BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3459
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 94/105 (89%)
Query: 2 PLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKR 61
P REQD +LPIANVA+IMK +IP SGKIAKDA+ECVQECVSEFISFITSEAS+RCH EKR
Sbjct: 52 PYREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 111
Query: 62 KTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
KTINGEDILFAMS LGFDSYVEPLK YLQKYRE+ KGEK +N V
Sbjct: 112 KTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGINATV 156
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 4/124 (3%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK Y
Sbjct: 79 IAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQY 138
Query: 193 LQKYREATKGEKFISFITSEASDRCHLE-KRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
LQKYRE+ KGEK I+ +D E ++ +G A S + D + + +Y
Sbjct: 139 LQKYRESMKGEKGINATVVTTTDAIPEELTEESFSGP---LATSIITADGQQQNVMVYTT 195
Query: 252 KYRE 255
Y++
Sbjct: 196 AYQQ 199
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK YLQKYRE+ KGEK +
Sbjct: 93 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGI 152
Query: 264 NCEV 267
N V
Sbjct: 153 NATV 156
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAV 155
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 74 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 133
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 134 LKLYLQKFREAMKGEKGIG 152
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151
Query: 264 NCEV 267
V
Sbjct: 152 GGAV 155
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAV 155
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 74 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 133
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 134 LKLYLQKFREAMKGEKGIG 152
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151
Query: 264 NCEV 267
V
Sbjct: 152 GGAV 155
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAV 155
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 74 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 133
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 134 LKLYLQKFREAMKGEKGIG 152
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151
Query: 264 NCEV 267
V
Sbjct: 152 GGAV 155
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAV 155
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 74 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 133
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 134 LKLYLQKFREAMKGEKGIG 152
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151
Query: 264 NCEV 267
V
Sbjct: 152 GGAV 155
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 111
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 112 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAV 155
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 74 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 133
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 134 LKLYLQKFREAMKGEKGIG 152
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151
Query: 264 NCEV 267
V
Sbjct: 152 GGAV 155
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 94/104 (90%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 50 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 109
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106
TINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK + V
Sbjct: 110 TINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTV 153
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 71/79 (89%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 72 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 131
Query: 189 LKIYLQKYREATKGEKFIS 207
LK+YLQK+REA KGEK I
Sbjct: 132 LKLYLQKFREAMKGEKGIG 150
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 90 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 149
Query: 264 NCEV 267
V
Sbjct: 150 GGTV 153
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 86/92 (93%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRFLPIAN+++IMKKAIP +GKIAKDA+E VQECVSEFISFITSEASD+C EKRK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TING+D+L+AM+ LGF+ Y+EPLK+YLQKYRE
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYRE 120
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 70/86 (81%), Gaps = 4/86 (4%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N IAKDA+E VQECVSEFISFITSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPL
Sbjct: 52 NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 111
Query: 190 KIYLQKYREATKGEKFISFITSEASD 215
K+YLQKYRE K +T+++SD
Sbjct: 112 KVYLQKYREMEGDSK----LTAKSSD 133
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 47/51 (92%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISFITSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPLK+YLQKYRE
Sbjct: 70 FISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYRE 120
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 93/112 (83%), Gaps = 8/112 (7%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRFLPIAN+++IMKKAIP +GKIAKDA+E VQECVSEFISFITSEASD+C EKRK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE--------ATKGEKSVNCEV 106
TING+D+L+AM+ LGF+ Y+EPLK+YLQKYRE A G+ SV +V
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDV 147
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 4/86 (4%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N IAKDA+E VQECVSEFISFITSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPL
Sbjct: 59 NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 118
Query: 190 KIYLQKYREATKGEKFISFITSEASD 215
K+YLQKYRE K +T++A D
Sbjct: 119 KVYLQKYREMEGDSK----LTAKAGD 140
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 8/71 (11%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE--------A 256
FISFITSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPLK+YLQKYRE A
Sbjct: 77 FISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTA 136
Query: 257 TKGEKSVNCEV 267
G+ SV +V
Sbjct: 137 KAGDGSVKKDV 147
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 84/92 (91%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRFLPIAN+++IMKKA+P +GKIAKDA+E +QECVSEFISF+TSEASD+C EKRK
Sbjct: 32 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 91
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TINGED+LFAM LGF+ YV+PLKIYL KYRE
Sbjct: 92 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 123
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 71/94 (75%), Gaps = 4/94 (4%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+++ N IAKDA+E +QECVSEFISF+TSEASD+C EKRKTINGED+LFAM LG
Sbjct: 47 IMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLG 106
Query: 182 FDSYVEPLKIYLQKYREATKGEKFISFITSEASD 215
F+ YV+PLKIYL KYRE K ++S+A D
Sbjct: 107 FEEYVDPLKIYLHKYREVIGDSK----LSSKAGD 136
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 45/51 (88%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISF+TSEASD+C EKRKTINGED+LFAM LGF+ YV+PLKIYL KYRE
Sbjct: 73 FISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 123
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
REQDRFLPIANV++IMKKA+P + KI+KDA+E VQECVSEFISFIT EASD+C EKRKT
Sbjct: 20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNC 104
ING+D+L+AM+ LGF+ YVEPLK+YLQKYRE +GEK+
Sbjct: 80 INGDDLLWAMTTLGFEDYVEPLKVYLQKYREV-EGEKTTTA 119
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N I+KDA+E VQECVSEFISFIT EASD+C EKRKTING+D+L+AM+ LGF+ YVEPL
Sbjct: 42 NAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPL 101
Query: 190 KIYLQKYREATKGEK 204
K+YLQKYRE +GEK
Sbjct: 102 KVYLQKYREV-EGEK 115
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVN 264
FISFIT EASD+C EKRKTING+D+L+AM+ LGF+ YVEPLK+YLQKYRE +GEK+
Sbjct: 60 FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREV-EGEKTTT 118
Query: 265 C 265
Sbjct: 119 A 119
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 87/99 (87%), Gaps = 3/99 (3%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRFLPIAN+++IMK+ +P +GKIAKDA+E VQECVSEFISF+TSEASD+C EKRK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKG 98
TING+D+L+AM+ LGF+ Y+EPLK+YL +YRE TKG
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKG 126
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 3/76 (3%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N IAKDA+E VQECVSEFISF+TSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPL
Sbjct: 51 NGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPL 110
Query: 190 KIYLQKYREA---TKG 202
K+YL +YRE TKG
Sbjct: 111 KVYLMRYREMEGDTKG 126
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKG 259
FISF+TSEASD+C EKRKTING+D+L+AM+ LGF+ Y+EPLK+YL +YRE TKG
Sbjct: 69 FISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKG 126
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 84/92 (91%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDR+LPIAN+++IMKKA+P +GKI KDA++ VQECVSEFISFITSEASD+C EKRK
Sbjct: 19 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
T+NG+D+L+AM+ LGF+ Y+EPLKIYL +YRE
Sbjct: 79 TVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+++ N I KDA++ VQECVSEFISFITSEASD+C EKRKT+NG+D+L+AM+ LG
Sbjct: 34 IMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLG 93
Query: 182 FDSYVEPLKIYLQKYREATKGEKFISFITSEASDR 216
F+ Y+EPLKIYL +YRE +G+ S + + S+R
Sbjct: 94 FEDYLEPLKIYLARYRE-LEGDNKGSGKSGDGSNR 127
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISFITSEASD+C EKRKT+NG+D+L+AM+ LGF+ Y+EPLKIYL +YRE
Sbjct: 60 FISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 84/98 (85%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
REQDR+LPIAN+ +IMKKA+P + K+AKDA+E VQ+CVSEFISFITSEASD+C EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 101
INGEDI+ AM +LGF++YVEPLK+YL KYRE K +
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNN 144
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 66/81 (81%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+++ N +AKDA+E VQ+CVSEFISFITSEASD+C EKRKTINGEDI+ AM +LG
Sbjct: 61 IMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLG 120
Query: 182 FDSYVEPLKIYLQKYREATKG 202
F++YVEPLK+YL KYRE K
Sbjct: 121 FENYVEPLKVYLLKYRETEKN 141
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 262
FISFITSEASD+C EKRKTINGEDI+ AM +LGF++YVEPLK+YL KYRE K +
Sbjct: 87 FISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNN 144
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 87/99 (87%), Gaps = 3/99 (3%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRFLPIAN+++IMK+ +P +GKIAKDA+E +QECVSEFISF+TSEASD+C EKRK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKG 98
TING+D+L+AM+ LGF+ Y++PLK+YL +YRE TKG
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKG 125
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 3/76 (3%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N IAKDA+E +QECVSEFISF+TSEASD+C EKRKTING+D+L+AM+ LGF+ Y++PL
Sbjct: 50 NGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 109
Query: 190 KIYLQKYREA---TKG 202
K+YL +YRE TKG
Sbjct: 110 KVYLMRYREMEGDTKG 125
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKG 259
FISF+TSEASD+C EKRKTING+D+L+AM+ LGF+ Y++PLK+YL +YRE TKG
Sbjct: 68 FISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKG 125
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 92/110 (83%), Gaps = 3/110 (2%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
+EQDRFLPIAN+ +IM++A+PE+GKIAKD++E VQECVSEFISFITSEASD+C EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKGEKSVNCEVYQEI 110
ING+D++++M LGF+ YVEPLK+YL+ YRE TKG ++ V +++
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDV 130
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 3/88 (3%)
Query: 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
G I+ + +N IAKD++E VQECVSEFISFITSEASD+C EKRKTING+D++++M
Sbjct: 33 GRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGT 92
Query: 180 LGFDSYVEPLKIYLQKYREA---TKGEK 204
LGF+ YVEPLK+YL+ YRE TKG +
Sbjct: 93 LGFEDYVEPLKLYLRLYRETEGDTKGSR 120
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 3/70 (4%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREA---TKGEK 261
FISFITSEASD+C EKRKTING+D++++M LGF+ YVEPLK+YL+ YRE TKG +
Sbjct: 61 FISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSR 120
Query: 262 SVNCEVYQEI 271
+ V +++
Sbjct: 121 ASELPVKKDV 130
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 88/98 (89%), Gaps = 1/98 (1%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
REQDRFLPIANV++IMKKA+P + KI+KDA+E +QECVSEFISF+T EASD+C EKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 101
ING+D+L+AM+ LGF+ YVEPLK+YLQ++RE +GE++
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFRE-IEGERT 122
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 65/77 (84%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+++ N I+KDA+E +QECVSEFISF+T EASD+C EKRKTING+D+L+AM+ LG
Sbjct: 40 IMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLG 99
Query: 182 FDSYVEPLKIYLQKYRE 198
F+ YVEPLK+YLQ++RE
Sbjct: 100 FEDYVEPLKVYLQRFRE 116
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 262
FISF+T EASD+C EKRKTING+D+L+AM+ LGF+ YVEPLK+YLQ++RE +GE++
Sbjct: 66 FISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE-IEGERT 122
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
+EQDRFLPIANV +IMKK +P +GKI+KDA+E VQECVSEFISF+T EASD+C EKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
ING+DI++A++ LGF+ YV PLK+YL KYR+ T+GEK
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRD-TEGEK 130
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
G I+++ N I+KDA+E VQECVSEFISF+T EASD+C EKRKTING+DI++A++
Sbjct: 47 GRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 106
Query: 180 LGFDSYVEPLKIYLQKYREATKGEKFIS 207
LGF+ YV PLK+YL KYR+ T+GEK S
Sbjct: 107 LGFEDYVAPLKVYLCKYRD-TEGEKVNS 133
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 49/57 (85%), Gaps = 1/57 (1%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
FISF+T EASD+C EKRKTING+DI++A++ LGF+ YV PLK+YL KYR+ T+GEK
Sbjct: 75 FISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRD-TEGEK 130
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 79/92 (85%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
LREQDR+LPI NVA++MK +P S K++KDA+EC+QECVSE ISF+TSEASDRC +KRK
Sbjct: 35 LREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRK 94
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TINGEDIL ++ ALGF++Y E LKIYL KYR+
Sbjct: 95 TINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 58/66 (87%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
++KDA+EC+QECVSE ISF+TSEASDRC +KRKTINGEDIL ++ ALGF++Y E LKIY
Sbjct: 61 VSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIY 120
Query: 193 LQKYRE 198
L KYR+
Sbjct: 121 LAKYRQ 126
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 43/51 (84%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
ISF+TSEASDRC +KRKTINGEDIL ++ ALGF++Y E LKIYL KYR+
Sbjct: 76 LISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 94/126 (74%), Gaps = 7/126 (5%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+REQDRF+PIANV +IM++ +P KI+ D++E +QECVSE+ISFIT EA++RC E+RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTI 122
TI ED+L+AMS LGFD Y+EPL +YL +YRE +GE+ V+C S V ++G +
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYRE-LEGERGVSC------SAGSVSMTNGLV 168
Query: 123 LEQQNG 128
+++ NG
Sbjct: 169 VKRPNG 174
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
I+ D++E +QECVSE+ISFIT EA++RC E+RKTI ED+L+AMS LGFD Y+EPL +Y
Sbjct: 82 ISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLY 141
Query: 193 LQKYREATKGEKFIS 207
L +YRE +GE+ +S
Sbjct: 142 LHRYRE-LEGERGVS 155
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVN 264
+ISFIT EA++RC E+RKTI ED+L+AMS LGFD Y+EPL +YL +YRE +GE+ V+
Sbjct: 97 YISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRE-LEGERGVS 155
Query: 265 C 265
C
Sbjct: 156 C 156
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 77/92 (83%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
L EQDR+LPI NVA++MK +P + K++KDA+EC+QECVSEFISF+TSEA DRC KRK
Sbjct: 20 LAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRK 79
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TINGEDIL ++ ALGF++Y E LKIYL KYR+
Sbjct: 80 TINGEDILLSLHALGFENYAEVLKIYLAKYRQ 111
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 57/66 (86%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
++KDA+EC+QECVSEFISF+TSEA DRC KRKTINGEDIL ++ ALGF++Y E LKIY
Sbjct: 46 VSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIY 105
Query: 193 LQKYRE 198
L KYR+
Sbjct: 106 LAKYRQ 111
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISF+TSEA DRC KRKTINGEDIL ++ ALGF++Y E LKIYL KYR+
Sbjct: 61 FISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQ 111
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 79/100 (79%), Gaps = 1/100 (1%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M ++EQDR LPIANV +IMK +P + K++K+A+E +QECVSEFISF+T EASD+CH EK
Sbjct: 47 MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEK 106
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+NG+DI +AM+ LGFD Y LK YL +YR +GEK
Sbjct: 107 RKTVNGDDICWAMANLGFDDYAAQLKKYLHRYR-VLEGEK 145
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
G I++ N ++K+A+E +QECVSEFISF+T EASD+CH EKRKT+NG+DI +AM+
Sbjct: 62 GRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMAN 121
Query: 180 LGFDSYVEPLKIYLQKYREATKGEK 204
LGFD Y LK YL +YR +GEK
Sbjct: 122 LGFDDYAAQLKKYLHRYR-VLEGEK 145
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
FISF+T EASD+CH EKRKT+NG+DI +AM+ LGFD Y LK YL +YR +GEK
Sbjct: 90 FISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYR-VLEGEK 145
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 76/91 (83%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
REQD+++PIANV +IM+K +P KI+ DA+E +QECVSE+ISF+T EA++RC E+RKT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKT 117
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
I EDIL+AMS LGFD+YV+PL +++ +YRE
Sbjct: 118 ITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 56/66 (84%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
I+ DA+E +QECVSE+ISF+T EA++RC E+RKTI EDIL+AMS LGFD+YV+PL ++
Sbjct: 83 ISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVF 142
Query: 193 LQKYRE 198
+ +YRE
Sbjct: 143 INRYRE 148
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 43/51 (84%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
+ISF+T EA++RC E+RKTI EDIL+AMS LGFD+YV+PL +++ +YRE
Sbjct: 98 YISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGED 68
LPIANVA+IMK A+PE+ KI+K+A++CVQ+CVSEFISF+T EAS++C EKRKTI GED
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 69 ILFAMSALGFDSYVEPLKIYLQKYRE 94
+L A++ LGF++Y E LKI L KYRE
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYRE 96
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 61/77 (79%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I++ +N I+K+A++CVQ+CVSEFISF+T EAS++C EKRKTI GED+L A++ LG
Sbjct: 20 IMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLG 79
Query: 182 FDSYVEPLKIYLQKYRE 198
F++Y E LKI L KYRE
Sbjct: 80 FENYAEVLKISLTKYRE 96
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
FISF+T EAS++C EKRKTI GED+L A++ LGF++Y E LKI L KYRE
Sbjct: 46 FISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYRE 96
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 63/70 (90%)
Query: 37 VQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREAT 96
VQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 97 KGEKSVNCEV 106
KGEK + V
Sbjct: 61 KGEKGIGGTV 70
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/67 (88%), Positives = 62/67 (92%)
Query: 141 VQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREAT 200
VQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 201 KGEKFIS 207
KGEK I
Sbjct: 61 KGEKGIG 67
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 204 KFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSV 263
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+REA KGEK +
Sbjct: 7 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 66
Query: 264 NCEV 267
V
Sbjct: 67 GGTV 70
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis
thaliana GN=NFYB4 PE=1 SV=1
Length = 139
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 74/93 (79%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
+ ++DR LPIANV ++MK+ +P + KI+K+A++ VQEC +EFISF+T EAS++CH E RK
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRK 60
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREA 95
T+NG+DI +A+S LG D+Y + + +L KYREA
Sbjct: 61 TVNGDDIWWALSTLGLDNYADAVGRHLHKYREA 93
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 60/80 (75%)
Query: 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
G +++Q N I+K+A++ VQEC +EFISF+T EAS++CH E RKT+NG+DI +A+S
Sbjct: 14 GRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALST 73
Query: 180 LGFDSYVEPLKIYLQKYREA 199
LG D+Y + + +L KYREA
Sbjct: 74 LGLDNYADAVGRHLHKYREA 93
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREA 256
FISF+T EAS++CH E RKT+NG+DI +A+S LG D+Y + + +L KYREA
Sbjct: 42 FISFVTCEASEKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREA 93
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+AN+ +++KK +P KI A+ +C EF+ F+ EAS++ E R+T+ ED
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 70 LFAMSALGFDSYVEPLKIYLQKYRE 94
L + LGFD YV+P+ Y+ YRE
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYRE 118
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
I A+ +C EF+ F+ EAS++ E R+T+ ED L + LGFD YV+P+ Y
Sbjct: 53 IGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAY 112
Query: 193 LQKYRE 198
+ YRE
Sbjct: 113 IHGYRE 118
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
F+ F+ EAS++ E R+T+ ED L + LGFD YV+P+ Y+ YRE
Sbjct: 68 FVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYRE 118
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +I+K+A+P+ I+K+AR + S F+ + TS A++ K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
I+K+AR + S F+ + TS A++ KRKT+N D+L AM + F +V PLK
Sbjct: 28 NISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKE 87
Query: 192 YLQKYREATKGEK 204
L+ YR KG+K
Sbjct: 88 ALEAYRREQKGKK 100
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
F+ + TS A++ KRKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 44 FVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +I+K+A+P+ I+K+AR + S F+ + TS A++ K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
I+K+AR + S F+ + TS A++ KRKT+N D+L AM + F +V PLK
Sbjct: 28 NISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKE 87
Query: 192 YLQKYREATKGEK 204
L+ YR KG+K
Sbjct: 88 ALEAYRREQKGKK 100
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
F+ + TS A++ KRKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 44 FVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +I+K+A+P+ I+K+AR + S F+ + TS A++ K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
I+K+AR + S F+ + TS A++ KRKT+N D+L AM + F +V PLK
Sbjct: 28 NISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKE 87
Query: 192 YLQKYREATKGEK 204
L+ YR KG+K
Sbjct: 88 ALEAYRREQKGKK 100
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
F+ + TS A++ KRKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 44 FVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +I+K+A+P+ I+K+AR + S F+ + TS A++ K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
I+K+AR + S F+ + TS A++ KRKT+N D+L AM + F +V PLK
Sbjct: 28 NISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKE 87
Query: 192 YLQKYREATKGEK 204
L+ YR KG+K
Sbjct: 88 ALEAYRREQKGKK 100
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
F+ + TS A++ KRKT+N D+L AM + F +V PLK L+ YR KG+K
Sbjct: 44 FVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +I+K+A+P+ I+K+AR + S F+ + TS A++ K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
RKT+N D+L AM + F ++ PLK L+ YR KG+K
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKK 100
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
I+K+AR + S F+ + TS A++ KRKT+N D+L AM + F ++ PLK
Sbjct: 28 NISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKE 87
Query: 192 YLQKYREATKGEK 204
L+ YR KG+K
Sbjct: 88 ALEAYRRDEKGKK 100
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 261
F+ + TS A++ KRKT+N D+L AM + F ++ PLK L+ YR KG+K
Sbjct: 44 FVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKK 100
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 6 QDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTIN 65
+D LP A + KI+K+ +P ++A+DA++ + EC EFI+ ++SE++D C+ E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 66 GEDILFAMSALGFDSYVE 83
E +L A+ LGF Y+E
Sbjct: 72 PEHVLKALQVLGFGEYIE 89
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 187
+A+DA++ + EC EFI+ ++SE++D C+ E ++TI E +L A+ LGF Y+E
Sbjct: 35 VARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIE 89
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 244
FI+ ++SE++D C+ E ++TI E +L A+ LGF Y+E
Sbjct: 50 FINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIE 89
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 64
+ D +P A + K++K+ +P + ++A DARE V C +EFI I+SEA++ C+ ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 65 NGEDILFAMSALGFDSYVEPLKIYLQ 90
+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQ 92
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 28 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 87
Query: 190 KIYLQ 194
K LQ
Sbjct: 88 KEVLQ 92
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 46 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 64
+ D +P A + K++K+ +P + ++A DARE V C +EFI I+SEA++ C+ ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 65 NGEDILFAMSALGFDSYVEPLKIYLQ 90
+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQ 92
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 28 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 87
Query: 190 KIYLQ 194
K LQ
Sbjct: 88 KEVLQ 92
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 46 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 64
+ D +P A + K++K+ +P + ++A DARE V C +EFI I+SEA++ C+ ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 65 NGEDILFAMSALGFDSYVEPLKIYLQ 90
+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQ 92
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 28 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 87
Query: 190 KIYLQ 194
K LQ
Sbjct: 88 KEVLQ 92
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 46 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 64
+ D +P A + K++K+ +P + ++A DARE V C +EFI I+SEA++ C+ ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 65 NGEDILFAMSALGFDSYVEPLKIYLQ 90
+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQ 92
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 28 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 87
Query: 190 KIYLQ 194
K LQ
Sbjct: 88 KEVLQ 92
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQ 251
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ
Sbjct: 46 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 2 PLREQDRF-LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
P E D LP A++ KI+K+ +P + ++A ++RE + C SEFI I+SEA++ C++
Sbjct: 11 PSAEDDELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRN 69
Query: 61 RKTINGEDILFAMSALGFDSY 81
+KTIN E +L A+ LGF Y
Sbjct: 70 KKTINAEHVLEALERLGFHDY 90
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185
+A ++RE + C SEFI I+SEA++ C++ +KTIN E +L A+ LGF Y
Sbjct: 38 VANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDY 90
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 242
FI I+SEA++ C++ +KTIN E +L A+ LGF Y
Sbjct: 53 FIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDY 90
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
+E + LP A V+K++K+ +P+ K + + R+ + EC EFI I+SEA+D C E+++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYR 93
I E ++ A++ LGF Y + + K++
Sbjct: 67 IAAEHVIKALTELGFSDYTQKVSDVYDKHK 96
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q+ + + R+ + EC EFI I+SEA+D C E+++TI E ++ A++ LGF Y +
Sbjct: 28 QDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQK 87
Query: 189 LKIYLQKYR 197
+ K++
Sbjct: 88 VSDVYDKHK 96
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A V K++ +P K+AR+ + EC EFI ++SEA++ C E +KTI E I
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 70 LFAMSALGFDSYV 82
+ A+ L F Y+
Sbjct: 72 IKALENLEFKEYI 84
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYV-EPLK 190
T K+AR+ + EC EFI ++SEA++ C E +KTI E I+ A+ L F Y+ E L+
Sbjct: 30 TFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALE 89
Query: 191 IYL-----QKYREATKGEKF 205
+ QK RE K KF
Sbjct: 90 VAAEHKEQQKNRE-KKSSKF 108
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYV 243
FI ++SEA++ C E +KTI E I+ A+ L F Y+
Sbjct: 46 FIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYI 84
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTING 66
D LP + + +++K +PE + K+A + + + F+SF+TS + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 67 EDILFAMSALGFDSYVEPLKIYLQKYREATK 97
+D+L A+ + + + + LK +L+ Y A K
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAYELALK 104
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
+ K+A + + + F+SF+TS + + RK + +D+L A+ + + + + LK +
Sbjct: 36 VQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKH 95
Query: 193 LQKYREATKGEKFISFITSEASDRCHLEKRKTINGED 229
L+ Y A K ++ S+ +R K+ I+ D
Sbjct: 96 LEAYELALKEKRLKLPNVSDVDNR----KKAKIDAHD 128
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATK 258
F+SF+TS + + RK + +D+L A+ + + + + LK +L+ Y A K
Sbjct: 51 FVSFLTSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAYELALK 104
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A V K++ + + + KDARE + EFI ++S AS+ E +KTI E +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 70 LFAMSALGFDSYVEPLKIYLQKYREATK 97
+ A+ L ++ ++ L+ L ++ + K
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFKGSQK 97
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q+ KDARE + EFI ++S AS+ E +KTI E ++ A+ L ++ ++
Sbjct: 25 QDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFIPF 84
Query: 189 LKIYLQKYREATK 201
L+ L ++ + K
Sbjct: 85 LEEILLNFKGSQK 97
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A V +I+K ++PE AK++R + + +I ++T+ + D R TI+ +D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 70 LFAMSALGFDSYVEPLKIYLQKYR 93
A+ + F+++ L+ YL +
Sbjct: 67 FQAIEEIDFENFKPQLEEYLAALK 90
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTING 66
D P + + + K+ +P+ I+KDA +Q + F+S++ S + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 67 EDILFAMSALGFDSYV 82
+D+ A+ + +V
Sbjct: 94 QDVFVALKDVDLAQFV 109
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 104 CEVYQEISVEDVFQSSGTILEQQNGQNET------IAKDARECVQECVSEFISFITSEAS 157
+ Q+ S++D+ TI +N ET I+KDA +Q + F+S++ S +
Sbjct: 24 IQAKQKYSIDDLLYPKSTI---KNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGN 80
Query: 158 DRCHLEKRKTINGEDILFAMSALGFDSYV 186
RK I +D+ A+ + +V
Sbjct: 81 ASAEAGGRKKITPQDVFVALKDVDLAQFV 109
>sp|Q6CJD7|DPB4_KLULA DNA polymerase epsilon subunit D OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB4 PE=3 SV=1
Length = 216
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKI 191
T++KDA +Q + F++ + A RK+ N +DI+ A+ LG + L
Sbjct: 60 TVSKDAALAMQRSATVFVNHLLMFARMNAKDSNRKSCNDQDIMAALDTLGLGALESILTG 119
Query: 192 YLQKYREA 199
+Q+Y+EA
Sbjct: 120 KMQEYQEA 127
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 29 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 88
++KDA +Q + F++ + A RK+ N +DI+ A+ LG + L
Sbjct: 61 VSKDAALAMQRSATVFVNHLLMFARMNAKDSNRKSCNDQDIMAALDTLGLGALESILTGK 120
Query: 89 LQKYREA--TKGEKSVNCEV 106
+Q+Y+EA K + VN V
Sbjct: 121 MQEYQEAILWKKQNKVNNAV 140
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA V ++++KA E ++++DA + + E + E+ ++ +A D RKT+ EDI
Sbjct: 4 LPIAPVDRLIRKAGAE--RVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 70 LFAMSA 75
A+ A
Sbjct: 62 KLAIKA 67
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 6 QDRFLPIANVAKIMKKAIPESGK---IAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
QD P + + + ++ +SGK I KDA +Q + F++ + A + + +K
Sbjct: 29 QDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHLLLFAREIAKSQDKK 88
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 100
+ + +D+L A+ +G + P++ L +Y+ A + K
Sbjct: 89 SCSVDDVLSALDHIGHSALKGPVRDKLDEYQAAVEQRK 126
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 110 ISVEDVFQSSGTILE------QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLE 163
I+++D+ TI+ QQ+G+ I KDA +Q + F++ + A + +
Sbjct: 26 ITIQDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHLLLFAREIAKSQ 85
Query: 164 KRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEK 204
+K+ + +D+L A+ +G + P++ L +Y+ A + K
Sbjct: 86 DKKSCSVDDVLSALDHIGHSALKGPVRDKLDEYQAAVEQRK 126
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+A +I+KKA E ++++ A E + E V E I EA + KRKT+ EDI
Sbjct: 4 LPVAPFERILKKAGAE--RVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 70 LFAM 73
A+
Sbjct: 62 KLAL 65
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 9 FLPIANVAKIMKKAIPESGK-------IAKDARECVQECVSEFISFITSEASDRCHLEKR 61
P A V K+ K + S +AKD+ +Q + F+S + +A E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 62 KTINGEDILFAMSALGFDSYVEPLKIYL 89
KTIN +DIL A+ F ++ +K L
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKL 117
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +AKD+ +Q + F+S + +A E RKTIN +DIL A+ F ++ +
Sbjct: 54 NMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGRKTINAQDILSALEKAEFSGFIPEV 113
Query: 190 KIYLQKY------REATKGEKFISFITSEASDRCHLEKRKTINGEDIL 231
K L + R+ K +K + E D KR N E I+
Sbjct: 114 KQKLSVFESNIALRKKHKADKKVP--KPEGVDASPSSKRLKDNDEQII 159
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+A +I+KKA E ++++ A E + E V E I EA + KRKT+ EDI
Sbjct: 4 LPVAPFERILKKAGAE--RVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 70 LFAM 73
A+
Sbjct: 62 KLAL 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,276,001
Number of Sequences: 539616
Number of extensions: 3909842
Number of successful extensions: 10234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 10064
Number of HSP's gapped (non-prelim): 216
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)