BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3459
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/94 (85%), Positives = 88/94 (93%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EK
Sbjct: 1 MSFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
RKTINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 61 RKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 68/77 (88%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I++ Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LG
Sbjct: 18 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 77
Query: 182 FDSYVEPLKIYLQKYRE 198
FDSYVEPLK+YLQK+RE
Sbjct: 78 FDSYVEPLKLYLQKFRE 94
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 44 FISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 87/92 (94%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 61
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 62 TINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 68/77 (88%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I++ Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LG
Sbjct: 17 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76
Query: 182 FDSYVEPLKIYLQKYRE 198
FDSYVEPLK+YLQK+RE
Sbjct: 77 FDSYVEPLKLYLQKFRE 93
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 43 FISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 85/92 (92%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
++EQDR+LPIANVA+IMK A+PE+ KIAK+A+EC+QECVSEFISFITSEAS++C EKRK
Sbjct: 1 MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRK 60
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
T+NGEDILFAM++LGF++Y E LKIYL KYRE
Sbjct: 61 TVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
+N IAK+A+EC+QECVSEFISFITSEAS++C EKRKT+NGEDILFAM++LGF++Y E
Sbjct: 23 ENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEA 82
Query: 189 LKIYLQKYRE 198
LKIYL KYRE
Sbjct: 83 LKIYLSKYRE 92
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 46/51 (90%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISFITSEAS++C EKRKT+NGEDILFAM++LGF++Y E LKIYL KYRE
Sbjct: 42 FISFITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 64
+ D +P A + K++K+ +P + ++A DARE V C +EFI I+SEA++ C+ ++KTI
Sbjct: 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 69
Query: 65 NGEDILFAMSALGFDSYVEPLKIYLQ 90
+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 70 SPEHVIQALESLGFGSYISEVKEVLQ 95
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 31 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 90
Query: 190 KIYLQ 194
K LQ
Sbjct: 91 KEVLQ 95
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 49 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 95
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
R +D LP A + +++K+A+PES ++K+AR + S F F+TS ++ H + KT
Sbjct: 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT 63
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYR 93
I +DIL ++ L F+S+V L L+ YR
Sbjct: 64 ITAKDILQTLTELDFESFVPSLTQDLEVYR 93
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
G ++++ ++ +++K+AR + S F F+TS ++ H + KTI +DIL ++
Sbjct: 16 GRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE 75
Query: 180 LGFDSYVEPLKIYLQKYR 197
L F+S+V L L+ YR
Sbjct: 76 LDFESFVPSLTQDLEVYR 93
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYR 254
F F+TS ++ H + KTI +DIL ++ L F+S+V L L+ YR
Sbjct: 44 FAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYR 93
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 69
Score = 34.3 bits (77), Expect = 0.085, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 4 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
Query: 70 LFA 72
A
Sbjct: 62 ELA 64
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFA 176
+N E ++ DAR + + + E I SEA RKTI EDI A
Sbjct: 14 KNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
Methanothermus Fervidus
Length = 69
Score = 34.3 bits (77), Expect = 0.094, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 3 LPIAPIGRIIKDAGAE--RVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 70 LFAM 73
A+
Sbjct: 61 ELAV 64
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 3 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
Query: 70 LFA 72
A
Sbjct: 61 ELA 63
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFA 176
+N E ++ DAR + + + E I SEA RKTI EDI A
Sbjct: 13 KNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63
>pdb|1UF2|P Chain P, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|C Chain C, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|D Chain D, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|Q Chain Q, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|E Chain E, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|F Chain F, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|R Chain R, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|G Chain G, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|H Chain H, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|S Chain S, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|I Chain I, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|J Chain J, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|T Chain T, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 421
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 103 NCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHL 162
N + + ++ D F + + Q + + D R +Q + F+SFITS +DRC
Sbjct: 24 NGDTFSGLTTGD-FNALSNMFTQLSVSSAGYVSDPRVPLQTMSNMFVSFITS--TDRCGY 80
Query: 163 EKRKTINGEDILFAMSALGFDSYVEP 188
RKT D +S +Y+ P
Sbjct: 81 MLRKTWFNSDTKPTVSDDFITTYIRP 106
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 3 LPIAPIGRIIKDAGAE--RVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 70 LFAM 73
A+
Sbjct: 61 ELAV 64
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+A + K+MK A PE I+ +A + FI+ +T A KR+T+ DI
Sbjct: 42 LPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDI 100
Query: 70 LFAMS 74
A+S
Sbjct: 101 AAALS 105
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA V ++++KA E ++++ A + + E + E+ I +A + RKT+ EDI
Sbjct: 7 LPIAPVDRLIRKAGAE--RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 64
Query: 70 LFAMSA 75
A+ +
Sbjct: 65 KLAIKS 70
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 92 YREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISF 151
+++A KGE++ E+ + +DVF+ + I+ + G+ + A+ RE ++ + I+F
Sbjct: 71 FKDAKKGERASVDELRKIFGTDDVFEIARKIILE--GEVQITAEQRREMLEAKRKQIINF 128
Query: 152 ITSEASD 158
I+ D
Sbjct: 129 ISRNTID 135
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
Length = 111
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 29 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 88
+ +DA + V++C + I+S+ RKT+ D+ M G + PL +
Sbjct: 25 VTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84
Query: 89 LQK-----YRE-----ATKGEKSVNCE 105
+++ YR+ A G K + C+
Sbjct: 85 VERHLPLEYRKLLIPIAVSGNKVIPCK 111
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
+ +DA + V++C + I+S+ RKT+ D+ M G + PL +
Sbjct: 25 VTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84
Query: 193 LQKY 196
++++
Sbjct: 85 VERH 88
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A + +I ++ I E ++++DA++ + + V ++ + A +KT+ E
Sbjct: 5 LPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLXEEH- 62
Query: 70 LFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQ 129
+ AL VE ++ Y + E++ +V + + +G
Sbjct: 63 ---LKALADVLXVEGVEDY--------------DGELFGRATVRRILKRAGI-------- 97
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178
E + DA + + + + +A++ + RKT+ GED+ A++
Sbjct: 98 -ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 92 YREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISF 151
+++A KGE++ E+ + +DVF+ + I+ + G+ + A+ RE ++ + I+F
Sbjct: 55 FKDAKKGERASVDELRKIFGTDDVFEIARKIILE--GEVQITAEQRREXLEAKRKQIINF 112
Query: 152 ITSEASD 158
I+ D
Sbjct: 113 ISRNTID 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,874,274
Number of Sequences: 62578
Number of extensions: 305420
Number of successful extensions: 964
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 42
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)