RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3459
(296 letters)
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_B
Length = 128
Score = 145 bits (368), Expect = 3e-44
Identities = 39/126 (30%), Positives = 66/126 (52%)
Query: 1 MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEK 60
M R +D LP A + +++K+A+PES ++K+AR + S F F+TS ++ H +
Sbjct: 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQN 60
Query: 61 RKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSG 120
KTI +DIL ++ L F+S+V L L+ YR+ K +K + E+ S+
Sbjct: 61 HKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKKESKASKKDSNTAENANASAT 120
Query: 121 TILEQQ 126
E+
Sbjct: 121 ATAEEA 126
Score = 106 bits (265), Expect = 6e-29
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
++ +++K+AR + S F F+TS ++ H + KTI +DIL ++ L F+S+V
Sbjct: 25 ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPS 84
Query: 189 LKIYLQKYREATKGEK 204
L L+ YR+ K +K
Sbjct: 85 LTQDLEVYRKVVKEKK 100
Score = 85.8 bits (212), Expect = 4e-21
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 262
F F+TS ++ H + KTI +DIL ++ L F+S+V L L+ YR+ K +K
Sbjct: 44 FAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKKE 101
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 93
Score = 142 bits (359), Expect = 3e-43
Identities = 79/92 (85%), Positives = 87/92 (94%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
REQD +LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRK
Sbjct: 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK 61
Query: 63 TINGEDILFAMSALGFDSYVEPLKIYLQKYRE 94
TINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 62 TINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
Score = 105 bits (264), Expect = 5e-29
Identities = 61/70 (87%), Positives = 65/70 (92%)
Query: 129 QNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEP
Sbjct: 24 QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEP 83
Query: 189 LKIYLQKYRE 198
LK+YLQK+RE
Sbjct: 84 LKLYLQKFRE 93
Score = 85.3 bits (211), Expect = 3e-21
Identities = 46/53 (86%), Positives = 50/53 (94%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 41 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 135 bits (341), Expect = 2e-39
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 4 REQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKT 63
+ D +P A + K++K+ +P ++A DARE V C +EFI I+SEA++ C+ ++KT
Sbjct: 10 NDDDLTIPRAAINKMIKETLPN-VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKT 68
Query: 64 INGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTIL 123
I+ E ++ A+ +LGF SY+ +K LQ+ + + + + E+
Sbjct: 69 ISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEE--------- 119
Query: 124 EQQNGQNETIAKDARE 139
E Q E AK ++
Sbjct: 120 ELLRQQQELFAKARQQ 135
Score = 106 bits (266), Expect = 2e-28
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 31 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 90
Query: 190 KIYLQKYREATKGEKFIS 207
K LQ+ + + S
Sbjct: 91 KEVLQECKTVALKRRKAS 108
Score = 86.8 bits (214), Expect = 6e-21
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 262
FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ+ + +
Sbjct: 49 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRK 106
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A
{Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A
1a7w_A 1b6w_A 1bfm_A
Length = 68
Score = 85.8 bits (213), Expect = 7e-22
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 3 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
Query: 70 LFAMSAL 76
A
Sbjct: 61 ELARKMF 67
Score = 67.3 bits (165), Expect = 6e-15
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 131 ETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180
E ++ DAR + + + E I SEA RKTI EDI A
Sbjct: 18 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67
Score = 50.0 bits (120), Expect = 1e-08
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSAL 237
E+ I SEA RKTI EDI A
Sbjct: 33 EEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 81.7 bits (202), Expect = 3e-20
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA V ++++KA E ++++ A + + E + E+ I +A + RKT+ EDI
Sbjct: 7 LPIAPVDRLIRKAGAE--RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 64
Query: 70 LFAMSA 75
A+ +
Sbjct: 65 KLAIKS 70
Score = 63.6 bits (155), Expect = 1e-13
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 131 ETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
E +++ A + + E + E+ I +A + RKT+ EDI A+ +
Sbjct: 22 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70
Score = 47.4 bits (113), Expect = 1e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSA 236
E++ I +A + RKT+ EDI A+ +
Sbjct: 37 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 97
Score = 58.4 bits (141), Expect = 2e-11
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+A + KIMK + I+ +A + FI+ +T A KR+T+ DI
Sbjct: 20 LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 70 LFAMS 74
A++
Sbjct: 79 AMAIT 83
Score = 40.3 bits (94), Expect = 5e-05
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178
+ + + I+ +A + FI+ +T A KR+T+ DI A++
Sbjct: 30 KLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83
Score = 32.2 bits (73), Expect = 0.045
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 202 GEKFISFITSEASDRCHLEKRKTINGEDILFAMS 235
+ FI+ +T A KR+T+ DI A++
Sbjct: 50 AQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 58.2 bits (140), Expect = 8e-11
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 5 EQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLE-KRKT 63
+ FLP++ V IMK + ++G I + + +C F+ + A + +
Sbjct: 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEA 73
Query: 64 INGEDILFAMSA---LGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSG 120
+ E + ++ L F + P KI + +++E + +S + + +D + S
Sbjct: 74 LKYEHLSQVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDDDDDDDDDDEEESE 133
Query: 121 TILE 124
+ E
Sbjct: 134 SESE 137
Score = 38.9 bits (90), Expect = 4e-04
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLE-KRKTINGEDILFAMSA---L 180
+ + I + + +C F+ + A + + + E + ++ L
Sbjct: 30 KSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89
Query: 181 GFDSYVEPLKIYLQKYREATKGEK 204
F + P KI + +++E + +
Sbjct: 90 EFLLQIVPQKIRVHQFQEMLRLNR 113
Score = 34.7 bits (79), Expect = 0.013
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 202 GEKFISFITSEASDRCHLE-KRKTINGEDILFAMSA---LGFDSYVEPLKIYLQKYREAT 257
E F+ + A + + + E + ++ L F + P KI + +++E
Sbjct: 50 TELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIRVHQFQEML 109
Query: 258 KGEKSVNCEVYQEISVEDKGEKS 280
+ +S + + +D E+S
Sbjct: 110 RLNRSAGSDDDDDDDDDDDEEES 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-07
Identities = 52/345 (15%), Positives = 107/345 (31%), Gaps = 118/345 (34%)
Query: 6 QDRFLPIANVAKIMKKAIPES--GKIAKDARECVQECVSEFISFITSEASDR-------- 55
Q++F K +PE G A D E V +F+ +++S
Sbjct: 34 QEQFN----------KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 56 -----CHLEKRKTINGEDI-LFAMSALGFDSYVEP-----LKIYLQK------------- 91
E + G DI A L + +K Y+
Sbjct: 84 LNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 92 ---YREATKGEKSV--------NCEVY-QEISVEDVFQSSGTILEQQNGQNETIAKDARE 139
+R +G + N + Y +E+ D++Q+ ++ + K + E
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGD-------LIKFSAE 193
Query: 140 CVQECVSEFISFITSEASDRCH---------LEKRKTINGEDILFAMSALGFDSYVEPLK 190
+ E + T+ +++ LE +D L + PL
Sbjct: 194 TLSELIR------TTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPISC-----PL- 240
Query: 191 IYL-QKYREATKGEKFISF-ITSEASDRCHLEKRK-----TINGEDILFAM---SALGFD 240
I + Q + +T++ E R T + + ++ A+ ++
Sbjct: 241 IGVIQ----------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 241 SYVEPLKIYLQK-----YR--EATKGEKSVNCEVYQEISVEDKGE 278
S+ ++ + R EA S+ + ++ S+E+ E
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILED-SLEN-NE 332
Score = 31.6 bits (71), Expect = 0.38
Identities = 21/114 (18%), Positives = 27/114 (23%), Gaps = 46/114 (40%)
Query: 2 PLRE-----QDRFLPIANVA----KIMKKA---------------------IP----ESG 27
P E +RFLP+A + ++ A IP G
Sbjct: 408 PFSERKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDIL-F---AMSALG 77
D R + I E IL F S LG
Sbjct: 466 ---SDLRVLSGSISERIVDCIIRL---PVKWETTTQFKATHILDFGPGGASGLG 513
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 45.0 bits (106), Expect = 2e-06
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
+ + + +I + + +DA + V++C + I+S+ RKT+ D+
Sbjct: 8 IASSLIKQIFSHYVKT--PVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADV 65
Query: 70 LFAMSALGFDSYVEPLKIYLQKY 92
M G + PL + ++++
Sbjct: 66 ELLMRRQGLVTDKMPLHVLVERH 88
Score = 40.4 bits (94), Expect = 9e-05
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSY 185
+ + +DA + V++C + I+S+ RKT+ D+ M G +
Sbjct: 18 SHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTD 77
Query: 186 VEPLKIYLQKY 196
PL + ++++
Sbjct: 78 KMPLHVLVERH 88
Score = 30.7 bits (69), Expect = 0.20
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKY 253
E++ I+S+ RKT+ D+ M G + PL + ++++
Sbjct: 38 ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERH 88
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B,
tata-DNA, transcription initiation, NC2, negative
cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 98
Score = 43.0 bits (101), Expect = 8e-06
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1 MPLREQDRF--LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHL 58
MP +++ P A + KIM+ E GK+A + + F+ + +A
Sbjct: 1 MPSKKKKYNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQS 59
Query: 59 EKRKTINGEDI 69
KT+ +
Sbjct: 60 RNAKTMTTSHL 70
Score = 28.7 bits (64), Expect = 0.66
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 173
Q + + +A + + F+ + +A KT+ +
Sbjct: 22 QTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Score = 27.6 bits (61), Expect = 1.9
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDI 230
E F+ + +A KT+ +
Sbjct: 43 ELFLESLLKKACQVTQSRNAKTMTTSHL 70
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding
protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP:
a.22.1.2
Length = 154
Score = 34.4 bits (78), Expect = 0.016
Identities = 29/169 (17%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A + +I ++ I E ++++DA++ + + V ++ + A +KT+ E +
Sbjct: 5 LPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 63
Query: 70 LFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQ 129
L +G + + E++ +V + + +G
Sbjct: 64 KALADVL------------------MVEGVEDYDGELFGRATVRRILKRAGI-------- 97
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178
E + DA + + + + +A++ + RKT+ GED+ A++
Sbjct: 98 -ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 32.3 bits (73), Expect = 0.046
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77
+I+ E V+ + F+ + +A KRKT+ D+++A+ G
Sbjct: 46 RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95
Score = 31.6 bits (71), Expect = 0.090
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+ E V+ + F+ + +A KRKT+ D+++A+ G
Sbjct: 47 ISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA
binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1
PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 30.9 bits (70), Expect = 0.098
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 14 NVAKIMKKAIP----ESG--KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGE 67
N+ I K AI G +I+ E + + F+ + +A KRKT+
Sbjct: 7 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAM 66
Query: 68 DILFAMSALG 77
D+++A+ G
Sbjct: 67 DVVYALKRQG 76
Score = 29.8 bits (67), Expect = 0.25
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+ E + + F+ + +A KRKT+ D+++A+ G
Sbjct: 28 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 76
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 30.0 bits (67), Expect = 0.27
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 12 IANVAKIMKKAIPESG---KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGED 68
I + K + + G +I+ E V+ + F+ + ++ KRKT+ D
Sbjct: 26 IQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLD 85
Query: 69 ILFAMSALG 77
+++A+ G
Sbjct: 86 VVYALKRQG 94
Score = 29.2 bits (65), Expect = 0.60
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+ E V+ + F+ + ++ KRKT+ D+++A+ G
Sbjct: 46 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B
3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B
3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 29.9 bits (67), Expect = 0.30
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 11 PIANVAKIMKKAIPESG---KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGE 67
I + K + + G +I+ E + + F+ + +A KRKT+
Sbjct: 26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAM 85
Query: 68 DILFAMSALG 77
D+++A+ G
Sbjct: 86 DVVYALKRQG 95
Score = 28.8 bits (64), Expect = 0.66
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+ E + + F+ + +A KRKT+ D+++A+ G
Sbjct: 47 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A
3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A*
1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Length = 136
Score = 29.6 bits (65), Expect = 0.70
Identities = 14/66 (21%), Positives = 23/66 (34%)
Query: 116 FQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILF 175
FQ + Q + A +QE ++ + + + KR TI +DI
Sbjct: 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
Query: 176 AMSALG 181
A G
Sbjct: 128 ARRIRG 133
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair,
histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB:
4drb_A
Length = 113
Score = 28.9 bits (64), Expect = 0.95
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 124 EQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177
E + +K + E + KR TIN ED+
Sbjct: 39 EVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLA 92
Score = 28.5 bits (63), Expect = 1.1
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 15 VAKI-MKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73
V + + A+ + + +K + E + KR TIN ED+
Sbjct: 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLA 92
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 29.9 bits (68), Expect = 0.95
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
+ D+ +P K+ + I +
Sbjct: 220 DGDQIVPFETTGKVAAELIKGA 241
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 29.8 bits (67), Expect = 1.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
DR LPI N A++ KA+P +
Sbjct: 227 TGDRTLPIENTARVFHKALPSA 248
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
DR LPI N A++ KA+P +
Sbjct: 226 TGDRTLPIENTARVFHKALPSA 247
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 29.2 bits (66), Expect = 1.4
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
D+ +P A+ A + + +
Sbjct: 224 TDDQVVPYADAAPKSAELLANA 245
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 28.9 bits (65), Expect = 1.8
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
+ D+ +PI + + IP +
Sbjct: 221 DDDQVVPIDATGRKSAQIIPNA 242
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits;
transcription/TBP-associated factors, TBP-associated
factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Length = 76
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 123 LEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177
L ++ NE + +D E + + +FI + + A K T+ +D+ +
Sbjct: 14 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 68
Score = 25.1 bits (55), Expect = 8.7
Identities = 8/55 (14%), Positives = 24/55 (43%)
Query: 19 MKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73
+ + + + ++ +D E + + +FI + + A K T+ +D+ +
Sbjct: 14 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 68
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 28.1 bits (63), Expect = 3.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
+D LPI A+ +A+PE+
Sbjct: 228 TKDNILPIDATARRFHQAVPEA 249
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 28 KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 77
+I+ E V+ + F+ + ++ KRKT+ D+++A+ G
Sbjct: 178 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I+ E V+ + F+ + ++ KRKT+ D+++A+ G
Sbjct: 179 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.1 bits (63), Expect = 3.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 EQDRFLPIANVAKIMKKAIPES 26
+ D +P K+ +AIP S
Sbjct: 230 DSDATVPFEYSGKLTHEAIPNS 251
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA,
nucleus, DNA binding protein; 2.15A {Gallus gallus}
Length = 107
Score = 26.5 bits (58), Expect = 5.6
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 15 VAKIMKKAIPESG-KIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73
+ + + G +K + E + KR TI ED+
Sbjct: 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLA 84
Score = 26.1 bits (57), Expect = 7.6
Identities = 8/54 (14%), Positives = 14/54 (25%)
Query: 124 EQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177
+ + +K + E + KR TI ED+
Sbjct: 31 DVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLA 84
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 27.5 bits (60), Expect = 5.6
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 20 KKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTIN 65
K++I E I K+ + + E + +++ + ++ +K
Sbjct: 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYL 472
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 15 VAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 74
+ ++K+ P++G I+ A + V++ I +EAS H KR TI +I A+
Sbjct: 39 IYTVLKQVHPDTG-ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97
Query: 75 AL 76
L
Sbjct: 98 LL 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.367
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,251,406
Number of extensions: 239531
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 65
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)