Query psy3458
Match_columns 151
No_of_seqs 150 out of 1089
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:14:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 100.0 5.1E-44 1.7E-48 240.8 16.4 147 3-150 4-150 (154)
2 3qio_A GAG-POL polyprotein; RN 100.0 7.6E-41 2.6E-45 223.9 14.6 137 4-150 10-146 (150)
3 3h08_A RNH (ribonuclease H); R 100.0 4.2E-41 1.5E-45 224.7 11.8 139 5-150 3-143 (146)
4 2lsn_A Reverse transcriptase; 100.0 2.2E-40 7.6E-45 224.2 13.8 145 4-149 5-161 (165)
5 1jl1_A Ribonuclease HI; RNAse 100.0 4.6E-40 1.6E-44 221.6 13.5 139 5-150 3-142 (155)
6 2e4l_A Ribonuclease HI, RNAse 100.0 5.6E-40 1.9E-44 221.7 13.5 139 5-150 5-144 (158)
7 1ril_A Ribonuclease H; hydrola 100.0 1.6E-39 5.3E-44 221.1 11.1 139 5-150 7-147 (166)
8 3p1g_A Xenotropic murine leuke 100.0 1.2E-33 3.9E-38 191.5 12.5 128 5-150 22-155 (165)
9 2kq2_A Ribonuclease H-related 100.0 2.2E-33 7.4E-38 187.3 -0.6 130 1-150 1-136 (147)
10 3hst_B Protein RV2228C/MT2287; 100.0 3E-30 1E-34 170.8 10.2 127 5-150 2-132 (141)
11 3u3g_D Ribonuclease H, RNAse H 100.0 5.8E-30 2E-34 169.1 10.4 127 5-150 2-136 (140)
12 2ehg_A Ribonuclease HI; RNAse 100.0 5.6E-30 1.9E-34 171.2 9.7 126 6-150 1-133 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.9 1.1E-26 3.8E-31 183.6 12.6 122 4-149 434-555 (555)
14 2zd1_A Reverse transcriptase/r 99.9 1.5E-26 5E-31 183.0 8.4 121 4-148 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.9 1.2E-26 3.9E-31 153.2 3.6 127 3-142 8-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.9 1.2E-25 4E-30 146.0 7.7 106 2-119 1-107 (134)
17 2zd1_B P51 RT; P51/P66, hetero 89.9 0.22 7.6E-06 38.0 3.2 80 2-88 320-406 (428)
18 1rw3_A POL polyprotein; RNA an 89.2 0.16 5.4E-06 39.0 1.9 76 3-87 343-427 (455)
19 2zd1_A Reverse transcriptase/r 50.4 12 0.00042 29.3 3.2 82 2-89 322-409 (557)
20 1uwz_A Cytidine deaminase; CDD 47.8 24 0.00082 22.2 3.8 52 25-78 26-79 (136)
21 1sn9_A BBAT, tetrameric beta-B 46.0 7.2 0.00025 16.6 0.7 12 136-147 5-16 (26)
22 4h8e_A Undecaprenyl pyrophosph 45.5 15 0.00051 26.0 2.7 53 26-79 27-79 (256)
23 2z3g_A Blasticidin-S deaminase 43.9 22 0.00077 22.2 3.2 52 25-78 29-80 (130)
24 1f75_A Undecaprenyl pyrophosph 43.7 46 0.0016 23.4 5.0 52 26-78 23-74 (249)
25 3ugs_B Undecaprenyl pyrophosph 43.3 46 0.0016 23.1 4.8 52 27-79 10-61 (225)
26 2fr5_A Cytidine deaminase; tet 43.2 38 0.0013 21.6 4.2 52 25-78 38-91 (146)
27 2lnd_A De novo designed protei 39.7 53 0.0018 18.8 4.8 43 109-151 38-80 (112)
28 1kn6_A Prohormone convertase 1 32.9 33 0.0011 20.1 2.4 11 137-147 22-32 (90)
29 3sgv_B Undecaprenyl pyrophosph 32.8 54 0.0019 23.1 3.9 52 26-78 20-71 (253)
30 1r5t_A Cytidine deaminase; zin 31.7 86 0.003 19.8 4.5 54 25-79 34-89 (142)
31 2d30_A Cytidine deaminase; pur 27.7 68 0.0023 20.3 3.5 54 25-79 35-89 (141)
32 3zt9_A Serine phosphatase; hyd 24.5 32 0.0011 22.6 1.5 17 1-17 139-155 (193)
33 2d2r_A Undecaprenyl pyrophosph 24.3 1.8E+02 0.0063 20.2 7.5 33 46-78 37-69 (245)
34 4e17_B Catenin alpha-1; four h 24.1 72 0.0024 15.6 2.3 19 48-66 15-33 (40)
35 2db2_A KIAA0890 protein; DSRM 23.3 63 0.0022 19.8 2.5 23 46-68 69-91 (119)
36 3t91_A Stage II sporulation pr 23.1 28 0.00094 23.7 1.0 18 1-18 150-167 (242)
37 3qas_B Undecaprenyl pyrophosph 22.9 95 0.0032 21.8 3.8 51 27-78 21-71 (253)
38 3n4p_A Terminase subunit UL89 22.5 2.1E+02 0.0073 20.3 7.3 74 4-78 60-142 (279)
39 2vg0_A Short-chain Z-isoprenyl 22.2 84 0.0029 21.7 3.3 32 47-78 26-57 (227)
40 3f79_A Probable two-component 21.7 30 0.001 23.7 1.0 18 1-18 186-203 (255)
41 3pu9_A Protein serine/threonin 21.4 31 0.0011 23.6 1.0 18 1-18 153-170 (242)
42 3mpz_A Cytidine deaminase; ssg 21.4 1.1E+02 0.0036 19.8 3.5 53 25-78 48-101 (150)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=100.00 E-value=5.1e-44 Score=240.76 Aligned_cols=147 Identities=41% Similarity=0.754 Sum_probs=136.2
Q ss_pred CCCcEEEEEccCCCCCCCCCCceEEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHH
Q psy3458 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMI 82 (151)
Q Consensus 3 ~~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi 82 (151)
+++.++|||||||.++++.++.+|+|+++.+++....+..+.+.+||++|||+|++.||+.+.+.+.++|+|+|||++|+
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 35789999999999888776678999999887666667777778999999999999999999998889999999999999
Q ss_pred HHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 83 KCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 83 ~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
++|++|+.+|++++|+++.+.+++|.++|+++..++. .++|+|.|||+|+|+++|+.||+||++|++
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~ 150 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAK 150 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 889999999999999999999999999975
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=100.00 E-value=7.6e-41 Score=223.89 Aligned_cols=137 Identities=27% Similarity=0.473 Sum_probs=109.3
Q ss_pred CCcEEEEEccCCCCCCCCCCceEEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 4 ~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
.+.++|||||||.+++++ +|+|+++..+..... .+ +.+|||+|||+|++.||+.+ .++|+|+|||++|++
T Consensus 10 ~~~~~iytDGs~~~n~g~---~g~G~v~~~~~~~~~--~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 10 VGAETFYVDGAANRETKL---GKAGYVTNRGRQKVV--TL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALG 79 (150)
T ss_dssp TTCEEEEEEEEECTTTCC---EEEEEEETTSCEEEE--EE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHH
T ss_pred CCCEEEEEccCCCCCCCC---eEEEEEEEcCCEEEE--eC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHH
Confidence 578999999999998887 588888776544322 22 37999999999999999986 279999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|++|+++|++++|+++.+++++|.++|+++.+++.....|+|.|||+|+|+++|+.||+||++|++
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 146 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876654778999999999999999999999999975
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=100.00 E-value=4.2e-41 Score=224.66 Aligned_cols=139 Identities=33% Similarity=0.565 Sum_probs=119.4
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcCCC-ccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~-~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
..++|||||||.++++. +|+|+++..+. ....++.+ +.+||++|||+|++.||+.+.+ .++|+|+|||++|++
T Consensus 3 ~~i~iytDGs~~~n~g~---~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~ 76 (146)
T 3h08_A 3 KTITIYTDGAASGNPGK---GGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVN 76 (146)
T ss_dssp CEEEEEEEEEESSTTEE---EEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHH
T ss_pred ceEEEEEecCCCCCCCc---eEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHH
Confidence 47999999999988764 68998876543 33444444 3789999999999999999986 479999999999999
Q ss_pred HHHh-hHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 84 CVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~-~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|++ |+++|++++|+++.+.+++|.++|+++.++++ .++|+|+|||+|+|+++|+.||+||++|+.
T Consensus 77 ~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 77 AMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999 789999999999999999999999999974
No 4
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=100.00 E-value=2.2e-40 Score=224.23 Aligned_cols=145 Identities=23% Similarity=0.383 Sum_probs=120.8
Q ss_pred CCcEEEEEccCCCCCCCC--CCceEEEEEEcCCCc-ccccccc---CCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcC
Q psy3458 4 DNHVVVFTDGACPRNGKV--GASAGYGVYFGENNP-LNVAGKV---TGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSD 77 (151)
Q Consensus 4 ~~~~~iytDGs~~~~~~~--~~~ag~gv~~~~~~~-~~~~~~~---~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tD 77 (151)
+..++|||||||.+||++ .+.||||+++..++. ...+... .+..|++.||+.||..||+.+.+.+ ++|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 456789999999999765 345899999864332 2222221 1357888999999999998877654 58999999
Q ss_pred cHHHHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCC------cchHHHHHHHHhhh
Q psy3458 78 SQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNS------HGNMKADEMARDAA 149 (151)
Q Consensus 78 s~~vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~------~~N~~AD~lA~~a~ 149 (151)
|+||+++|+.|+++|++++|+++.++|++|.+||+++.+++....+|+|.|||+|+|. ++|+.||+||++|+
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998864678999999999984 57999999999987
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=100.00 E-value=4.6e-40 Score=221.55 Aligned_cols=139 Identities=35% Similarity=0.607 Sum_probs=123.3
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcC-CCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~-~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
..++|||||||.++++. +|+|+++.. ++....++.+ +.+||++|||+|++.||+.+.+. ++|.|+|||+++++
T Consensus 3 ~~~~iytDGs~~~n~~~---~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~ 76 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGP---GGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQ 76 (155)
T ss_dssp CCEEEEEEEEESSTTEE---EEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHH
T ss_pred ceEEEEEccccCCCCCc---eEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHH
Confidence 35899999999988765 688888764 3333444444 37899999999999999999864 79999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|+.|+++|++++|+++.|.+++|.++|+++.++++ .+.|+|+|||+|+|+++|+.||+||++|+.
T Consensus 77 ~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 142 (155)
T 1jl1_A 77 GITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAM 142 (155)
T ss_dssp HHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998 789999999999999999999999999974
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=100.00 E-value=5.6e-40 Score=221.75 Aligned_cols=139 Identities=29% Similarity=0.577 Sum_probs=123.2
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcC-CCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~-~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
..++|||||||.++++. +|+|+++.. +.....++.++ .+||++|||.|++.||+.+.+. ++|+|+|||++|++
T Consensus 5 ~~i~iytDGs~~~n~g~---~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~ 78 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGP---GGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQ 78 (158)
T ss_dssp CEEEEEEEEEESSSSEE---EEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHH
T ss_pred CeEEEEEcccccCCCCc---EEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHH
Confidence 56899999999988765 689988754 33334444443 7899999999999999999754 79999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|++|+++|++|+|+++.+.+++|.++|+++.++++ .+.|.|.|||+|+|+++|+.||+||++|+.
T Consensus 79 ~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 144 (158)
T 2e4l_A 79 GIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAE 144 (158)
T ss_dssp HHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 789999999999999999999999999974
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=100.00 E-value=1.6e-39 Score=221.09 Aligned_cols=139 Identities=34% Similarity=0.591 Sum_probs=123.3
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcC-CCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGE-NNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~-~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
+.++|||||||.++++. +|+|+++.. ++....++.. +.+||++|||+|++.||+.+.+. .+|+|+|||++|++
T Consensus 7 ~~i~iytDGs~~~n~g~---~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~ 80 (166)
T 1ril_A 7 KRVALFTDGACLGNPGP---GGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKK 80 (166)
T ss_dssp CCCCEEEEEEESSTTEE---EEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHH
T ss_pred ccEEEEECccccCCCCC---EEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHH
Confidence 46899999999988765 699998864 3333444433 37899999999999999999765 59999999999999
Q ss_pred HHHh-hHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 84 CVQE-WMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~-~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|++ |+.+|++++|+++.|.+++|.++|+++.+++. .+.|+|+|||+|+|+++|+.||+||++|+.
T Consensus 81 ~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 147 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQ 147 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999998 789999999999999999999999999975
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=100.00 E-value=1.2e-33 Score=191.49 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=104.6
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEc-CCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~-~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
..++|||||||.++++. +|+|+++. +++....+ ...+.+|||+|||+|++.||+.+. .++|.|||||+++++
T Consensus 22 ~~i~iytDGs~~~npG~---~g~G~vi~~~~~~~~~~-~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQ---RRAGAAVTTETEVIWAR-ALPAGTSAQRAELIALTQALKMAE---GKKLNVYTDSRYAFA 94 (165)
T ss_dssp CSEEEEEEEEEEEETTE---EEEEEEEECSSCEEEEE-EECTTCCHHHHHHHHHHHHHHHTB---TSEEEEEECCHHHHH
T ss_pred CCEEEEEEcccCCCCCc---eEEEEEEEECCEEEEEe-cCCCCCcHHHHHHHHHHHHHHHcc---CceEEEEEchHHHHh
Confidence 35899999999988765 46766543 34433333 344578999999999999999993 479999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCC-----CcchHHHHHHHHhhhc
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGN-----SHGNMKADEMARDAAG 150 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~-----~~~N~~AD~lA~~a~~ 150 (151)
.+ | .++.+++++|.++|+++...+....+|+|+|||+|+| +++|+.||+||++|+.
T Consensus 95 ~i--w---------~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~ 155 (165)
T 3p1g_A 95 TA--H---------VHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM 155 (165)
T ss_dssp HH--H---------SCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred hh--h---------cccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHh
Confidence 88 2 3467889999999999976654477899999999999 9999999999999873
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.97 E-value=2.2e-33 Score=187.34 Aligned_cols=130 Identities=20% Similarity=0.248 Sum_probs=98.0
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCceEEEEEEc-CCCcccccc-cc--CC--cchHHHHHHHHHHHHHHHcHhcCCceEEE
Q psy3458 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAG-KV--TG--RVTNNNAEIQGAIHALKQAKSANIDRVCI 74 (151)
Q Consensus 1 ~~~~~~~~iytDGs~~~~~~~~~~ag~gv~~~-~~~~~~~~~-~~--~~--~~t~~~aEl~Al~~aL~~~~~~~~~~v~i 74 (151)
|.+++.++|||||||.+ + .+|+|+++. ++.....+. .. +. ..||++|||+|++.||+.+.+.+. +|.|
T Consensus 1 ~~~~~~i~iytDGs~~~--g---~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I 74 (147)
T 2kq2_A 1 MDDRTEYDVYTDGSYVN--G---QYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRI 74 (147)
T ss_dssp CCTTSCCEEECCCCCBT--T---BCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCB
T ss_pred CCCCCeEEEEECCCCCC--C---CcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence 67899999999999986 3 368888775 444334444 22 21 369999999999999999988877 9999
Q ss_pred EcCcHHHHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 75 KSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 75 ~tDs~~vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+|||+.+.. |..++|+++.+.+..+.++|+++ . . .|+|.|||+|+|+++|+.||+||++|+.
T Consensus 75 ~tDS~~i~~--------w~~~~w~~~~~~~~~~~~l~~~l----~-~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 136 (147)
T 2kq2_A 75 LHDYAGIAF--------WATGEWKAKNEFTQAYAKLMNQY----R-G-IYSFEKVKAHSGNEFNDYVDMKAKSALG 136 (147)
T ss_dssp SSCCSTHHH--------HTTSSSSCCHHHHHHHHCGGGGG----S-T-TCCBCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred EECcHHHHH--------HHhCCCccCCcchHHHHHHHHHh----c-C-CeeEEEecCcCCCcchHHHHHHHHHHHh
Confidence 999975543 33347877665554444444332 2 2 7999999999999999999999999975
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.97 E-value=3e-30 Score=170.84 Aligned_cols=127 Identities=27% Similarity=0.372 Sum_probs=99.7
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcCC---Ccc-ccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHH
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGEN---NPL-NVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQF 80 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~~---~~~-~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~ 80 (151)
..++||||||+.++++. +|+|+++.+. ... ..+..+ +.+||++||+.|++.||+.+.+.+.++|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~~~g~---~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~ 77 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGP---AGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKL 77 (141)
T ss_dssp CEEEEEEEEEESSSSEE---EEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred cEEEEEEecCCCCCCCC---cEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHH
Confidence 35899999999988765 6888887543 222 333433 388999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 81 MIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 81 vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+++++++ +|+... .....+++++..+++....|+|.|||++ +|+.||+||++|++
T Consensus 78 vv~~i~~--------~~~~~~---~~l~~~~~~i~~l~~~~~~v~~~~V~~~----~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 78 VVEQMSG--------RWKVKH---PDLLKLYVQAQALASQFRRINYEWVPRA----RNTYADRLANDAMD 132 (141)
T ss_dssp HHHHHTT--------SSCCCS---HHHHHHHHHHHHHHTTSSEEEEEECCGG----GCHHHHHHHHHHHH
T ss_pred HHHHHhC--------CcccCC---HHHHHHHHHHHHHHhcCCeEEEEEcCCc----ccHHHHHHHHHHHH
Confidence 9999997 453211 1123455667777774467999999998 99999999999874
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.96 E-value=5.8e-30 Score=169.08 Aligned_cols=127 Identities=26% Similarity=0.449 Sum_probs=101.3
Q ss_pred CcEEEEEccCCCCCCCCCCceEEEEEEcC--CCcc-ccccccCCcchHHHHHHHHHHHHHHHcHhcCCc----eEEEEcC
Q psy3458 5 NHVVVFTDGACPRNGKVGASAGYGVYFGE--NNPL-NVAGKVTGRVTNNNAEIQGAIHALKQAKSANID----RVCIKSD 77 (151)
Q Consensus 5 ~~~~iytDGs~~~~~~~~~~ag~gv~~~~--~~~~-~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~----~v~i~tD 77 (151)
..++||||||+.++++. +|+|+++.+ +... ..+..+ +.+||++||+.|++.||+.+.+.+.+ +|.|+||
T Consensus 2 ~~~~iy~DGs~~~n~g~---~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tD 77 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGP---AGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMD 77 (140)
T ss_dssp CEEEEEEEEEESSTTEE---EEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEES
T ss_pred ceEEEEEecCCCCCCCC---cEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 35899999999988765 799998855 3332 344443 37899999999999999999988877 9999999
Q ss_pred cHHHHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHH-hcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 78 SQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ-IGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 78 s~~vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
|+++++.+++ .|.... .....+++++..+ +.....|+|.|||++ +|+.||+||++|++
T Consensus 78 S~~vi~~i~~--------~~~~~~---~~l~~~~~~i~~l~~~~~~~v~~~~V~~~----~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 78 SELIVRQMQG--------VYKVKE---PTLKEKFAKIAHIKMERVPNLVFVHIPRE----KNARADELVNEAID 136 (140)
T ss_dssp CHHHHHHHTT--------SSCCCC---GGGHHHHHHHHHHHHHHCTTCEEEECCGG----GGHHHHHHHHHHHH
T ss_pred hHHHHHHhCC--------CcccCC---HHHHHHHHHHHHHhhcCCCcEEEEEcCch----hhHHHHHHHHHHHH
Confidence 9999999998 443221 1235678888888 773357999999998 99999999999874
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.96 E-value=5.6e-30 Score=171.20 Aligned_cols=126 Identities=22% Similarity=0.230 Sum_probs=102.1
Q ss_pred cEEEEEccCCC-CCCCCCCceEE-EEEEc-CCCccccc-cccC---CcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 6 HVVVFTDGACP-RNGKVGASAGY-GVYFG-ENNPLNVA-GKVT---GRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 6 ~~~iytDGs~~-~~~~~~~~ag~-gv~~~-~~~~~~~~-~~~~---~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
+++||||||+. .+++. +|+ |+++. +|...... .... +..||++||++|++.||+.+.+.+.++|.|+|||
T Consensus 1 m~~iy~DGs~~~~n~g~---~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS 77 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGG---IATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDS 77 (149)
T ss_dssp CCEEEEEEEEESSSSSS---EEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESC
T ss_pred CEEEEEeeccCCCCCCh---heEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeCh
Confidence 47899999999 67765 574 77654 44443222 2221 3789999999999999999999988999999999
Q ss_pred HHHHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhc
Q psy3458 79 QFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150 (151)
Q Consensus 79 ~~vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~ 150 (151)
+++++++++ .|+.+. ..+.++++++..+++ .++|+|.|||+| +|+.||+||++|+.
T Consensus 78 ~~vi~~i~~--------~w~~~~---~~~~~l~~~i~~l~~-~~~v~~~~V~~~----~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 78 QLVIKQMNG--------EYKVKA---KRIIPLYEKAIELKK-KLNATLIWVPRE----ENKEADRLSRVAYE 133 (149)
T ss_dssp HHHHHHHTT--------SSCCCC---TTHHHHHHHHHHHHH-HHTCEEEECCGG----GCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------ccccCC---HHHHHHHHHHHHHHh-cCCEEEEEcCCc----ccHHHHHHHHHHHH
Confidence 999999998 355543 246899999999998 678999999998 99999999999874
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.94 E-value=1.1e-26 Score=183.57 Aligned_cols=122 Identities=22% Similarity=0.346 Sum_probs=100.1
Q ss_pred CCcEEEEEccCCCCCCCCCCceEEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 4 ~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
.+.+++|||||+.++++. +|+|++...+... +... +.+|||+||++|++.||+. +.++|.|+|||++|++
T Consensus 434 ~~~~~iytDGs~~~n~g~---~g~G~v~~~~~~~--~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~ 503 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKE---GKAGYVTDRGKDK--VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMG 503 (555)
T ss_dssp TTCEEEEEEEEECTTTCC---EEEEEEETTSCEE--EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHH
T ss_pred CCceEEEEcccccCCCCC---ceEEEEEEeCCEe--eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHH
Confidence 457999999999988876 4788887665432 2222 3789999999999999998 4589999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhh
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~ 149 (151)
++++ |.+. .+.++++++.+++.....|.|.|||+|+|+++|+.||+||++|+
T Consensus 504 ~i~~---------~~~~-----~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 504 IVAS---------QPTE-----SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHT---------CCSE-----ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHhc---------cccc-----ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 9997 4432 34678888877755477899999999999999999999999985
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.93 E-value=1.5e-26 Score=182.95 Aligned_cols=121 Identities=24% Similarity=0.318 Sum_probs=95.9
Q ss_pred CCcEEEEEccCCCCCCCCCCceEEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHHHH
Q psy3458 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIK 83 (151)
Q Consensus 4 ~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~vi~ 83 (151)
.+.+++|||||+.++++. +|+|++...++.... .. +.+|||+||++|++.||+.+ .++|.|+|||++|++
T Consensus 437 ~~~~~iytDGs~~~n~g~---~g~g~v~~~~~~~~~--~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKL---GKAGYVTNKGRQKVV--PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCC---EEEEEEETTSCEEEE--EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCc---eEEEEEEECCcEEEe--cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHH
Confidence 456999999999988876 478888766554333 22 37899999999999999999 479999999999999
Q ss_pred HHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhh
Q psy3458 84 CVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDA 148 (151)
Q Consensus 84 ~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a 148 (151)
++++| .. ..+.++++++.+.+....+|+|.|||+|+|+++|+.||+||++|
T Consensus 507 ~i~~~---------~~-----~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 507 IIQAQ---------PD-----KSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHTTC---------CS-----EESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHhcC---------Cc-----cCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99973 22 12467888877555436789999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.93 E-value=1.2e-26 Score=153.22 Aligned_cols=127 Identities=19% Similarity=0.088 Sum_probs=101.9
Q ss_pred CCCcEEEEEccCCCCCCCCCCceEEEEEEc-CCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHHH
Q psy3458 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFG-ENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFM 81 (151)
Q Consensus 3 ~~~~~~iytDGs~~~~~~~~~~ag~gv~~~-~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~v 81 (151)
+.+.++|||||||.+++++ +|+|+++. ++.....++.+. .+|||+|||+|++.||+.+.+.+. +|.|+|||++|
T Consensus 8 ~~~~~~iy~DGa~~gNpG~---~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~v 82 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGI---VEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTA 82 (142)
T ss_dssp CCCSSSEEEEEEECSSSEE---EEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHH
T ss_pred CCCeEEEEEeeccCCCCCC---eEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHH
Confidence 3467899999999998875 69999886 344444444433 789999999999999999999877 99999999999
Q ss_pred HHHHHhhHHHHHHcCc-cccCCCccCCHHHHHHHHHHhc--CCCceEEEEecCCCCCcchHHHH
Q psy3458 82 IKCVQEWMPKWQSNGW-RKADGKPVQNKEELQELLHQIG--QMESVKWEFVPGHGNSHGNMKAD 142 (151)
Q Consensus 82 i~~l~~~~~~w~~~~~-~~~~~~~~~~~~l~~~i~~~~~--~~~~v~~~~v~~h~~~~~N~~AD 142 (151)
++.+++ +| ++..+++++|.+||+.+..+.. ..+.++...|+-|++..||..||
T Consensus 83 i~w~~~--------~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 83 IKWVKD--------KKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHHHH--------TCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred HHHHHc--------CCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 997776 44 5666889999999999887743 25567777788898877877776
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.92 E-value=1.2e-25 Score=145.99 Aligned_cols=106 Identities=20% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCCCcEEEEEccCCCCCCCCCCceEE-EEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcHH
Q psy3458 2 DPDNHVVVFTDGACPRNGKVGASAGY-GVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQF 80 (151)
Q Consensus 2 ~~~~~~~iytDGs~~~~~~~~~~ag~-gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~~ 80 (151)
++.....|||||||.++|++ +|+ ||+..+++....++.+ +.+|||+|||+|++.||+.+.+.+.+ +.|+|||++
T Consensus 1 ~ep~~~~iytDGac~GNPGp---~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqy 75 (134)
T 4htu_A 1 EEIIWESLSVDVGSQGNPGI---VEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQT 75 (134)
T ss_dssp CCCCSSSEEEEEEEETTTEE---EEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHH
T ss_pred CCccceEEEEeeccCCCCCC---eEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHH
Confidence 35667889999999999986 588 5555555555555554 38999999999999999999987654 899999999
Q ss_pred HHHHHHhhHHHHHHcCccccCCCccCCHHHHHHHHHHhc
Q psy3458 81 MIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119 (151)
Q Consensus 81 vi~~l~~~~~~w~~~~~~~~~~~~~~~~~l~~~i~~~~~ 119 (151)
|++.+.+ .+|+++.++|++|.+||+++.++..
T Consensus 76 Vi~wi~~-------~~~kt~~~~~vkN~dLw~~ld~~~~ 107 (134)
T 4htu_A 76 AIKWVKD-------KKAKSTLVRNEETALIWKLVDEAEE 107 (134)
T ss_dssp HHHHHHH-------TCCCCCCCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHc-------CCcccCCCCCccCHHHHHHHHHHHH
Confidence 9975554 3689999999999999999986653
No 17
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=89.90 E-value=0.22 Score=37.99 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=45.2
Q ss_pred CCCCcEEEEEccCCCCCCCCCCceEEEEEEcCCCccccccccCC--cchHHHHHHHH-HHHHHHHcHh--cC--CceEEE
Q psy3458 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQG-AIHALKQAKS--AN--IDRVCI 74 (151)
Q Consensus 2 ~~~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~~~--~~t~~~aEl~A-l~~aL~~~~~--~~--~~~v~i 74 (151)
+++..+.++||+|-.+ . .|+ +....+.....++.+.. ....++-|+.| ++.||+.-+- .| ...+++
T Consensus 320 d~~~~~~l~~das~~g--~----~g~-vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~ 392 (428)
T 2zd1_B 320 DPSKDLIAEIQKQGQG--Q----WTY-QIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLP 392 (428)
T ss_dssp CTTSCCEEEEEEEETT--E----EEE-EEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEES
T ss_pred CCCCCEEEEEecCCCC--c----EEE-EEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECC
Confidence 4677889999998532 0 132 22332222222222221 34445666667 9999986543 23 346788
Q ss_pred EcCcHHHHHHHHhh
Q psy3458 75 KSDSQFMIKCVQEW 88 (151)
Q Consensus 75 ~tDs~~vi~~l~~~ 88 (151)
+||++.+.-..+.|
T Consensus 393 ~td~~~~~~~~~~~ 406 (428)
T 2zd1_B 393 IQKETWETWWTEYW 406 (428)
T ss_dssp SCHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhcc
Confidence 99999766544443
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=89.22 E-value=0.16 Score=39.03 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCceEEEEEEcC----CCcc-ccccccCC---cchHHHHHHHHHHHHHHHcHhc-CCceEE
Q psy3458 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGE----NNPL-NVAGKVTG---RVTNNNAEIQGAIHALKQAKSA-NIDRVC 73 (151)
Q Consensus 3 ~~~~~~iytDGs~~~~~~~~~~ag~gv~~~~----~~~~-~~~~~~~~---~~t~~~aEl~Al~~aL~~~~~~-~~~~v~ 73 (151)
....+.+|||+|... . | ||.... .+.. ..+..+.+ ..+..+.|+.|++.|++..... --.+++
T Consensus 343 ~~~~~~l~~DAS~~~---~----g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~ 414 (455)
T 1rw3_A 343 LTKPFELFVDEKQGY---A----K-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLV 414 (455)
T ss_dssp SCCTTSCEEEEEECS---S----S-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEE
T ss_pred CCCcEEEEEeccCCc---c----e-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 345678899997542 1 2 133322 1222 23444433 3455689999999999887652 226899
Q ss_pred EEcCcHHHHHHHHh
Q psy3458 74 IKSDSQFMIKCVQE 87 (151)
Q Consensus 74 i~tDs~~vi~~l~~ 87 (151)
|+||+. +...+.+
T Consensus 415 v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 415 IKAPHA-VEALVKQ 427 (455)
T ss_dssp EECSSC-TTTTSSS
T ss_pred EEecCh-HHHHhCC
Confidence 999997 5544443
No 19
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=50.45 E-value=12 Score=29.34 Aligned_cols=82 Identities=10% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCCCcEEEEEccCCCCCCCCCCceEEEEEEcCCCcccccccc-CCcchHHHHHHHH-HHHHHHHcHh--cCC-ceEEE-E
Q psy3458 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV-TGRVTNNNAEIQG-AIHALKQAKS--ANI-DRVCI-K 75 (151)
Q Consensus 2 ~~~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~~~~~~~-~~~~t~~~aEl~A-l~~aL~~~~~--~~~-~~v~i-~ 75 (151)
+++..+.++||+|-.+ + -|+.+....+..+...... ......++-|+.| ++.+|+.-.- .|. ..+.+ +
T Consensus 322 d~~~~~~l~~das~~g-----~-~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~ 395 (557)
T 2zd1_A 322 DPSKDLIAEIQKQGQG-----Q-WTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPI 395 (557)
T ss_dssp CTTSCCEEEEEEEETT-----E-EEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESB
T ss_pred CCCCCEEEEEecCCCC-----c-EEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCC
Confidence 4567789999987531 0 1322222222222111111 1134445668888 9999876432 122 24555 7
Q ss_pred cCcHHHHHHHHhhH
Q psy3458 76 SDSQFMIKCVQEWM 89 (151)
Q Consensus 76 tDs~~vi~~l~~~~ 89 (151)
||++.+......|.
T Consensus 396 ~~~~~~~~~~~~~~ 409 (557)
T 2zd1_A 396 QKETWETWWTEYWQ 409 (557)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred cHHHHHHHhhhchh
Confidence 89886655544443
No 20
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=47.82 E-value=24 Score=22.25 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCccccccccC--CcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 25 AGYGVYFGENNPLNVAGKVT--GRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~~~--~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
-|.+++..+|..+...- +. ...-...||..|+..|... -...+..+.+++|.
T Consensus 26 VGAal~~~dG~i~~G~N-vena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 26 VGAALLTKDGKVYRGCN-IENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp EEEEEEETTSCEEEEEC-BCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred EEEEEEeCCCeEEEEeC-cccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 46667777777653211 11 1233568999999999876 33445688888863
No 21
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=45.95 E-value=7.2 Score=16.60 Aligned_cols=12 Identities=33% Similarity=0.174 Sum_probs=8.8
Q ss_pred cchHHHHHHHHh
Q psy3458 136 HGNMKADEMARD 147 (151)
Q Consensus 136 ~~N~~AD~lA~~ 147 (151)
|.-.+||+|||.
T Consensus 5 psydfadelakl 16 (26)
T 1sn9_A 5 PSYDFADELAKL 16 (26)
T ss_dssp TTBCHHHHHHHH
T ss_pred CccchHHHHHHH
Confidence 455789998874
No 22
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=45.46 E-value=15 Score=26.02 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred EEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcH
Q psy3458 26 GYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQ 79 (151)
Q Consensus 26 g~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~ 79 (151)
=+++++..+..+.....++ ...-+.+-..++...++.+.+.|++.+++|.-|.
T Consensus 27 HVAiIMDGN~RwAk~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFSt 79 (256)
T 4h8e_A 27 HIAIIMDGNGRWAKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFST 79 (256)
T ss_dssp EEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEET
T ss_pred EEEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEch
Confidence 3555554433333333333 5567788889999999999999999999998874
No 23
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=43.91 E-value=22 Score=22.19 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 25 AGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
-|.+++..+|..+...- +........||..|+..|... -...+..+.+++|.
T Consensus 29 VGAal~~~dG~i~~G~N-vE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 29 VASAALSSDGRIFTGVN-VYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp EEEEEEETTSCEEEEEC-CCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred EEEEEEecCCeEEEEec-cccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 46667777776653221 111223578999999999875 22345678888874
No 24
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=43.74 E-value=46 Score=23.39 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=34.0
Q ss_pred EEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 26 GYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 26 g~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
=+++++..+..+.....++ ...-..+-..++...++++.+.|++.+++|.=|
T Consensus 23 HVAiImDGN~RwA~~~gl~-~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 74 (249)
T 1f75_A 23 HIAIIMDGNGRWAKQKKMP-RIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 74 (249)
T ss_dssp EEEEEECCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-
T ss_pred EEEEEecCCcHHHHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3556664433322222232 334456668899999999999999999999855
No 25
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=43.28 E-value=46 Score=23.06 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=29.6
Q ss_pred EEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcH
Q psy3458 27 YGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQ 79 (151)
Q Consensus 27 ~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~ 79 (151)
+++++..+..+.....++ ...-+.+=..++...++.+.+.|++.+++|.=|.
T Consensus 10 VAiIMDGNrRwAk~rgl~-r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFSt 61 (225)
T 3ugs_B 10 LAVVMDGNRRWARAKGFL-AKLGYSQGVKTMQKLMEVCMEENISNLSLFAFST 61 (225)
T ss_dssp EEEEECCCC---------------CHHHHHHHHHHHHHHHTTCCEEEEEEEES
T ss_pred EEEeccCcHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 556654444433333333 4455667778999999999999999999996554
No 26
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=43.16 E-value=38 Score=21.64 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCccccccccCC--cchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 25 AGYGVYFGENNPLNVAGKVTG--RVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~~~~--~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
-|.+++..+|..+...- +.. ..-...||..|+..|... -...+..+.|++|.
T Consensus 38 VGAal~~~dG~i~~G~N-vEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 38 VGAALLTGDGRIFSGCN-IENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp EEEEEEETTSCEEEEEC-BCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred EEEEEEeCCCcEEEEEe-ccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 46667777876653221 221 234568999999999976 33445788999874
No 27
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.67 E-value=53 Score=18.81 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCcchHHHHHHHHhhhcC
Q psy3458 109 EELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAGW 151 (151)
Q Consensus 109 ~l~~~i~~~~~~~~~v~~~~v~~h~~~~~N~~AD~lA~~a~~~ 151 (151)
.-+++|...++..-..-+.+|.+-+...-|++-.+.-+.+.+|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsy 80 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSY 80 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEE
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcch
Confidence 3444444444434556667788877655677777666666654
No 28
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=32.93 E-value=33 Score=20.07 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=9.7
Q ss_pred chHHHHHHHHh
Q psy3458 137 GNMKADEMARD 147 (151)
Q Consensus 137 ~N~~AD~lA~~ 147 (151)
|++.||.+|++
T Consensus 22 g~~~A~~iA~k 32 (90)
T 1kn6_A 22 GQEAASAIAEE 32 (90)
T ss_dssp THHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 78999999985
No 29
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=32.76 E-value=54 Score=23.11 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=36.3
Q ss_pred EEEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 26 GYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 26 g~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
=+++++..+..+.....++ ...-+.+=..++...++++.+.|++.+++|.=|
T Consensus 20 HVAiIMDGNrRwAk~rgl~-r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 20 HVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp EEEEEECCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred EEEEEecCcHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 3556664443333333343 556778888999999999999999999999644
No 30
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=31.74 E-value=86 Score=19.78 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=34.7
Q ss_pred eEEEEEEcCCCccccccccC--CcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcH
Q psy3458 25 AGYGVYFGENNPLNVAGKVT--GRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQ 79 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~~~--~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~ 79 (151)
-|.++...+|..+...- +. .......||-.|+..|...-....+..+.+++|..
T Consensus 34 VGAAl~~~dG~i~~G~N-vEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 34 VGCSILTNNDVIFTGAN-VENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp EEEEEECTTSCEEEEEC-BCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred EEEEEEeCCCCEEEEEe-ecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 46667767776653221 12 13345789999999998764432377899998753
No 31
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=27.74 E-value=68 Score=20.32 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=34.2
Q ss_pred eEEEEEEcCCCccccccc-cCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCcH
Q psy3458 25 AGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQ 79 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~-~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs~ 79 (151)
-|.+++..+|..+...-. .........||-.||..|...- ...+..|.|.+|..
T Consensus 35 VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 35 VGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp EEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred EEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 466777778866532221 1113345789999999998753 23456888888753
No 32
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Probab=24.52 E-value=32 Score=22.65 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCCCcEEEEEccCCCC
Q psy3458 1 MDPDNHVVVFTDGACPR 17 (151)
Q Consensus 1 ~~~~~~~~iytDGs~~~ 17 (151)
+++.+.+.+||||-...
T Consensus 139 l~~gd~l~l~sDGl~e~ 155 (193)
T 3zt9_A 139 YQEGDLFLIHSDGIQEG 155 (193)
T ss_dssp CCTTCEEEEECTTSCTT
T ss_pred cCCCCEEEEECCCCCCc
Confidence 46788999999998753
No 33
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=24.31 E-value=1.8e+02 Score=20.23 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 46 RVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 46 ~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
...-..+=..++...++++.+.|++.+++|.=|
T Consensus 37 ~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 37 RAYGHKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 334456668899999999999999999999854
No 34
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=24.08 E-value=72 Score=15.59 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHcHh
Q psy3458 48 TNNNAEIQGAIHALKQAKS 66 (151)
Q Consensus 48 t~~~aEl~Al~~aL~~~~~ 66 (151)
....+|..|+..||+-+..
T Consensus 15 erIv~eCnavrqALQdLls 33 (40)
T 4e17_B 15 ERIVAECNAVRQALQDLLS 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4558999999999987754
No 35
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.30 E-value=63 Score=19.78 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHcHhcC
Q psy3458 46 RVTNNNAEIQGAIHALKQAKSAN 68 (151)
Q Consensus 46 ~~t~~~aEl~Al~~aL~~~~~~~ 68 (151)
...-++||-.|...|++.++.+|
T Consensus 69 G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 69 GSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHcC
Confidence 45789999999999999999875
No 36
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=23.11 E-value=28 Score=23.68 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=14.1
Q ss_pred CCCCCcEEEEEccCCCCC
Q psy3458 1 MDPDNHVVVFTDGACPRN 18 (151)
Q Consensus 1 ~~~~~~~~iytDGs~~~~ 18 (151)
+++.+.+.+||||-....
T Consensus 150 l~~GD~lll~SDGl~e~~ 167 (242)
T 3t91_A 150 LKAGDLLIMMSDGIFEGP 167 (242)
T ss_dssp CCTTCEEEEECHHHHTCS
T ss_pred eCCCCEEEEECCCcccCC
Confidence 467889999999987643
No 37
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=22.90 E-value=95 Score=21.84 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=33.7
Q ss_pred EEEEEcCCCccccccccCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 27 YGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 27 ~gv~~~~~~~~~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
++++...+..+.....++ ...-..+-..++...++++.+.|++.+++|.=|
T Consensus 21 VAiImDGN~RwAk~~gl~-r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 21 VAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp EEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred EEEEecCCHHHHHHcCCC-hhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 455554333322222232 334456668899999999999999999999865
No 38
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=22.51 E-value=2.1e+02 Score=20.34 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCCCCCCCceEEEEEEcCCCcc-------ccccccCCcchHHHHHHHHHHHHHHHcHhcCCc--eEEE
Q psy3458 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-------NVAGKVTGRVTNNNAEIQGAIHALKQAKSANID--RVCI 74 (151)
Q Consensus 4 ~~~~~iytDGs~~~~~~~~~~ag~gv~~~~~~~~-------~~~~~~~~~~t~~~aEl~Al~~aL~~~~~~~~~--~v~i 74 (151)
+..+-||+|=++..|..-. .-|++++-.-.+.. .+-..+.|....+.||..+-..+--.+...-.+ +|-|
T Consensus 60 ~~tLYVYIDPAfT~N~~AS-GTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrvaV 138 (279)
T 3n4p_A 60 GKTLYVYLDPAFTTNRKAS-GTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAV 138 (279)
T ss_dssp CCEEEEEEECC---------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CCeEEEEECCccccCCccc-cccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEEE
Confidence 4678999999998775421 25777665332221 122235567777888876654432222211223 6777
Q ss_pred EcCc
Q psy3458 75 KSDS 78 (151)
Q Consensus 75 ~tDs 78 (151)
++.|
T Consensus 139 EGNS 142 (279)
T 3n4p_A 139 EGNT 142 (279)
T ss_dssp BCSS
T ss_pred ecCc
Confidence 8776
No 39
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=22.16 E-value=84 Score=21.65 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 47 VTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 47 ~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
..-..+-..++...++++.+.|++.+++|.=|
T Consensus 26 ~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFS 57 (227)
T 2vg0_A 26 SYGYRMGAAKIAEMLRWCHEAGIELATVYLLS 57 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 34455667899999999999999999999743
No 40
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=21.66 E-value=30 Score=23.73 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.2
Q ss_pred CCCCCcEEEEEccCCCCC
Q psy3458 1 MDPDNHVVVFTDGACPRN 18 (151)
Q Consensus 1 ~~~~~~~~iytDGs~~~~ 18 (151)
+++.+.+.+||||-....
T Consensus 186 l~~gd~lll~TDGl~e~~ 203 (255)
T 3f79_A 186 LPPSFSLSLFSDGILDVL 203 (255)
T ss_dssp CCSSEEEEEECSCCCCCS
T ss_pred ECCCCEEEEECCCcCccc
Confidence 357788999999987653
No 41
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=21.45 E-value=31 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=14.3
Q ss_pred CCCCCcEEEEEccCCCCC
Q psy3458 1 MDPDNHVVVFTDGACPRN 18 (151)
Q Consensus 1 ~~~~~~~~iytDGs~~~~ 18 (151)
+++.+.+.+||||-....
T Consensus 153 l~~Gd~lll~TDGl~e~~ 170 (242)
T 3pu9_A 153 AEPGLTVILVSDGIIGAG 170 (242)
T ss_dssp CCTTCEEEEECHHHHTTT
T ss_pred eCCCCEEEEECcCcccCC
Confidence 467889999999987643
No 42
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=21.45 E-value=1.1e+02 Score=19.75 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCccccccc-cCCcchHHHHHHHHHHHHHHHcHhcCCceEEEEcCc
Q psy3458 25 AGYGVYFGENNPLNVAGK-VTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDS 78 (151)
Q Consensus 25 ag~gv~~~~~~~~~~~~~-~~~~~t~~~aEl~Al~~aL~~~~~~~~~~v~i~tDs 78 (151)
-|.++...+|..+...-. .........||-.||..|...-. ..+..|.|.+|.
T Consensus 48 VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~i~aiavv~~~ 101 (150)
T 3mpz_A 48 VGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGG-GRLVALSCVGPD 101 (150)
T ss_dssp CEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEEEEEEECTT
T ss_pred EEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcCC-CceEEEEEEcCC
Confidence 366777888877532221 11133467899999999987532 334577777653
Done!