RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3459
(296 letters)
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 111 bits (280), Expect = 5e-32
Identities = 31/89 (34%), Positives = 53/89 (59%)
Query: 11 PIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDIL 70
P A + +++K+A+PES ++K+AR + S F F+TS ++ H + KTI +DIL
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 71 FAMSALGFDSYVEPLKIYLQKYREATKGE 99
++ L F+S+V L L+ YR+ K +
Sbjct: 61 QTLTELDFESFVPSLTQDLEVYRKVVKEK 89
Score = 88.0 bits (218), Expect = 7e-23
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 133 IAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIY 192
++K+AR + S F F+TS ++ H + KTI +DIL ++ L F+S+V L
Sbjct: 19 VSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQD 78
Query: 193 LQKYREATKGE 203
L+ YR+ K +
Sbjct: 79 LEVYRKVVKEK 89
Score = 71.0 bits (174), Expect = 2e-16
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGE 260
F F+TS ++ H + KTI +DIL ++ L F+S+V L L+ YR+ K +
Sbjct: 32 SVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEK 89
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 107 bits (268), Expect = 4e-30
Identities = 75/86 (87%), Positives = 83/86 (96%)
Query: 9 FLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGED 68
+LPIANVA+IMK AIP++GKIAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGED
Sbjct: 2 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGED 61
Query: 69 ILFAMSALGFDSYVEPLKIYLQKYRE 94
ILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 62 ILFAMSTLGFDSYVEPLKLYLQKFRE 87
Score = 81.0 bits (200), Expect = 3e-20
Identities = 62/77 (80%), Positives = 68/77 (88%)
Query: 122 ILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
I++ Q IAKDA+ECVQECVSEFISFITSEAS+RCH EKRKTINGEDILFAMS LG
Sbjct: 11 IMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 70
Query: 182 FDSYVEPLKIYLQKYRE 198
FDSYVEPLK+YLQK+RE
Sbjct: 71 FDSYVEPLKLYLQKFRE 87
Score = 63.7 bits (155), Expect = 7e-14
Identities = 46/53 (86%), Positives = 50/53 (94%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYRE 255
+FISFITSEAS+RCH EKRKTINGEDILFAMS LGFDSYVEPLK+YLQK+RE
Sbjct: 35 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 87
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 107 bits (268), Expect = 1e-29
Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 7 DRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTING 66
D +P A + K++K+ +P ++A DARE V C +EFI I+SEA++ C+ ++KTI+
Sbjct: 2 DLTIPRAAINKMIKETLPN-VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 60
Query: 67 EDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQ 126
E ++ A+ +LGF SY+ +K LQ+ + + + ++ G E+
Sbjct: 61 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKAS----------SRLENLGIPEEEL 110
Query: 127 NGQNETIAKDARE 139
Q + + AR+
Sbjct: 111 LRQQQELFAKARQ 123
Score = 84.2 bits (208), Expect = 8e-21
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPL 189
N +A DARE V C +EFI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +
Sbjct: 20 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 79
Query: 190 KIYLQKYREATKGEK 204
K LQ+ + +
Sbjct: 80 KEVLQECKTVALKRR 94
Score = 67.6 bits (165), Expect = 1e-14
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKS 262
+FI I+SEA++ C+ ++KTI+ E ++ A+ +LGF SY+ +K LQ+ + +
Sbjct: 36 TEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRK 95
Query: 263 VN 264
+
Sbjct: 96 AS 97
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 106 bits (266), Expect = 4e-29
Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP A + +I ++ I E +++DA++ + + V ++ + A +KT+ E +
Sbjct: 2 LPKAAIERIFRQGIGERR-LSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 70 LFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQ 129
L + + + V + + +G
Sbjct: 61 KALADVLMVEGVEDYDGELFGRAT------------------VRRILKRAG--------- 93
Query: 130 NETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178
E + DA + + + + +A++ + RKT+ GED+ A++
Sbjct: 94 IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 142
Score = 76.0 bits (187), Expect = 1e-17
Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 20/131 (15%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDS 184
+Q +++DA++ + + V ++ + A +KT+ E + L +
Sbjct: 12 RQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 71
Query: 185 YVEPLKIYLQK---YREATKG-----------------EKFISFITSEASDRCHLEKRKT 224
+ + R + + + +A++ + RKT
Sbjct: 72 VEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKT 131
Query: 225 INGEDILFAMS 235
+ GED+ A++
Sbjct: 132 VQGEDVEKAIT 142
Score = 37.5 bits (87), Expect = 4e-04
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALG 238
++ + A +KT+ E + L
Sbjct: 33 PTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 68
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 72.5 bits (178), Expect = 3e-17
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA V ++++KA E ++++ A + + E + E+ I +A + RKT+ EDI
Sbjct: 3 LPIAPVDRLIRKAGAE--RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 70 LFAMSA 75
A+ +
Sbjct: 61 KLAIKS 66
Score = 55.5 bits (134), Expect = 4e-11
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSA 179
+ E +++ A + + E + E+ I +A + RKT+ EDI A+ +
Sbjct: 13 RKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 66
Score = 41.7 bits (98), Expect = 3e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSA 236
E++ I +A + RKT+ EDI A+ +
Sbjct: 33 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 66
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 72.1 bits (177), Expect = 4e-17
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LPIA + +I+K A E +++ DAR + + + E I SEA RKTI EDI
Sbjct: 4 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
Query: 70 LFAMSAL 76
A
Sbjct: 62 ELARKMF 68
Score = 55.5 bits (134), Expect = 4e-11
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSAL 180
+N E ++ DAR + + + E I SEA RKTI EDI A
Sbjct: 14 KNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
Score = 40.1 bits (94), Expect = 1e-05
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSAL 237
E+ I SEA RKTI EDI A
Sbjct: 34 EEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 69.4 bits (170), Expect = 4e-16
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
P A + KIM+ E GK+A + + F+ + +A KT+ +
Sbjct: 3 FPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 70 LFAM 73
+
Sbjct: 62 KQCI 65
Score = 51.7 bits (124), Expect = 9e-10
Identities = 6/53 (11%), Positives = 17/53 (32%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177
Q + + +A + + F+ + +A KT+ + +
Sbjct: 13 QTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
Score = 35.1 bits (81), Expect = 8e-04
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 205 FISFITSEASDRCHLEKRKTINGEDILFAM 234
F+ + +A KT+ + +
Sbjct: 36 FLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 65.6 bits (160), Expect = 1e-14
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+A + KIMK + I+ +A + FI+ +T A KR+T+ DI
Sbjct: 1 LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 59
Query: 70 LFAMS 74
A++
Sbjct: 60 AMAIT 64
Score = 48.7 bits (116), Expect = 2e-08
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 125 QQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMS 178
+ + + I+ +A + FI+ +T A KR+T+ DI A++
Sbjct: 11 KLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
Score = 36.0 bits (83), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMS 235
+ FI+ +T A KR+T+ DI A++
Sbjct: 32 QIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 44.8 bits (106), Expect = 4e-07
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 3 LREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRK 62
LR+ + + + ++ ++ +I+ E + + F+ + +A KRK
Sbjct: 3 LRDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK 60
Query: 63 TINGEDILFAMSALG 77
T+ D+++A+ G
Sbjct: 61 TVTAMDVVYALKRQG 75
Score = 42.1 bits (99), Expect = 4e-06
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALG 181
+ G + I+ E + + F+ + +A KRKT+ D+++A+ G
Sbjct: 20 RRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 75
Score = 34.7 bits (80), Expect = 0.002
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 203 EKFISFITSEASDRCHLEKRKTINGEDILFAMSALG 238
+ F+ + +A KRKT+ D+++A+ G
Sbjct: 40 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 75
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (69), Expect = 0.16
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 10 LPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
LP+ + ++K+ + KI + + + I A + + I +DI
Sbjct: 100 LPVEKIHPLLKEVLGY--KIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDI 157
Query: 70 LFAM 73
AM
Sbjct: 158 KVAM 161
>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
[TaxId: 10991]}
Length = 268
Score = 29.9 bits (67), Expect = 0.32
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 32 DARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 84
D R +Q + F+SFITS +DRC RKT D +S +Y+ P
Sbjct: 56 DPRVPLQTMSNMFVSFITS--TDRCGYMLRKTWFNSDTKPTVSDDFITTYIRP 106
Score = 29.9 bits (67), Expect = 0.32
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 136 DARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEP 188
D R +Q + F+SFITS +DRC RKT D +S +Y+ P
Sbjct: 56 DPRVPLQTMSNMFVSFITS--TDRCGYMLRKTWFNSDTKPTVSDDFITTYIRP 106
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 27.0 bits (60), Expect = 0.97
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 VAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 69
V K++K+ P++G I+ A + V++ I EAS H KR TI +I
Sbjct: 9 VYKVLKQVHPDTG-ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 62
Score = 25.5 bits (56), Expect = 2.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 126 QNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDI 173
Q + I+ A + V++ I EAS H KR TI +I
Sbjct: 15 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 62
Score = 24.3 bits (53), Expect = 8.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 209 ITSEASDRCHLEKRKTINGEDI 230
I EAS H KR TI +I
Sbjct: 41 IAGEASRLAHYNKRSTITSREI 62
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 26.6 bits (59), Expect = 1.0
Identities = 8/53 (15%), Positives = 23/53 (43%)
Query: 21 KAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 73
+ + + ++ +D E + + +FI + + A K T+ +D+ +
Sbjct: 14 REVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 66
Score = 26.6 bits (59), Expect = 1.1
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 123 LEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAM 177
L ++ NE + +D E + + +FI + + A K T+ +D+ +
Sbjct: 12 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 66
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 25.5 bits (56), Expect = 3.5
Identities = 14/70 (20%), Positives = 26/70 (37%)
Query: 8 RFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGE 67
R LP + + + + + A +QE ++ + + + KR TI +
Sbjct: 23 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 82
Query: 68 DILFAMSALG 77
DI A G
Sbjct: 83 DIQLARRIRG 92
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 24.7 bits (54), Expect = 3.7
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 21 KAIPESGKIAKDARECVQECVSEFISFITSEASDRCHL-EKRKTINGEDI 69
K+ ++G I + + +C F+ + A + + E +
Sbjct: 2 KSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHL 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.367
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,031,980
Number of extensions: 45028
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 42
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)