Diaphorina citri psyllid: psy3459


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDKGEKSVNCEVYQEISVEDVFQ
cccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHccccHHccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
*PLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKFISFITS**SDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVED****SVNCEVYQEI*******
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MPLREQDRFLPIANVAKIMKKAIPESGKIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDVFQSSGTILEQQNGQNETIAKDARECVQECVSEFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKFISFITSEASDRCHLEKRKTINGEDILFAMSALGFDSYVEPLKIYLQKYREATKGEKSVNCEVYQEISVEDKGEKSVNCEVYQEISVEDVFQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Nuclear transcription factor Y subunit beta Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.confidentP63139
Nuclear transcription factor Y subunit beta Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.confidentP25207
Nuclear transcription factor Y subunit beta Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.confidentQ6RG77

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0016602 [CC]CCAAT-binding factor complexprobableGO:0031974, GO:0043229, GO:0043227, GO:0043226, GO:0005575, GO:0031981, GO:0005634, GO:0005654, GO:0044451, GO:0043234, GO:0032991, GO:0043231, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0070013, GO:0044428, GO:0005667, GO:0044424, GO:0044422
GO:0001077 [MF]RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcriptionprobableGO:0003700, GO:0001228, GO:0003674, GO:0001071, GO:0000982, GO:0000981
GO:0071280 [BP]cellular response to copper ionprobableGO:0051716, GO:0071248, GO:0010038, GO:0046688, GO:0050896, GO:0009987, GO:0071241, GO:0008150, GO:0044763, GO:0070887, GO:0042221, GO:0010035, GO:0044699
GO:0000978 [MF]RNA polymerase II core promoter proximal region sequence-specific DNA bindingprobableGO:0044212, GO:0043565, GO:0001067, GO:0003677, GO:0001012, GO:0001159, GO:0000976, GO:0000977, GO:0003676, GO:0000975, GO:0000987, GO:0003674, GO:0097159, GO:1901363, GO:0005488
GO:0006351 [BP]transcription, DNA-dependentprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0019438
GO:0035690 [BP]cellular response to drugprobableGO:0051716, GO:0050896, GO:0009987, GO:0042493, GO:0008150, GO:0044763, GO:0070887, GO:0042221, GO:0044699
GO:0000436 [BP]carbon catabolite activation of transcription from RNA polymerase II promoterprobableGO:0009991, GO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:0051173, GO:0031323, GO:0051254, GO:0010628, GO:0070887, GO:0007154, GO:0050789, GO:0044699, GO:0031667, GO:0051716, GO:0010604, GO:0031670, GO:0051171, GO:0009891, GO:2000112, GO:0019219, GO:0006357, GO:0065007, GO:0048518, GO:0010468, GO:0071496, GO:0045935, GO:0060255, GO:0007584, GO:0009987, GO:0009889, GO:0050794, GO:0045991, GO:0045990, GO:0044763, GO:0045893, GO:2001141, GO:0042221, GO:0031668, GO:0031669, GO:0009605, GO:0080090, GO:0050896, GO:0051252, GO:0000429, GO:0006355, GO:0010557, GO:0010556, GO:0045944, GO:0008150, GO:0048522
GO:0070491 [MF]repressing transcription factor bindingprobableGO:0008134, GO:0003674, GO:0005488, GO:0005515
GO:0046982 [MF]protein heterodimerization activityprobableGO:0046983, GO:0003674, GO:0005488, GO:0005515

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1JFI, chain B
Confidence level:very confident
Coverage over the Query: 6-120
View the alignment between query and template
View the model in PyMOL
Template: 1JFI, chain B
Confidence level:very confident
Coverage over the Query: 118-238
View the alignment between query and template
View the model in PyMOL
Template: 4AWL, chain B
Confidence level:probable
Coverage over the Query: 3-94
View the alignment between query and template
View the model in PyMOL