Your job contains 1 sequence.
>psy3458
MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA
LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ
MESVKWEFVPGHGNSHGNMKADEMARDAAGW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3458
(151 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0023171 - symbol:rnh1 "ribonuclease H1" species:72... 357 1.1e-32 1
UNIPROTKB|I3LTQ9 - symbol:RNASEH1 "Uncharacterized protei... 342 4.2e-31 1
ZFIN|ZDB-GENE-040718-407 - symbol:rnaseh1 "ribonuclease H... 337 1.4e-30 1
RGD|1309012 - symbol:Rnaseh1 "ribonuclease H1" species:10... 336 1.8e-30 1
UNIPROTKB|F1NN23 - symbol:RNASEH1 "Uncharacterized protei... 335 2.3e-30 1
MGI|MGI:1335073 - symbol:Rnaseh1 "ribonuclease H1" specie... 335 2.3e-30 1
UNIPROTKB|F1N2X2 - symbol:RNASEH1 "Uncharacterized protei... 330 7.9e-30 1
UNIPROTKB|J9NUL8 - symbol:RNASEH1 "Uncharacterized protei... 325 2.7e-29 1
UNIPROTKB|O60930 - symbol:RNASEH1 "Ribonuclease H1" speci... 322 5.6e-29 1
UNIPROTKB|E2R8B0 - symbol:RNASEH1 "Uncharacterized protei... 312 6.4e-28 1
WB|WBGene00004382 - symbol:rnh-1.0 species:6239 "Caenorha... 272 1.1e-23 1
POMBASE|SPBC336.06c - symbol:rnh1 "ribonuclease H Rnh1 (p... 259 2.6e-22 1
ASPGD|ASPL0000032202 - symbol:AN5188 species:162425 "Emer... 258 1.1e-21 1
UNIPROTKB|P0A7Y4 - symbol:rnhA species:83333 "Escherichia... 226 8.3e-19 1
CGD|CAL0000560 - symbol:orf19.5614 species:5476 "Candida ... 216 9.5e-18 1
UNIPROTKB|Q5ABT7 - symbol:RNH11 "Putative uncharacterized... 216 9.5e-18 1
CGD|CAL0006207 - symbol:orf19.5564 species:5476 "Candida ... 207 8.6e-17 1
UNIPROTKB|Q5ABY6 - symbol:RNH12 "Putative uncharacterized... 207 8.6e-17 1
TIGR_CMR|CBU_0316 - symbol:CBU_0316 "ribonuclease H" spec... 206 1.1e-16 1
TIGR_CMR|VC_2234 - symbol:VC_2234 "ribonuclease HI" speci... 206 1.1e-16 1
TIGR_CMR|GSU_2071 - symbol:GSU_2071 "ribonuclease HI" spe... 201 3.7e-16 1
TIGR_CMR|NSE_0667 - symbol:NSE_0667 "ribonuclease HI" spe... 201 3.7e-16 1
TIGR_CMR|ECH_0263 - symbol:ECH_0263 "ribonuclease HI" spe... 199 6.0e-16 1
CGD|CAL0006204 - symbol:RNH1 species:5476 "Candida albica... 194 2.0e-15 1
UNIPROTKB|Q5ABY8 - symbol:RNH1 "Putative uncharacterized ... 194 2.0e-15 1
TIGR_CMR|APH_0109 - symbol:APH_0109 "ribonuclease H1" spe... 194 2.0e-15 1
TIGR_CMR|SO_2560 - symbol:SO_2560 "ribonuclease HI" speci... 190 5.4e-15 1
WB|WBGene00007303 - symbol:rnh-1.3 species:6239 "Caenorha... 186 1.4e-14 1
TIGR_CMR|VC_0498 - symbol:VC_0498 "ribonuclease HI, putat... 182 3.8e-14 1
TIGR_CMR|CPS_1701 - symbol:CPS_1701 "ribonuclease HI" spe... 180 6.2e-14 1
TIGR_CMR|SPO_3212 - symbol:SPO_3212 "ribonuclease HI" spe... 176 1.6e-13 1
TIGR_CMR|CJE_1808 - symbol:CJE_1808 "RNase H" species:195... 142 6.6e-10 1
SGD|S000004847 - symbol:RNH1 "Ribonuclease H1" species:49... 117 1.7e-06 1
ASPGD|ASPL0000037597 - symbol:AN2711 species:162425 "Emer... 112 1.5e-05 1
ASPGD|ASPL0000040226 - symbol:AN2661 species:162425 "Emer... 112 4.2e-05 1
>FB|FBgn0023171 [details] [associations]
symbol:rnh1 "ribonuclease H1" species:7227 "Drosophila
melanogaster" [GO:0004523 "ribonuclease H activity"
evidence=ISS;IDA] [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287 GO:GO:0003676
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 Pfam:PF01693 FlyBase:FBgn0023171
EMBL:AF032921 PIR:JC5787 HSSP:Q04740 ProteinModelPortal:O44114
STRING:O44114 PRIDE:O44114 InParanoid:O44114 ArrayExpress:O44114
Bgee:O44114 Uniprot:O44114
Length = 333
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 68/151 (45%), Positives = 97/151 (64%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+D + +V+V+TDG+C NG+ GA AGYGVYFG+N+ LN A V GRVTNN EIQ AIHA
Sbjct: 176 IDAEGYVIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHA 235
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--LHQI 118
+K A I ++CI +DSQF+I + W+ W+ W+ + +PV+N + +EL L Q
Sbjct: 236 IKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQD 295
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +VKW +V H GN AD++AR +
Sbjct: 296 NNI-TVKWNYVEAHKGIEGNEMADKLARQGS 325
>UNIPROTKB|I3LTQ9 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264
InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243 KO:K03469 OMA:WRLKSGG
Pfam:PF01693 GeneTree:ENSGT00390000003466 EMBL:FP476004
RefSeq:NP_001230610.1 UniGene:Ssc.36025 Ensembl:ENSSSCT00000027102
GeneID:100626539 KEGG:ssc:100626539 Uniprot:I3LTQ9
Length = 287
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 67/143 (46%), Positives = 90/143 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A AL+ AK+
Sbjct: 141 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 200
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+P W+ NGWR + K V NKE+ QEL ++ Q V+W
Sbjct: 201 QNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDFQEL-ERLAQGMDVQW 259
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 260 MHVPGHAGFIGNEEADRLAREGA 282
>ZFIN|ZDB-GENE-040718-407 [details] [associations]
symbol:rnaseh1 "ribonuclease H1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 ZFIN:ZDB-GENE-040718-407
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 EMBL:BX276180
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243 HOGENOM:HOG000040465
HOVERGEN:HBG002135 KO:K03469 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:BC076457 IPI:IPI00492798
RefSeq:NP_001002659.1 UniGene:Dr.16522 SMR:Q6DG94 STRING:Q6DG94
Ensembl:ENSDART00000062441 GeneID:436932 KEGG:dre:436932
InParanoid:Q6DG94 NextBio:20831359 Uniprot:Q6DG94
Length = 276
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 65/143 (45%), Positives = 91/143 (63%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NGK GA AG GVY+G ++P NVA ++ GR TN AE+Q A AL+QAK
Sbjct: 130 VVVYTDGCCSGNGKHGARAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKE 189
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
N +V + +DS+F I V W+ W+SNGWR G + NK++ Q+L +++ V W
Sbjct: 190 MNFKKVVLYTDSKFTINGVTSWVKTWKSNGWRLKSGGVIINKDDFQQLDKLNAELDVV-W 248
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD ++R+ A
Sbjct: 249 MHIPGHAGYTGNEEADRLSREGA 271
>RGD|1309012 [details] [associations]
symbol:Rnaseh1 "ribonuclease H1" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0042803 "protein homodimerization activity" evidence=IEA;ISO]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 RGD:1309012
GO:GO:0005739 GO:GO:0005634 GO:GO:0000287 GO:GO:0003676
GO:GO:0090305 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 GO:GO:0006264 InterPro:IPR009027 SUPFAM:SSF55658
CTD:246243 eggNOG:COG0328 HOGENOM:HOG000040465 HOVERGEN:HBG002135
KO:K03469 OMA:WRLKSGG Pfam:PF01693 OrthoDB:EOG47M1ZP EMBL:BC091209
IPI:IPI00365534 RefSeq:NP_001013115.1 UniGene:Rn.13139
ProteinModelPortal:Q5BK46 SMR:Q5BK46 STRING:Q5BK46 PRIDE:Q5BK46
Ensembl:ENSRNOT00000011819 GeneID:298933 KEGG:rno:298933
GeneTree:ENSGT00390000003466 InParanoid:Q5BK46 NextBio:644522
Genevestigator:Q5BK46 GermOnline:ENSRNOG00000008584 Uniprot:Q5BK46
Length = 285
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 64/143 (44%), Positives = 89/143 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAITQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ EL ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMEL-DELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>UNIPROTKB|F1NN23 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006264
"mitochondrial DNA replication" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739 GO:GO:0005634
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 InterPro:IPR009027
SUPFAM:SSF55658 Pfam:PF01693 GeneTree:ENSGT00390000003466
OMA:YEQSTNE EMBL:AADN02002886 IPI:IPI00582306
Ensembl:ENSGALT00000026438 Uniprot:F1NN23
Length = 293
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 62/142 (43%), Positives = 91/142 (64%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
VV+TDG C NG+ A AG GVY+G +PLN++ ++ GR TN AEI A A++QAKS
Sbjct: 148 VVYTDGCCSGNGRNRARAGIGVYWGPGHPLNISERLPGRQTNQRAEIHAACKAIEQAKSQ 207
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
NI ++ I +DS+F I + W+ W++NGWR + G V NKE+ Q+L + + ++W
Sbjct: 208 NIKKLIIYTDSKFTINGITSWVENWKTNGWRTSSGGSVINKEDFQKL-DSLSKGIEIQWM 266
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 267 HIPGHAGFQGNEEADRLAREGA 288
>MGI|MGI:1335073 [details] [associations]
symbol:Rnaseh1 "ribonuclease H1" species:10090 "Mus
musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006264 "mitochondrial DNA replication" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
MGI:MGI:1335073 GO:GO:0005739 GO:GO:0005634 GO:GO:0042803
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 CleanEx:MM_RNH1
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
HOGENOM:HOG000040465 HOVERGEN:HBG002135 Pfam:PF01693 EMBL:AF048993
EMBL:BC019411 IPI:IPI00117308 UniGene:Mm.10152
ProteinModelPortal:O70338 SMR:O70338 STRING:O70338
PhosphoSite:O70338 PRIDE:O70338 UCSC:uc007nft.2 InParanoid:O70338
OrthoDB:EOG47M1ZP ChiTaRS:RNASEH1 CleanEx:MM_RNASEH1
Genevestigator:O70338 GermOnline:ENSMUSG00000020630 Uniprot:O70338
Length = 285
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 63/143 (44%), Positives = 89/143 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V+V+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A+ QAK+
Sbjct: 139 VIVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGWR + GK V NKE+ EL ++ Q ++W
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMEL-DELTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
+PGH GN +AD +AR+ A
Sbjct: 258 MHIPGHSGFVGNEEADRLAREGA 280
>UNIPROTKB|F1N2X2 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264
InterPro:IPR009027 SUPFAM:SSF55658 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:DAAA02024811 EMBL:DAAA02024812
IPI:IPI00713771 Ensembl:ENSBTAT00000021600 Uniprot:F1N2X2
Length = 280
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 63/143 (44%), Positives = 89/143 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 134 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKA 193
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
+I ++ + +DS F I W+ W+ NGWR + GK V NKE+ EL ++ + ++W
Sbjct: 194 QDITKLVLYTDSMFTINGXXTWVKGWKQNGWRTSTGKEVTNKEDFAEL-ERLARGMDIQW 252
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 253 MHVPGHSGFRGNEEADRLAREGA 275
>UNIPROTKB|J9NUL8 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658 CTD:246243
KO:K03469 Pfam:PF01693 GeneTree:ENSGT00390000003466
EMBL:AAEX03010655 RefSeq:XP_532858.2 ProteinModelPortal:J9NUL8
Ensembl:ENSCAFT00000044124 GeneID:475648 KEGG:cfa:475648
Uniprot:J9NUL8
Length = 285
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 63/143 (44%), Positives = 88/143 (61%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ Q ++W
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVAL-EQLTQGMDIQW 257
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 258 MHVPGHSGFTGNEEADRLAREGA 280
>UNIPROTKB|O60930 [details] [associations]
symbol:RNASEH1 "Ribonuclease H1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0004540 "ribonuclease activity"
evidence=TAS] [GO:0006401 "RNA catabolic process" evidence=TAS]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0005739
GO:GO:0005634 EMBL:CH471053 GO:GO:0000287 GO:GO:0003723
GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004540 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 GO:GO:0006264 CleanEx:HS_RNH1
InterPro:IPR009027 SUPFAM:SSF55658 EMBL:AF048995 EMBL:AF048994
EMBL:AF039652 EMBL:AJ224117 EMBL:CR541820 EMBL:BT019670
EMBL:AK075490 EMBL:AC108488 EMBL:BC002973 IPI:IPI00000077
RefSeq:NP_002927.2 UniGene:Hs.568006 PDB:2QK9 PDB:2QKB PDB:2QKK
PDB:3BSU PDBsum:2QK9 PDBsum:2QKB PDBsum:2QKK PDBsum:3BSU
ProteinModelPortal:O60930 SMR:O60930 IntAct:O60930 STRING:O60930
PhosphoSite:O60930 PaxDb:O60930 PRIDE:O60930 DNASU:246243
Ensembl:ENST00000315212 GeneID:246243 KEGG:hsa:246243
UCSC:uc002qxs.3 CTD:246243 GeneCards:GC02M003592 H-InvDB:HIX0039191
HGNC:HGNC:18466 HPA:CAB032715 MIM:604123 neXtProt:NX_O60930
PharmGKB:PA38543 eggNOG:COG0328 HOGENOM:HOG000040465
HOVERGEN:HBG002135 InParanoid:O60930 KO:K03469 OMA:WRLKSGG
PhylomeDB:O60930 BindingDB:O60930 ChEMBL:CHEMBL5893
EvolutionaryTrace:O60930 GenomeRNAi:246243 NextBio:91896
ArrayExpress:O60930 Bgee:O60930 CleanEx:HS_RNASEH1
Genevestigator:O60930 GermOnline:ENSG00000171865 Pfam:PF01693
Uniprot:O60930
Length = 286
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QAK+
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI+++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L ++ Q ++W
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVAL-ERLTQGMDIQW 258
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
VPGH GN +AD +AR+ A
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
>UNIPROTKB|E2R8B0 [details] [associations]
symbol:RNASEH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658 Pfam:PF01693
GeneTree:ENSGT00390000003466 EMBL:AAEX03010655
Ensembl:ENSCAFT00000005229 OMA:YEQSTNE NextBio:20851446
Uniprot:E2R8B0
Length = 288
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 64/146 (43%), Positives = 88/146 (60%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
VVV+TDG C NG+ A AG GVY+G +P NV ++ GR TN AEI A A++QAK+
Sbjct: 139 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGRQTNQRAEIHAACKAIEQAKA 198
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
NI ++ + +DS F I + W+ W+ NGW+ + GK V NKE+ L Q+ Q V W
Sbjct: 199 QNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVAL-EQLTQGMDVFW 257
Query: 127 E---FVPGHGNSHGNMKADEMARDAA 149
+ VPGH GN +AD +AR+ A
Sbjct: 258 KRVMHVPGHSGFTGNEEADRLAREGA 283
>WB|WBGene00004382 [details] [associations]
symbol:rnh-1.0 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658
HOGENOM:HOG000040465 KO:K03469 OMA:WRLKSGG Pfam:PF01693
GeneTree:ENSGT00390000003466 HSSP:Q04740 EMBL:FO081284
UniGene:Cel.14915 GeneID:3565940 KEGG:cel:CELE_F59A6.6
UCSC:F59A6.6a CTD:3565940 NextBio:958453 RefSeq:NP_001040786.1
ProteinModelPortal:Q86MG7 SMR:Q86MG7 STRING:Q86MG7
EnsemblMetazoa:F59A6.6c WormBase:F59A6.6c InParanoid:Q86MG7
ArrayExpress:Q86MG7 Uniprot:Q86MG7
Length = 251
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 57/151 (37%), Positives = 87/151 (57%)
Query: 1 MDPD--NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAI 58
+DP+ N VV+TDGAC NG A AG+GVY+G+++ N G V G TNN E+
Sbjct: 95 IDPEFANAPVVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQ 154
Query: 59 HALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
A+++A + +V IK+DS +++ + W+ W+ GW+ + G V N++ L ++ +
Sbjct: 155 KAIEKAIEKRLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMKI-DNL 213
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
Q VK+ V GH GN KADE+AR A
Sbjct: 214 RQKLKVKFLHVRGHAGIDGNEKADELARKGA 244
>POMBASE|SPBC336.06c [details] [associations]
symbol:rnh1 "ribonuclease H Rnh1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=ISO] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
PomBase:SPBC336.06c GO:GO:0005730 GO:GO:0000287 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003676 GO:GO:0006401
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 Pfam:PF01693 EMBL:AF048992
PIR:T40244 PIR:T43641 RefSeq:NP_596126.1 ProteinModelPortal:Q9UST8
SMR:Q9UST8 STRING:Q9UST8 EnsemblFungi:SPBC336.06c.1 GeneID:2540252
KEGG:spo:SPBC336.06c OMA:MNEVEGD OrthoDB:EOG4ZGSNP NextBio:20801383
Uniprot:Q9UST8
Length = 264
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 55/143 (38%), Positives = 85/143 (59%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRV-TNNNAEIQGAIHALKQAKS 66
VV+ DG+ RNGK GA AG GV+FG ++P N++ + G TNN AE+Q I AL+
Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTSG 184
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
D + I+SDS + IK + W+PKW+ N ++ ++ +PV+N + + + +V
Sbjct: 185 ---D-LTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSD-RNVSL 239
Query: 127 EFVPGHGNSHGNMKADEMARDAA 149
E+V GH +GN +AD +AR A
Sbjct: 240 EYVKGHSTDYGNQQADMLARRGA 262
>ASPGD|ASPL0000032202 [details] [associations]
symbol:AN5188 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879
GO:GO:0003676 EMBL:BN001305 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658
Pfam:PF01693 OMA:PGVYTDW ProteinModelPortal:C8VF62
EnsemblFungi:CADANIAT00003184 HOGENOM:HOG000209450 Uniprot:C8VF62
Length = 463
Score = 258 (95.9 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 61/153 (39%), Positives = 87/153 (56%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKVTG-RVTNNNAEIQGAIHA 60
P + ++TDG+ RNG+V A AG GVYFG + NV+ + G R TN AE+ + A
Sbjct: 276 PPGMLRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRA 335
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
L A D V I +DSQ+ I CV W KW+SN W AD KPV+NK+ ++ +L +I +
Sbjct: 336 LDIAPRHR-D-VTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDE 393
Query: 121 MESVK----WEFVPGHGNSHGNMKADEMARDAA 149
++ +E+V GH GN AD +A + A
Sbjct: 394 RTELRVKTLFEWVKGHDADPGNEAADRLAVNGA 426
>UNIPROTKB|P0A7Y4 [details] [associations]
symbol:rnhA species:83333 "Escherichia coli K-12"
[GO:0004523 "ribonuclease H activity" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA;IDA] [GO:0004519 "endonuclease
activity" evidence=IDA] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IEA;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003676 EMBL:U70214
SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 EMBL:X04027 EMBL:K00985
PDB:3QIN PDB:3QIO PDBsum:3QIN PDBsum:3QIO eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203
EMBL:V00337 PIR:A92401 RefSeq:NP_414750.1 RefSeq:YP_488511.1
PDB:1F21 PDB:1G15 PDB:1GOA PDB:1GOB PDB:1GOC PDB:1JL1 PDB:1JL2
PDB:1JXB PDB:1KVA PDB:1KVB PDB:1KVC PDB:1LAV PDB:1LAW PDB:1RBR
PDB:1RBS PDB:1RBT PDB:1RBU PDB:1RBV PDB:1RCH PDB:1RDA PDB:1RDB
PDB:1RDC PDB:1RDD PDB:1RNH PDB:1WSE PDB:1WSF PDB:1WSG PDB:1WSH
PDB:1WSI PDB:1WSJ PDB:2RN2 PDB:2YV0 PDB:2Z1G PDB:2Z1H PDB:2Z1I
PDB:2Z1J PDB:3AA2 PDB:3AA3 PDB:3AA4 PDB:3AA5 PDBsum:1F21
PDBsum:1G15 PDBsum:1GOA PDBsum:1GOB PDBsum:1GOC PDBsum:1JL1
PDBsum:1JL2 PDBsum:1JXB PDBsum:1KVA PDBsum:1KVB PDBsum:1KVC
PDBsum:1LAV PDBsum:1LAW PDBsum:1RBR PDBsum:1RBS PDBsum:1RBT
PDBsum:1RBU PDBsum:1RBV PDBsum:1RCH PDBsum:1RDA PDBsum:1RDB
PDBsum:1RDC PDBsum:1RDD PDBsum:1RNH PDBsum:1WSE PDBsum:1WSF
PDBsum:1WSG PDBsum:1WSH PDBsum:1WSI PDBsum:1WSJ PDBsum:2RN2
PDBsum:2YV0 PDBsum:2Z1G PDBsum:2Z1H PDBsum:2Z1I PDBsum:2Z1J
PDBsum:3AA2 PDBsum:3AA3 PDBsum:3AA4 PDBsum:3AA5
ProteinModelPortal:P0A7Y4 SMR:P0A7Y4 DIP:DIP-47864N IntAct:P0A7Y4
MINT:MINT-1224022 PRIDE:P0A7Y4 EnsemblBacteria:EBESCT00000004699
EnsemblBacteria:EBESCT00000018225 GeneID:12934461 GeneID:946955
KEGG:ecj:Y75_p0205 KEGG:eco:b0214 PATRIC:32115541 EchoBASE:EB0853
EcoGene:EG10860 BioCyc:EcoCyc:EG10860-MONOMER
BioCyc:ECOL316407:JW0204-MONOMER BioCyc:MetaCyc:EG10860-MONOMER
BindingDB:P0A7Y4 ChEMBL:CHEMBL1770039 EvolutionaryTrace:P0A7Y4
Genevestigator:P0A7Y4 Uniprot:P0A7Y4
Length = 155
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 56/146 (38%), Positives = 79/146 (54%)
Query: 7 VVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
V +FTDG+C N G GYG Y G + AG R TNN E+ AI AL+
Sbjct: 5 VEIFTDGSCLGNPGPG---GYGAILRYRGREKTFS-AGYT--RTTNNRMELMAAIVALEA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ +
Sbjct: 59 LKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
+KWE+V GH N + DE+AR AA
Sbjct: 116 IKWEWVKGHAGHPENERCDELARAAA 141
>CGD|CAL0000560 [details] [associations]
symbol:orf19.5614 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006401 "RNA catabolic
process" evidence=IEA] [GO:0031505 "fungal-type cell wall
organization" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR017067 Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879
CGD:CAL0000560 GO:GO:0000287 GO:GO:0003676 SUPFAM:SSF53098
Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719174.1 ProteinModelPortal:Q5ABT7
GeneID:3639183 KEGG:cal:CaO19.5614 Uniprot:Q5ABT7
Length = 285
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 62/164 (37%), Positives = 83/164 (50%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE- 113
LK Q+ A + I SDS++ I+ V EW W NGW+ + G+ V NK+ +QE
Sbjct: 177 LKNIHNDLQSGKAT-GKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQET 235
Query: 114 --LLHQIGQMESVK-W---EFV--PGHGNSHGNMKADEMARDAA 149
L + I + K W EFV GH GN AD +A A
Sbjct: 236 VALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGA 279
>UNIPROTKB|Q5ABT7 [details] [associations]
symbol:RNH11 "Putative uncharacterized protein RNH11"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 InterPro:IPR017067 Pfam:PF00075
PIRSF:PIRSF036852 PROSITE:PS50879 CGD:CAL0000560 GO:GO:0000287
GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658
eggNOG:COG0328 KO:K03469 Pfam:PF01693 RefSeq:XP_719174.1
ProteinModelPortal:Q5ABT7 GeneID:3639183 KEGG:cal:CaO19.5614
Uniprot:Q5ABT7
Length = 285
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 62/164 (37%), Positives = 83/164 (50%)
Query: 9 VFTDGACPRNGKVG-ASAGYGVYFGENN------PLNVAGKVTG-RVTNNNAEIQGAIHA 60
V+ DGA NG+ A +GYGVY+G N+ PL+ K T + TN AE+ G HA
Sbjct: 117 VYVDGASRGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 176
Query: 61 LK------QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE- 113
LK Q+ A + I SDS++ I+ V EW W NGW+ + G+ V NK+ +QE
Sbjct: 177 LKNIHNDLQSGKAT-GKTEIHSDSKYAIQSVNEWSSNWAKNGWKNSKGETVANKDLIQET 235
Query: 114 --LLHQIGQMESVK-W---EFV--PGHGNSHGNMKADEMARDAA 149
L + I + K W EFV GH GN AD +A A
Sbjct: 236 VALKNSINKTYQDKNWGNLEFVHVKGHAGDPGNEAADRLANQGA 279
>CGD|CAL0006207 [details] [associations]
symbol:orf19.5564 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 EMBL:AACQ01000034
InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328 KO:K03469
Pfam:PF01693 RefSeq:XP_719126.1 ProteinModelPortal:Q5ABY6
GeneID:3639238 KEGG:cal:CaO19.5564 Uniprot:Q5ABY6
Length = 232
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 53/153 (34%), Positives = 78/153 (50%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVA---GKV--TG-RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ +V G R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 63 QAKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---L 114
+ D + I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 115 LHQIGQ-MESVKWEFVPG-HGNSHGNMKADEMA 145
I + + W + H H M+ +E A
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGMEGNEEA 209
Score = 144 (55.7 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 45/144 (31%), Positives = 65/144 (45%)
Query: 18 NGKVGASAGYGVYFGENN--PLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANID----- 70
N K G YG N PL+ R TN AE+ HALK + D
Sbjct: 70 NAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALKNILNELQDETEKG 129
Query: 71 RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQIGQ------M 121
+ I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L I +
Sbjct: 130 KAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDLYESINEEYDDRDW 189
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
S+++ V GH GN +AD +A
Sbjct: 190 GSLRFVHVKGHSGMEGNEEADRLA 213
>UNIPROTKB|Q5ABY6 [details] [associations]
symbol:RNH12 "Putative uncharacterized protein RNH12"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879 GO:GO:0003676
SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
EMBL:AACQ01000034 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719126.1 ProteinModelPortal:Q5ABY6
GeneID:3639238 KEGG:cal:CaO19.5564 Uniprot:Q5ABY6
Length = 232
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 53/153 (34%), Positives = 78/153 (50%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVA---GKV--TG-RVTNNNAEIQGAIHALK 62
V+ DGAC NG+ A GYGVY+G+ +P NV+ +V G R TN AE+ HALK
Sbjct: 57 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 116
Query: 63 QAKSANID-----RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---L 114
+ D + I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L
Sbjct: 117 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 176
Query: 115 LHQIGQ-MESVKWEFVPG-HGNSHGNMKADEMA 145
I + + W + H H M+ +E A
Sbjct: 177 YESINEEYDDRDWGSLRFVHVKGHSGMEGNEEA 209
Score = 144 (55.7 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 45/144 (31%), Positives = 65/144 (45%)
Query: 18 NGKVGASAGYGVYFGENN--PLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANID----- 70
N K G YG N PL+ R TN AE+ HALK + D
Sbjct: 70 NAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALKNILNELQDETEKG 129
Query: 71 RVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQE---LLHQIGQ------M 121
+ I SDS + I C+ +W KW NGW+ + G+ + N+E ++E L I +
Sbjct: 130 KAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDLYESINEEYDDRDW 189
Query: 122 ESVKWEFVPGHGNSHGNMKADEMA 145
S+++ V GH GN +AD +A
Sbjct: 190 GSLRFVHVKGHSGMEGNEEADRLA 213
>TIGR_CMR|CBU_0316 [details] [associations]
symbol:CBU_0316 "ribonuclease H" species:227377 "Coxiella
burnetii RSA 493" [GO:0004523 "ribonuclease H activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203
RefSeq:NP_819359.1 HSSP:P0A7Y4 ProteinModelPortal:Q83EK3
GeneID:1208198 KEGG:cbu:CBU_0316 PATRIC:17929323
BioCyc:CBUR227377:GJ7S-323-MONOMER Uniprot:Q83EK3
Length = 154
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 50/142 (35%), Positives = 75/142 (52%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGEN-NPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
N V ++ DGAC N G G+GV N + + G V TNN E+ AI LK
Sbjct: 7 NIVYLYCDGACRGNPGPG---GWGVLLRYNQHERQLHGGVAN-TTNNQMELTAAIEGLKS 62
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K +V + +DSQ++ + + EW+P W+ GWR ++ KPV+N + L E L + + +
Sbjct: 63 LKKPC--QVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKN-QPLWETLEREVERHT 119
Query: 124 VKWEFVPGHGNSHGNMKADEMA 145
+ W +V GH N ADE+A
Sbjct: 120 IVWHWVKGHSGHAENEIADELA 141
>TIGR_CMR|VC_2234 [details] [associations]
symbol:VC_2234 "ribonuclease HI" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004523 "ribonuclease H activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328
KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203 PIR:G82101
RefSeq:NP_231865.1 ProteinModelPortal:Q9KPX8 SMR:Q9KPX8
DNASU:2613156 GeneID:2613156 KEGG:vch:VC2234 PATRIC:20083513
Uniprot:Q9KPX8
Length = 156
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 48/146 (32%), Positives = 74/146 (50%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQ 63
+ V +FTDG+C N G GYG+ + TNN E+ A+ AL+
Sbjct: 2 NKQVEIFTDGSCLGNPGPG---GYGIVMRYKQVEKTLARGYRLTTNNRMEMLAAVMALQA 58
Query: 64 AKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMES 123
K RV + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L + + +
Sbjct: 59 LKEPC--RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQ- 115
Query: 124 VKWEFVPGHGNSHGNMKADEMARDAA 149
V+W +V GH N DE+AR AA
Sbjct: 116 VEWRWVKGHAGHRENEMCDELARQAA 141
>TIGR_CMR|GSU_2071 [details] [associations]
symbol:GSU_2071 "ribonuclease HI" species:243231
"Geobacter sulfurreducens PCA" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203
HSSP:P0A7Y4 RefSeq:NP_953120.1 ProteinModelPortal:Q74BH0 SMR:Q74BH0
GeneID:2687939 KEGG:gsu:GSU2071 PATRIC:22027003
BioCyc:GSUL243231:GH27-1997-MONOMER Uniprot:Q74BH0
Length = 149
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/142 (35%), Positives = 70/142 (49%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
V VF DGAC N VG GYG + G TNN E+ AI AL +A S
Sbjct: 5 VEVFCDGACSGNPGVG---GYGAILRYGSAEKELSGADGDTTNNRMELTAAIRAL-EALS 60
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKW 126
V I +DSQ+++K + EW+ W GW + +PV N++ L E L ++ V+W
Sbjct: 61 RPC-AVTITTDSQYLVKGMTEWLSGWVRRGWVNSKKEPVLNRD-LWERLRELTGKHQVRW 118
Query: 127 EFVPGHGNSHGNMKADEMARDA 148
+V GH N + D +AR A
Sbjct: 119 VWVRGHNGHPENERCDALARRA 140
>TIGR_CMR|NSE_0667 [details] [associations]
symbol:NSE_0667 "ribonuclease HI" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0004523 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0328 HOGENOM:HOG000040465 KO:K03469 RefSeq:YP_506545.1
ProteinModelPortal:Q2GDA1 STRING:Q2GDA1 GeneID:3931461
KEGG:nse:NSE_0667 PATRIC:22681347 OMA:AELSKHT
ProtClustDB:CLSK2527792 BioCyc:NSEN222891:GHFU-681-MONOMER
Uniprot:Q2GDA1
Length = 151
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 47/142 (33%), Positives = 70/142 (49%)
Query: 8 VVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSA 67
V++TDGAC N G A + G N + ++G+ TNN E+ I AL+ +
Sbjct: 5 VIYTDGACLGNPGPGGWAAVIIQRGTNEKI-ISGREADS-TNNKMELLAVIKALESFEQK 62
Query: 68 NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWE 127
RV + +DS ++ K + W+ W N WR + G V+NKE + LH I +V+W
Sbjct: 63 G-KRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKE-MWVRLHGIAAAHTVRWL 120
Query: 128 FVPGHGNSHGNMKADEMARDAA 149
+V H H N D +AR A
Sbjct: 121 WVKAHNGDHYNEIVDRVARKEA 142
>TIGR_CMR|ECH_0263 [details] [associations]
symbol:ECH_0263 "ribonuclease HI" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203
RefSeq:YP_507084.1 ProteinModelPortal:Q2GHJ9 STRING:Q2GHJ9
GeneID:3927016 KEGG:ech:ECH_0263 PATRIC:20576043
BioCyc:ECHA205920:GJNR-263-MONOMER Uniprot:Q2GHJ9
Length = 146
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 51/146 (34%), Positives = 73/146 (50%)
Query: 2 DPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
D N VV++TDGAC +G G V ++N + G + TNN E+ I AL
Sbjct: 3 DELNKVVIYTDGAC--SGNPGPGGWAAVLLFDDNEKTICGNDSD-TTNNRMELTAVIEAL 59
Query: 62 KQAKSA-NIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
K K A N+D + +DS ++ + W+ KW+ NGW+ A+ PV+N E EL +
Sbjct: 60 KLLKVAYNVD---LYTDSVYVKDGITLWIRKWKVNGWKTANKMPVKNLELWLEL-DSLAN 115
Query: 121 MESVKWEFVPGHGNSHGNMKADEMAR 146
V W +V H N KAD +AR
Sbjct: 116 FHKVTWYWVRAHVGDLYNQKADMLAR 141
>CGD|CAL0006204 [details] [associations]
symbol:RNH1 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 EMBL:AACQ01000034
EMBL:AACQ01000033 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719125.1 RefSeq:XP_719242.1
ProteinModelPortal:Q5ABY8 GeneID:3639089 GeneID:3639237
KEGG:cal:CaO19.13009 KEGG:cal:CaO19.5563 CGD:CAL0068176
Uniprot:Q5ABY8
Length = 233
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/161 (33%), Positives = 78/161 (48%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-----GRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
Query: 63 QA-----KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ---EL 114
+ + I SDS + IKC+ +W KW NGW G+ + N + + EL
Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176
Query: 115 LHQIG-QMESVKW-EF----VPGHGNSHGNMKADEMARDAA 149
I + + W E V GH + GN +AD +A AA
Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAA 217
>UNIPROTKB|Q5ABY8 [details] [associations]
symbol:RNH1 "Putative uncharacterized protein RNH13"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 EMBL:AACQ01000034
EMBL:AACQ01000033 InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328
KO:K03469 Pfam:PF01693 RefSeq:XP_719125.1 RefSeq:XP_719242.1
ProteinModelPortal:Q5ABY8 GeneID:3639089 GeneID:3639237
KEGG:cal:CaO19.13009 KEGG:cal:CaO19.5563 CGD:CAL0068176
Uniprot:Q5ABY8
Length = 233
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/161 (33%), Positives = 78/161 (48%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-----GRV-TNNNAEIQGAIHALK 62
++ DGAC NG A AGYGVY+G+ + NV+ + G + TN AE+ HAL+
Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116
Query: 63 QA-----KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQ---EL 114
+ + I SDS + IKC+ +W KW NGW G+ + N + + EL
Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176
Query: 115 LHQIG-QMESVKW-EF----VPGHGNSHGNMKADEMARDAA 149
I + + W E V GH + GN +AD +A AA
Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAA 217
>TIGR_CMR|APH_0109 [details] [associations]
symbol:APH_0109 "ribonuclease H1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0000287 GO:GO:0003676 GO:GO:0006401 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0328 HOGENOM:HOG000040465 KO:K03469
OMA:MQEIEIF RefSeq:YP_504737.1 ProteinModelPortal:Q2GLL4
STRING:Q2GLL4 GeneID:3930711 KEGG:aph:APH_0109 PATRIC:20948780
ProtClustDB:CLSK747275 BioCyc:APHA212042:GHPM-144-MONOMER
Uniprot:Q2GLL4
Length = 150
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 51/151 (33%), Positives = 77/151 (50%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYF----GENNPLNVAGKVTGRVTNNNAEIQG 56
MD VV++TDGAC N G G+G F GE ++G + TNN E+
Sbjct: 1 MD-SGQVVIYTDGACSGNPGPG---GWGAVFLFSGGEER--RISGGCSD-TTNNRMELSA 53
Query: 57 AIHALKQA-KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELL 115
I AL + N VC+++DS ++ + W+ KW+SNGW+ A V+N + L L
Sbjct: 54 VIEALGALDRQCN---VCVRTDSVYVKNGITTWIHKWKSNGWQTASKSAVKNVD-LWMQL 109
Query: 116 HQIGQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ +V WE+V H + N++AD +AR
Sbjct: 110 EALTLKHNVTWEWVKAHAGNRYNVEADALAR 140
>TIGR_CMR|SO_2560 [details] [associations]
symbol:SO_2560 "ribonuclease HI" species:211586 "Shewanella
oneidensis MR-1" [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_00042 InterPro:IPR002156 InterPro:IPR012337
InterPro:IPR022892 Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737
GO:GO:0046872 GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328
HOGENOM:HOG000040465 KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203
RefSeq:NP_718146.1 PDB:2E4L PDB:2ZQB PDBsum:2E4L PDBsum:2ZQB
ProteinModelPortal:Q8EE30 SMR:Q8EE30 GeneID:1170265
KEGG:son:SO_2560 PATRIC:23524749 EvolutionaryTrace:Q8EE30
Uniprot:Q8EE30
Length = 158
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 9 VFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
+FTDG+C N G GYG+ Y G ++ +T TNN E+ I AL+ K
Sbjct: 9 IFTDGSCLGNPGPG---GYGIVMNYKGHTKEMSDGFSLT---TNNRMELLAPIVALEALK 62
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
++ + SDSQ+M + + W+ W+ GW ++ PV+N + L + L + Q+ +
Sbjct: 63 EPC--KIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVD-LWKRLDKAAQLHQID 119
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
W +V GH N + D++AR AA
Sbjct: 120 WRWVKGHAGHAENERCDQLARAAA 143
>WB|WBGene00007303 [details] [associations]
symbol:rnh-1.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 PROSITE:PS50879 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328 HOGENOM:HOG000040465
KO:K03469 GeneTree:ENSGT00390000003466 EMBL:Z81461 PIR:T18916
RefSeq:NP_492581.1 HSSP:P00647 ProteinModelPortal:Q9XVE6 SMR:Q9XVE6
DIP:DIP-24980N IntAct:Q9XVE6 MINT:MINT-1040043 STRING:Q9XVE6
EnsemblMetazoa:C04F12.9 GeneID:182229 KEGG:cel:CELE_C04F12.9
UCSC:C04F12.9 CTD:182229 WormBase:C04F12.9 InParanoid:Q9XVE6
OMA:HISINTD NextBio:916840 Uniprot:Q9XVE6
Length = 139
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 40/130 (30%), Positives = 72/130 (55%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVT-GRVTNNNAEIQGAIHALKQAKSAN 68
+TDG+ NG+ G+ GYGV+ + NV+G G TNN E++ HA + A+
Sbjct: 6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMARDVP 65
Query: 69 IDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME----SV 124
V I +DS+ V +W W+SNG++ + G+ V+N++ ++++ + ++ +V
Sbjct: 66 DSHVRIHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSGKTV 125
Query: 125 KWEFVPGHGN 134
++E V GH N
Sbjct: 126 EFEHVRGHSN 135
>TIGR_CMR|VC_0498 [details] [associations]
symbol:VC_0498 "ribonuclease HI, putative" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GenomeReviews:AE003852_GR GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0004523 KO:K03469 HSSP:P00647 EMBL:AE004136
PIR:D82315 RefSeq:NP_230152.1 ProteinModelPortal:Q9KUL7
DNASU:2615292 GeneID:2615292 KEGG:vch:VC0498 PATRIC:20080087
OMA:NNRAEIH ProtClustDB:PRK08719 Uniprot:Q9KUL7
Length = 146
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 9 VFTDGACPRNGKVGASAGYG-VYFGENNPLNVAGKVTGRVTNNNAEIQ--GAIHALKQAK 65
++ DGA P N G G V E+N + +T +NAE++ I AL+ A+
Sbjct: 5 IYVDGAAPNNQYGCTRGGIGLVVMDEDNEIVHEESITINRKTDNAELELLALIEALEYAE 64
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
++ I SDS + +K WM W+ GWR+AD KPV+N++ Q++ ++ + V+
Sbjct: 65 DGDV----IYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQV-DELSSRKYVE 119
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
V H GN +AD +A +AA
Sbjct: 120 VFKVKAHSGIEGNERADLLAVEAA 143
>TIGR_CMR|CPS_1701 [details] [associations]
symbol:CPS_1701 "ribonuclease HI" species:167879
"Colwellia psychrerythraea 34H" [GO:0004523 "ribonuclease H
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR002156 InterPro:IPR012337 Pfam:PF00075
PROSITE:PS50879 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 Gene3D:3.40.970.10
InterPro:IPR011320 GO:GO:0004523 InterPro:IPR009027 SUPFAM:SSF55658
eggNOG:COG0328 HOGENOM:HOG000040465 KO:K03469 OMA:WRLKSGG
Pfam:PF01693 RefSeq:YP_268439.1 ProteinModelPortal:Q484S6
STRING:Q484S6 GeneID:3519641 KEGG:cps:CPS_1701 PATRIC:21466573
ProtClustDB:CLSK932279 BioCyc:CPSY167879:GI48-1778-MONOMER
Uniprot:Q484S6
Length = 272
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 47/146 (32%), Positives = 72/146 (49%)
Query: 7 VVVFTDGAC-PRNGKVGASAGYGVY-FGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ ++ DGAC P GK G G VY G+ L G TNN AE+ G + A + A
Sbjct: 101 IEIYCDGACSPNPGKSGT--GLAVYELGKVTSLYY-GLYLPNGTNNTAELSGMLSAFQIA 157
Query: 65 K---SANIDR-VCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+ N ++ +CI SDS++ I + +W W++ GW + G+ ++N +Q+
Sbjct: 158 QHFIDKNSEQSICILSDSKYSIDSITKWAKGWKAKGWTRGKGEEIKNLALIQQCYALYKT 217
Query: 121 MES-VKWEFVPGHGNSHGNMKADEMA 145
M + + V GH N GN AD MA
Sbjct: 218 MHTKITIRHVKGHANIEGNELADRMA 243
>TIGR_CMR|SPO_3212 [details] [associations]
symbol:SPO_3212 "ribonuclease HI" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004523 "ribonuclease H activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00042
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR022892
Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0003676 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328 HOGENOM:HOG000040465
KO:K03469 OMA:MQEIEIF ProtClustDB:PRK00203 RefSeq:YP_168415.1
ProteinModelPortal:Q5LNJ2 GeneID:3195666 KEGG:sil:SPO3212
PATRIC:23379871 Uniprot:Q5LNJ2
Length = 155
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 48/143 (33%), Positives = 73/143 (51%)
Query: 10 FTDGACPRNGKVGASAGYGVYFG--ENNPLNVAGKVTG---RVTNNNAEIQGAIHALKQA 64
+TDGAC N G G+GV E + ++ G TNN E+ AI+AL+
Sbjct: 7 YTDGACSGNPGPG---GWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINALETL 63
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME-S 123
+ + ++ + +DS ++ V W+ W+ NGW+ A KPV+N E Q L + Q
Sbjct: 64 ERPS--KITVVTDSAYVKNGVTGWIFGWKRNGWKTAGKKPVKNVELWQRL--DLAQARHD 119
Query: 124 VKWEFVPGHGNSHGNMKADEMAR 146
V W++V GH N +ADE+AR
Sbjct: 120 VTWKWVKGHAGHPENERADELAR 142
>TIGR_CMR|CJE_1808 [details] [associations]
symbol:CJE_1808 "RNase H" species:195099 "Campylobacter
jejuni RM1221" [GO:0004523 "ribonuclease H activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00042
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR022892
Pfam:PF00075 PROSITE:PS50879 GO:GO:0005737 GO:GO:0046872
GO:GO:0003676 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0328 HOGENOM:HOG000040465
KO:K03469 RefSeq:YP_179778.1 ProteinModelPortal:Q5HSF7
STRING:Q5HSF7 GeneID:3232435 KEGG:cjr:CJE1808 PATRIC:20045438
OMA:MQEIEIF ProtClustDB:PRK00203
BioCyc:CJEJ195099:GJC0-1842-MONOMER Uniprot:Q5HSF7
Length = 146
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 39/144 (27%), Positives = 67/144 (46%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAK 65
H+ ++TDG+C N G A Y + + E + TNN E+ I +LK K
Sbjct: 3 HIEIYTDGSCLNNPGFGGWA-YILRYKEYQKEGFGAEAN--TTNNRMELMAIIESLKALK 59
Query: 66 SANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVK 125
+ + +DS M++ + EW+ GW K D K +N + +E + ++ + +K
Sbjct: 60 EPC--EISLFTDSNLMVQSINEWL-----EGWIKKDFKGKKNIDLWKEYI-KVAKSHKIK 111
Query: 126 WEFVPGHGNSHGNMKADEMARDAA 149
+V H N + D +AR+AA
Sbjct: 112 AFWVKAHNGHLENERCDTLAREAA 135
>SGD|S000004847 [details] [associations]
symbol:RNH1 "Ribonuclease H1" species:4932 "Saccharomyces
cerevisiae" [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0005622
"intracellular" evidence=TAS] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR002156 InterPro:IPR012337 InterPro:IPR017067
Pfam:PF00075 PIRSF:PIRSF036852 PROSITE:PS50879 SGD:S000004847
GO:GO:0005634 GO:GO:0000287 GO:GO:0003676 GO:GO:0006401
EMBL:BK006946 SUPFAM:SSF53098 Gene3D:3.40.970.10 InterPro:IPR011320
GO:GO:0004523 EMBL:Z49939 InterPro:IPR009027 SUPFAM:SSF55658
EMBL:X57160 eggNOG:COG0328 KO:K03469 Pfam:PF01693
GeneTree:ENSGT00390000003466 OrthoDB:EOG4ZGSNP PIR:S57601
RefSeq:NP_013961.1 PDB:1QHK PDBsum:1QHK ProteinModelPortal:Q04740
SMR:Q04740 DIP:DIP-6787N IntAct:Q04740 MINT:MINT-624702
STRING:Q04740 PaxDb:Q04740 PeptideAtlas:Q04740 EnsemblFungi:YMR234W
GeneID:855274 KEGG:sce:YMR234W CYGD:YMR234w HOGENOM:HOG000066052
OMA:PGVYTDW EvolutionaryTrace:Q04740 NextBio:978894
Genevestigator:Q04740 GermOnline:YMR234W Uniprot:Q04740
Length = 348
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 48/162 (29%), Positives = 81/162 (50%)
Query: 9 VFTDGACPRNGKVGASAGYGVYFGENNPL-NVAGKV-TGRVTNNNAEIQGAIHALKQA-- 64
V+ DG+ NG + AGYG YF E P N++ + +G TNN AEI+ ALK+
Sbjct: 190 VYCDGSSFGNGTSSSRAGYGAYF-EGAPEENISEPLLSGAQTNNRAEIEAVSEALKKIWE 248
Query: 65 KSANI-DRVC--IKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
K N ++V IK+DS+++ K + + ++ + +K +G P N + + L+ + ++
Sbjct: 249 KLTNEKEKVNYQIKTDSEYVTKLLND---RYMTYDNKKLEGLP--NSDLIVPLVQRFVKV 303
Query: 122 ESV------------KW--EFVPGHGNSHGNMKADEMARDAA 149
+ K+ E+V GH GN AD +A+ A
Sbjct: 304 KKYYELNKECFKNNGKFQIEWVKGHDGDPGNEMADFLAKKGA 345
>ASPGD|ASPL0000037597 [details] [associations]
symbol:AN2711 species:162425 "Emericella nidulans"
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000477 InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 Pfam:PF00078 PROSITE:PS50878
PROSITE:PS50879 EMBL:BN001306 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0003964 GO:GO:0006278 GO:GO:0004523 eggNOG:KOG1075
EMBL:AACD01000047 HOGENOM:HOG000137572 RefSeq:XP_660315.1
ProteinModelPortal:Q5B9R9 EnsemblFungi:CADANIAT00010404
GeneID:2874494 KEGG:ani:AN2711.2 OMA:TEMIHIT OrthoDB:EOG4WDHKX
Uniprot:Q5B9R9
Length = 666
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 39/148 (26%), Positives = 67/148 (45%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V++DG+ R G+ GA GY +YFG G R +AEI GA+ L+ A
Sbjct: 363 ISVYSDGS--RTGQ-GAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAA-- 417
Query: 67 ANIDRVCIKSDSQFMI--------KCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
+ + C+ +Q +I + + P +G ++ G+ E +L +
Sbjct: 418 --LGQPCVGYSTQLVILLDNLAAASLLASYRPTPHRHGLSESFGQLATQWLEAPSILTRP 475
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ V+W +PGH GN AD++A+
Sbjct: 476 RKPLQVRW--IPGHSGIAGNELADKLAK 501
>ASPGD|ASPL0000040226 [details] [associations]
symbol:AN2661 species:162425 "Emericella nidulans"
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000477 InterPro:IPR002156
InterPro:IPR012337 Pfam:PF00075 Pfam:PF00078 PROSITE:PS50878
PROSITE:PS50879 Pfam:PF03372 EMBL:BN001306 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004523 HOGENOM:HOG000137551
OrthoDB:EOG4N8VCV EMBL:AACD01000046 RefSeq:XP_660265.1
ProteinModelPortal:Q5B9W9 EnsemblFungi:CADANIAT00010455
GeneID:2874313 KEGG:ani:AN2661.2 OMA:NTITQTH Uniprot:Q5B9W9
Length = 1538
Score = 112 (44.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 39/148 (26%), Positives = 67/148 (45%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ V++DG+ R G+ GA GY +YFG G R +AEI GA+ L+ A
Sbjct: 1235 ISVYSDGS--RTGQ-GAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAA-- 1289
Query: 67 ANIDRVCIKSDSQFMI--------KCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQI 118
+ + C+ +Q +I + + P +G ++ G+ E +L +
Sbjct: 1290 --LGQPCVGYSTQLVILLDNLAAASLLASYRPTPHRHGLSESFGQLATQWLEAPSILTRP 1347
Query: 119 GQMESVKWEFVPGHGNSHGNMKADEMAR 146
+ V+W +PGH GN AD++A+
Sbjct: 1348 RKPLQVRW--IPGHSGIAGNELADKLAK 1373
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 151 151 0.00097 104 3 11 23 0.39 32
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 603 (64 KB)
Total size of DFA: 168 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.13u 0.09s 15.22t Elapsed: 00:00:16
Total cpu time: 15.13u 0.09s 15.22t Elapsed: 00:00:17
Start: Thu Aug 15 11:37:57 2013 End: Thu Aug 15 11:38:14 2013