref|YP_005621803.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|6685891|sp|O69014.1|RNH_ZYMMO RecName: Full=Ribonuclease H; Short=RNase H
gi|3089615|gb|AAC70364.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|56544071|gb|AAV90225.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
gi|258553203|gb|ACV76149.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|335932812|gb|AEH63352.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 156
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
D V++ TDGAC N G Y G ++ + T TNN E+Q I AL
Sbjct: 8 DKIVMIATDGACKGNPGFGGWGALLRYQGHEKAISGSENPT---TNNRMELQAVIEALSC 64
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K ++ + +DS++++ + W+ WQ NGW A KPV+N + ++LL + +
Sbjct: 65 LKKPC--QIELSTDSKYVMDGLTRWIHGWQKNGWLTAAKKPVKNADLWKQLL-ALTRQHD 121
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+ W++V GH N +AD++A DAA
Sbjct: 122 IAWKWVKGHAGHPDNERADQLASDAA 147
>gi|313122920|ref|YP_004033179.1| rnase hi [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279483|gb|ADQ60202.1| RNase HI [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 255
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 9 VFTDGACPRNG--KVG-------ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+FTDG C NG K G A+ Y + +G L+ +G G TNN E+ +
Sbjct: 97 IFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYG-GQKLSASGGRFG-ATNNEMEMTAFLE 154
Query: 60 ALKQAKSANIDR--VCIKSDSQFMIKCVQE------WMPKWQSNGWRKADGKPVQNKEEL 111
+LK+ + ++ + DSQ++IK V + W+ WQ GW+KADG PV N+E
Sbjct: 155 SLKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELW 214
Query: 112 QELLHQIGQMESVKWEFVPGHGNSHGN 138
QE+ ++ + ++E+V GH NS GN
Sbjct: 215 QEIAKEMAKFAQPEFEWVKGHANSAGN 241
>gi|317047020|ref|YP_004114668.1| ribonuclease H [Pantoea sp. At-9b]
gi|316948637|gb|ADU68112.1| Ribonuclease H [Pantoea sp. At-9b]
Length = 155
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y + ++T TNN E+ AI AL+
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRQHEKTFSAGYRLT---TNNRMELMAAIVALEALT 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V I +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L + + V
Sbjct: 61 QPC--EVVISTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDLALSSHQIV- 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARSAA 141
>gi|357406363|ref|YP_004918287.1| ribonuclease HI (RNase HI) [Methylomicrobium alcaliphilum 20Z]
gi|351719028|emb|CCE24702.1| Ribonuclease HI (RNase HI) [Methylomicrobium alcaliphilum 20Z]
Length = 147
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VV++TDGAC N G G+GV + TNN E+ AI A +
Sbjct: 5 VVIYTDGACRGNPGPG---GWGVVLRYKGSIKELFGGEAHTTNNRMELMAAIQAFEA--- 58
Query: 67 ANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
+ R C I +DS+++++ + EWMP W+ GW A KPV+N + + L + +
Sbjct: 59 --LTRPCSVKIYTDSKYVLQGITEWMPNWKIRGWLTAAKKPVKNDDLWRRLDASMAR-HR 115
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
V+W +V GH GN AD +A
Sbjct: 116 VEWIWVKGHSGDQGNETADRLA 137
>gi|300811482|ref|ZP_07091976.1| ribonuclease HI [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497555|gb|EFK32583.1| ribonuclease HI [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 255
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 9 VFTDGACPRNG--KVG-------ASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIH 59
+FTDG C NG K G A+ Y + +G L+ +G G TNN E+ +
Sbjct: 97 IFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYG-GQKLSASGGRFG-ATNNEMEMTAFLE 154
Query: 60 ALKQAKSANIDR--VCIKSDSQFMIKCVQE------WMPKWQSNGWRKADGKPVQNKEEL 111
+LK+ + ++ + DSQ++IK V + W+ WQ GW+KADG PV N+E
Sbjct: 155 SLKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELW 214
Query: 112 QELLHQIGQMESVKWEFVPGHGNSHGN 138
QE+ ++ + ++E+V GH NS GN
Sbjct: 215 QEIAKEMAKFAKPEFEWVKGHANSAGN 241
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,685,810,645
Number of Sequences: 23463169
Number of extensions: 105137418
Number of successful extensions: 203849
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 1924
Number of HSP's that attempted gapping in prelim test: 196944
Number of HSP's gapped (non-prelim): 4645
length of query: 151
length of database: 8,064,228,071
effective HSP length: 114
effective length of query: 37
effective length of database: 9,684,394,101
effective search space: 358322581737
effective search space used: 358322581737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)