Diaphorina citri psyllid: psy3458

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAGW
ccccccEEEEEccccccccccccccEEEEECcccccEEECcccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHcc
***DNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAG*
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MDPDNHVVVFTDGACPRNGKVGASAGYGVYFGENNPLNVAGKVTGRVTNNNAEIQGAIHALKQAKSANIDRVCIKSDSQFMIKCVQEWMPKWQSNGWRKADGKPVQNKEELQELLHQIGQMESVKWEFVPGHGNSHGNMKADEMARDAAGW

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ribonuclease H Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.confidentB7LHC0
Ribonuclease H Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.confidentQ325T2
Ribonuclease H Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.confidentB0TZ91

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0043137 [BP]DNA replication, removal of RNA primerprobableGO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901576, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0044260, GO:0033567, GO:0071704, GO:0006260, GO:0006261, GO:0006401, GO:0022616, GO:0044238, GO:0009987, GO:0006725, GO:0046700, GO:0006259, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0046483, GO:0016070, GO:0044248, GO:0044270, GO:0006273, GO:0006271, GO:0044237, GO:0043170, GO:0019439
GO:0005488 [MF]bindingprobableGO:0003674
GO:0004523 [MF]ribonuclease H activityprobableGO:0016787, GO:0003824, GO:0004518, GO:0004519, GO:0004540, GO:0004521, GO:0016788, GO:0016893, GO:0016891, GO:0003674
GO:0044424 [CC]intracellular partprobableGO:0005575, GO:0044464, GO:0005623, GO:0005622

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.1.-.-Acting on ester bonds.probable
3.1.26.-Endoribonucleases producing 5'-phosphomonoesters.probable
3.1.26.4Ribonuclease H.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2QKB, chain A
Confidence level:very confident
Coverage over the Query: 4-150
View the alignment between query and template
View the model in PyMOL