Query psy3459
Match_columns 296
No_of_seqs 266 out of 892
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:15:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f1e_A Histone fold protein; a 100.0 5.5E-33 1.9E-37 239.5 12.8 140 9-179 4-146 (154)
2 1jfi_B DR1 protein, transcript 100.0 2.3E-29 7.9E-34 221.4 9.6 130 4-135 10-149 (179)
3 1jfi_B DR1 protein, transcript 99.9 1.1E-27 3.8E-32 210.7 7.5 116 118-238 20-135 (179)
4 2byk_B Chrac-14; nucleosome sl 99.9 4.5E-27 1.5E-31 197.0 10.8 102 1-102 1-102 (128)
5 1n1j_A NF-YB; histone-like PAI 99.9 1.9E-25 6.5E-30 176.9 10.1 92 3-94 2-93 (93)
6 2byk_B Chrac-14; nucleosome sl 99.9 4.1E-22 1.4E-26 166.9 9.0 89 118-206 14-102 (128)
7 1n1j_A NF-YB; histone-like PAI 99.8 3.2E-21 1.1E-25 152.6 8.2 81 118-198 13-93 (93)
8 3b0c_W CENP-W, centromere prot 99.8 1.1E-19 3.7E-24 139.2 6.9 68 7-75 2-69 (76)
9 1b67_A Protein (histone HMFA); 99.7 1.6E-16 5.6E-21 118.5 7.5 66 9-76 2-67 (68)
10 3b0c_T CENP-T, centromere prot 99.7 2.1E-16 7.1E-21 129.4 8.4 89 5-95 3-93 (111)
11 3b0c_W CENP-W, centromere prot 99.6 3.1E-16 1.1E-20 119.9 4.9 62 118-180 9-70 (76)
12 1f1e_A Histone fold protein; a 99.6 5.3E-16 1.8E-20 133.7 5.2 72 115-187 6-77 (154)
13 2byk_A Chrac-16; nucleosome sl 99.5 1.3E-14 4.3E-19 123.3 3.3 97 5-102 15-115 (140)
14 2hue_C Histone H4; mini beta s 99.5 5.4E-14 1.9E-18 109.5 6.4 76 4-81 5-80 (84)
15 1id3_B Histone H4; nucleosome 99.4 1.2E-13 4.3E-18 111.3 7.4 76 4-81 23-98 (102)
16 1ku5_A HPHA, archaeal histon; 99.4 1.6E-13 5.4E-18 103.1 7.3 64 9-74 6-69 (70)
17 1n1j_B NF-YC; histone-like PAI 99.4 1.8E-13 6.1E-18 109.2 7.0 79 4-83 14-92 (97)
18 4g92_C HAPE; transcription fac 99.4 2.4E-13 8.3E-18 112.3 7.2 76 6-82 38-113 (119)
19 1b67_A Protein (histone HMFA); 99.4 5.9E-13 2E-17 99.1 5.7 61 118-180 7-67 (68)
20 1tzy_D Histone H4-VI; histone- 99.3 1.4E-12 4.7E-17 105.1 7.4 76 4-81 24-99 (103)
21 2yfw_B Histone H4, H4; cell cy 99.3 1.6E-12 5.4E-17 104.8 6.7 76 4-81 24-99 (103)
22 3b0c_T CENP-T, centromere prot 99.3 4.5E-12 1.5E-16 103.7 6.7 79 120-200 14-94 (111)
23 2byk_A Chrac-16; nucleosome sl 99.1 4.7E-11 1.6E-15 101.3 3.4 87 118-205 24-114 (140)
24 1jfi_A Transcription regulator 99.1 1.5E-10 5.1E-15 92.5 5.9 76 7-83 9-84 (98)
25 2jss_A Chimera of histone H2B. 99.0 7.1E-09 2.4E-13 91.8 15.0 159 13-179 7-171 (192)
26 2l5a_A Histone H3-like centrom 99.0 4.3E-09 1.5E-13 95.8 11.7 173 7-181 9-227 (235)
27 2hue_C Histone H4; mini beta s 98.9 5.9E-10 2E-14 86.6 5.0 66 118-185 15-80 (84)
28 1id3_B Histone H4; nucleosome 98.9 8.8E-10 3E-14 88.8 5.5 66 118-185 33-98 (102)
29 4g92_C HAPE; transcription fac 98.9 9.3E-10 3.2E-14 90.8 5.7 67 118-185 46-112 (119)
30 1n1j_B NF-YC; histone-like PAI 98.9 1.7E-09 5.9E-14 86.0 5.9 69 118-187 24-92 (97)
31 1tzy_D Histone H4-VI; histone- 98.8 3.7E-09 1.3E-13 85.0 5.4 66 118-185 34-99 (103)
32 1ku5_A HPHA, archaeal histon; 98.8 4.9E-09 1.7E-13 78.5 5.3 59 118-178 11-69 (70)
33 2yfw_B Histone H4, H4; cell cy 98.8 5.4E-09 1.8E-13 84.1 5.1 66 118-185 34-99 (103)
34 2hue_B Histone H3; mini beta s 98.7 3.3E-08 1.1E-12 76.1 8.0 71 7-77 1-74 (77)
35 1taf_B TFIID TBP associated fa 98.7 4E-08 1.4E-12 74.3 7.9 65 8-74 5-69 (70)
36 2yfv_A Histone H3-like centrom 98.5 1.9E-07 6.5E-12 75.1 6.2 70 4-73 22-97 (100)
37 4dra_A Centromere protein S; D 98.5 3.3E-07 1.1E-11 75.1 7.3 76 14-95 32-108 (113)
38 3nqj_A Histone H3-like centrom 98.4 5.6E-07 1.9E-11 70.0 7.6 70 8-77 2-76 (82)
39 3v9r_A MHF1, uncharacterized p 98.4 5E-07 1.7E-11 71.3 7.1 62 14-75 17-79 (90)
40 3vh5_A CENP-S; histone fold, c 98.4 1.6E-07 5.5E-12 79.5 4.3 74 14-93 24-98 (140)
41 1taf_A TFIID TBP associated fa 98.4 8.2E-07 2.8E-11 66.7 7.6 60 14-75 6-65 (68)
42 2ly8_A Budding yeast chaperone 98.4 3.6E-06 1.2E-10 69.7 11.4 110 10-185 2-117 (121)
43 3b0b_B CENP-S, centromere prot 98.3 9.9E-07 3.4E-11 71.7 7.5 76 14-95 24-100 (107)
44 1tzy_C Histone H3; histone-fol 98.3 6.8E-07 2.3E-11 75.5 6.7 74 4-77 57-133 (136)
45 3r45_A Histone H3-like centrom 98.3 8.2E-07 2.8E-11 76.4 6.2 71 4-74 72-147 (156)
46 3nqu_A Histone H3-like centrom 98.3 1.5E-06 5.2E-11 73.6 7.2 75 4-78 56-135 (140)
47 1jfi_A Transcription regulator 98.1 3.1E-06 1.1E-10 67.4 4.9 68 119-187 17-84 (98)
48 2nqb_C Histone H2A; nucleosome 98.1 9.7E-06 3.3E-10 67.2 7.5 67 7-74 21-87 (123)
49 2ly8_A Budding yeast chaperone 98.0 6.4E-06 2.2E-10 68.3 6.2 54 26-79 62-115 (121)
50 1tzy_A Histone H2A-IV; histone 98.0 1.2E-05 4.1E-10 67.2 7.5 67 7-74 23-89 (129)
51 2f8n_G Core histone macro-H2A. 98.0 1.4E-05 4.9E-10 66.0 7.4 67 7-74 20-86 (120)
52 1f66_C Histone H2A.Z; nucleoso 98.0 1.4E-05 4.8E-10 66.7 7.4 68 7-74 25-92 (128)
53 1id3_C Histone H2A.1; nucleoso 98.0 1.2E-05 4.2E-10 67.3 6.9 67 7-74 23-89 (131)
54 2f8n_K Histone H2A type 1; nuc 97.9 2.7E-05 9.3E-10 66.6 7.3 67 7-74 42-108 (149)
55 2l5a_A Histone H3-like centrom 97.8 9.7E-06 3.3E-10 73.8 4.1 59 17-77 169-227 (235)
56 2jss_A Chimera of histone H2B. 97.8 4.4E-05 1.5E-09 67.4 7.4 68 7-74 103-170 (192)
57 2nqb_D Histone H2B; nucleosome 97.7 5.1E-05 1.7E-09 63.0 6.7 65 13-78 37-101 (123)
58 1tzy_B Histone H2B; histone-fo 97.7 6.5E-05 2.2E-09 62.6 6.7 66 13-79 40-105 (126)
59 4dra_A Centromere protein S; D 97.6 8.1E-05 2.8E-09 61.0 5.9 80 115-200 29-109 (113)
60 4dra_E Centromere protein X; D 97.6 0.00024 8.1E-09 55.4 7.9 73 4-76 7-80 (84)
61 3vh5_A CENP-S; histone fold, c 97.5 4.6E-05 1.6E-09 64.5 3.4 79 115-199 21-100 (140)
62 3v9r_A MHF1, uncharacterized p 97.5 0.00014 4.8E-09 57.3 5.4 65 115-179 14-79 (90)
63 3b0b_B CENP-S, centromere prot 97.4 0.00023 7.7E-09 57.8 5.9 80 115-200 21-101 (107)
64 3b0b_C CENP-X, centromere prot 97.4 0.00052 1.8E-08 53.1 7.5 72 5-76 4-76 (81)
65 1h3o_B Transcription initiatio 97.0 0.0025 8.6E-08 48.7 7.7 66 9-75 5-70 (76)
66 2yfv_A Histone H3-like centrom 96.5 0.0026 9E-08 50.9 4.6 71 106-177 19-97 (100)
67 1bh9_B TAFII28; histone fold, 96.5 0.0084 2.9E-07 47.0 7.4 67 9-77 16-83 (89)
68 2hue_B Histone H3; mini beta s 96.3 0.0076 2.6E-07 46.1 5.8 55 127-181 20-74 (77)
69 2nqb_D Histone H2B; nucleosome 96.3 0.0044 1.5E-07 51.3 4.8 63 120-183 40-102 (123)
70 1tzy_B Histone H2B; histone-fo 96.2 0.005 1.7E-07 51.2 4.9 63 120-183 43-105 (126)
71 1taf_B TFIID TBP associated fa 96.2 0.0082 2.8E-07 45.1 5.4 62 115-178 7-69 (70)
72 1taf_A TFIID TBP associated fa 96.1 0.011 3.7E-07 44.2 5.8 59 119-179 7-65 (68)
73 3r45_A Histone H3-like centrom 96.1 0.0048 1.6E-07 53.0 4.2 66 113-178 75-147 (156)
74 3nqu_A Histone H3-like centrom 96.0 0.005 1.7E-07 52.1 4.1 69 113-181 59-134 (140)
75 3fes_A ATP-dependent CLP endop 95.9 0.025 8.6E-07 46.3 8.0 111 27-181 6-118 (145)
76 1tzy_C Histone H3; histone-fol 95.9 0.0071 2.4E-07 50.9 4.4 68 113-180 60-132 (136)
77 3fh2_A Probable ATP-dependent 95.8 0.036 1.2E-06 45.3 8.5 110 28-181 6-118 (146)
78 3nqj_A Histone H3-like centrom 95.8 0.014 4.9E-07 45.1 5.3 51 129-179 24-74 (82)
79 1khy_A CLPB protein; alpha hel 95.2 0.1 3.5E-06 42.1 8.9 107 28-178 5-116 (148)
80 2y1q_A CLPC N-domain, negative 95.1 0.064 2.2E-06 43.5 7.6 108 28-179 5-114 (150)
81 1h3o_B Transcription initiatio 94.6 0.049 1.7E-06 41.5 5.1 56 124-179 15-70 (76)
82 2nqb_C Histone H2A; nucleosome 94.3 0.069 2.4E-06 44.0 5.8 63 116-179 24-88 (123)
83 3v9r_B MHF2, uncharacterized p 94.1 0.086 3E-06 41.2 5.6 49 10-58 2-51 (88)
84 1tzy_A Histone H2A-IV; histone 94.1 0.081 2.8E-06 43.9 5.9 63 116-179 26-90 (129)
85 1k6k_A ATP-dependent CLP prote 94.1 0.11 3.9E-06 41.6 6.6 106 29-180 2-115 (143)
86 1id3_C Histone H2A.1; nucleoso 93.8 0.085 2.9E-06 43.9 5.3 61 118-179 30-90 (131)
87 1f66_C Histone H2A.Z; nucleoso 93.7 0.1 3.4E-06 43.3 5.7 64 116-179 28-93 (128)
88 3zri_A CLPB protein, CLPV; cha 93.7 0.19 6.5E-06 42.9 7.6 108 28-179 24-134 (171)
89 2f8n_G Core histone macro-H2A. 93.5 0.12 4E-06 42.4 5.7 61 118-179 27-87 (120)
90 2f8n_K Histone H2A type 1; nuc 93.1 0.13 4.5E-06 43.8 5.6 63 116-179 45-109 (149)
91 3pxg_A Negative regulator of g 92.0 0.39 1.3E-05 46.5 8.1 110 28-181 5-116 (468)
92 3pxi_A Negative regulator of g 90.6 0.58 2E-05 47.8 8.1 110 28-181 5-116 (758)
93 4dra_E Centromere protein X; D 87.4 1.2 4.2E-05 34.4 5.9 61 119-179 18-79 (84)
94 1bh9_B TAFII28; histone fold, 87.1 0.8 2.7E-05 35.6 4.8 60 120-181 23-83 (89)
95 1r6b_X CLPA protein; AAA+, N-t 84.7 1.7 5.9E-05 44.0 7.2 107 29-181 2-116 (758)
96 3b0b_C CENP-X, centromere prot 83.4 2.1 7.1E-05 32.8 5.5 61 119-179 14-75 (81)
97 1qvr_A CLPB protein; coiled co 80.2 3.3 0.00011 43.0 7.3 108 28-179 5-117 (854)
98 3uk6_A RUVB-like 2; hexameric 67.0 7.3 0.00025 35.1 5.4 66 10-75 259-329 (368)
99 3ksy_A SOS-1, SON of sevenless 66.8 12 0.00043 40.0 7.9 67 7-75 102-168 (1049)
100 2y1q_A CLPC N-domain, negative 65.5 4 0.00014 32.6 2.9 38 132-181 5-42 (150)
101 3fh2_A Probable ATP-dependent 63.9 5 0.00017 32.3 3.3 102 132-255 6-117 (146)
102 1khy_A CLPB protein; alpha hel 62.3 10 0.00035 30.0 4.8 38 132-181 5-42 (148)
103 3fes_A ATP-dependent CLP endop 60.9 5.3 0.00018 32.1 2.9 38 132-181 7-44 (145)
104 1k6k_A ATP-dependent CLP prote 60.3 4.7 0.00016 31.9 2.5 33 133-177 2-34 (143)
105 1fnn_A CDC6P, cell division co 58.5 29 0.00099 30.9 7.7 72 10-81 193-279 (389)
106 2v1u_A Cell division control p 50.6 18 0.00061 32.1 4.9 65 12-76 203-276 (387)
107 2c9o_A RUVB-like 1; hexameric 49.8 18 0.00061 34.4 5.0 66 10-75 366-436 (456)
108 3uk6_A RUVB-like 2; hexameric 47.7 20 0.00068 32.2 4.8 50 130-179 276-329 (368)
109 1r4v_A Hypothetical protein AQ 47.5 80 0.0027 27.2 8.2 142 9-180 26-167 (171)
110 3zri_A CLPB protein, CLPV; cha 44.0 13 0.00044 31.4 2.7 37 132-180 24-60 (171)
111 2r44_A Uncharacterized protein 43.0 71 0.0024 28.2 7.7 50 26-75 224-296 (331)
112 1fnn_A CDC6P, cell division co 42.2 54 0.0018 29.1 6.7 59 132-190 214-284 (389)
113 2c9o_A RUVB-like 1; hexameric 42.1 24 0.00082 33.5 4.6 50 130-179 383-436 (456)
114 3kw6_A 26S protease regulatory 42.1 18 0.0006 26.0 2.8 32 45-76 42-73 (78)
115 3kw6_A 26S protease regulatory 40.2 16 0.00056 26.1 2.4 32 149-180 42-73 (78)
116 2v1u_A Cell division control p 38.6 27 0.00091 31.0 4.1 52 130-181 220-277 (387)
117 2qby_A CDC6 homolog 1, cell di 38.0 64 0.0022 28.4 6.5 68 10-77 197-273 (386)
118 3qao_A LMO0526 protein, MERR-l 36.2 34 0.0012 30.5 4.4 67 7-73 58-124 (249)
119 2ovk_B RLC, myosin regulatory 31.9 1.6E+02 0.0055 22.1 8.2 123 24-193 5-127 (153)
120 1g8p_A Magnesium-chelatase 38 31.8 63 0.0022 28.4 5.4 52 129-180 264-322 (350)
121 1g8p_A Magnesium-chelatase 38 31.1 84 0.0029 27.6 6.1 50 27-76 266-322 (350)
122 3aji_B S6C, proteasome (prosom 30.6 34 0.0012 24.6 2.8 31 47-77 42-72 (83)
123 2dzn_B 26S protease regulatory 30.3 39 0.0013 24.5 3.1 28 50-77 42-69 (82)
124 3aji_B S6C, proteasome (prosom 30.2 33 0.0011 24.7 2.7 30 152-181 43-72 (83)
125 2f3n_A SH3 and multiple ankyri 29.4 25 0.00085 25.5 1.9 22 168-189 5-26 (76)
126 3k1j_A LON protease, ATP-depen 28.7 89 0.003 30.8 6.4 49 27-75 313-374 (604)
127 2dzn_B 26S protease regulatory 28.0 38 0.0013 24.5 2.7 28 155-182 43-70 (82)
128 3vlf_B 26S protease regulatory 27.9 42 0.0014 24.8 3.0 35 45-79 40-74 (88)
129 1wwi_A Hypothetical protein TT 26.8 1.3E+02 0.0043 25.4 6.0 141 10-179 3-143 (148)
130 3bq7_A Diacylglycerol kinase d 26.2 31 0.001 25.3 1.9 24 167-190 9-32 (81)
131 3k1j_A LON protease, ATP-depen 26.0 78 0.0027 31.3 5.4 49 131-179 313-374 (604)
132 3vlf_B 26S protease regulatory 25.9 39 0.0013 25.0 2.5 35 149-183 40-74 (88)
133 3pxg_A Negative regulator of g 25.6 60 0.0021 31.0 4.3 38 132-181 5-42 (468)
134 2chg_A Replication factor C sm 25.6 72 0.0025 25.2 4.2 63 10-74 161-224 (226)
135 1uxc_A FRUR (1-57), fructose r 25.4 91 0.0031 21.9 4.3 36 8-44 10-45 (65)
136 1ny9_A Transcriptional activat 25.4 35 0.0012 27.4 2.2 79 62-143 2-85 (143)
137 2qby_B CDC6 homolog 3, cell di 25.2 73 0.0025 28.3 4.6 65 10-76 197-270 (384)
138 2krk_A 26S protease regulatory 23.4 54 0.0019 24.3 2.8 29 48-76 53-81 (86)
139 3v9r_B MHF2, uncharacterized p 22.7 80 0.0028 24.4 3.7 40 120-159 8-48 (88)
140 2gle_A Neurabin-1; SAM domain, 22.2 31 0.0011 24.6 1.2 22 168-189 7-28 (74)
141 2qby_A CDC6 homolog 1, cell di 22.0 90 0.0031 27.4 4.5 54 130-183 216-275 (386)
142 2d8c_A Phosphatidylcholine:cer 22.0 28 0.00097 26.9 1.0 23 167-189 19-41 (97)
143 2krk_A 26S protease regulatory 21.2 54 0.0018 24.3 2.4 28 153-180 54-81 (86)
No 1
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=100.00 E-value=5.5e-33 Score=239.46 Aligned_cols=140 Identities=19% Similarity=0.290 Sum_probs=130.2
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHH
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 88 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~ 88 (296)
+||+|+|.||||++||. .+||+||++++++|+++|+++|+++|++.|.++|||||+++||++||..|||++|++.
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~---- 78 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDY---- 78 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTC----
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCcc----
Confidence 89999999999999988 8999999999999999999999999999999999999999999999999999987431
Q ss_pred HHHHHHHhccccccchhhhhhhhhhhh--cc-chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCC
Q psy3459 89 LQKYREATKGEKSVNCEVYQEISVEDV--FQ-SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKR 165 (296)
Q Consensus 89 L~~~re~~k~kk~~~~e~~~~~~~e~L--f~-~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kR 165 (296)
++| +. ++.|++++. +..+||+||++.+++|..+|+.+|+++|+++|+..+|
T Consensus 79 ------------------------~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~R 132 (154)
T 1f1e_A 79 ------------------------DGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGR 132 (154)
T ss_dssp ------------------------CSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------ccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 233 22 558899887 7789999999999999999999999999999999999
Q ss_pred CcccchhHhhchhh
Q psy3459 166 KTINGEDILFAMSA 179 (296)
Q Consensus 166 KTI~~eDVl~AL~~ 179 (296)
|||+++||++||+.
T Consensus 133 KTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 133 KTVQGEDVEKAITY 146 (154)
T ss_dssp SEECHHHHHHHHHH
T ss_pred CccCHHHHHHHHHh
Confidence 99999999999975
No 2
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=2.3e-29 Score=221.39 Aligned_cols=130 Identities=28% Similarity=0.498 Sum_probs=109.9
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchH
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 83 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~ 83 (296)
.++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH
Confidence 468999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccc---------chhhhhhhhhhhhccchhhh-hhhcCCCccccch
Q psy3459 84 PLKIYLQKYREATKGEKSV---------NCEVYQEISVEDVFQSSGTI-LEQQNGQNETIAK 135 (296)
Q Consensus 84 ~l~~~L~~~re~~k~kk~~---------~~e~~~~~~~e~Lf~~s~ri-mk~~lp~~~~isk 135 (296)
+|+.+|..||+..+.|+++ +.|.+..++ ++||+.++.. +..+.++...+..
T Consensus 89 ~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Q-qelf~~Ar~~~~~~~~~~~~~~~~ 149 (179)
T 1jfi_B 89 EVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQ-QELFAKARQQQAELAQQEWLQMQQ 149 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998887764 445555555 7888877444 4444555555544
No 3
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=1.1e-27 Score=210.72 Aligned_cols=116 Identities=29% Similarity=0.460 Sum_probs=101.7
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHHHHHH
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYR 197 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L~~~r 197 (296)
.+.|+||..+| +++||+||+++|++||++||+|||++||++|..++||||+++||++||++|||++|+++|+.+|+.||
T Consensus 20 ~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~lk~~L~~yr 98 (179)
T 1jfi_B 20 AINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 98 (179)
T ss_dssp HHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 55999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccccchhhhhhHHHhhhhchhhHHHHhhhcC
Q psy3459 198 EATKGEKFISFITSEASDRCHLEKRKTINGEDILFAMSALG 238 (296)
Q Consensus 198 e~~k~kk~~~~~~se~~~r~~~e~~~~~~~qe~lf~~a~~~ 238 (296)
+..+.|+..+.. .+ ...+..++++++|++||++||..
T Consensus 99 e~~~~kkr~~~K-~~---~sg~~~Eel~~~Qqelf~~Ar~~ 135 (179)
T 1jfi_B 99 TVALKRRKASSR-LE---NLGIPEEELLRQQQELFAKARQQ 135 (179)
T ss_dssp HHHHHHHHHHHH-HH---HSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccch-hh---ccCCCHHHHHHHHHHHHHHHHHH
Confidence 988765433211 00 02234589999999999999975
No 4
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.94 E-value=4.5e-27 Score=197.05 Aligned_cols=102 Identities=35% Similarity=0.558 Sum_probs=88.2
Q ss_pred CCCCccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCc
Q psy3459 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDS 80 (296)
Q Consensus 1 m~~~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~ 80 (296)
|+.+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred CCCccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhcccccc
Q psy3459 81 YVEPLKIYLQKYREATKGEKSV 102 (296)
Q Consensus 81 yv~~l~~~L~~~re~~k~kk~~ 102 (296)
|+++|+.+|..||+..+.|+..
T Consensus 81 fl~~lk~~l~~yr~~~~~kk~~ 102 (128)
T 2byk_B 81 FVPSLTQDLEVYRKVVKEKKES 102 (128)
T ss_dssp THHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988865
No 5
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.92 E-value=1.9e-25 Score=176.94 Aligned_cols=92 Identities=86% Similarity=1.330 Sum_probs=85.8
Q ss_pred CCccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcch
Q psy3459 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYV 82 (296)
Q Consensus 3 ~~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv 82 (296)
++++|+.||+|+|.||||+.+|++.+||+||+.++++|+++||++|+++|++.|.+++||||+++||..|++.+||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3459 83 EPLKIYLQKYRE 94 (296)
Q Consensus 83 ~~l~~~L~~~re 94 (296)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 6
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.86 E-value=4.1e-22 Score=166.94 Aligned_cols=89 Identities=29% Similarity=0.487 Sum_probs=83.5
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHHHHHH
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYR 197 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L~~~r 197 (296)
.+.|+||..+|++.+||+||+.+|++||++||+|||++|+++|..++||||+++||++||+.+||.+|+++|+.+|..||
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~lk~~l~~yr 93 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYR 93 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 45889998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccc
Q psy3459 198 EATKGEKFI 206 (296)
Q Consensus 198 e~~k~kk~~ 206 (296)
+..+.||..
T Consensus 94 ~~~~~kk~~ 102 (128)
T 2byk_B 94 KVVKEKKES 102 (128)
T ss_dssp HHHTTC---
T ss_pred HHHHhhhhh
Confidence 999887654
No 7
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.84 E-value=3.2e-21 Score=152.63 Aligned_cols=81 Identities=77% Similarity=1.169 Sum_probs=78.6
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHHHHHH
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYR 197 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L~~~r 197 (296)
.+.|+||..+|++.+||+||+.++++||.+||+||+++|++.|..++||||+++||++||+.|||.+|++|++.+|++||
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~~~~~~l~~~r 92 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR 92 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHHHHHHHHHHHh
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H
Q psy3459 198 E 198 (296)
Q Consensus 198 e 198 (296)
+
T Consensus 93 ~ 93 (93)
T 1n1j_A 93 E 93 (93)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.79 E-value=1.1e-19 Score=139.20 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=63.7
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
...||+|+|.||||+++| +++||+||+++|++|+++||++||++|++.|.+++||||+++||+.|++.
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 468999999999999999 58999999999999999999999999999999999999999999999854
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.66 E-value=1.6e-16 Score=118.49 Aligned_cols=66 Identities=35% Similarity=0.447 Sum_probs=63.6
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
.||+++|.||||+. ++.+||+||..+|++|++.|+.+|+.+|+..|.+++||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 6689999999999999999999999999999999999999999999999876
No 10
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.65 E-value=2.1e-16 Score=129.39 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=79.0
Q ss_pred ccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHH
Q psy3459 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 84 (296)
Q Consensus 5 ~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~ 84 (296)
.+|..||+++|.||+|.. +..+||+|+.+++.+++.+|+..|+..|..+|+|+|||||+++||..||+..|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 578899999999999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHH
Q psy3459 85 LKIYLQKY--REA 95 (296)
Q Consensus 85 l~~~L~~~--re~ 95 (296)
+...+++| ++.
T Consensus 81 l~~l~~~~lp~E~ 93 (111)
T 3b0c_T 81 LHVLVERHLPLEY 93 (111)
T ss_dssp HHHHHHHHSCHHH
T ss_pred HHHHHHHhCcHHH
Confidence 99999998 553
No 11
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.61 E-value=3.1e-16 Score=119.92 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=58.2
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
.+.|+||+.+| +++||+||+++|++|+.+||++|+++|++.|..++||||+++||++|++.|
T Consensus 9 ~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 9 TLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45888888888 799999999999999999999999999999999999999999999998764
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.60 E-value=5.3e-16 Score=133.66 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=67.7
Q ss_pred hccchhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchH
Q psy3459 115 VFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 187 (296)
Q Consensus 115 Lf~~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~ 187 (296)
..+++.|+||+.+|. .+||+||++++++|+++|+++|+++|+++|+..|||||+++||++||..|||++|++
T Consensus 6 P~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 6 PKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred CccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 344679999999887 999999999999999999999999999999999999999999999999999999876
No 13
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.47 E-value=1.3e-14 Score=123.28 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=61.7
Q ss_pred ccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHH-HhcCCCccCcccHHHHhhhcCCCcchH
Q psy3459 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRC-HLEKRKTINGEDILFAMSALGFDSYVE 83 (296)
Q Consensus 5 ~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a-~~~~RKTI~~eDVl~AL~~lgF~~yv~ 83 (296)
..++.||.|.|.||||.. |+..+||++|..++.+|++.||.+|+..|+..| ...+||||++.||..|+...+.-+|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 356789999999999987 888899999999999999999999999999999 999999999999999998655544444
Q ss_pred ---HHHHHHHHHHHHhcccccc
Q psy3459 84 ---PLKIYLQKYREATKGEKSV 102 (296)
Q Consensus 84 ---~l~~~L~~~re~~k~kk~~ 102 (296)
|.+..+..|++..+.+++.
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 8899999999988876655
No 14
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.47 E-value=5.4e-14 Score=109.52 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=70.7
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcc
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 81 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~y 81 (296)
++....||+++|.||++.. +..+||+|+.+.++++++.|+..|+.+|...|+|++||||+++||..||+.+|++-|
T Consensus 5 r~~~~~ip~~~I~Riar~~--Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 5566789999999999988 447999999999999999999999999999999999999999999999999998755
No 15
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.45 E-value=1.2e-13 Score=111.34 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=70.2
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcc
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 81 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~y 81 (296)
++....||+++|.||++.. +..+||.|+.+.+++++++|+..|+.+|..+|+|++||||+++||..||+.+|+.-|
T Consensus 23 r~~i~~ip~~~I~Rlar~~--Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HhccCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4556689999999999998 447999999999999999999999999999999999999999999999999998765
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.45 E-value=1.6e-13 Score=103.09 Aligned_cols=64 Identities=30% Similarity=0.449 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.||+++|.||+|+. +..+||+++..++++++..|+..|+..|+..|.|+|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999997 67899999999999999999999999999999999999999999999985
No 17
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.43 E-value=1.8e-13 Score=109.16 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=68.8
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchH
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 83 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~ 83 (296)
...+..||.|.|.||||.. |+..+||.||..++.+|++.||.+|+..|+..|.+++||||+++||..|++..++.+|..
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 4456789999999999987 776799999999999999999999999999999999999999999999999888877754
No 18
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.42 E-value=2.4e-13 Score=112.26 Aligned_cols=76 Identities=28% Similarity=0.334 Sum_probs=68.7
Q ss_pred cccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcch
Q psy3459 6 QDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYV 82 (296)
Q Consensus 6 ~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv 82 (296)
.+..||.|.|.||||.. |+..+||+||..++.+|++.||.+|+..|+..|..++||||+++||..|++..+.-+|.
T Consensus 38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 34579999999999965 88899999999999999999999999999999999999999999999999876644443
No 19
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.36 E-value=5.9e-13 Score=99.14 Aligned_cols=61 Identities=31% Similarity=0.379 Sum_probs=57.5
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
...|+|++. ++.+||+||..++++|+.+||.+|+++||..|...+||||+++||..|++.|
T Consensus 7 ~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 457888877 7899999999999999999999999999999999999999999999999987
No 20
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.35 E-value=1.4e-12 Score=105.11 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=70.1
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcc
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 81 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~y 81 (296)
++.+..||.++|.||++..-. .+||.|+.+.++.+++.|+..|+.+|...|++++||||+++||..||+.+|++-|
T Consensus 24 r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 455667999999999999843 6999999999999999999999999999999999999999999999999998755
No 21
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.33 E-value=1.6e-12 Score=104.85 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=63.8
Q ss_pred CccccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcc
Q psy3459 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 81 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~y 81 (296)
++....||+++|.||++..- ..+||.|+.+.+..+++.|+..|+.+|...|++++||||+++||..||+.+|++-|
T Consensus 24 r~~~~gip~~~I~Rlar~~G--~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ------CCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhccCCHHHHHHHHHHcC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 44556799999999999984 36999999999999999999999999999999999999999999999999998755
No 22
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.28 E-value=4.5e-12 Score=103.65 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=73.5
Q ss_pred hhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHHHHH--H
Q psy3459 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKY--R 197 (296)
Q Consensus 120 ~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L~~~--r 197 (296)
+|+++.. ...+||+|+.+++.+|+.+|+..|+..|..+|+..|||||+++||+.||+..|+..|..++..++++| +
T Consensus 14 ~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l~~~~lp~ 91 (111)
T 3b0c_T 14 KQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERHLPL 91 (111)
T ss_dssp HHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHHHHHHSCH
T ss_pred HHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHHHHHhCcH
Confidence 6677665 67999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHh
Q psy3459 198 EAT 200 (296)
Q Consensus 198 e~~ 200 (296)
|..
T Consensus 92 E~~ 94 (111)
T 3b0c_T 92 EYR 94 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.07 E-value=4.7e-11 Score=101.29 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=61.3
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHh-hhcCCCcccchhHhhchhh---cCCccchHHHHHHH
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRC-HLEKRKTINGEDILFAMSA---LGFDSYVEPLKIYL 193 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c-~~~kRKTI~~eDVl~AL~~---LgF~~yv~~l~~~L 193 (296)
.+.+|||.. |+..+||++|..+|++|+..||.+|+..|...| ...+||||+++||.+|+.. |+|-.++-|.+..+
T Consensus 24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~ki~l 102 (140)
T 2byk_A 24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIRV 102 (140)
T ss_dssp -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSCC--
T ss_pred HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccchhhH
Confidence 346777654 888999999999999999999999999999999 9999999999999999985 55555555889999
Q ss_pred HHHHHHhccccc
Q psy3459 194 QKYREATKGEKF 205 (296)
Q Consensus 194 ~~~re~~k~kk~ 205 (296)
..|++..+.++.
T Consensus 103 ~~~~~~~~~~~~ 114 (140)
T 2byk_A 103 HQFQEMLRLNRS 114 (140)
T ss_dssp ------------
T ss_pred HHHHHHHHhccc
Confidence 999988776543
No 24
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.06 E-value=1.5e-10 Score=92.49 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=59.7
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchH
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 83 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~ 83 (296)
...||.+.|.||||. -|+..+||.+|..++.++++.|+.+|+..|...|.+.+||||+++||..|++.-+.-+|..
T Consensus 9 ~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 9 NARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 467999999999996 4666799999999999999999999999999999999999999999999998765555544
No 25
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.01 E-value=7.1e-09 Score=91.78 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=121.2
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHH----HHHH
Q psy3459 13 ANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP----LKIY 88 (296)
Q Consensus 13 A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~----l~~~ 88 (296)
.-|+|++|+.-|+ ..||.+|...|...+..+..-|+.+|...+...+|+||++.||..|++-+==++.... ....
T Consensus 7 ~yi~kvLkqv~p~-~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kA 85 (192)
T 2jss_A 7 SYIYKVLKQTHPD-TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRA 85 (192)
T ss_dssp HHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4689999999886 6899999999999999999999999999999999999999999999875433333222 2222
Q ss_pred HHHHHHHhccccccchhhhhhhhhhhhcc--chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q psy3459 89 LQKYREATKGEKSVNCEVYQEISVEDVFQ--SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRK 166 (296)
Q Consensus 89 L~~~re~~k~kk~~~~e~~~~~~~e~Lf~--~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRK 166 (296)
+..|... ++.+..-.-.+ -.|+ ...|+|+.......+|+.+|...+..+.-.++.-|...|...|...+|+
T Consensus 86 v~k~~~s---k~~~s~s~rag----l~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~ 158 (192)
T 2jss_A 86 VTKYSSS---TQAQSSSARAG----LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVK 158 (192)
T ss_dssp HHHHHHH---CSSSCHHHHSS----CCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhccc---cccccccccCC----CcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333322 11111111112 2255 3477887754444699999999999999999999999999999999999
Q ss_pred cccchhHhhchhh
Q psy3459 167 TINGEDILFAMSA 179 (296)
Q Consensus 167 TI~~eDVl~AL~~ 179 (296)
+|+|+||-.|+..
T Consensus 159 ~I~p~~i~lAi~n 171 (192)
T 2jss_A 159 RITPRHLQLAIRG 171 (192)
T ss_dssp SCCHHHHHHHHHT
T ss_pred ccCHHHHHHHHhc
Confidence 9999999998763
No 26
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.3e-09 Score=95.81 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=121.9
Q ss_pred ccCCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCc
Q psy3459 7 DRFLPIANVAKIMKKAIPE------SGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDS 80 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~------~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~ 80 (296)
-+.+|+.+..|++++...+ +.+++..|..+||++++.|+--|-..+|-.|.+++|-||.+.|+-.|..--|-..
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~ 88 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFL 88 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccC
Confidence 4678999999999987642 5799999999999999999999999999999999999999999988876554221
Q ss_pred ---------------chHHHHHHHHHHHHHhc-ccccc--------chhhhhhhh---------------hhhhccch-h
Q psy3459 81 ---------------YVEPLKIYLQKYREATK-GEKSV--------NCEVYQEIS---------------VEDVFQSS-G 120 (296)
Q Consensus 81 ---------------yv~~l~~~L~~~re~~k-~kk~~--------~~e~~~~~~---------------~e~Lf~~s-~ 120 (296)
|....+..+++|-.... +..-. .+.-..+++ -.|++.-+ .
T Consensus 89 ~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~ 168 (235)
T 2l5a_A 89 VPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDE 168 (235)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHH
Confidence 11112222223321100 00000 011111111 13444322 2
Q ss_pred hhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 121 TILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 121 rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
|++++. .--+||.++.+.+.....+|+.-|...|..+|+-.+||||+++||.-||+.+|
T Consensus 169 RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 333322 22589999999999999999999999999999999999999999999999765
No 27
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.95 E-value=5.9e-10 Score=86.65 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y 185 (296)
++.|+++.... .+||+|+.+.+.+|..+|+..|+..|..+|+..+||||+++||..||+.+||+-|
T Consensus 15 ~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 15 AIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp HHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 44677766533 7899999999999999999999999999999999999999999999999998766
No 28
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.93 E-value=8.8e-10 Score=88.80 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=60.0
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y 185 (296)
++.|+++.... .+||.|+.+.+.+|..+|+..|+.+|..+|+..+||||+++||..||+.+||+-|
T Consensus 33 ~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 33 AIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp HHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 45777766533 7899999999999999999999999999999999999999999999999999866
No 29
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.93 E-value=9.3e-10 Score=90.77 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=59.1
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y 185 (296)
.+.|+||. .|+..+||+||..++++|+..||.+|++.|++.|...+||||+++||..|++..+.-+|
T Consensus 46 RIkrImK~-d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 46 RIKKVMKA-DPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp HHHHHHHT-STTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHhh-CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 34677764 59999999999999999999999999999999999999999999999999987553333
No 30
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.89 E-value=1.7e-09 Score=86.02 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=61.8
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchH
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 187 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~ 187 (296)
.+.|+||.. |+..+||+||..++.+|+..||.+|+..|.+.|...+||||+++||..|++..++-+|..
T Consensus 24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 346777665 777799999999999999999999999999999999999999999999999988877753
No 31
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.81 E-value=3.7e-09 Score=84.99 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=60.1
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y 185 (296)
++.|+++.... .+||.|+.+.+..+...|+..|+..|..+|+..+||||+++||..||+.+||+-|
T Consensus 34 ~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 34 AIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 45777776544 6999999999999999999999999999999999999999999999999999765
No 32
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.80 E-value=4.9e-09 Score=78.47 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=54.7
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchh
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~ 178 (296)
+..|++++. +..++|+++..++++++..|+..|+..|+.+|...|||||+++||..|++
T Consensus 11 ~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 558888875 56899999999999999999999999999999999999999999999986
No 33
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.77 E-value=5.4e-09 Score=84.13 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=57.0
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y 185 (296)
++.++++.... .+||.|+.+.+..+...|+..|+..|..+|+..+||||+++||..||+.+||+.|
T Consensus 34 ~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 34 AIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 45777766544 5999999999999999999999999999999999999999999999999998765
No 34
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.73 E-value=3.3e-08 Score=76.09 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=64.2
Q ss_pred ccCCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 7 DRFLPIANVAKIMKKAIP---ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP---~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
++.||+++..|++++... ++.|++.+|..+||++++.|+--|...||..|.|+||+||.+.|+-.|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999843 56899999999999999999999999999999999999999999998876544
No 35
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.71 E-value=4e-08 Score=74.30 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=61.6
Q ss_pred cCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 8 RFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 8 ~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
-.||.++|.+|+++. |..++|+|+...|.+-++..+..|+.+|...+.|.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~--Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI--GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 379999999999988 66799999999999999999999999999999999999999999999985
No 36
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.48 E-value=1.9e-07 Score=75.07 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred CccccCCchhHHHHHHHhhCC------CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHh
Q psy3459 4 REQDRFLPIANVAKIMKKAIP------ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP------~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL 73 (296)
+..++.||+++..|++++... .+.+++.+|..+||++++.|+--|...||..|.|+||+||.+.|+-.|.
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 456889999999999999873 2689999999999999999999999999999999999999999998775
No 37
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.46 E-value=3.3e-07 Score=75.14 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=66.3
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHH
Q psy3459 14 NVAKIMKKAIPE-SGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKY 92 (296)
Q Consensus 14 ~I~RIiK~~LP~-~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~ 92 (296)
+|.||+++.... ++.||+++..+|.+.+..|+.-|+..+...|+++|||||+++||..+++. -+.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr------~~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR------SNSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh------CHHHHHHHHHH
Confidence 689999988543 57799999999999999999999999999999999999999999999987 35667777766
Q ss_pred HHH
Q psy3459 93 REA 95 (296)
Q Consensus 93 re~ 95 (296)
.+.
T Consensus 106 ~~e 108 (113)
T 4dra_A 106 SEE 108 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 38
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.44 E-value=5.6e-07 Score=69.99 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=62.8
Q ss_pred cCCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 8 RFLPIANVAKIMKKAIP-----ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 8 ~~LP~A~I~RIiK~~LP-----~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
+.+|+++..|++|+... .+.+++.+|..+||++++.|+--|...||..|.|+||+||.+.|+-.|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999862 35799999999999999999999999999999999999999999988865433
No 39
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5e-07 Score=71.34 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 14 NVAKIMKKAIPES-GKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 14 ~I~RIiK~~LP~~-~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
+|.+|..+.++.+ +.||+++..+|.+.+..++.-++..+...|+|+|||||+++||..+++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 6889999998865 8999999999999999999999999999999999999999999999865
No 40
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.41 E-value=1.6e-07 Score=79.51 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=62.9
Q ss_pred HHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHH
Q psy3459 14 NVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKY 92 (296)
Q Consensus 14 ~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~ 92 (296)
+|.||+++... .++.||.++..+|.+.+..|+.-|+..+..+|.|+|||||+++||..+++.- +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 57889988754 3689999999999999999999999999999999999999999999999873 3444444444
Q ss_pred H
Q psy3459 93 R 93 (296)
Q Consensus 93 r 93 (296)
.
T Consensus 98 ~ 98 (140)
T 3vh5_A 98 S 98 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.40 E-value=8.2e-07 Score=66.73 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=56.9
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 14 NVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 14 ~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
.|.||+|+. |..+++.++...|.+.+..++.-|..+|..+|.|+|||||+++||..|++.
T Consensus 6 ~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 789999998 767999999999999999999999999999999999999999999999864
No 42
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.6e-06 Score=69.74 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=92.9
Q ss_pred CchhHHHHHHHhhC----C--CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchH
Q psy3459 10 LPIANVAKIMKKAI----P--ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 83 (296)
Q Consensus 10 LP~A~I~RIiK~~L----P--~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~ 83 (296)
+|+.+..|++++.. + .+.+.+.+|..+||++++.|+--|-..+|-.|.|+.|
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~---------------------- 59 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVP---------------------- 59 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC----------------------
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCc----------------------
Confidence 68888888888653 2 2579999999999999999999998888887777711
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhhhhhhhccchhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhc
Q psy3459 84 PLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLE 163 (296)
Q Consensus 84 ~l~~~L~~~re~~k~kk~~~~e~~~~~~~e~Lf~~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~ 163 (296)
.+--+||.|+.+.+.....+|+.-|.-.|..+++-.
T Consensus 60 --------------------------------------------gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA 95 (121)
T 2ly8_A 60 --------------------------------------------RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA 95 (121)
T ss_dssp --------------------------------------------CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112478889999999999999999999999999999
Q ss_pred CCCcccchhHhhchhhcCCccc
Q psy3459 164 KRKTINGEDILFAMSALGFDSY 185 (296)
Q Consensus 164 kRKTI~~eDVl~AL~~LgF~~y 185 (296)
+||||+++||.-||+..|-.-|
T Consensus 96 ~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 96 KRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp TCCCBCHHHHHHHHHHTTCGGG
T ss_pred CCCcCcHHHHHHHHHhCCCcCC
Confidence 9999999999999999886433
No 43
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.35 E-value=9.9e-07 Score=71.68 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHH
Q psy3459 14 NVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKY 92 (296)
Q Consensus 14 ~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~ 92 (296)
+|.||+++... .+.++|+++..+|.+.+..|+.-|+..|..+|.|+|||||+++||..|++.. +.+...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 58899998743 2479999999999999999999999999999999999999999999999873 4555555555
Q ss_pred HHH
Q psy3459 93 REA 95 (296)
Q Consensus 93 re~ 95 (296)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 44
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.34 E-value=6.8e-07 Score=75.46 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=66.6
Q ss_pred CccccCCchhHHHHHHHhhC---CCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 4 REQDRFLPIANVAKIMKKAI---PESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~L---P~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
+..++.||++++.||+++.. .++.+++.+|..+||++++.|+--|...||..|.|++|+||.+.||-.|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 35688999999999999984 356899999999999999999999999999999999999999999988875443
No 45
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.30 E-value=8.2e-07 Score=76.37 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=63.1
Q ss_pred CccccCCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 4 REQDRFLPIANVAKIMKKAIP-----ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP-----~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
+..++.||++++.||+++... .+.+++.+|..+||++++.|+--|...||..|.+++|+||.+.||-.|..
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 456889999999999999862 25799999999999999999999999999999999999999999988864
No 46
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.27 E-value=1.5e-06 Score=73.62 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred CccccCCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCC
Q psy3459 4 REQDRFLPIANVAKIMKKAIP-----ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGF 78 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP-----~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF 78 (296)
+..++.||++++.||+++... .+.+++.+|..+||++++.|+--|...||..|.|++|+||.+.||-.|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 457889999999999999862 257999999999999999999999999999999999999999999888765443
No 47
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.08 E-value=3.1e-06 Score=67.35 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=51.0
Q ss_pred hhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchH
Q psy3459 119 SGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVE 187 (296)
Q Consensus 119 s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~ 187 (296)
+.++|+. .|+..+||.+|.-++.+++-.|+.+|+..|...+...+||||+++||-.|++.-+.-+|..
T Consensus 17 IkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 17 IKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp HHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred HHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 3666654 6666799999999999999999999999999999999999999999999998765555543
No 48
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.05 E-value=9.7e-06 Score=67.22 Aligned_cols=67 Identities=10% Similarity=0.196 Sum_probs=61.9
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-.. .||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+.
T Consensus 21 gL~fPV~ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSC-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5789999999999997433 499999999999999999999999999999999999999999999975
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.4e-06 Score=68.26 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCC
Q psy3459 26 SGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 79 (296)
Q Consensus 26 ~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~ 79 (296)
.-|||.|+.+.+.....+|+.-|...|..++++++||||+++||.-||+..|-.
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ 115 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 115 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCc
Confidence 358999999999999999999999999999999999999999999999998864
No 50
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.02 E-value=1.2e-05 Score=67.22 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=61.9
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-.. .||+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+.
T Consensus 23 gLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYA-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSS-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5789999999999997433 499999999999999999999999999999999999999999999975
No 51
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.99 E-value=1.4e-05 Score=65.97 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=61.8
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+.
T Consensus 20 gLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 478999999999999832 3599999999999999999999999999999999999999999999975
No 52
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.99 E-value=1.4e-05 Score=66.70 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=62.1
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-....||+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+.
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 57899999999999974333599999999999999999999999999999999999999999999975
No 53
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.98 E-value=1.2e-05 Score=67.33 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=61.9
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-.. .||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+.
T Consensus 23 gLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYA-QRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSC-SEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5789999999999987433 499999999999999999999999999999999999999999999975
No 54
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.88 E-value=2.7e-05 Score=66.60 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=61.8
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-.. .||+.+|...|..+.+.++..|...|...|.+.+|++|+++||..|+.
T Consensus 42 gLqFPVgrI~R~LK~~~~a-~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYS-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSC-SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccc-cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 5789999999999997433 499999999999999999999999999999999999999999999975
No 55
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=9.7e-06 Score=73.83 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=54.1
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 17 KIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 17 RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
||++.+ +.-|||.++.+.+......|+.-|...|..+|++++||||+++||.-||+.+|
T Consensus 169 RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 666655 55799999999999999999999999999999999999999999999999765
No 56
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.79 E-value=4.4e-05 Score=67.42 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=62.3
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
.+.||.+.|.|+||+.-....||+.+|...|..+.+.++..|...|...|.+.+|++|+|+||..|+.
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 57899999999999973323599999999999999999999999999999999999999999999975
No 57
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.75 E-value=5.1e-05 Score=62.95 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=59.4
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCC
Q psy3459 13 ANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGF 78 (296)
Q Consensus 13 A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF 78 (296)
..|+|++|++-|+ +.||.+|...|...+..+..-|+.+|..+|..++|+||++.||..|..-|-=
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 4689999999877 6899999999999999999999999999999999999999999999865433
No 58
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.70 E-value=6.5e-05 Score=62.56 Aligned_cols=66 Identities=29% Similarity=0.336 Sum_probs=59.8
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCC
Q psy3459 13 ANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 79 (296)
Q Consensus 13 A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~ 79 (296)
..|+|++|++-|+ +.||.+|...|...+..+..-|+.+|..++..++|+||++.||..|..-|-=+
T Consensus 40 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 105 (126)
T 1tzy_B 40 IYVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG 105 (126)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence 3699999999877 68999999999999999999999999999999999999999999998655433
No 59
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.61 E-value=8.1e-05 Score=60.97 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=69.0
Q ss_pred hccchhhhhhhcCC-CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHH
Q psy3459 115 VFQSSGTILEQQNG-QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYL 193 (296)
Q Consensus 115 Lf~~s~rimk~~lp-~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L 193 (296)
|+-.+.+++++... .++.+|+++..+|.+.+-.|+.-|+..+..+|.-.|||||+++||.-+++.- +.|..+|
T Consensus 29 l~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l 102 (113)
T 4dra_A 29 VHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYI 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHH
Confidence 34467888887754 4799999999999999999999999999999999999999999999999873 6777777
Q ss_pred HHHHHHh
Q psy3459 194 QKYREAT 200 (296)
Q Consensus 194 ~~~re~~ 200 (296)
..|.+..
T Consensus 103 ~~~~~el 109 (113)
T 4dra_A 103 TDKSEEI 109 (113)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 60
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.58 E-value=0.00024 Score=55.41 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=63.0
Q ss_pred CccccCCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 4 REQDRFLPIANVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 4 ~~~d~~LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
...+..+|..+|.||++.... +.++||+||..++.+....|+..-...|...+...+-.+|..+|+-+.+-.|
T Consensus 7 ~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 7 AGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp ----CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 345678999999999998886 5799999999999999999999999999999999999999999998876543
No 61
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.53 E-value=4.6e-05 Score=64.51 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=66.7
Q ss_pred hccchhhhhhhcCC-CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHH
Q psy3459 115 VFQSSGTILEQQNG-QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYL 193 (296)
Q Consensus 115 Lf~~s~rimk~~lp-~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L 193 (296)
|+-.+++|...... .++.+|+++..+|.+.+-.|+.-|+..+..+|.-.|||||+++||.-+++.- +.|..+|
T Consensus 21 l~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L 94 (140)
T 3vh5_A 21 VHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYI 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHH
Confidence 44567888876644 5899999999999999999999999999999999999999999999999974 5566666
Q ss_pred HHHHHH
Q psy3459 194 QKYREA 199 (296)
Q Consensus 194 ~~~re~ 199 (296)
..|.+.
T Consensus 95 ~~~~~e 100 (140)
T 3vh5_A 95 TQKSDE 100 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 62
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00014 Score=57.29 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=58.8
Q ss_pred hccchhhhhhhcCCCc-cccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 115 VFQSSGTILEQQNGQN-ETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 115 Lf~~s~rimk~~lp~~-~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
|+-.++++..+.++.+ +.+|+++..+|.+.+-.++.-++..+..+|+-.|||||+++||.-+++.
T Consensus 14 l~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 14 LWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4456788888887754 9999999999999999999999999999999999999999999998876
No 63
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.40 E-value=0.00023 Score=57.78 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=66.5
Q ss_pred hccchhhhhhhcCC-CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHHHHH
Q psy3459 115 VFQSSGTILEQQNG-QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYL 193 (296)
Q Consensus 115 Lf~~s~rimk~~lp-~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~~~L 193 (296)
|+-.+.+++++... .+.++|+++..+|.+.+-.|+.-|+..|..+|.-.|||||+++||.-|++.. +.|...|
T Consensus 21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l 94 (107)
T 3b0b_B 21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYI 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHH
Confidence 33456788776533 4689999999999999999999999999999999999999999999999984 5666666
Q ss_pred HHHHHHh
Q psy3459 194 QKYREAT 200 (296)
Q Consensus 194 ~~~re~~ 200 (296)
..|.+..
T Consensus 95 ~~~~~el 101 (107)
T 3b0b_B 95 TQKSDEL 101 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 64
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.39 E-value=0.00052 Score=53.07 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=63.1
Q ss_pred ccccCCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 5 EQDRFLPIANVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 5 ~~d~~LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
+++..+|..+|.||++.... +.+||++||..++.+....||.--...|...++.++-..|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45678999999999999987 4689999999999999999999999999999999999999999998866543
No 65
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.00 E-value=0.0025 Score=48.69 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
-|++..+.-++++.-|+ ..+..|+.++|.+.|..||.-+++.|...|++-+-.||...||.-.|+.
T Consensus 5 vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 47899999999988665 6999999999999999999999999999999999999999999888764
No 66
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.49 E-value=0.0026 Score=50.92 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=51.0
Q ss_pred hhhhhhhhhhccch--hhhhhhcCC------CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhch
Q psy3459 106 VYQEISVEDVFQSS--GTILEQQNG------QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177 (296)
Q Consensus 106 ~~~~~~~e~Lf~~s--~rimk~~lp------~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL 177 (296)
.||.-+ +-|++.. .|++++... .+.+++.+|..+||+++-.|+--|...||-.|.-.||+||.+.|+--|.
T Consensus 19 ~yQkst-~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 19 KYQRST-DLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp ----------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred hhcccc-hhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 344444 4555533 666654431 3799999999999999999999999999999999999999999997664
No 67
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.49 E-value=0.0084 Score=46.96 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcC-CCccCcccHHHHhhhcC
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK-RKTINGEDILFAMSALG 77 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~-RKTI~~eDVl~AL~~lg 77 (296)
.||++.|.|||...++ ..+|.+...+|.=.+.+||.-|..+|.++....+ ..-|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 6999999999999973 5899999999999999999999999999998765 56899999999977654
No 68
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.27 E-value=0.0076 Score=46.11 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 127 NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 127 lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
..++.+++.+|..++|+++-.|+--|...||..|.-.||+||.+.|+--|..--|
T Consensus 20 ~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 20 FKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp TCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 3357999999999999999999999999999999999999999999987765433
No 69
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.27 E-value=0.0044 Score=51.34 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=54.5
Q ss_pred hhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCc
Q psy3459 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 183 (296)
Q Consensus 120 ~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~ 183 (296)
-+++|+. .|+..||.+|...|......+..-|+.+|...+.-.+|+||++.||..|.+-|==+
T Consensus 40 yKVLKQV-hpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 102 (123)
T 2nqb_D 40 YTVLKQV-HPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPG 102 (123)
T ss_dssp HHHHHHH-CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCH
T ss_pred HHHHHHh-CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcH
Confidence 4555555 45678999999999999999999999999999999999999999999998765433
No 70
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.20 E-value=0.005 Score=51.19 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=54.6
Q ss_pred hhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCc
Q psy3459 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 183 (296)
Q Consensus 120 ~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~ 183 (296)
-+++|+. .|+..||.+|...|......+..-|+.+|...++-.+|+||++.||..|.+-|==+
T Consensus 43 yKVLKQV-hpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 105 (126)
T 1tzy_B 43 YKVLKQV-HPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG 105 (126)
T ss_dssp HHHHHHH-CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred HHHHHHh-CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence 4555555 45678999999999999999999999999999999999999999999998765433
No 71
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.16 E-value=0.0082 Score=45.12 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=51.4
Q ss_pred hccch-hhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchh
Q psy3459 115 VFQSS-GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178 (296)
Q Consensus 115 Lf~~s-~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~ 178 (296)
|...+ .++.+ ..+- -++|.|+...|.+-+..-+.-|.-+|...++..||||++++||=.||+
T Consensus 7 lp~~~v~~iae-s~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 7 ISAESMKVIAE-SIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCHHHHHHHHH-HTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred CCHHHHHHHHH-HCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 43433 44443 3332 389999999999999999999999999999999999999999998875
No 72
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.09 E-value=0.011 Score=44.19 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=51.4
Q ss_pred hhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 119 SGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 119 s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
..++++.+.- -+++.++...|.+.+-.++.-|...|..+|.-.|||||+++||--|++.
T Consensus 7 i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 7 IMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3566666433 3899999999999999999999999999999999999999999888763
No 73
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.07 E-value=0.0048 Score=53.04 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=54.2
Q ss_pred hhhccch--hhhhhhcCC-----CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchh
Q psy3459 113 EDVFQSS--GTILEQQNG-----QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178 (296)
Q Consensus 113 e~Lf~~s--~rimk~~lp-----~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~ 178 (296)
|-|++.. .|++++... .+.+++.+|..+||+++-.|+--|...||..|.-.+|+||.+.||--|+.
T Consensus 75 eLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 75 HLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4555533 666654331 36899999999999999999999999999999999999999999977754
No 74
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.03 E-value=0.005 Score=52.10 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=56.0
Q ss_pred hhhccch--hhhhhhcCC-----CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 113 EDVFQSS--GTILEQQNG-----QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 113 e~Lf~~s--~rimk~~lp-----~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
|-|++.. .|++++... .+.+++.+|..+||+++-.|+--|...||..|.-.+|+||.+.||--|+.--|
T Consensus 59 ~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 59 HLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 4555533 666654431 37899999999999999999999999999999999999999999987765444
No 75
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=95.94 E-value=0.025 Score=46.31 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=72.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhh
Q psy3459 27 GKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEV 106 (296)
Q Consensus 27 ~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~ 106 (296)
-++|..++.+|.. |.+.|...+...|.++|++.||=.-+=+. ....|+.+
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~~~~----~~~iL~~~-------------- 55 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREEEGI----AAKVLSKV-------------- 55 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHCSSH----HHHHHHHH--------------
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCCCCh----HHHHHHHc--------------
Confidence 3688888888865 77889999999999999999985433211 12222221
Q ss_pred hhhhhhhhhccchhhhhhhc--CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 107 YQEISVEDVFQSSGTILEQQ--NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 107 ~~~~~~e~Lf~~s~rimk~~--lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+++.+.|-....+.+... .+.+..+|..++.++.+ |...|..-+...|+++|+|-||=+-+
T Consensus 56 --gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 56 --GFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp --TCCHHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 111111111111111100 13457799999999987 66778888999999999999986554
No 76
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=95.88 E-value=0.0071 Score=50.91 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=55.6
Q ss_pred hhhccch--hhhhhhc---CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 113 EDVFQSS--GTILEQQ---NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 113 e~Lf~~s--~rimk~~---lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
|-|++.. .|++++. ...+.+++.+|..+||+++-.|+--|...||..+.-.+|+||.+.||--|..--
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 4455532 5655544 335799999999999999999999999999999999999999999998776543
No 77
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=95.84 E-value=0.036 Score=45.31 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=70.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |.+.|...+...|+++|++.||=.-+=+. ....|..+
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~~~~----~~~iL~~~--------------- 54 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHEGEGV----AAKALESM--------------- 54 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHCCSH----HHHHHHHT---------------
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhCCCCh----HHHHHHHc---------------
Confidence 577888887755 77889999999999999999985432111 11222111
Q ss_pred hhhhhhhhccchhhhhhh---cCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 108 QEISVEDVFQSSGTILEQ---QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~---~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+++.+.|-....+.+.. ..+....+|..++.++.+ |...|..-+...|+++|+|-||=+-+
T Consensus 55 -gv~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 55 -GISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp -TCCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 11111111111111110 112356789999999987 66678888999999999999986543
No 78
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.014 Score=45.11 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=47.1
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 129 ~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
.+.+++.+|..++|+++-.|+--|...||-.|.-.||+||.+.|+--|..-
T Consensus 24 ~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 24 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999777543
No 79
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=95.17 E-value=0.1 Score=42.06 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=64.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |...|...+...|.++|++.||=.-+=+.....|+ .+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~----~~--------------- 53 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT----SA--------------- 53 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH----HH---------------
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH----Hc---------------
Confidence 678888887755 77899999999999999999985433222122121 11
Q ss_pred hhhhhhhhccchhhhhhh---cC--CCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchh
Q psy3459 108 QEISVEDVFQSSGTILEQ---QN--GQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~---~l--p~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~ 178 (296)
+++.+.|-....+.+.. .. +....+|..+..++.+ |...+..-+...|+++|+|-||=
T Consensus 54 -g~~~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 54 -GINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -TCCHHHHHHHHHHHHTTSCCC-------CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 11111111111111100 00 1235678888888876 55666666889999999999987
No 80
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=95.14 E-value=0.064 Score=43.47 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
+++..++.+|.. |.+.|...+...|.++|++.||=.-+-+... ..|+.+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~----~iL~~~--------------- 53 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAA----KALQAL--------------- 53 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHCSSHHH----HHHHHT---------------
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCCCCHHH----HHHHHc---------------
Confidence 678888888755 7789999999999999999998443322111 111111
Q ss_pred hhhhhhhhccchhhhhhhc--CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 108 QEISVEDVFQSSGTILEQQ--NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~~--lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
+++.+.|-....+.+... .+....+|..++.++.. |...+..-+...|+++|+|-||=.
T Consensus 54 -g~~~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 54 -GLGSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp -TCCHHHHHHHHHHHHCCC-----CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHhccCCcccccCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 011111111111111000 01245688888888876 666677778999999999999854
No 81
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=94.61 E-value=0.049 Score=41.49 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=51.0
Q ss_pred hhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 124 EQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 124 k~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
-+++.|+..+..|+.+++.+.|-+||.-+++.|-..|+.-+-.|+.+.||.-.|+.
T Consensus 15 v~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 15 VREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 35567889999999999999999999999999999999999999999999877764
No 82
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.34 E-value=0.069 Score=43.98 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=54.5
Q ss_pred cc--chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 116 FQ--SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 116 f~--~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
|+ .+.|+|+...... +|+.+|...|..+.-.|+..|...|...|...+|++|+|+||-.|+..
T Consensus 24 fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 24 FPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp SCHHHHHHHHHHTTSCS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 55 4478887764544 999999999999999999999999999999999999999999998873
No 83
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.086 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=41.9
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q psy3459 10 LPIANVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHL 58 (296)
Q Consensus 10 LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~ 58 (296)
||..+|.||++.... +++|||+||..++++....||..-...|.+-.+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999997765 4689999999999999999999888777655443
No 84
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=94.11 E-value=0.081 Score=43.92 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=54.6
Q ss_pred cc--chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 116 FQ--SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 116 f~--~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
|+ .+.|+|+...... +|+.+|-..|..+.-.|...|...|...|...+|++|+|+||-.|+..
T Consensus 26 fPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 26 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp SCHHHHHHHHHHTTSSS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 55 3478887764544 999999999999999999999999999999999999999999999874
No 85
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=94.10 E-value=0.11 Score=41.63 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhhh
Q psy3459 29 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQ 108 (296)
Q Consensus 29 ISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~~ 108 (296)
+|..++.+|.. |.+.|...+...|.++|++.||=.-+ + ....|+.+
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~--~----~~~iL~~~---------------- 47 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALLSNP--S----AREALEAC---------------- 47 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHHTTCH--H----HHHHHHHT----------------
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHHHcCc--h----HHHHHHHc----------------
Confidence 56666666644 77889999999999999999983221 1 22222221
Q ss_pred hhhhhhhccchhhhhhhc----C----CCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 109 EISVEDVFQSSGTILEQQ----N----GQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 109 ~~~~e~Lf~~s~rimk~~----l----p~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
+++.+.|-....+.+... . +.+..+|..++.++.+ |...+..-+...|+++|+|-||=.-
T Consensus 48 g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 48 SVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp TCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 111111111111111111 1 1245789998888877 6677777799999999999998653
No 86
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.77 E-value=0.085 Score=43.92 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
.+.|+|+...... +|+.+|-..|..+.-.|+.-|...|-..|...+|++|+|+||-.|+..
T Consensus 30 rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 30 RVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHTTCSCS-EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3477887764444 999999999999999999999999999999999999999999999874
No 87
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=93.72 E-value=0.1 Score=43.32 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=54.1
Q ss_pred cc--chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 116 FQ--SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 116 f~--~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
|+ .+.|+|+....-..+|+.+|.-.+..+.-.|...|...|...|...++++|+|+||..|+..
T Consensus 28 fPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 28 FPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 55 33677876554445999999999999999999999999999999999999999999998764
No 88
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=93.68 E-value=0.19 Score=42.95 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=69.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |.+.|...+...|.++|++.||=+-+=+. ....|+.+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~~~~----a~~iL~~~--------------- 72 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNPLSD----VRLVLKQA--------------- 72 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCTTSH----HHHHHHHT---------------
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHccCcH----HHHHHHHc---------------
Confidence 567777777754 77889999999999999999985433111 12222211
Q ss_pred hhhhhhhhccchh--hhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhh-hcCCCcccchhHhhchhh
Q psy3459 108 QEISVEDVFQSSG--TILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCH-LEKRKTINGEDILFAMSA 179 (296)
Q Consensus 108 ~~~~~e~Lf~~s~--rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~-~~kRKTI~~eDVl~AL~~ 179 (296)
+++.+.|-.... ..+....+.+..+|..++.+|.+ |...+. +-+...|+.+|+|-||=.
T Consensus 73 -gvd~~~l~~~l~~l~~~p~~~~~~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 73 -GLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp -TCCHHHHHHHHHHHSCCCCCCSSCCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 111111111111 01111123457799999999988 777788 889999999999999854
No 89
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=93.52 E-value=0.12 Score=42.45 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=52.3
Q ss_pred chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 118 SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 118 ~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
.+.|+|+..... -+|+.+|...+..+.-.|..-|...|...|...+|++|+|+||..|+..
T Consensus 27 ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 27 RMLRYIKKGHPK-YRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHSSS-CEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHcCccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 347778765433 4999999999999999999999999999999999999999999998873
No 90
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=93.15 E-value=0.13 Score=43.75 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=54.2
Q ss_pred cc--chhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 116 FQ--SSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 116 f~--~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
|+ .+.|+|+...... +|+.+|...|..+.-.|+..|...|...|...+|++|+|+||-.|+..
T Consensus 45 FPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 45 FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SCHHHHHHHHHHTTSCS-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccHHHHHHHHHcccccc-ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 55 4478887764444 999999999999999999999999999999999999999999998774
No 91
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.03 E-value=0.39 Score=46.53 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |.+.|...+...|+++|++.||=.-+=+.. ...|..+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~----~~iL~~~--------------- 53 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIA----AKALQAL--------------- 53 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHH----HHHHHHH---------------
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHH----HHHHHHc---------------
Confidence 678888888755 778899999999999999999865543222 2222222
Q ss_pred hhhhhhhhccchhhhhhhc--CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 108 QEISVEDVFQSSGTILEQQ--NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~~--lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+++.+.|-....+.+... .++...+|..++.+|.. |...+..-+...|+++|+|-||=.-+
T Consensus 54 -gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~~ 116 (468)
T 3pxg_A 54 -GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (468)
T ss_dssp -TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhcc
Confidence 111111111111111000 12346789999999987 56667788999999999999986543
No 92
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.63 E-value=0.58 Score=47.76 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |.+.|...+...|+++|++.||=.-+=+... ..|..+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~----~iL~~~--------------- 53 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAA----KALQAL--------------- 53 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHH----HHHHHH---------------
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHH----HHHHHc---------------
Confidence 678888888755 7788999999999999999998554322222 222211
Q ss_pred hhhhhhhhccchhhhhhh--cCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 108 QEISVEDVFQSSGTILEQ--QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~--~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+++.+.|-....+.+.. ..++...+|..++.+|.. |...|..-+...|+++|+|-||=.-+
T Consensus 54 -gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~~ 116 (758)
T 3pxi_A 54 -GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (758)
T ss_dssp -TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcC
Confidence 11111111111111100 012356799999999987 66667788999999999999986543
No 93
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=87.44 E-value=1.2 Score=34.35 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=52.4
Q ss_pred hhhhhhhcCC-CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 119 SGTILEQQNG-QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 119 s~rimk~~lp-~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
..++++...- ++.+|++||..++.+-...||.=....|...+..++-.+|..+|+-+-+-.
T Consensus 18 i~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 18 VSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 3677775544 799999999999999999999999999999999999999999998776543
No 94
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=87.08 E-value=0.8 Score=35.62 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=49.1
Q ss_pred hhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcC-CCcccchhHhhchhhcC
Q psy3459 120 GTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEK-RKTINGEDILFAMSALG 181 (296)
Q Consensus 120 ~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~k-RKTI~~eDVl~AL~~Lg 181 (296)
++++...+ +.+++.+...+|.-.+.+||.-|..+|.+++...+ ..-|.|.||-.|...|.
T Consensus 23 Krl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 23 KRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 44443333 56899999999999999999999999999998765 45799999999887664
No 95
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.70 E-value=1.7 Score=44.04 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhhh
Q psy3459 29 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQ 108 (296)
Q Consensus 29 ISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~~ 108 (296)
+|..++.+|. .|...|...+...|+++|++.||=. + +.....|..+
T Consensus 2 ~t~~a~~~l~------------~A~~~A~~~~h~~i~~eHLLlaLl~----~--~~~~~iL~~~---------------- 47 (758)
T 1r6b_X 2 LNQELELSLN------------MAFARAREHRHEFMTVEHLLLALLS----N--PSAREALEAC---------------- 47 (758)
T ss_dssp BCHHHHHHHH------------HHHHHHHHTTBSEECHHHHHHHHTT----S--HHHHHHHHHT----------------
T ss_pred CCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHc----C--cHHHHHHHHc----------------
Confidence 4556666664 4778899999999999999999843 1 1222222221
Q ss_pred hhhhhhhccchhhhhhhcC--------CCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 109 EISVEDVFQSSGTILEQQN--------GQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 109 ~~~~e~Lf~~s~rimk~~l--------p~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
+++.+.|-......+...+ +....+|..++.+|.+ |...+...+...|+++|+|-||=.-
T Consensus 48 gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 48 SVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp TCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 1111122111111111111 1346789999998887 4555666688899999999988654
Q ss_pred C
Q psy3459 181 G 181 (296)
Q Consensus 181 g 181 (296)
+
T Consensus 116 ~ 116 (758)
T 1r6b_X 116 Q 116 (758)
T ss_dssp T
T ss_pred c
Confidence 3
No 96
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=83.44 E-value=2.1 Score=32.76 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=51.5
Q ss_pred hhhhhhhcCC-CccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 119 SGTILEQQNG-QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 119 s~rimk~~lp-~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
..++++..-. ++.+|++||..++.+--..||.=....|...+..++-..|.++|+-+.+-.
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 3667766544 789999999999999999999999999999998899999999998775433
No 97
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.20 E-value=3.3 Score=42.99 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccchhhh
Q psy3459 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVY 107 (296)
Q Consensus 28 rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~~e~~ 107 (296)
++|..++.+|.. |...|...+...|+++|++.||=.-+-+. +...|..+
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl~~~~~~----~~~iL~~~--------------- 53 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLLKDERSL----AWRLLEKA--------------- 53 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHCCSSSSH----HHHHHHTT---------------
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCCCcH----HHHHHHHc---------------
Confidence 678888888755 77889999999999999999983322211 11111111
Q ss_pred hhhhhhhhccchhhhhhh---c--CCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 108 QEISVEDVFQSSGTILEQ---Q--NGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 108 ~~~~~e~Lf~~s~rimk~---~--lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
+++.+.|-....+.+.. . .+....+|..++.+|.+ |...+..-+...|+.+|+|-||=.
T Consensus 54 -gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~vL~~------------A~~~a~~~g~~~I~~ehlLlall~ 117 (854)
T 1qvr_A 54 -GADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNR------------AEGLMEELKDRYVAVDTLVLALAE 117 (854)
T ss_dssp -SSCHHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHHHHHH------------HHHHHHTTTCSSCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCcEeeHHHHHHHHHh
Confidence 01111111111111100 0 01235688888888877 555666678888999999988864
No 98
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.95 E-value=7.3 Score=35.08 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=47.9
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 10 LPIANVAKIMKKAIP-ESGKIAKDARECVQECVS----EFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 10 LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a~----eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
++...+..+++..+. .+..++.++.+.+.+.+. -.+.-+-..|...|...++.+|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 345566666665443 245799999998888775 244445556677788889999999999999975
No 99
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=66.84 E-value=12 Score=39.98 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=52.3
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
.+.+|...|.|++|.... -||+..|..-+.-..+-...-|-.-|...|...+++.|++.|+..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 578999999999976643 4999988877776655555555555677778889999999999988854
No 100
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=65.47 E-value=4 Score=32.63 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+++..++.+|.. |...|...++..|.++|+|.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 678888888876 88889999999999999999985433
No 101
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=63.92 E-value=5 Score=32.27 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=58.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccc----------hHHHHHHHHHHHHHhc
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY----------VEPLKIYLQKYREATK 201 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~y----------v~~l~~~L~~~re~~k 201 (296)
++|..++.+|.. |...|..-+...|+++|+|.||=+-+=+.. .+.++..++.+.. +
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~--~ 71 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIG--Q 71 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHC--C
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhc--c
Confidence 578888888877 888899999999999999999865321111 2333333333321 1
Q ss_pred ccccccccccchhhhhhHHHhhhhchhhHHHHhhhcCCCCCCchhHHHHHHHHH
Q psy3459 202 GEKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255 (296)
Q Consensus 202 ~kk~~~~~~se~~~r~~~e~~~~~~~qe~lf~~a~~~f~~~~~~~~~~~~~~~~ 255 (296)
..+. ... +.......++.++.-. ..|+.-=+.|+.+--+.|+=.++
T Consensus 72 ~~~~---~~~--~~~~s~~~~~vL~~A~---~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 72 GSQP---TTG--HIPFTPRAKKVLELSL---REGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CSCC---CCS--CCCBCHHHHHHHHHHH---HHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCC---CcC--CCcCCHHHHHHHHHHH---HHHHHcCCCcCcHHHHHHHHHhC
Confidence 1110 000 1112333344444322 33333446799999998887765
No 102
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=62.27 E-value=10 Score=30.02 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
++|..++.+|.. |...|...+...|.++|+|.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 578888888876 88889999999999999999985433
No 103
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=60.95 E-value=5.3 Score=32.14 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
++|..++.+|.. |...|..-+...|.++|+|.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 578888888877 78889999999999999999986543
No 104
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=60.26 E-value=4.7 Score=31.89 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhch
Q psy3459 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177 (296)
Q Consensus 133 iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL 177 (296)
+|..++.+|.. |...|...+...|.++|+|.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56677777766 7888999999999999999998
No 105
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.49 E-value=29 Score=30.93 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=49.6
Q ss_pred CchhHHHHHHHhhCCC---CCcccHHHHHHHHHHH------------HHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 10 LPIANVAKIMKKAIPE---SGKIAKDARECVQECV------------SEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 10 LP~A~I~RIiK~~LP~---~~rISkDA~~al~~~a------------~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
|+...+..+++..+.. ...++.++...+.+.+ .-++..+...|...|...++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3345566666655432 2378999988888777 233455556677788888899999999999988
Q ss_pred hcCCCcc
Q psy3459 75 ALGFDSY 81 (296)
Q Consensus 75 ~lgF~~y 81 (296)
....+.+
T Consensus 273 ~~~~~~~ 279 (389)
T 1fnn_A 273 EVLFGIS 279 (389)
T ss_dssp HHSCCCC
T ss_pred HHhhhhH
Confidence 7654433
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=50.61 E-value=18 Score=32.15 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 12 IANVAKIMKKAIP---ESGKIAKDARECVQECVS------EFISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 12 ~A~I~RIiK~~LP---~~~rISkDA~~al~~~a~------eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
...+..|++..+. .+..++.++.+.+.+.+. -.+.-+...|...|...++.+|+.+||..|+..+
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4566666665432 235789999888887775 3455556667778888899999999999998775
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.79 E-value=18 Score=34.43 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=47.1
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH----HHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 10 LPIANVAKIMKKAIP-ESGKIAKDARECVQECV----SEFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 10 LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a----~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
++...+..+++..+. .+..++.++...+.+.+ --....+...|..+|...++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 344555666654432 23568999988887766 2345556677888898899999999999999765
No 108
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.70 E-value=20 Score=32.16 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHH----HHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 130 NETIAKDARECVQECVS----EFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 130 ~~~iskdAkeai~~cas----eFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
+..++.++.+.|.+.+. -.+.-+-..|...|...++.+|+.+||-.|++.
T Consensus 276 ~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 46789999988877664 344445556777888889999999999999986
No 109
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=47.51 E-value=80 Score=27.25 Aligned_cols=142 Identities=10% Similarity=0.157 Sum_probs=96.5
Q ss_pred CCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHH
Q psy3459 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 88 (296)
Q Consensus 9 ~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~ 88 (296)
-+|.+-+.|+++.+.. .-|.|+-..-+...+..=+.-|.--|.+-|+.+||-+|.+.|+= .-..+++.
T Consensus 26 vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP----------ITKGlqEs 93 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN----------ITKALEEH 93 (171)
T ss_dssp CTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC----------CCHHHHHH
T ss_pred cCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccHHHHHH
Confidence 5688899999999954 55778777888888888888888888899999999999999972 22456777
Q ss_pred HHHHHHHhccccccchhhhhhhhhhhhccchhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcc
Q psy3459 89 LQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTI 168 (296)
Q Consensus 89 L~~~re~~k~kk~~~~e~~~~~~~e~Lf~~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI 168 (296)
+..|++.. +++-.++++.... .-.|-+.-++.|....+-+-+.--...++. .-.+-..+ |..
T Consensus 94 i~~Fr~ld-----------e~iel~pIL~~la----~~PPld~~l~ee~e~~LPeI~GgL~valAR-v~K~l~Pe--rnp 155 (171)
T 1r4v_A 94 IKNFQKIE-----------QDMGVDELLEYIA----FIPPVEMNVGEDLKSEYRNIMGGLLLMHAD-VIKKATGE--RKP 155 (171)
T ss_dssp HHHHHTCC-----------SCCSHHHHHHHHT----CCCSCSSEECHHHHTTHHHHHHHHHHHHHH-HHHHHCCC--SSC
T ss_pred HHHHHhcc-----------cccchHHHHHHHH----hCCCCCCChhHHHHHHHHHHHHHHHHHHHH-HHHHhCCC--CCC
Confidence 77777651 1222234333222 345667888998888777655544333332 33333333 668
Q ss_pred cchhHhhchhhc
Q psy3459 169 NGEDILFAMSAL 180 (296)
Q Consensus 169 ~~eDVl~AL~~L 180 (296)
.++|+-.|-+-+
T Consensus 156 ~~ehwE~a~~v~ 167 (171)
T 1r4v_A 156 SREAMEFVAQIV 167 (171)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888887775543
No 110
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=43.95 E-value=13 Score=31.41 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
+++..++.+|.. |.+.|..-+...|.++|+|.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 578888888877 7888999999999999999998554
No 111
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=43.04 E-value=71 Score=28.21 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHHHHHH-----------------------HHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 26 SGKIAKDARECVQECVSEF-----------------------ISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 26 ~~rISkDA~~al~~~a~eF-----------------------I~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
++.++.++.+.+.+.+... ...+...|...|...+|..|+++||..|+..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4568888877776654321 1223344556677789999999999888754
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=42.18 E-value=54 Score=29.13 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHH------------HHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCccchHHHH
Q psy3459 132 TIAKDARECVQECV------------SEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLK 190 (296)
Q Consensus 132 ~iskdAkeai~~ca------------seFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~~yv~~l~ 190 (296)
.++.++.+.+.+.+ .-++.-+...|...|..+++.+|+.+||..|+..+....+.+.+.
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~ 284 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLI 284 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHH
Confidence 68888888887776 233444556677778888899999999999999887655544443
No 113
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=42.11 E-value=24 Score=33.55 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHH----HHHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 130 NETIAKDARECVQECV----SEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 130 ~~~iskdAkeai~~ca----seFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
++.++.++...+.+.| ......+...|..+|..+++.+|+++||..|+.-
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 4568889888887766 2345566678889999999999999999999765
No 114
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=42.09 E-value=18 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 45 ISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 45 I~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
|.-|..+|.-.|...++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55566677778888899999999999998753
No 115
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=40.17 E-value=16 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.1
Q ss_pred HHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 149 ISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 149 I~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
|.-|..+|.-.|...++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44555667777777889999999999999764
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=38.59 E-value=27 Score=30.99 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHHH------HHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 130 NETIAKDARECVQECVS------EFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 130 ~~~iskdAkeai~~cas------eFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
+..++.++.+.+.+.+. -.+.-+-..|...|...++.+|+.+||-.|+..+.
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 45788888888877665 34445555677788888999999999999998874
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.00 E-value=64 Score=28.36 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=47.4
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 10 LPIANVAKIMKKAIP---ESGKIAKDARECVQECVS------EFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 10 LP~A~I~RIiK~~LP---~~~rISkDA~~al~~~a~------eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
|+...+..+++..+. ....++.++...+.+.+. -.+.-+...|...+...++.+|+.+||..|+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 344556666665332 124788998888877665 23334566777788888999999999999988764
No 118
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=36.24 E-value=34 Score=30.47 Aligned_cols=67 Identities=7% Similarity=0.115 Sum_probs=35.1
Q ss_pred ccCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHh
Q psy3459 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73 (296)
Q Consensus 7 d~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL 73 (296)
++.+|+..|.+++....++...+-..-...|.+-....-..+..-...+....+..+++.++.+.++
T Consensus 58 ~~G~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~~~~~e~f~~f 124 (249)
T 3qao_A 58 ELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGF 124 (249)
T ss_dssp HTTCCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHTTTC
T ss_pred HCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHhc
Confidence 5679999999999754222111111222223332333333333333334455777888888766644
No 119
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=31.93 E-value=1.6e+02 Score=22.06 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHHHHHHHHhccccccc
Q psy3459 24 PESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVN 103 (296)
Q Consensus 24 P~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L~~~re~~k~kk~~~ 103 (296)
|....++.+-...+.+ .| ...-.++.-+|+.+++..+|..+|+.--...+...+..+ .
T Consensus 5 ~~~~~l~~~~~~~l~~---~F---------~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~------~---- 62 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKE---AF---------TMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC------P---- 62 (153)
T ss_dssp --CTTCCHHHHHHHHH---HH---------HHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS------S----
T ss_pred cccCCCCHHHHHHHHH---HH---------HHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc------C----
Confidence 4445666655444433 33 223346677899999999999999875555565555554 1
Q ss_pred hhhhhhhhhhhhccchhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCc
Q psy3459 104 CEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 183 (296)
Q Consensus 104 ~e~~~~~~~e~Lf~~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~ 183 (296)
..|+-++........+....+ ..+.+ .+-......+.-+|+.+++..+|..+|..
T Consensus 63 ----g~i~~~eF~~~~~~~~~~~~~-----~~~l~----------------~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 117 (153)
T 2ovk_B 63 ----GQLNFTAFLTLFGEKVSGTDP-----EDALR----------------NAFSMFDEDGQGFIPEDYLKDLLENMGDN 117 (153)
T ss_dssp ----SCCCSHHHHHTTTTTTTTCCC-----TTHHH----------------HHHHTTCSSCSSCCCHHHHHHHHHHSSSC
T ss_pred ----CCCCHHHHHHHHHHHhccCCh-----HHHHH----------------HHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 112222221111111111111 01111 23344556777889999999999999865
Q ss_pred cchHHHHHHH
Q psy3459 184 SYVEPLKIYL 193 (296)
Q Consensus 184 ~yv~~l~~~L 193 (296)
-=-+.+...+
T Consensus 118 ~~~~~~~~~~ 127 (153)
T 2ovk_B 118 FSKEEIKNVW 127 (153)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3333344433
No 120
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=31.82 E-value=63 Score=28.42 Aligned_cols=52 Identities=8% Similarity=-0.080 Sum_probs=39.2
Q ss_pred CccccchHHHHHHHHHHHH-------HHHHHHHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 129 QNETIAKDARECVQECVSE-------FISFITSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 129 ~~~~iskdAkeai~~case-------FI~~lts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
.++.++.++.+.|.+.+.- -+..+...|...|...++.+|+.+||-.|+.-+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 3568999999988776542 344455567778888899999999998887654
No 121
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=31.15 E-value=84 Score=27.57 Aligned_cols=50 Identities=8% Similarity=-0.088 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHHHH-------HHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 27 GKIAKDARECVQECVSE-------FISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 27 ~rISkDA~~al~~~a~e-------FI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
..+|.++...|.+.+.- -+.-+...|...|...++.+|+.+||..|+..+
T Consensus 266 ~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 266 VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp CBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 58999999988776543 334445566777888899999999999887543
No 122
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=30.56 E-value=34 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.057 Sum_probs=24.5
Q ss_pred HHHHHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 47 FITSEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 47 ~las~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
-|..+|.-.|...++..|+.+|+..|++.+-
T Consensus 42 ~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 42 SICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 3445666777888889999999999998754
No 123
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=30.32 E-value=39 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHhhHHHHhcCCCccCcccHHHHhhhcC
Q psy3459 50 SEASDRCHLEKRKTINGEDILFAMSALG 77 (296)
Q Consensus 50 s~An~~a~~~~RKTI~~eDVl~AL~~lg 77 (296)
.+|.-.|...++..|+.+|+..|++..-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 3455566677889999999999998764
No 124
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=30.18 E-value=33 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 152 ITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 152 lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
|..+|.-.|...++..|+.+|+..|++.+-
T Consensus 43 l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 43 ICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 444666777788889999999999998764
No 125
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=29.43 E-value=25 Score=25.51 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=18.7
Q ss_pred ccchhHhhchhhcCCccchHHH
Q psy3459 168 INGEDILFAMSALGFDSYVEPL 189 (296)
Q Consensus 168 I~~eDVl~AL~~LgF~~yv~~l 189 (296)
=|++||..-|+.+||+.|++..
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F 26 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRF 26 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999999887754
No 126
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=28.70 E-value=89 Score=30.82 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=38.4
Q ss_pred CcccHHHHHHHHHHHH-------------HHHHHHHHHhhHHHHhcCCCccCcccHHHHhhh
Q psy3459 27 GKIAKDARECVQECVS-------------EFISFITSEASDRCHLEKRKTINGEDILFAMSA 75 (296)
Q Consensus 27 ~rISkDA~~al~~~a~-------------eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~ 75 (296)
..++.+|...|.+.+. --+.-+-..|..+|...++.+|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4799999999887653 223334456888999999999999999999964
No 127
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=27.96 E-value=38 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.058 Sum_probs=21.7
Q ss_pred HhhHHhhhcCCCcccchhHhhchhhcCC
Q psy3459 155 EASDRCHLEKRKTINGEDILFAMSALGF 182 (296)
Q Consensus 155 ~An~~c~~~kRKTI~~eDVl~AL~~LgF 182 (296)
+|.-.|..+++..|+.+|+..|++..-.
T Consensus 43 eAa~~ai~~~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 43 EAGLRAVRKNRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCcCHHHHHHHHHHHHc
Confidence 4555566667889999999999998743
No 128
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=27.93 E-value=42 Score=24.79 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCC
Q psy3459 45 ISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 79 (296)
Q Consensus 45 I~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~ 79 (296)
|.-|..+|.-.|...++..|+.+|+..|++.+-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 33444556666777788999999999999876543
No 129
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=26.83 E-value=1.3e+02 Score=25.43 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=92.7
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhcCCCcchHHHHHHH
Q psy3459 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYL 89 (296)
Q Consensus 10 LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~lgF~~yv~~l~~~L 89 (296)
+|.+-+.|+++.+.. .-|.|+-..-+...+..=+.-|.--|.+-|+.+||-+|.+.|+= .-..+++.+
T Consensus 3 m~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP----------ITkGlqesi 70 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP----------IAKGLQETL 70 (148)
T ss_dssp SCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC----------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccHHHHHHH
Confidence 577889999999954 55777777888888888888888889999999999999999972 224567777
Q ss_pred HHHHHHhccccccchhhhhhhhhhhhccchhhhhhhcCCCccccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCccc
Q psy3459 90 QKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTIN 169 (296)
Q Consensus 90 ~~~re~~k~kk~~~~e~~~~~~~e~Lf~~s~rimk~~lp~~~~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~ 169 (296)
..|++.. +++-.+++.... -.-.|-+.-++.|....+-+-..--.-.++..- .+-.. .-|...
T Consensus 71 ~~F~~ld-----------e~iel~pil~~l----a~~PPld~~~~~e~e~~lP~I~GgL~v~lArv~-K~l~p-e~rnp~ 133 (148)
T 1wwi_A 71 QEFRRMD-----------TALELKPVLDAL----AALPPLDLEVAEDVRNLLPELAGALVVAYARVL-KELDP-ALKNPQ 133 (148)
T ss_dssp HHHHTTC-----------CCCCHHHHHHHH----HTSCCCSSEECHHHHHHHHHHHHHHHHHHHHHH-HHHST-TCSSCC
T ss_pred HHHHHcc-----------cccchHHHHHHH----HhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-HHhCc-ccCCCC
Confidence 7777651 122223333322 234566788888888877665554333333222 22222 224577
Q ss_pred chhHhhchhh
Q psy3459 170 GEDILFAMSA 179 (296)
Q Consensus 170 ~eDVl~AL~~ 179 (296)
++|+-.|-+-
T Consensus 134 ~eh~E~a~~v 143 (148)
T 1wwi_A 134 TEHHERAERV 143 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666443
No 130
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=26.17 E-value=31 Score=25.33 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred cccchhHhhchhhcCCccchHHHH
Q psy3459 167 TINGEDILFAMSALGFDSYVEPLK 190 (296)
Q Consensus 167 TI~~eDVl~AL~~LgF~~yv~~l~ 190 (296)
.=++++|..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999986543
No 131
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.03 E-value=78 Score=31.25 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHH-------------HHHHHHHHHhhHHhhhcCCCcccchhHhhchhh
Q psy3459 131 ETIAKDARECVQECVS-------------EFISFITSEASDRCHLEKRKTINGEDILFAMSA 179 (296)
Q Consensus 131 ~~iskdAkeai~~cas-------------eFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~ 179 (296)
..++.+|...|.+.++ .-+.-+-..|..+|..+++.+|+++||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4789999999887553 233344456889999999999999999999964
No 132
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=25.92 E-value=39 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCc
Q psy3459 149 ISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 183 (296)
Q Consensus 149 I~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~ 183 (296)
|.-|-.+|.-.|...++..|+.+|+..|++.+-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 44444556667777788999999999999876543
No 133
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.60 E-value=60 Score=31.01 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcC
Q psy3459 132 TIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181 (296)
Q Consensus 132 ~iskdAkeai~~caseFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~Lg 181 (296)
++|..++.+|.. |...|..-++..|+++|+|.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 578888888876 78889999999999999999986654
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=25.59 E-value=72 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=37.5
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCccCcccHHHHhh
Q psy3459 10 LPIANVAKIMKKAIP-ESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74 (296)
Q Consensus 10 LP~A~I~RIiK~~LP-~~~rISkDA~~al~~~a~eFI~~las~An~~a~~~~RKTI~~eDVl~AL~ 74 (296)
++...+..+++..+. .+..++.++...+.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 445556666665442 13458888888777665433333333333334333 6899999988875
No 135
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.43 E-value=91 Score=21.94 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=26.6
Q ss_pred cCCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH
Q psy3459 8 RFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEF 44 (296)
Q Consensus 8 ~~LP~A~I~RIiK~~LP~~~rISkDA~~al~~~a~eF 44 (296)
..++.++|.|++... +....||.+.+..|.+++.++
T Consensus 10 aGVS~sTVSrvLng~-~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGK-AKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTC-TTTTTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 357889999999854 111279999999888877665
No 136
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=25.41 E-value=35 Score=27.42 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=20.6
Q ss_pred CccCcccHHHHhhhcCCCcchHHHHHHHH---HHHHHhccccccchhhhhhhhh--hhhccchhhhhhhcCCCccccchH
Q psy3459 62 KTINGEDILFAMSALGFDSYVEPLKIYLQ---KYREATKGEKSVNCEVYQEISV--EDVFQSSGTILEQQNGQNETIAKD 136 (296)
Q Consensus 62 KTI~~eDVl~AL~~lgF~~yv~~l~~~L~---~~re~~k~kk~~~~e~~~~~~~--e~Lf~~s~rimk~~lp~~~~iskd 136 (296)
.++++++.+.++.......|...+++-.- .|++....-++.+++.++++.. .+||..-...+....||+ |.+
T Consensus 2 ~~m~~~e~f~gF~~~~~~~y~~Ea~eryG~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~~~~g~~p~---s~e 78 (143)
T 1ny9_A 2 INLTPEEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTASYTKEDWQRIQDEADELTRRFVALMDAGEPAD---SEG 78 (143)
T ss_dssp ------------------------------------------------CCCTTHHHHHHHHHHHHHHHHTCCTT---CHH
T ss_pred CCCCHHHHHHhcCCCcHHHHHHHHHHHhCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHH
Confidence 35677777777655444556666655433 4555555455556666655442 567777777776655555 566
Q ss_pred HHHHHHH
Q psy3459 137 ARECVQE 143 (296)
Q Consensus 137 Akeai~~ 143 (296)
|.+++.+
T Consensus 79 aq~l~~~ 85 (143)
T 1ny9_A 79 AMDAAED 85 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.22 E-value=73 Score=28.33 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=42.0
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 10 LPIANVAKIMKKAIP---ESGKIAKDARECVQECVS------EFISFITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 10 LP~A~I~RIiK~~LP---~~~rISkDA~~al~~~a~------eFI~~las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
|+...+..|++..+. .+..++.++...+.+.+. -.+.-+...|...|. +..+|+.+||..|++.+
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 345566667766432 124788988888777665 122233344555554 67899999999998775
No 138
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=23.42 E-value=54 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHhhHHHHhcCCCccCcccHHHHhhhc
Q psy3459 48 ITSEASDRCHLEKRKTINGEDILFAMSAL 76 (296)
Q Consensus 48 las~An~~a~~~~RKTI~~eDVl~AL~~l 76 (296)
|..+|.-.|...++..|+.+|+..|++..
T Consensus 53 l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 53 VCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44566666777778999999999998753
No 139
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=22.67 E-value=80 Score=24.43 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhhhhhc-CCCccccchHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3459 120 GTILEQQ-NGQNETIAKDARECVQECVSEFISFITSEASDR 159 (296)
Q Consensus 120 ~rimk~~-lp~~~~iskdAkeai~~caseFI~~lts~An~~ 159 (296)
.|++... -.++.+|++||..++++---+||.=.-..|.+-
T Consensus 8 aRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ 48 (88)
T 3v9r_B 8 IKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQS 48 (88)
T ss_dssp HHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555433 348999999999999999999997666555443
No 140
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=22.21 E-value=31 Score=24.55 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.2
Q ss_pred ccchhHhhchhhcCCccchHHH
Q psy3459 168 INGEDILFAMSALGFDSYVEPL 189 (296)
Q Consensus 168 I~~eDVl~AL~~LgF~~yv~~l 189 (296)
=|++||..-|..+||+.|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988876543
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.01 E-value=90 Score=27.39 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHHH------HHHHHHHHHhhHHhhhcCCCcccchhHhhchhhcCCc
Q psy3459 130 NETIAKDARECVQECVS------EFISFITSEASDRCHLEKRKTINGEDILFAMSALGFD 183 (296)
Q Consensus 130 ~~~iskdAkeai~~cas------eFI~~lts~An~~c~~~kRKTI~~eDVl~AL~~LgF~ 183 (296)
...++.++.+.+.+.+. ..+.-+...|...+..+++.+|+.+||-.|+.++..+
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 34678888887776654 2233355577778888899999999999999887543
No 142
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=21.98 E-value=28 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred cccchhHhhchhhcCCccchHHH
Q psy3459 167 TINGEDILFAMSALGFDSYVEPL 189 (296)
Q Consensus 167 TI~~eDVl~AL~~LgF~~yv~~l 189 (296)
.-+++||..-|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999998764
No 143
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=21.23 E-value=54 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHhhHHhhhcCCCcccchhHhhchhhc
Q psy3459 153 TSEASDRCHLEKRKTINGEDILFAMSAL 180 (296)
Q Consensus 153 ts~An~~c~~~kRKTI~~eDVl~AL~~L 180 (296)
-.+|.-.|..+++..|+.+|+..|++..
T Consensus 54 ~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 54 CTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455566666778999999999998764
Done!