RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy346
(87 letters)
>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase
{Azoarcus sp. ebn1 [TaxId: 76114]}
Length = 247
Score = 59.5 bits (144), Expect = 5e-13
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
L++ DVS + + F R ++LVN AGI F +LT + +++ F++N+
Sbjct: 55 LTVKCDVSQPGDVEAFGKQVISTFGRC-DILVNNAGIYPLIPFDELTFEQWKKTFEINVD 113
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 59.5 bits (144), Expect = 6e-13
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+D+ + + R +VLVN A I L + ++++V +VNL
Sbjct: 53 FQVDLEDERERVRFVEEAAYALGRV-DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 109
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 59.3 bits (143), Expect = 8e-13
Identities = 16/76 (21%), Positives = 23/76 (30%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLV 70
D S M + F ++L+N G R L T +DF NL+
Sbjct: 62 SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 121
Query: 71 DRRGGTAGKVCLDFGH 86
A + G
Sbjct: 122 YHLSQLAHPLLKASGC 137
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 57.7 bits (139), Expect = 3e-12
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
+ D+S+ S M+ + F N+LVN AGI T +D+ + +N
Sbjct: 59 VEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINF 118
Query: 68 K 68
+
Sbjct: 119 E 119
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 51.5 bits (123), Expect = 5e-10
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
T + D+SN I + SAI+ + S ++ +N AG+ R + L + ++ +F
Sbjct: 59 YPGTLIPYRCDLSNEEDILSMFSAIRSQHSGV-DICINNAGLARPDTLLSGSTSGWKDMF 117
Query: 64 DVNLK 68
+VN+
Sbjct: 118 NVNVL 122
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 251
Score = 50.4 bits (120), Expect = 1e-09
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
++ DVSN + + A+KEKF + + +VN AGI R + + +F+QV +VNL
Sbjct: 57 TMAFRCDVSNYEEVKKLLEAVKEKFGKL-DTVVNAAGINRRHPAEEFPLDEFRQVIEVNL 115
>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 253
Score = 48.4 bits (115), Expect = 7e-09
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
+ + DVS+ + + M+A++ + NVLVN AGI +DF ++ +N
Sbjct: 54 SMFVRHDVSSEADWTLVMAAVQRRLGTL-NVLVNNAGILLPGDMETGRLEDFSRLLKINT 112
Query: 68 K 68
+
Sbjct: 113 E 113
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 48.4 bits (115), Expect = 8e-09
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGI----TRDNWFLKLTEKDFQQVFD 64
S+ DV+ + +S KF + ++LVN AG ++ + + + +
Sbjct: 60 NSVVADVTTDAGQDEILSTTLGKFGKL-DILVNNAGAAIPDSQSKTGTAQSIESYDATLN 118
Query: 65 VNLKLV 70
+NL+ V
Sbjct: 119 LNLRSV 124
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 48.1 bits (114), Expect = 1e-08
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRD-NWFLKLTEKDFQQVFDVNLKLV 70
+ + + A+ + + +VLV+ + K +D++ +
Sbjct: 51 KPMSEQEPAELIEAVTSAYGQV-DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRP 107
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 46.3 bits (109), Expect = 4e-08
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
D+ + + M + F N+LVN AG+ TEKD+ + N
Sbjct: 57 VEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNF 116
Query: 68 KLV 70
+
Sbjct: 117 EAA 119
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 45.4 bits (107), Expect = 8e-08
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTE----KDFQQVFD 64
S+ DV+ +++ ++F + +VLVN AG + F + +
Sbjct: 60 NSVVADVTTEDGQDQIINSTLKQFGKI-DVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLK 118
Query: 65 VNLK 68
+NL+
Sbjct: 119 LNLQ 122
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 44.9 bits (105), Expect = 1e-07
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+D+ + +I +++++ +VLVN AGI + N
Sbjct: 58 HQLDIDDLQSIRALRDFLRKEYG-GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFF 114
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase
{Lactobacillus brevis [TaxId: 1580]}
Length = 251
Score = 43.8 bits (103), Expect = 3e-07
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
D S+ + A ++ F + LVN AGI + + T +++++ VNL
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPV-STLVNNAGIAVNKSVEETTTAEWRKLLAVNLD 115
>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 302
Score = 43.4 bits (102), Expect = 4e-07
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 8 HLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNL 67
+ + + + F R +V+VN AGI RD F +++++D+ + V+L
Sbjct: 64 GGKAVANYDSVEAGEKLVKTALDTFGRI-DVVVNNAGILRDRSFSRISDEDWDIIQRVHL 122
Query: 68 KLVDR 72
+ +
Sbjct: 123 RGSFQ 127
>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 41.8 bits (98), Expect = 1e-06
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ + DV+ + T +S +F R V+ N + + + F+Q+ ++NL
Sbjct: 54 VFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLL 113
>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 242
Score = 41.5 bits (97), Expect = 2e-06
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 10 SLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +D+ + A+ I P ++LVN A + FL++T++ F + F VNL+
Sbjct: 54 PVCVDLGDWDATEKALGGIG-----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLR 107
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 244
Score = 40.7 bits (95), Expect = 4e-06
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +D SN I ++ +K + ++LVN AG+ + + ++ F+VN+
Sbjct: 59 HTFVVDCSNREDIYSSAKKVKAEIGDV-SILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 117
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 40.8 bits (95), Expect = 4e-06
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCA--GITRDNWFLKLTEKDFQQVFDVNLK 68
+ DV+ S ++ KF + ++LVN A + + +Q+ F +N +
Sbjct: 61 VVADVTEASGQDDIINTTLAKFGKI-DILVNNAGANLADGTANTDQPVELYQKTFKLNFQ 119
Query: 69 LVDRRGGTAGKVCLDFGH 86
V + +
Sbjct: 120 AVIEMTQKTKEHLIKTKG 137
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 40.4 bits (94), Expect = 4e-06
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 9 LSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ D+++ +S K + ++LVN AG F + DF++ +++N+
Sbjct: 63 FACRCDITSEQELSALADFAISKLGKV-DILVNNAGGGGPKPF-DMPMADFRRAYELNVF 120
>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermus thermophilus [TaxId: 274]}
Length = 242
Score = 39.2 bits (91), Expect = 1e-05
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLV 70
+ MDV++ +++ + R + +V+ AGITRDN+ K+ +D++ V VNL
Sbjct: 54 VVMDVADPASVERGFAEALAHLGRL-DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGS 112
Query: 71 DR 72
Sbjct: 113 FL 114
>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 244
Score = 38.5 bits (89), Expect = 2e-05
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ +DV+ + A+ F +VLVN AGI ++Q++ DVNL
Sbjct: 57 VHLDVTQPAQWKAAVDTAVTAFGGL-HVLVNNAGILNIGTIEDYALTEWQRILDVNLT 113
>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase,
PGDH {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 38.1 bits (88), Expect = 3e-05
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVF 63
L + DV++ + + + F ++LVN AG+ + ++++
Sbjct: 52 EPQKTLFIQCDVADQQQLRDTFRKVVDHFG-RLDILVNNAGVNNEK--------NWEKTL 102
Query: 64 DVNLK 68
+NL
Sbjct: 103 QINLV 107
>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
{Pseudomonas sp., lb400 [TaxId: 306]}
Length = 276
Score = 37.3 bits (86), Expect = 5e-05
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 7 THLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITR-----DNWFLKLTEKDFQQ 61
L + DV + A S +F + L+ AGI + + + F +
Sbjct: 52 NVLGIVGDVRSLEDQKQAASRCVARFG-KIDTLIPNAGIWDYSTALVDLPEESLDAAFDE 110
Query: 62 VFDVNLK 68
VF +N+K
Sbjct: 111 VFHINVK 117
>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 257
Score = 36.8 bits (84), Expect = 8e-05
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLVDRR 73
D+S A++ + K S+ + LV CAG+ K V VN
Sbjct: 41 DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQ-------TKVLGNVVSVNYFGATEL 93
Query: 74 GGTAGKVCLDFGH 86
Sbjct: 94 MDAFLPALKKGHQ 106
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 36.6 bits (84), Expect = 1e-04
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 11 LPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCA--GITRDNWFLKLTEKDFQQVFDVNLK 68
+ DV+ + + K + +++ T L+ +DF++V D+N+
Sbjct: 59 VHCDVTKDEDVRNLVDTTIAKHGK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVY 117
Query: 69 LVDRRGGTAGKVCLDFGH 86
A +V +
Sbjct: 118 GAFLVAKHAARVMIPAKK 135
>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member
6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 33.5 bits (76), Expect = 0.001
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 36 PNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLVDR 72
+VL N AG L EKD+ ++N++ +
Sbjct: 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYL 111
>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum
[TaxId: 144185]}
Length = 258
Score = 32.4 bits (73), Expect = 0.004
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 GSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGIT-RDNWFLKLTEKDFQQV 62
+ L+ DVS+ + + ++A E+F R + N AGI + N T +F +V
Sbjct: 53 PDAEVLTTVADVSDEAQVEAYVTATTERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKV 111
Query: 63 F 63
Sbjct: 112 V 112
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 234
Score = 30.4 bits (68), Expect = 0.015
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 21 ISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
+ + + EK ++LV AG + +F +LT +DF++ D
Sbjct: 53 LRKDLDLLFEKVKEV-DILVLNAGGPKAGFFDELTNEDFKEAIDSL 97
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 30.4 bits (68), Expect = 0.018
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 11 LPMDVSN-TSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
DV+ + + I ++ + ++L+N AGI D ++ +N
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQL-KTVDILINGAGILDD--------HQIERTIAINFT 109
>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Trypanosoma cruzi [TaxId: 5693]}
Length = 266
Score = 28.3 bits (62), Expect = 0.10
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 14 DVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVN 66
S + F R +VLVN A L + +
Sbjct: 64 SSSLLDCCEDIIDCSFRAFGRC-DVLVNNASAYYPTPLLPGDDTNGAADAKPI 115
>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
{Prochlorococcus marinus [TaxId: 1219]}
Length = 122
Score = 24.7 bits (54), Expect = 1.2
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 42 CAGITRDNWFLKLTEKDFQQVFDVNLKLVD 71
I + W ++L + +++ + +V ++L D
Sbjct: 21 STLIGGETWAIELDKSEWKILVEVVMELCD 50
>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 121
Score = 23.5 bits (51), Expect = 3.1
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 42 CAGITRDNWFLKLTEKDFQQVFDVNLKLVD 71
+ +W ++LT + + +L +
Sbjct: 23 PGLVGTTDWAVELTAAEMADFCRLVQQLAE 52
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase
GlvA {Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 23.8 bits (51), Expect = 3.9
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 37 NVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLVDRRG 74
+ V G+ W+ + +++ + + V + G
Sbjct: 23 EMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYG 60
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 23.3 bits (50), Expect = 3.9
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 2 LTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQ 61
+T ++T + +++ ++ + + D +LT+ +
Sbjct: 9 ITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA-KS 67
Query: 62 VFDVNLK------LVDRRGGT 76
+ D+ ++ VD GG
Sbjct: 68 LKDLGVRDGYRIHAVDVTGGN 88
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
[TaxId: 1515]}
Length = 340
Score = 23.4 bits (49), Expect = 4.8
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 37 NVLVNCAGITRDNWFLKLTEKDFQQVFDVNLKLV 70
+ +++++ +TEKD + + + V
Sbjct: 12 GWISQYQVFSKEHFDTFITEKDIETIAEAGFDHV 45
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 22.9 bits (49), Expect = 5.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 MLTGSSTHLSLPMDVSNTSTISTAMSAIKEKFSRPPN 37
+ +T + D +ST+ ++ RPP+
Sbjct: 6 IRRHKTT---IFTDAKESSTVFELKRIVEGILKRPPD 39
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 23.0 bits (49), Expect = 5.7
Identities = 6/56 (10%), Positives = 19/56 (33%)
Query: 13 MDVSNTSTISTAMSAIKEKFSRPPNVLVNCAGITRDNWFLKLTEKDFQQVFDVNLK 68
+ ++ T+ + P + L+ ++ E D Q + +++
Sbjct: 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVE 82
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 22.4 bits (48), Expect = 5.8
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 18 TSTISTAMSAIKEKFSRPPNVLVNCAGITRD 48
+ T++ I ++ + N+L+NC + D
Sbjct: 52 SITLTEEEEVIIQRLGKSANLLLNCELVKLD 82
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 21.8 bits (46), Expect = 10.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 10 SLPMDVSNTSTISTAMSAIKEKFSRPPN 37
+ +D+ T TI ++EK PP
Sbjct: 12 EIEIDIEPTDTIDRIKERVEEKEGIPPV 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.394
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 303,427
Number of extensions: 11140
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 40
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)