RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3458
(151 letters)
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 166 bits (422), Expect = 6e-54
Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ VVV+TDG C NG+ AG GVY+G +PLNV ++ GR TN AEI A A++QA
Sbjct: 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 65
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
K+ NI+++ + ++S F I + W+ W+ NGW+ + GK V NKE+ L M+ +
Sbjct: 66 KTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-I 124
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+W VPGH GN +AD +AR+ A
Sbjct: 125 QWMHVPGHSGFIGNEEADRLAREGA 149
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 118 bits (299), Expect = 2e-35
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
+ DGA R K+G G V T TN E+Q AL+ +
Sbjct: 11 GAETFYVDGAANRETKLG---KAGYVTNRGRQKVVTLTDT---TNQKTELQAIYLALQDS 64
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
V I +DSQ+ + + +W+ W+ GW+ AD KPV+N + + +++ Q+ + E V
Sbjct: 65 GL----EVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKV 120
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+VP H GN + D++
Sbjct: 121 YLAWVPAHKGIGGNEQVDKLVSAGI 145
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 108 bits (270), Expect = 7e-31
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 3 PDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALK 62
PD +TDG+ AG V + A + + AE+ ALK
Sbjct: 20 PDADYTWYTDGSSFLQEGQR-RAGAAVTTE--TEVIWARALPAGTSAQRAELIALTQALK 76
Query: 63 QAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQME 122
A+ ++ + +DS++ ++G+ ++NK E+ LL + +
Sbjct: 77 MAEGKKLN---VYTDSRYAFA-----------TAHVHSEGREIKNKNEILALLKALFLPK 122
Query: 123 SVKWEFVPGH-----GNSHGNMKADEMARDAA 149
+ PGH + GN AD+ AR+AA
Sbjct: 123 RLSIIHCPGHQKGNSAEARGNRMADQAAREAA 154
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 105 bits (265), Expect = 5e-30
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 12/148 (8%)
Query: 5 NHVVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
V +FT G+ N G GYG Y G + T TNN E+ AI AL
Sbjct: 3 KQVEIFTAGSALGNPGPG---GYGAILRYRGREKTFSAGYTRT---TNNRMELMAAIVAL 56
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQM 121
+ K V + +DSQ++ + + +W+ W+ GW+ AD KPV+N + Q L +GQ
Sbjct: 57 EALKEHA--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114
Query: 122 ESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ +KWE+V GH N +ADE+AR AA
Sbjct: 115 Q-IKWEWVKGHAGHPENERADELARAAA 141
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 103 bits (260), Expect = 2e-29
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGA 57
M + +FTDG+C N G GYG+ Y G ++ +T TNN E+
Sbjct: 1 MTELKLIHIFTDGSCLGNPGPG---GYGIVMNYKGHTKEMSDGFSLT---TNNRMELLAP 54
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
I AL+ K ++ + SDSQ+M + + W+ W+ GW ++ PV+N + + L
Sbjct: 55 IVALEALKEPC--KIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKA 112
Query: 118 IGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ + W +V GH N + D++AR AA
Sbjct: 113 AQLHQ-IDWRWVKGHAGHAENERCDQLARAAA 143
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 101 bits (255), Expect = 2e-28
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGA 57
P V +FTDGAC N G G+ + L+ T TNN E++ A
Sbjct: 3 PSPRKRVALFTDGACLGNPGPG---GWAALLRFHAHEKLLSGGEACT---TNNRMELKAA 56
Query: 58 IHALKQAKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
I LK K V + +DS ++ K + W+ W+ GWR A+GKPV+N++ + LL
Sbjct: 57 IEGLKALKEPC--EVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLL 114
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMARDAA 149
+ V++ FV GH N + D AR A
Sbjct: 115 AMAPHR-VRFHFVKGHTGHPENERVDREARRQA 146
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 97.6 bits (244), Expect = 6e-27
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 4 DNHVVVFTDGACPRNGKVGASAGYGV---YFGENNPLNVAGKVTGRVTNNNAEIQGAIHA 60
+ + ++TDGA N G G+G Y ++ T TNN E+ AI
Sbjct: 2 EKTITIYTDGAASGNPGKG---GWGALLMYGSSRKEISGYDPAT---TNNRMELMAAIKG 55
Query: 61 LKQAKSANIDRVCIKSDSQFMIKCV-QEWMPKWQSNGWRKADGKPVQNKEELQELLHQIG 119
L+ K RV + SDS +++ + + W+ +W NGW+ A KPV+N + QE+L
Sbjct: 56 LEALKEPA--RVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT 113
Query: 120 QMESVKWEFVPGHGNSHGNMKADEMARDAA 149
V + V GH ++ N +ADE+AR A
Sbjct: 114 LHR-VTFHKVKGHSDNPYNSRADELARLAI 142
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 93.2 bits (232), Expect = 3e-25
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 1 MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKV----TGRVTNNNAEIQG 56
MD V+TDG+ NG+ Y A + N EI
Sbjct: 1 MDDRTEYDVYTDGSY-VNGQYAW--AYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAA 57
Query: 57 AIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLH 116
A++A+K+A + ++ I D + W + W+ + + + +
Sbjct: 58 ALYAVKKASQLGV-KIRILHDYA--------GIAFWATGEWKAKNEFTQAYAKLMNQYRG 108
Query: 117 QIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG 150
+E V H + N D A+ A G
Sbjct: 109 IY------SFEKVKAHSGNEFNDYVDMKAKSALG 136
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 76.2 bits (188), Expect = 1e-18
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 6 HVVVFTDGACPRNGKVGASAGYGVYFGENN-PLNVAGKVTGRVTNNNAEIQGAIHALKQA 64
VV+ DG N A G V+ +++ L + + GR TNN AE +G I L A
Sbjct: 3 KVVIEADGGSRGNPG-PAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 61
Query: 65 KSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESV 124
+ DS+ +++ + W+ ++ + Q L Q +
Sbjct: 62 VKLGATEAAVLMDSKLVVEQMS--------GRWKVKHPDLLKLYVQAQALASQF---RRI 110
Query: 125 KWEFVPGHGNSHGNMKADEMARDAA 149
+E+VP N++ AD +A DA
Sbjct: 111 NYEWVPRARNTY----ADRLANDAM 131
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 76.0 bits (188), Expect = 1e-18
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 27/153 (17%)
Query: 5 NHVVVFTDGACPRN-GKVGASAGYGV--YFGENNPLNVAGKVTGRVTNNNAEIQGAIHAL 61
N ++++TDG N G AG GV + N L+ + G TNN AE + I AL
Sbjct: 2 NKIIIYTDGGARGNPGP----AGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRAL 57
Query: 62 KQAKSANI----DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQ 117
+ + V ++ DS+ + + ++ + L+E +
Sbjct: 58 EDLQMFGDKLVDMEVEVRMDSE--------LIVRQMQGVYKV-------KEPTLKEKFAK 102
Query: 118 IGQME-SVKWEFVPGHGNSHGNMKADEMARDAA 149
I ++ V H N +ADE+ +A
Sbjct: 103 IAHIKMERVPNLVFVHIPREKNARADELVNEAI 135
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 67.8 bits (166), Expect = 2e-15
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 30/152 (19%)
Query: 7 VVVFTDGACPRNGKVGASAGYG--VYFGENNPLNVA---GKVTGRVTNNNAEIQGAIHAL 61
++ + DG C G A +G +Y + TNN AE G I +
Sbjct: 2 IIGYFDGLC-EPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLM 60
Query: 62 KQAKSANIDRVCIKSDSQFMIKCVQ-EWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQ 120
+ I IK DSQ +IK + E+ K + + L + +
Sbjct: 61 ETMLRLGISSPIIKGDSQLVIKQMNGEYKVK----------------AKRIIPLYEKAIE 104
Query: 121 MES---VKWEFVPGHGNSHGNMKADEMARDAA 149
++ +VP N AD ++R A
Sbjct: 105 LKKKLNATLIWVPREENKE----ADRLSRVAY 132
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif,
hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1
PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A
2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Length = 142
Score = 62.2 bits (151), Expect = 3e-13
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 25/144 (17%)
Query: 7 VVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKS 66
+ D N + Y + + + TNN E +H L+ K
Sbjct: 12 ESLSVDVGSQGNPGIV---EYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKE 68
Query: 67 ANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQEL--------LHQI 118
N + I S+SQ IK W+ + + + + + + H
Sbjct: 69 RNSRKP-IYSNSQTAIK----WVKDKK---AKSTLVRNEETALIWKLVDEAEEWLNTHTY 120
Query: 119 GQMESVKWEFVPGHGNSHGNMKAD 142
+ +KW+ + G +KAD
Sbjct: 121 -ETPILKWQ-----TDKWGEIKAD 138
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 45.5 bits (108), Expect = 2e-06
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANI 69
+TDG+C R K G AGY G++ + TN AE++ AL +
Sbjct: 440 YTDGSCNRQSKEG-KAGYVTDRGKDKVKKLEQ-----TTNQQAELEAFAMALTDSGP--- 490
Query: 70 DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEEL-QELLHQIGQMESVKWEF 128
+V I DSQ+++ V +P +++ ++ +++ ++ + E++ +
Sbjct: 491 -KVNIIVDSQYVMGIVA---------------SQPTESESKIVNQIIEEMIKKEAIYVAW 534
Query: 129 VPGHGNSHGNMKADEM 144
VP H GN + D +
Sbjct: 535 VPAHKGIGGNQEVDHL 550
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 43.2 bits (102), Expect = 1e-05
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 10 FTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANI 69
+ DGA R K+G AGY G + + TN E+Q AL+ +
Sbjct: 443 YVDGAANRETKLG-KAGYVTNKGRQKVVPLTN-----TTNQKTELQAIYLALQDSGL--- 493
Query: 70 DRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEEL-QELLHQIGQMESVKWEF 128
V I +DSQ+ + +Q +P +++ EL +++ Q+ + E V +
Sbjct: 494 -EVNIVTDSQYALGIIQ---------------AQPDKSESELVNQIIEQLIKKEKVYLAW 537
Query: 129 VPGHGNSHGNMKADEM 144
VP H GN + D++
Sbjct: 538 VPAHKGIGGNEQVDKL 553
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.015
Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 41/115 (35%)
Query: 8 VVFTDG-----ACPRNGKVGASAGYGVYFGENNPLNVA---------------GKVTGR- 46
VVF G A PR ++G S YG+ NP VA GK TG
Sbjct: 1785 VVFYRGMTMQVAVPR-DELGRS-NYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 47 --VTNNNAEIQ-----GAIHA-------LKQAKSANIDRVCIKSDSQFMIKCVQE 87
+ N N E Q G + A L K ID I+ ++ V+
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID--IIELQKSLSLEEVEG 1893
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 27.8 bits (61), Expect = 1.6
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 90 PKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHG 137
K NGW ++ L+ LH++ M+S + G G G
Sbjct: 39 GKCPENGW---------DESTLELFLHELAIMDSNNFLGNCGVGEREG 77
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP:
c.68.1.13 PDB: 1vh3_A 3duv_A*
Length = 262
Score = 26.7 bits (60), Expect = 3.3
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 52 AEIQGA---IHALKQAKSANIDRVCIKSDSQ 79
A+I+G H ++A + RV I +D++
Sbjct: 22 ADIKGKPMIQHVFEKALQSGASRVIIATDNE 52
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide
biosynthesis, magnesium; HET: KDO CTP; 1.90A
{Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 52 AEIQGA---IHALKQAKSANIDRVCIKSDSQ 79
+I G +H L++A+ + +R+ + +D +
Sbjct: 38 VDINGKPMIVHVLERARESGAERIIVATDHE 68
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 26.5 bits (58), Expect = 3.8
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 90 PKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHG 137
K +GW ++ L+ LH++ M+S + G G G
Sbjct: 21 GKCPEDGW---------DESTLELFLHELAVMDSNNFLGNCGVGEREG 59
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 26.3 bits (59), Expect = 4.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 52 AEIQGA---IHALKQAKSANIDRVCIKSDSQ 79
A+I G +QA A DRV I +D +
Sbjct: 22 ADIGGKPMIQWVYEQAMQAGADRVIIATDDE 52
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB:
3dak_A*
Length = 303
Score = 26.1 bits (58), Expect = 4.5
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 22 GASAGYGVYFGENNPLN--VAGKVTG--RVTNNNAEIQGAIHALKQAKSANI 69
GA+A V P VA K + + E+ I A+ Q NI
Sbjct: 26 GATAV--VQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI 75
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 26.2 bits (58), Expect = 4.6
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 20 KVGASAGYGVYFGENNPLN--VAGKVTGRVTNNNAEIQGAIHALKQAKSANI 69
K+G + VY + VA K V ++ EI I ++Q S ++
Sbjct: 36 KLGEGSYGSVYKAIHKETGQIVAIKQV-PVESDLQEIIKEISIMQQCDSPHV 86
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 25.9 bits (58), Expect = 4.8
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 52 AEIQGA---IHALKQAKSANIDRVCIKSDSQ 79
+I G H + A + + V I +D +
Sbjct: 29 VDIAGKPMIQHVYESAIKSGAEEVVIATDDK 59
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 26.0 bits (57), Expect = 6.6
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 5/53 (9%)
Query: 22 GASAGYGVYFGENNPLN--VAGKV---TGRVTNNNAEIQGAIHALKQAKSANI 69
G V P V + +QG +H K NI
Sbjct: 36 GFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNI 88
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 25.3 bits (56), Expect = 8.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 101 DGKPVQNKEELQELLHQIGQMES-VKWE 127
G ++ + +LL Q+ S VKWE
Sbjct: 266 HGHRYRHPGHIHKLL--AQQLVSPVKWE 291
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo
sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A
3ckx_A* 3ggf_A* 2xik_A*
Length = 303
Score = 25.4 bits (56), Expect = 9.7
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 27 YG-VYFGENNPLN--VAGKVTG--RVTNNNAEIQGAIHALKQAKSANI 69
+G V+ G +N VA K+ + +IQ I L Q S +
Sbjct: 35 FGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.414
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,422,872
Number of extensions: 132179
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 34
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)