BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3458
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ E L ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFME-LDELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 138 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 197
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q +
Sbjct: 198 KTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFV-ALERLTQGMDI 256
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREGA 281
>sp|Q9UST8|RNH1_SCHPO Ribonuclease H OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rnh1 PE=1 SV=1
Length = 264
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG-RVTNNNAEIQGAIHALKQAKS 66
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTSG 184
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES--- 123
+ I+SDS + IK + W+PKW+ N ++ ++ +PV+N +L+++ + S
Sbjct: 185 D----LTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKN----LDLINRASDLMSDRN 236
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V E+V GH +GN +AD +AR A
Sbjct: 237 VSLEYVKGHSTDYGNQQADMLARRGA 262
>sp|B8HPS9|RNH_CYAP4 Ribonuclease H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rnhA PE=3 SV=1
Length = 157
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 8/143 (5%)
Query: 9 VFTDGACPRNGKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
++TDGAC N G G+GV YFG+ + ++ G TNN E+Q AI AL+ ++
Sbjct: 8 IYTDGACSGNPGPG---GWGVVVYFGDGS-VHEMGGAAAATTNNRMEMQAAIAALEFCQA 63
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
A V + +DS+++ K + EW+P W+ GW+ A GKPV N ++L ++L Q+ +SV W
Sbjct: 64 AGHPPVILYTDSEYVKKGITEWLPGWKRKGWKTAQGKPVLN-QDLWQVLDQL-NTKSVNW 121
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
++V GH + GN + D +AR A
Sbjct: 122 QYVRGHSGNAGNERCDAIARAFA 144
>sp|C6DC65|RNH_PECCP Ribonuclease H OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=rnhA PE=3 SV=1
Length = 154
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y PL+ ++T TNN E+ AI AL + +
Sbjct: 5 VEIFTDGSCLGNPGPGGYGALLRYKQHEKPLSAGYRLT---TNNRMELMAAIAAL-ETLT 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
D V + +DSQ++ + + W+ W+ GW+ AD KPV+N + Q L I Q SV+W
Sbjct: 61 TECD-VVLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAI-QRHSVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAAG 150
E+V GH N + DE+AR AAG
Sbjct: 119 EWVKGHAGHPENERCDELARAAAG 142
>sp|B0TZ91|RNH_FRAP2 Ribonuclease H OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=rnhA PE=3 SV=1
Length = 152
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N+V+ +TDGAC N +G Y G + ++ A K T TNN E+ AI L QA
Sbjct: 8 NNVIAYTDGACKGNPGIGGWGAILSYNGVDKEISGAEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + +W+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTTKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWSWVKGHSGNQGNEKADELANKA 145
>sp|B6JJ39|RNH_OLICO Ribonuclease H OS=Oligotropha carboxidovorans (strain ATCC 49405 /
DSM 1227 / OM5) GN=rnhA PE=3 SV=1
Length = 149
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HVV+FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVVIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGE--NPTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K + I V + +DSQ++ + + W+ W+ NGWR +D KPV+N + Q L + E
Sbjct: 63 LKRSAI--VDLTTDSQYVRQGITSWIFNWKKNGWRTSDKKPVKNVDLWQRLDAALKPHE- 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +ADE+AR+
Sbjct: 120 VRWHWIKGHAGHAENERADELARE 143
>sp|A7ZWF6|RNH_ECOHS Ribonuclease H OS=Escherichia coli O9:H4 (strain HS) GN=rnhA PE=3
SV=1
Length = 155
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHSWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7LHC0|RNH_ECO55 Ribonuclease H OS=Escherichia coli (strain 55989 / EAEC) GN=rnhA
PE=3 SV=1
Length = 155
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHSWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|Q1QH30|RNH_NITHX Ribonuclease H OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnhA PE=3 SV=1
Length = 151
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 6 HVVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
HV +FTDGAC N G G+G + FGE G+ TNN E+ AI AL+
Sbjct: 8 HVTIFTDGACSGNPGPG---GWGAILRFGEIEKELKGGEP--HTTNNRMELLAAISALEA 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K A V + +DSQ++ + + W+ W+ NGWR AD KPV+N + Q L + Q
Sbjct: 63 LKKAA--SVDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNADLWQRLDTAL-QPHQ 119
Query: 124 VKWEFVPGHGNSHGNMKADEMARD 147
V+W ++ GH N +AD++AR+
Sbjct: 120 VRWHWIKGHAGHDENERADQLARE 143
>sp|Q3Z5E9|RNH_SHISS Ribonuclease H OS=Shigella sonnei (strain Ss046) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|P0A7Y7|RNH_SHIFL Ribonuclease HI OS=Shigella flexneri GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|Q32JP9|RNH_SHIDS Ribonuclease H OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|Q325T2|RNH_SHIBS Ribonuclease H OS=Shigella boydii serotype 4 (strain Sb227) GN=rnhA
PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B2U352|RNH_SHIB3 Ribonuclease H OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7LW89|RNH_ESCF3 Ribonuclease H OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B1LHM3|RNH_ECOSM Ribonuclease H OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rnhA
PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B6HZS7|RNH_ECOSE Ribonuclease H OS=Escherichia coli (strain SE11) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7N876|RNH_ECOLU Ribonuclease H OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|P0A7Y4|RNH_ECOLI Ribonuclease HI OS=Escherichia coli (strain K12) GN=rnhA PE=1 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B1IPU4|RNH_ECOLC Ribonuclease H OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|P0A7Y5|RNH_ECOL6 Ribonuclease HI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B1XD78|RNH_ECODH Ribonuclease H OS=Escherichia coli (strain K12 / DH10B) GN=rnhA
PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|C4ZRV1|RNH_ECOBW Ribonuclease H OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7M213|RNH_ECO8A Ribonuclease H OS=Escherichia coli O8 (strain IAI1) GN=rnhA PE=3
SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7MQ23|RNH_ECO81 Ribonuclease H OS=Escherichia coli O81 (strain ED1a) GN=rnhA PE=3
SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7NKW4|RNH_ECO7I Ribonuclease H OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B5Z0I8|RNH_ECO5E Ribonuclease H OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|P0A7Y6|RNH_ECO57 Ribonuclease HI OS=Escherichia coli O157:H7 GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|B7MBJ0|RNH_ECO45 Ribonuclease H OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|A7ZHV1|RNH_ECO24 Ribonuclease H OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEALK 60
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +K
Sbjct: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
WE+V GH N + DE+AR AA
Sbjct: 118 WEWVKGHAGHPENERCDELARAAA 141
>sp|Q7VRX8|RNH_BORPE Ribonuclease H OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV + TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DSQ+++K + EW+ W+ GWR AD KPV+N E Q L Q+G+ + V+
Sbjct: 69 RPC--RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQ-VQ 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>sp|Q0TLC3|RNH_ECOL5 Ribonuclease H OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>sp|B7UJB0|RNH_ECO27 Ribonuclease H OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)
GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V +FTDG+C N G Y G + AG R TNN E+ AI AL+ K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGAILRYRGHEKTFS-AGYT--RTTNNRMELMAAIVALEALKE 61
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ + +KW
Sbjct: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKW 118
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH N + DE+AR AA
Sbjct: 119 EWVKGHAGHPENERCDELARAAA 141
>sp|Q7WCJ8|RNH_BORBR Ribonuclease H OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=rnhA PE=3 SV=1
Length = 155
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
V ++TDGAC N G G+GV + TNN E+ I L+ K
Sbjct: 12 QVEMWTDGACKGNPGPG---GWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALK 68
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
RV I +DSQ+++K + EW+ W+ GWR AD KPV+N E Q L Q+G+ + V+
Sbjct: 69 RPC--RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQ-VQ 125
Query: 126 WEFVPGHGNSHGNMKADEMA 145
W +V GH GN +AD +A
Sbjct: 126 WRWVRGHAGDPGNERADALA 145
>sp|Q2KV56|RNH_BORA1 Ribonuclease H OS=Bordetella avium (strain 197N) GN=rnhA PE=3 SV=1
Length = 153
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVY--FGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
P + V ++TDGAC N G G+GV +G + G + TNN EI +
Sbjct: 7 PADLVEMWTDGACKGNPGPG---GWGVLMRYGSHEKTFFGGDP--QTTNNRMEILAVVEG 61
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L+ K A V I +DSQ+++K + EW+P W+ GW AD KPV+N E Q L Q+ +
Sbjct: 62 LRALKRACT--VVIHTDSQYVMKGMTEWLPNWKRRGWLTADKKPVKNAELWQLLDAQVAR 119
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
E V+W++V GH GN AD +A
Sbjct: 120 HE-VRWQWVRGHNGDPGNEMADMLA 143
>sp|A6V705|RNH_PSEA7 Ribonuclease H OS=Pseudomonas aeruginosa (strain PA7) GN=rnhA PE=3
SV=1
Length = 148
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLV--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>sp|Q9I2S9|RNH_PSEAE Ribonuclease HI OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=rnhA PE=3 SV=1
Length = 148
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLI--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>sp|Q02KV8|RNH_PSEAB Ribonuclease H OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=rnhA PE=3 SV=1
Length = 148
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLI--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>sp|B7VB62|RNH_PSEA8 Ribonuclease H OS=Pseudomonas aeruginosa (strain LESB58) GN=rnhA
PE=3 SV=1
Length = 148
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M VV++TDGAC N G +Y G L T TNN E+ AI A
Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDT---TNNRMELMAAIQA 57
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L K + R+ +DS+++++ + EW+P W+ GW+ A +PV+N + Q L Q+ +
Sbjct: 58 LAALKRSCPIRLI--TDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVAR 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMA 145
+ V+W++V GH GN +AD++A
Sbjct: 116 HQ-VEWQWVRGHTGDPGNERADQLA 139
>sp|A4IYE6|RNH_FRATW Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|Q0BMB7|RNH_FRATO Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|A0Q6W0|RNH_FRATN Ribonuclease H OS=Francisella tularensis subsp. novicida (strain
U112) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|B2SFV9|RNH_FRATM Ribonuclease H OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|Q2A3X6|RNH_FRATH Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|A7NBM9|RNH_FRATF Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=rnhA PE=3 SV=1
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|Q14IN1|RNH_FRAT1 Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
FSC 198) GN=rnhA PE=3 SV=2
Length = 152
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
N V+ +TDGAC N +G Y G + + + K T TNN E+ AI L QA
Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDT---TNNRMELMAAIKTL-QA 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
D + I +DS+++ + EW+ W++NGW+ A K V+NK+ QE L + +V
Sbjct: 64 LKRKCD-ITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQE-LDSLTNKHNV 121
Query: 125 KWEFVPGHGNSHGNMKADEMARDA 148
W +V GH + GN KADE+A A
Sbjct: 122 TWGWVKGHSGNAGNEKADELANKA 145
>sp|Q5QZL3|RNH_IDILO Ribonuclease H OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnhA PE=3 SV=1
Length = 157
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 1 MDPDNHVVVFTDGAC---PRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M V ++TDG+C P G GA YG + E L+ ++T TNN E+
Sbjct: 1 MSNSKTVHLYTDGSCLGNPGPGGYGAVLEYGKHHKE---LSQGYRLT---TNNRMEMLAT 54
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I L++ K + V + +DSQ++ + V++WM +W+ NGWR + K V+NK+ Q+L +
Sbjct: 55 IAGLRELKRSC--HVILTTDSQYVKQGVEQWMHRWKQNGWRTSARKAVKNKDLWQQLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ + V+W+++ GH N + DE+ARDAA
Sbjct: 113 VNR-HKVEWKWIKGHSGHKQNERCDELARDAA 143
>sp|A4XU11|RNH_PSEMY Ribonuclease H OS=Pseudomonas mendocina (strain ymp) GN=rnhA PE=3
SV=1
Length = 150
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
M + VV++TDGAC N G VY G L T TNN E+ AI
Sbjct: 1 MSETDEVVIYTDGACKGNPGPGGWGALLVYKGVEKELWGGDPST---TNNRMELMAAIAG 57
Query: 61 LKQAKSANIDRVC---IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
L + R C + +DSQ+++K +QEW+P W+ GW+ A +PV+N + Q+L +
Sbjct: 58 L-----IALTRPCSVKLVTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEE 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMA 145
+ + + V W++V GH GN +AD++A
Sbjct: 113 VNRHQ-VSWQWVRGHTGHPGNERADQLA 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,440,779
Number of Sequences: 539616
Number of extensions: 2507473
Number of successful extensions: 5393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 4535
Number of HSP's gapped (non-prelim): 409
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)