Query psy3460
Match_columns 153
No_of_seqs 131 out of 741
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:17:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0709|consensus 99.9 4.2E-24 9.2E-29 190.3 10.3 107 8-114 218-324 (472)
2 smart00338 BRLZ basic region l 99.6 2.3E-14 5E-19 96.7 9.1 63 38-100 2-64 (65)
3 PF00170 bZIP_1: bZIP transcri 99.5 1.8E-13 3.9E-18 92.2 9.3 63 37-99 1-63 (64)
4 KOG3584|consensus 99.4 1.1E-12 2.5E-17 112.4 7.7 65 31-109 281-345 (348)
5 KOG4343|consensus 99.4 3.2E-12 7E-17 116.6 9.4 67 31-104 271-337 (655)
6 KOG4005|consensus 99.3 1.1E-11 2.4E-16 104.0 10.4 61 39-99 67-127 (292)
7 PF07716 bZIP_2: Basic region 99.2 7.5E-11 1.6E-15 77.3 8.6 52 39-91 3-54 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.8 5.7E-11 1.2E-15 85.6 -6.1 71 30-100 19-89 (92)
9 KOG3863|consensus 98.8 3E-08 6.5E-13 91.9 9.5 114 10-124 444-573 (604)
10 KOG0837|consensus 98.5 6.5E-07 1.4E-11 76.1 9.5 68 32-99 197-264 (279)
11 KOG4571|consensus 98.2 1.3E-05 2.8E-10 69.1 9.5 63 41-103 226-289 (294)
12 KOG4196|consensus 97.9 0.00069 1.5E-08 52.5 13.3 69 32-107 44-112 (135)
13 KOG3119|consensus 97.7 0.00029 6.2E-09 59.8 9.0 65 36-100 189-253 (269)
14 PF06156 DUF972: Protein of un 95.5 0.098 2.1E-06 39.0 7.7 49 62-110 8-56 (107)
15 KOG1414|consensus 95.5 0.00066 1.4E-08 60.2 -4.8 65 36-100 149-217 (395)
16 PRK13169 DNA replication intia 95.0 0.17 3.8E-06 38.0 7.8 48 62-109 8-55 (110)
17 PF08172 CASP_C: CASP C termin 94.8 0.15 3.2E-06 43.1 7.6 51 57-107 88-138 (248)
18 PF06005 DUF904: Protein of un 94.6 0.37 8E-06 33.6 8.0 46 62-107 18-63 (72)
19 KOG4005|consensus 94.1 0.35 7.5E-06 41.5 8.4 74 32-105 64-140 (292)
20 PRK10884 SH3 domain-containing 93.0 2.5 5.4E-05 34.8 11.4 47 60-106 123-169 (206)
21 PF06005 DUF904: Protein of un 93.0 1.1 2.4E-05 31.2 8.0 42 62-103 4-52 (72)
22 PF12808 Mto2_bdg: Micro-tubul 92.8 0.53 1.1E-05 31.1 5.9 46 59-104 1-50 (52)
23 PF02183 HALZ: Homeobox associ 92.7 0.69 1.5E-05 29.5 6.2 41 66-106 2-42 (45)
24 TIGR02449 conserved hypothetic 92.5 1.3 2.9E-05 30.5 7.8 46 64-109 9-54 (65)
25 KOG1414|consensus 91.5 0.034 7.4E-07 49.4 -1.2 59 37-95 281-340 (395)
26 PF10473 CENP-F_leu_zip: Leuci 91.3 5 0.00011 31.4 10.8 66 45-110 35-100 (140)
27 PF05266 DUF724: Protein of un 91.3 6.9 0.00015 31.8 12.5 58 41-98 89-146 (190)
28 COG4467 Regulator of replicati 91.2 1 2.2E-05 34.2 6.5 47 62-108 8-54 (114)
29 PRK15422 septal ring assembly 90.9 1.8 3.9E-05 31.0 7.2 23 88-110 51-73 (79)
30 PF04102 SlyX: SlyX; InterPro 90.8 1.8 3.9E-05 29.5 7.0 49 62-110 4-52 (69)
31 PRK00295 hypothetical protein; 90.8 3.2 6.9E-05 28.4 8.2 49 62-110 5-53 (68)
32 PRK04325 hypothetical protein; 90.7 3.1 6.7E-05 28.9 8.2 49 62-110 9-57 (74)
33 PRK00736 hypothetical protein; 90.7 3.3 7.2E-05 28.3 8.2 49 62-110 5-53 (68)
34 COG3074 Uncharacterized protei 90.6 1.9 4E-05 30.6 6.9 47 64-110 20-73 (79)
35 PRK04406 hypothetical protein; 90.2 3.6 7.8E-05 28.8 8.3 49 62-110 11-59 (75)
36 PRK02119 hypothetical protein; 89.9 4 8.8E-05 28.3 8.2 50 61-110 8-57 (73)
37 PRK02793 phi X174 lysis protei 89.8 4.2 9.1E-05 28.1 8.2 49 62-110 8-56 (72)
38 PF11932 DUF3450: Protein of u 89.5 11 0.00024 31.2 12.8 68 59-135 53-120 (251)
39 COG2433 Uncharacterized conser 89.3 1.7 3.7E-05 41.4 7.7 48 61-108 421-468 (652)
40 PF10224 DUF2205: Predicted co 88.8 3.3 7.1E-05 29.6 7.2 46 65-110 19-64 (80)
41 PF13851 GAS: Growth-arrest sp 88.7 11 0.00025 30.6 11.4 63 38-100 69-131 (201)
42 PRK15422 septal ring assembly 88.6 2.9 6.2E-05 30.0 6.8 41 62-102 4-44 (79)
43 PF08614 ATG16: Autophagy prot 88.5 11 0.00024 30.0 11.8 43 63-105 145-187 (194)
44 PF01166 TSC22: TSC-22/dip/bun 87.9 0.93 2E-05 30.8 3.8 29 70-98 15-43 (59)
45 TIGR02894 DNA_bind_RsfA transc 86.9 4.7 0.0001 32.4 7.8 19 77-95 112-130 (161)
46 PF05377 FlaC_arch: Flagella a 86.6 4.4 9.6E-05 27.1 6.4 35 64-98 2-36 (55)
47 KOG4196|consensus 86.3 3.4 7.4E-05 32.3 6.6 23 87-109 78-100 (135)
48 PRK11637 AmiB activator; Provi 86.0 15 0.00033 32.6 11.5 42 61-102 74-115 (428)
49 PRK00846 hypothetical protein; 85.9 9.6 0.00021 27.0 8.2 50 61-110 12-61 (77)
50 TIGR02894 DNA_bind_RsfA transc 85.5 9.7 0.00021 30.6 9.0 34 71-104 99-132 (161)
51 PF11559 ADIP: Afadin- and alp 85.5 14 0.0003 28.1 11.7 14 17-30 9-22 (151)
52 KOG0996|consensus 84.8 24 0.00051 36.4 13.1 90 58-147 830-937 (1293)
53 PF05377 FlaC_arch: Flagella a 84.6 4.4 9.6E-05 27.1 5.6 36 71-106 2-37 (55)
54 PF06216 RTBV_P46: Rice tungro 84.1 5.1 0.00011 35.0 7.3 49 62-110 64-112 (389)
55 KOG0709|consensus 83.9 0.032 6.9E-07 51.1 -6.4 90 3-94 364-453 (472)
56 PF06156 DUF972: Protein of un 83.7 6.1 0.00013 29.4 6.8 42 63-104 16-57 (107)
57 TIGR03752 conj_TIGR03752 integ 83.7 8 0.00017 35.8 8.8 10 10-19 41-50 (472)
58 PF08232 Striatin: Striatin fa 83.7 11 0.00023 28.9 8.3 59 45-103 15-73 (134)
59 PF12718 Tropomyosin_1: Tropom 83.3 8.4 0.00018 29.8 7.6 48 62-109 14-61 (143)
60 PRK13922 rod shape-determining 82.0 4.8 0.0001 33.5 6.3 35 73-107 73-110 (276)
61 PF05103 DivIVA: DivIVA protei 81.9 0.93 2E-05 33.3 1.8 46 61-106 24-69 (131)
62 PRK13169 DNA replication intia 81.6 8.1 0.00018 29.0 6.7 42 63-104 16-57 (110)
63 COG3074 Uncharacterized protei 81.5 13 0.00028 26.4 7.3 43 62-104 4-46 (79)
64 PF11365 DUF3166: Protein of u 81.5 8.8 0.00019 28.3 6.7 46 64-109 3-48 (96)
65 PF15058 Speriolin_N: Sperioli 81.4 4.4 9.5E-05 33.6 5.6 35 65-100 8-42 (200)
66 PF12709 Kinetocho_Slk19: Cent 81.2 13 0.00028 27.1 7.4 38 60-97 40-77 (87)
67 PRK00888 ftsB cell division pr 80.4 5 0.00011 29.5 5.2 26 63-88 35-60 (105)
68 PF04977 DivIC: Septum formati 80.1 7.2 0.00016 25.9 5.6 24 63-86 25-48 (80)
69 COG4942 Membrane-bound metallo 80.1 48 0.0011 30.4 12.4 60 51-110 47-107 (420)
70 PF07106 TBPIP: Tat binding pr 80.0 24 0.00052 27.3 9.2 42 63-104 94-137 (169)
71 smart00340 HALZ homeobox assoc 79.9 6.1 0.00013 25.3 4.7 31 77-107 6-36 (44)
72 KOG3119|consensus 79.7 12 0.00027 31.7 8.0 37 74-110 213-249 (269)
73 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.6 17 0.00037 27.3 8.1 37 65-101 94-130 (132)
74 PF14662 CCDC155: Coiled-coil 78.9 24 0.00053 29.1 9.2 47 61-107 66-112 (193)
75 PF02183 HALZ: Homeobox associ 78.5 6.7 0.00014 24.9 4.7 38 73-110 2-39 (45)
76 PF07989 Microtub_assoc: Micro 78.3 16 0.00034 25.5 6.9 25 65-89 3-27 (75)
77 PF01166 TSC22: TSC-22/dip/bun 78.0 4.6 9.9E-05 27.4 4.0 32 76-107 14-45 (59)
78 PRK13922 rod shape-determining 78.0 7.2 0.00016 32.4 6.1 41 60-100 67-110 (276)
79 PRK13729 conjugal transfer pil 77.9 13 0.00027 34.6 8.0 38 64-101 78-122 (475)
80 TIGR02449 conserved hypothetic 77.9 9.5 0.00021 26.2 5.6 35 64-105 2-36 (65)
81 PF03980 Nnf1: Nnf1 ; InterPr 77.6 4.5 9.8E-05 29.3 4.2 31 60-90 78-108 (109)
82 PRK00888 ftsB cell division pr 77.4 13 0.00029 27.3 6.7 44 64-107 29-72 (105)
83 PF14662 CCDC155: Coiled-coil 77.0 13 0.00028 30.7 7.1 41 63-103 9-49 (193)
84 PF00170 bZIP_1: bZIP transcri 76.5 19 0.0004 23.7 9.0 26 65-90 36-61 (64)
85 PF08826 DMPK_coil: DMPK coile 76.4 21 0.00045 24.2 8.3 39 69-107 18-56 (61)
86 cd07429 Cby_like Chibby, a nuc 76.3 8.4 0.00018 29.0 5.4 29 80-108 76-104 (108)
87 PRK11637 AmiB activator; Provi 76.2 52 0.0011 29.2 11.3 43 61-103 81-123 (428)
88 PRK14127 cell division protein 76.1 12 0.00026 28.1 6.2 39 62-100 30-68 (109)
89 PF04880 NUDE_C: NUDE protein, 76.0 4.6 0.0001 32.4 4.2 36 64-99 2-47 (166)
90 PRK10884 SH3 domain-containing 75.5 44 0.00095 27.5 11.6 46 62-107 118-163 (206)
91 PF12711 Kinesin-relat_1: Kine 75.4 17 0.00037 26.3 6.6 41 67-107 22-68 (86)
92 PF05812 Herpes_BLRF2: Herpesv 75.4 6 0.00013 30.3 4.5 25 62-86 3-27 (118)
93 smart00338 BRLZ basic region l 75.1 18 0.00038 23.8 6.2 31 77-107 27-57 (65)
94 TIGR00219 mreC rod shape-deter 75.1 9.3 0.0002 32.6 6.1 37 72-108 69-109 (283)
95 KOG0995|consensus 75.1 58 0.0012 31.1 11.6 49 61-109 279-327 (581)
96 PRK04863 mukB cell division pr 75.0 41 0.00089 35.3 11.5 79 14-104 1038-1116(1486)
97 TIGR03752 conj_TIGR03752 integ 74.9 47 0.001 30.9 10.8 15 67-81 78-92 (472)
98 PF12325 TMF_TATA_bd: TATA ele 74.2 36 0.00078 25.8 9.1 15 66-80 48-62 (120)
99 PHA03155 hypothetical protein; 73.9 5 0.00011 30.6 3.7 25 63-87 9-33 (115)
100 PF09304 Cortex-I_coil: Cortex 73.9 36 0.00078 25.7 8.3 27 81-107 42-68 (107)
101 KOG4797|consensus 73.6 28 0.00061 26.6 7.6 30 68-97 66-95 (123)
102 COG3167 PilO Tfp pilus assembl 73.5 13 0.00028 31.0 6.2 64 81-144 78-145 (211)
103 PF09726 Macoilin: Transmembra 73.4 83 0.0018 30.5 12.5 32 65-96 548-579 (697)
104 PF07716 bZIP_2: Basic region 73.1 13 0.00029 23.7 5.1 28 76-103 25-52 (54)
105 TIGR02209 ftsL_broad cell divi 73.1 19 0.0004 24.5 6.2 22 79-100 34-55 (85)
106 PRK13729 conjugal transfer pil 72.6 15 0.00034 34.0 7.2 21 65-85 100-120 (475)
107 PF09766 FimP: Fms-interacting 72.6 46 0.001 29.3 10.0 80 56-135 102-189 (355)
108 PHA03162 hypothetical protein; 72.6 5.8 0.00013 31.0 3.8 28 59-86 10-37 (135)
109 PF04111 APG6: Autophagy prote 72.5 19 0.00042 31.1 7.5 29 70-98 51-79 (314)
110 cd00632 Prefoldin_beta Prefold 72.4 27 0.00059 25.1 7.2 44 60-103 61-104 (105)
111 TIGR00219 mreC rod shape-deter 71.8 12 0.00026 32.0 5.9 38 63-100 67-108 (283)
112 PF12709 Kinetocho_Slk19: Cent 71.5 20 0.00044 26.1 6.2 33 63-95 50-82 (87)
113 PF10226 DUF2216: Uncharacteri 71.3 50 0.0011 27.4 9.1 61 37-100 19-79 (195)
114 PF11932 DUF3450: Protein of u 70.9 58 0.0013 26.8 13.7 44 58-101 66-109 (251)
115 PF10186 Atg14: UV radiation r 70.8 56 0.0012 26.6 11.1 38 60-97 68-105 (302)
116 KOG4343|consensus 70.6 4.7 0.0001 38.2 3.4 35 61-95 308-342 (655)
117 KOG1853|consensus 70.2 35 0.00075 29.9 8.3 45 55-99 38-82 (333)
118 PRK10803 tol-pal system protei 69.7 52 0.0011 27.7 9.3 36 64-99 56-91 (263)
119 PF08826 DMPK_coil: DMPK coile 69.6 32 0.00069 23.3 7.5 49 48-96 11-59 (61)
120 PF09744 Jnk-SapK_ap_N: JNK_SA 68.9 56 0.0012 25.9 11.9 49 55-106 71-119 (158)
121 PF08614 ATG16: Autophagy prot 68.5 43 0.00093 26.6 8.2 37 67-103 121-157 (194)
122 PF15070 GOLGA2L5: Putative go 68.5 66 0.0014 30.7 10.6 55 58-112 118-182 (617)
123 PF14645 Chibby: Chibby family 68.2 15 0.00032 27.7 5.2 34 76-109 71-104 (116)
124 PF15290 Syntaphilin: Golgi-lo 68.2 59 0.0013 28.6 9.4 38 96-133 123-165 (305)
125 COG1382 GimC Prefoldin, chaper 67.5 39 0.00085 25.8 7.3 41 58-98 66-106 (119)
126 PF11559 ADIP: Afadin- and alp 67.4 52 0.0011 24.9 11.5 39 48-86 52-90 (151)
127 PF07888 CALCOCO1: Calcium bin 67.0 1.1E+02 0.0024 29.0 11.6 40 45-84 154-193 (546)
128 PF12718 Tropomyosin_1: Tropom 67.0 57 0.0012 25.2 8.7 47 63-109 22-68 (143)
129 TIGR02209 ftsL_broad cell divi 66.5 32 0.00069 23.3 6.2 30 60-89 29-58 (85)
130 PF10805 DUF2730: Protein of u 66.5 30 0.00065 25.3 6.4 39 68-106 48-88 (106)
131 PF04977 DivIC: Septum formati 66.1 34 0.00073 22.6 6.2 30 73-102 21-50 (80)
132 PF04899 MbeD_MobD: MbeD/MobD 66.0 41 0.00088 23.3 6.6 25 74-98 40-64 (70)
133 KOG3584|consensus 65.8 23 0.00051 31.3 6.5 13 86-98 315-327 (348)
134 PRK10803 tol-pal system protei 65.8 31 0.00067 29.0 7.2 64 38-104 40-103 (263)
135 PF13815 Dzip-like_N: Iguana/D 64.9 41 0.00088 24.9 6.9 33 64-96 82-114 (118)
136 PF15619 Lebercilin: Ciliary p 64.4 49 0.0011 26.9 7.9 37 71-107 14-50 (194)
137 PTZ00454 26S protease regulato 64.1 25 0.00055 31.4 6.7 39 65-103 25-63 (398)
138 PF09726 Macoilin: Transmembra 64.1 64 0.0014 31.3 9.7 39 67-105 543-581 (697)
139 PF07334 IFP_35_N: Interferon- 63.1 20 0.00042 25.5 4.6 29 72-100 3-31 (76)
140 PF01920 Prefoldin_2: Prefoldi 63.0 48 0.001 23.0 7.0 39 61-99 61-99 (106)
141 PF09789 DUF2353: Uncharacteri 62.6 37 0.00079 30.0 7.2 38 71-108 191-228 (319)
142 PF15294 Leu_zip: Leucine zipp 62.4 82 0.0018 27.4 9.2 43 67-109 130-179 (278)
143 PF04728 LPP: Lipoprotein leuc 61.8 46 0.00099 22.3 6.8 34 64-97 5-38 (56)
144 KOG1103|consensus 61.6 58 0.0013 29.9 8.4 83 51-133 227-329 (561)
145 KOG0977|consensus 61.5 1.5E+02 0.0033 28.2 12.1 43 64-106 150-192 (546)
146 PF07412 Geminin: Geminin; In 61.3 33 0.00072 28.5 6.3 28 76-103 125-152 (200)
147 COG4026 Uncharacterized protei 60.8 44 0.00095 28.8 7.1 26 66-91 139-164 (290)
148 PF07889 DUF1664: Protein of u 60.4 76 0.0016 24.4 8.5 51 61-111 67-117 (126)
149 KOG2483|consensus 60.4 26 0.00056 29.6 5.7 40 58-104 101-140 (232)
150 PF15035 Rootletin: Ciliary ro 60.3 54 0.0012 26.5 7.3 36 71-106 76-111 (182)
151 PF10186 Atg14: UV radiation r 60.1 93 0.002 25.3 11.1 50 58-107 59-108 (302)
152 TIGR02338 gimC_beta prefoldin, 59.9 63 0.0014 23.5 7.1 40 61-100 66-105 (110)
153 PF06785 UPF0242: Uncharacteri 59.7 1.3E+02 0.0029 27.2 10.2 59 44-102 108-174 (401)
154 PF07106 TBPIP: Tat binding pr 58.5 67 0.0015 24.8 7.5 51 61-111 85-137 (169)
155 PF02388 FemAB: FemAB family; 58.4 40 0.00087 29.9 6.9 51 61-111 241-301 (406)
156 PF07558 Shugoshin_N: Shugoshi 57.6 14 0.00031 23.4 2.9 20 64-83 23-42 (46)
157 PF10205 KLRAQ: Predicted coil 57.1 79 0.0017 23.6 8.6 31 63-93 41-71 (102)
158 PF04999 FtsL: Cell division p 57.0 39 0.00084 23.7 5.4 28 75-102 41-68 (97)
159 PF05529 Bap31: B-cell recepto 56.6 96 0.0021 24.4 8.8 34 70-103 155-188 (192)
160 PF10211 Ax_dynein_light: Axon 55.9 1.1E+02 0.0023 24.7 9.4 40 64-103 122-161 (189)
161 PF10211 Ax_dynein_light: Axon 55.8 1.1E+02 0.0023 24.7 9.4 32 61-92 126-157 (189)
162 KOG0971|consensus 55.8 93 0.002 31.8 9.3 67 44-110 283-359 (1243)
163 PF10224 DUF2205: Predicted co 55.6 73 0.0016 22.7 8.0 43 61-103 22-64 (80)
164 PF05300 DUF737: Protein of un 55.4 59 0.0013 26.5 6.9 51 47-97 119-169 (187)
165 PF10805 DUF2730: Protein of u 55.3 80 0.0017 23.1 8.6 40 61-100 48-89 (106)
166 PF01486 K-box: K-box region; 55.1 38 0.00081 24.1 5.1 26 74-99 73-98 (100)
167 PF04949 Transcrip_act: Transc 55.1 1.1E+02 0.0024 24.6 9.7 44 52-96 103-146 (159)
168 PF08172 CASP_C: CASP C termin 54.9 92 0.002 26.3 8.2 55 38-92 82-137 (248)
169 PF11382 DUF3186: Protein of u 54.9 50 0.0011 28.5 6.7 41 62-102 32-72 (308)
170 PF10883 DUF2681: Protein of u 54.7 79 0.0017 22.9 7.0 31 70-100 24-54 (87)
171 PTZ00454 26S protease regulato 54.1 73 0.0016 28.5 7.8 45 66-110 19-63 (398)
172 PF11577 NEMO: NF-kappa-B esse 53.8 54 0.0012 22.6 5.5 39 67-108 4-42 (68)
173 KOG0243|consensus 53.7 2.7E+02 0.0058 28.6 12.8 67 42-108 411-494 (1041)
174 PF02403 Seryl_tRNA_N: Seryl-t 53.4 43 0.00093 23.9 5.2 7 48-54 52-58 (108)
175 PF04849 HAP1_N: HAP1 N-termin 52.8 56 0.0012 28.8 6.7 45 58-102 223-267 (306)
176 PF08781 DP: Transcription fac 52.7 1E+02 0.0022 24.2 7.5 31 38-74 4-34 (142)
177 PF07407 Seadorna_VP6: Seadorn 52.1 39 0.00084 30.6 5.6 26 65-90 35-60 (420)
178 PF03670 UPF0184: Uncharacteri 52.1 76 0.0017 22.9 6.2 39 63-101 34-72 (83)
179 PF08537 NBP1: Fungal Nap bind 51.6 1.8E+02 0.0038 25.9 11.5 62 39-100 120-206 (323)
180 PF13851 GAS: Growth-arrest sp 51.5 1.3E+02 0.0028 24.4 8.5 23 83-105 100-122 (201)
181 PF14282 FlxA: FlxA-like prote 51.4 93 0.002 22.7 7.8 27 82-108 50-76 (106)
182 COG4985 ABC-type phosphate tra 51.3 44 0.00094 28.9 5.6 74 41-114 185-259 (289)
183 KOG0996|consensus 51.1 2E+02 0.0044 30.0 10.9 64 48-111 528-591 (1293)
184 PRK03992 proteasome-activating 51.1 76 0.0016 27.9 7.4 37 67-103 13-49 (389)
185 PF12325 TMF_TATA_bd: TATA ele 51.1 1.1E+02 0.0023 23.2 7.3 32 67-98 21-52 (120)
186 COG1792 MreC Cell shape-determ 51.0 53 0.0012 28.1 6.2 36 64-99 68-106 (284)
187 PF06657 Cep57_MT_bd: Centroso 51.0 83 0.0018 22.0 7.2 61 80-141 14-74 (79)
188 PF07989 Microtub_assoc: Micro 51.0 74 0.0016 22.1 5.9 31 73-103 40-70 (75)
189 PRK09413 IS2 repressor TnpA; R 50.9 50 0.0011 24.3 5.3 29 72-100 74-102 (121)
190 PRK03992 proteasome-activating 50.3 70 0.0015 28.2 7.0 46 64-109 3-48 (389)
191 PF05812 Herpes_BLRF2: Herpesv 50.1 29 0.00062 26.6 4.0 23 79-101 6-28 (118)
192 PF04340 DUF484: Protein of un 50.1 1.4E+02 0.0029 24.2 8.4 41 63-103 41-84 (225)
193 PF08961 DUF1875: Domain of un 50.0 5.4 0.00012 33.8 0.0 32 64-95 131-162 (243)
194 PRK12704 phosphodiesterase; Pr 49.8 2.2E+02 0.0048 26.5 11.3 10 67-76 98-107 (520)
195 PF09602 PhaP_Bmeg: Polyhydrox 49.6 95 0.0021 25.1 7.0 19 81-99 46-64 (165)
196 PF09755 DUF2046: Uncharacteri 49.4 1E+02 0.0022 27.3 7.7 17 81-97 46-62 (310)
197 KOG0977|consensus 49.0 1.3E+02 0.0029 28.5 8.9 58 53-110 132-189 (546)
198 PF07888 CALCOCO1: Calcium bin 49.0 2.4E+02 0.0053 26.8 11.8 41 63-103 186-226 (546)
199 COG1382 GimC Prefoldin, chaper 48.9 1.2E+02 0.0025 23.3 7.1 34 78-111 79-112 (119)
200 KOG0933|consensus 48.8 2.4E+02 0.0051 29.2 10.9 63 46-108 798-861 (1174)
201 PF03980 Nnf1: Nnf1 ; InterPr 48.8 52 0.0011 23.7 5.1 31 73-103 77-107 (109)
202 PF08317 Spc7: Spc7 kinetochor 48.7 1.8E+02 0.0038 25.1 11.7 30 80-109 241-270 (325)
203 PRK02224 chromosome segregatio 48.7 1.7E+02 0.0037 28.1 9.8 54 56-109 586-639 (880)
204 COG4717 Uncharacterized conser 48.5 2.9E+02 0.0063 28.1 11.3 58 76-133 774-831 (984)
205 KOG0976|consensus 48.5 3.2E+02 0.0069 28.0 13.2 56 35-90 99-155 (1265)
206 COG2919 Septum formation initi 48.5 96 0.0021 23.0 6.6 66 41-106 21-94 (117)
207 PF11690 DUF3287: Protein of u 48.0 88 0.0019 23.6 6.2 37 61-97 41-79 (109)
208 KOG0250|consensus 47.9 2.8E+02 0.006 28.6 11.3 27 81-107 406-432 (1074)
209 PF01763 Herpes_UL6: Herpesvir 47.5 52 0.0011 31.2 6.0 35 62-96 370-404 (557)
210 PRK04778 septation ring format 47.4 1.8E+02 0.0039 27.0 9.5 80 63-142 384-466 (569)
211 PF13874 Nup54: Nucleoporin co 47.3 1.2E+02 0.0027 23.0 8.5 47 61-107 50-96 (141)
212 PF05700 BCAS2: Breast carcino 47.3 1.6E+02 0.0034 24.1 10.6 35 66-100 179-213 (221)
213 KOG3335|consensus 46.5 35 0.00076 27.9 4.2 44 40-89 90-133 (181)
214 PF04728 LPP: Lipoprotein leuc 46.4 88 0.0019 21.0 7.7 37 69-105 3-39 (56)
215 PF06810 Phage_GP20: Phage min 46.2 1.4E+02 0.0031 23.3 8.1 38 56-93 28-68 (155)
216 PF08317 Spc7: Spc7 kinetochor 45.9 1.3E+02 0.0029 25.9 8.0 27 82-108 236-262 (325)
217 PF10146 zf-C4H2: Zinc finger- 45.7 91 0.002 26.1 6.7 41 65-105 63-103 (230)
218 PF14197 Cep57_CLD_2: Centroso 45.6 97 0.0021 21.2 6.6 11 90-100 47-57 (69)
219 PF02994 Transposase_22: L1 tr 45.4 1.2E+02 0.0026 26.9 7.7 48 62-109 144-191 (370)
220 PF12711 Kinesin-relat_1: Kine 45.3 32 0.0007 24.9 3.4 21 89-109 23-43 (86)
221 cd00890 Prefoldin Prefoldin is 45.3 1E+02 0.0022 22.1 6.2 36 65-100 90-125 (129)
222 PF14077 WD40_alt: Alternative 45.0 25 0.00055 22.9 2.5 22 61-82 17-38 (48)
223 PF15070 GOLGA2L5: Putative go 44.5 1.7E+02 0.0036 28.1 9.0 39 61-99 166-204 (617)
224 PF09738 DUF2051: Double stran 44.5 1.4E+02 0.0031 26.0 7.9 49 61-109 118-173 (302)
225 PF14817 HAUS5: HAUS augmin-li 44.5 2.8E+02 0.006 26.8 10.4 63 78-141 405-467 (632)
226 PRK02224 chromosome segregatio 44.3 3E+02 0.0065 26.5 11.7 47 56-102 503-549 (880)
227 PRK09343 prefoldin subunit bet 44.1 1.3E+02 0.0029 22.4 7.5 11 36-46 53-63 (121)
228 COG2900 SlyX Uncharacterized p 44.1 1.1E+02 0.0024 21.5 7.8 48 62-109 8-55 (72)
229 PRK13923 putative spore coat p 44.0 1.3E+02 0.0027 24.4 7.0 38 62-99 111-148 (170)
230 PF04859 DUF641: Plant protein 43.9 51 0.0011 25.5 4.6 34 64-97 96-129 (131)
231 PF06810 Phage_GP20: Phage min 43.9 1.5E+02 0.0033 23.1 7.3 17 63-79 52-68 (155)
232 PF09789 DUF2353: Uncharacteri 43.9 2.3E+02 0.005 25.1 12.4 42 65-106 75-116 (319)
233 TIGR01242 26Sp45 26S proteasom 43.8 68 0.0015 27.6 5.9 37 67-103 4-40 (364)
234 PF13971 Mei4: Meiosis-specifi 43.3 84 0.0018 28.4 6.4 38 59-99 38-75 (375)
235 PF10168 Nup88: Nuclear pore c 43.2 3.2E+02 0.007 26.6 13.8 73 42-114 558-631 (717)
236 PF05529 Bap31: B-cell recepto 43.1 1.6E+02 0.0035 23.1 7.8 24 80-103 158-181 (192)
237 KOG4643|consensus 43.1 90 0.0019 32.0 7.1 40 59-98 527-568 (1195)
238 PF05266 DUF724: Protein of un 42.8 1.8E+02 0.0039 23.6 11.3 10 18-27 80-89 (190)
239 PRK14154 heat shock protein Gr 42.8 93 0.002 25.8 6.2 24 64-87 68-91 (208)
240 PRK10963 hypothetical protein; 42.7 1.2E+02 0.0026 24.8 6.9 25 65-89 54-81 (223)
241 PF07407 Seadorna_VP6: Seadorn 42.2 48 0.001 30.0 4.7 12 91-102 47-58 (420)
242 COG3883 Uncharacterized protei 42.1 1.3E+02 0.0029 25.9 7.2 87 48-135 45-135 (265)
243 PF14775 NYD-SP28_assoc: Sperm 42.1 1E+02 0.0022 20.5 6.7 22 79-100 36-57 (60)
244 KOG1318|consensus 42.1 60 0.0013 29.7 5.4 29 80-108 294-322 (411)
245 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.1 1.5E+02 0.0032 22.2 7.7 10 46-55 51-60 (132)
246 KOG0980|consensus 41.8 4E+02 0.0086 27.2 11.7 64 46-109 450-513 (980)
247 cd04776 HTH_GnyR Helix-Turn-He 41.7 1.4E+02 0.003 21.9 7.6 18 12-29 13-30 (118)
248 KOG2264|consensus 41.7 92 0.002 30.4 6.7 47 62-108 93-139 (907)
249 PF10481 CENP-F_N: Cenp-F N-te 41.6 2.5E+02 0.0054 24.8 9.3 44 66-109 92-135 (307)
250 PF05769 DUF837: Protein of un 41.5 1.9E+02 0.004 23.3 7.8 21 85-105 72-92 (181)
251 KOG0818|consensus 41.5 48 0.001 31.6 4.7 43 61-103 422-464 (669)
252 COG2433 Uncharacterized conser 40.9 88 0.0019 30.2 6.4 40 47-86 420-460 (652)
253 PF10174 Cast: RIM-binding pro 40.7 3.7E+02 0.0081 26.6 13.9 79 13-91 251-330 (775)
254 PHA03162 hypothetical protein; 40.6 43 0.00092 26.3 3.7 22 79-100 16-37 (135)
255 COG1504 Uncharacterized conser 40.4 12 0.00026 28.7 0.6 26 3-28 69-97 (121)
256 TIGR03689 pup_AAA proteasome A 40.4 90 0.002 29.1 6.4 44 75-118 7-50 (512)
257 PF13093 FTA4: Kinetochore com 39.9 55 0.0012 27.0 4.5 66 42-110 146-211 (213)
258 KOG0250|consensus 39.9 3.3E+02 0.0071 28.1 10.4 40 62-101 372-412 (1074)
259 PF01763 Herpes_UL6: Herpesvir 39.9 1.3E+02 0.0029 28.6 7.4 45 61-105 362-406 (557)
260 KOG4571|consensus 39.8 1.6E+02 0.0035 25.8 7.5 47 63-109 242-288 (294)
261 PF09730 BicD: Microtubule-ass 39.6 3.3E+02 0.0072 26.7 10.2 34 83-116 440-473 (717)
262 PHA03155 hypothetical protein; 39.4 43 0.00094 25.6 3.5 22 79-100 11-32 (115)
263 PRK09973 putative outer membra 39.4 1.5E+02 0.0032 21.5 6.5 50 70-119 25-74 (85)
264 KOG3650|consensus 39.3 1.2E+02 0.0026 22.9 5.8 36 73-108 67-102 (120)
265 TIGR02338 gimC_beta prefoldin, 39.2 99 0.0021 22.4 5.3 31 65-95 77-107 (110)
266 cd07666 BAR_SNX7 The Bin/Amphi 39.1 2.4E+02 0.0052 23.9 8.9 60 41-103 149-208 (243)
267 PF05008 V-SNARE: Vesicle tran 39.1 93 0.002 20.8 4.9 19 81-99 59-77 (79)
268 KOG2656|consensus 39.0 1.7E+02 0.0036 27.0 7.7 74 56-130 206-279 (445)
269 PF10359 Fmp27_WPPW: RNA pol I 38.8 1.5E+02 0.0033 27.0 7.6 63 41-109 162-226 (475)
270 COG4372 Uncharacterized protei 38.7 3.3E+02 0.0071 25.4 12.1 98 46-143 128-243 (499)
271 PRK14140 heat shock protein Gr 38.7 1.4E+02 0.0031 24.3 6.7 24 63-86 52-75 (191)
272 PRK14162 heat shock protein Gr 38.5 1.3E+02 0.0029 24.6 6.5 25 62-86 53-77 (194)
273 PF13815 Dzip-like_N: Iguana/D 38.5 1.6E+02 0.0034 21.7 7.5 33 74-106 78-110 (118)
274 KOG1962|consensus 38.5 1E+02 0.0022 25.9 5.9 30 78-107 181-210 (216)
275 PF06632 XRCC4: DNA double-str 38.5 1.5E+02 0.0032 26.3 7.2 23 66-88 148-170 (342)
276 PRK03947 prefoldin subunit alp 38.5 1.6E+02 0.0036 21.8 7.1 23 79-101 111-133 (140)
277 PF07795 DUF1635: Protein of u 38.5 1.9E+02 0.004 24.3 7.4 53 46-98 17-69 (214)
278 PF09755 DUF2046: Uncharacteri 38.2 2.9E+02 0.0062 24.5 10.2 25 77-101 179-203 (310)
279 PF08286 Spc24: Spc24 subunit 37.9 11 0.00023 27.9 0.0 44 65-108 2-45 (118)
280 PF13805 Pil1: Eisosome compon 37.6 2.7E+02 0.0059 24.1 9.3 50 41-90 144-193 (271)
281 PF10779 XhlA: Haemolysin XhlA 37.6 1.3E+02 0.0028 20.3 7.6 40 64-103 8-47 (71)
282 PF07047 OPA3: Optic atrophy 3 37.4 95 0.0021 23.6 5.2 19 62-80 112-130 (134)
283 PRK01203 prefoldin subunit alp 37.3 1.5E+02 0.0032 22.9 6.2 40 65-104 3-42 (130)
284 TIGR03185 DNA_S_dndD DNA sulfu 37.1 3E+02 0.0064 25.9 9.4 29 63-91 210-238 (650)
285 PRK14158 heat shock protein Gr 37.0 1.4E+02 0.003 24.4 6.4 27 61-87 53-79 (194)
286 PF07058 Myosin_HC-like: Myosi 36.9 79 0.0017 28.3 5.1 25 71-95 2-26 (351)
287 PF00038 Filament: Intermediat 36.8 2.5E+02 0.0054 23.4 10.9 37 68-104 215-251 (312)
288 PF12999 PRKCSH-like: Glucosid 36.8 2.3E+02 0.005 23.0 8.0 32 58-89 142-173 (176)
289 PRK11239 hypothetical protein; 36.7 69 0.0015 26.9 4.6 24 81-104 188-211 (215)
290 cd07665 BAR_SNX1 The Bin/Amphi 36.6 2.6E+02 0.0055 23.5 9.5 28 58-85 25-52 (234)
291 cd00632 Prefoldin_beta Prefold 36.3 1.5E+02 0.0031 21.2 5.8 28 65-92 73-100 (105)
292 KOG1691|consensus 36.2 2E+02 0.0044 24.1 7.2 74 60-135 132-206 (210)
293 PF12329 TMF_DNA_bd: TATA elem 36.2 1.4E+02 0.0031 20.5 7.7 48 60-107 10-57 (74)
294 PRK06798 fliD flagellar cappin 36.1 2.3E+02 0.005 25.7 8.2 13 122-134 423-435 (440)
295 PF03962 Mnd1: Mnd1 family; I 36.0 2.3E+02 0.005 22.7 10.8 20 81-100 108-127 (188)
296 COG1729 Uncharacterized protei 35.9 1.3E+02 0.0027 25.9 6.2 44 63-107 57-100 (262)
297 PF04350 PilO: Pilus assembly 35.8 76 0.0017 23.1 4.3 13 69-81 6-18 (144)
298 PF07558 Shugoshin_N: Shugoshi 35.6 44 0.00096 21.1 2.6 29 76-104 14-42 (46)
299 COG4467 Regulator of replicati 35.5 1.6E+02 0.0034 22.5 5.9 39 63-101 16-54 (114)
300 PF14915 CCDC144C: CCDC144C pr 35.4 3.2E+02 0.0069 24.2 8.9 40 68-107 206-245 (305)
301 PRK14160 heat shock protein Gr 35.0 2.2E+02 0.0048 23.6 7.3 11 127-137 146-156 (211)
302 PF07334 IFP_35_N: Interferon- 35.0 74 0.0016 22.6 3.9 23 85-107 2-24 (76)
303 cd07624 BAR_SNX7_30 The Bin/Am 34.9 1.8E+02 0.0039 23.2 6.7 41 60-100 19-59 (200)
304 KOG4797|consensus 34.9 89 0.0019 23.9 4.5 28 76-103 67-94 (123)
305 KOG4673|consensus 34.9 2.9E+02 0.0063 27.6 8.9 73 62-140 409-483 (961)
306 TIGR03689 pup_AAA proteasome A 34.8 1.2E+02 0.0026 28.4 6.3 41 64-104 3-43 (512)
307 KOG0982|consensus 34.8 3.9E+02 0.0085 25.1 9.8 33 78-110 299-331 (502)
308 PRK02119 hypothetical protein; 34.8 1.5E+02 0.0033 20.4 7.2 40 64-103 18-57 (73)
309 COG0598 CorA Mg2+ and Co2+ tra 34.7 2.6E+02 0.0057 23.8 8.0 50 61-110 153-207 (322)
310 PF04999 FtsL: Cell division p 34.7 1.6E+02 0.0034 20.5 6.2 25 64-88 44-68 (97)
311 PF08781 DP: Transcription fac 34.4 2.2E+02 0.0047 22.4 6.8 38 71-108 3-40 (142)
312 PHA00728 hypothetical protein 34.3 55 0.0012 25.6 3.4 21 70-90 6-26 (151)
313 PF04880 NUDE_C: NUDE protein, 34.2 39 0.00085 27.1 2.7 29 71-100 26-54 (166)
314 PF13600 DUF4140: N-terminal d 34.2 1.2E+02 0.0027 21.3 5.1 9 91-99 92-100 (104)
315 PRK04406 hypothetical protein; 34.0 1.6E+02 0.0035 20.4 7.4 23 66-88 8-30 (75)
316 PF14916 CCDC92: Coiled-coil d 33.7 1.1E+02 0.0025 20.7 4.5 34 63-96 4-41 (60)
317 PRK14127 cell division protein 33.6 2E+02 0.0044 21.5 6.8 35 75-109 36-70 (109)
318 PRK14160 heat shock protein Gr 33.5 1.7E+02 0.0036 24.4 6.3 33 65-97 64-96 (211)
319 PF06698 DUF1192: Protein of u 33.4 93 0.002 21.0 4.0 18 65-82 24-41 (59)
320 PRK14148 heat shock protein Gr 33.4 1.7E+02 0.0037 24.0 6.3 26 61-86 53-78 (195)
321 KOG0161|consensus 33.3 4.8E+02 0.01 28.8 10.9 64 48-111 1646-1709(1930)
322 PF05010 TACC: Transforming ac 33.3 2.8E+02 0.006 22.9 8.0 19 63-81 176-194 (207)
323 cd07628 BAR_Atg24p The Bin/Amp 33.2 2.3E+02 0.005 22.5 7.0 45 60-104 9-53 (185)
324 PF10473 CENP-F_leu_zip: Leuci 33.1 2.4E+02 0.0051 22.0 8.5 16 61-76 23-38 (140)
325 PLN02320 seryl-tRNA synthetase 33.0 1.3E+02 0.0028 28.2 6.2 34 73-106 134-167 (502)
326 PRK14143 heat shock protein Gr 32.8 1.7E+02 0.0038 24.6 6.4 27 61-87 80-106 (238)
327 PF04102 SlyX: SlyX; InterPro 32.7 1.6E+02 0.0034 19.8 7.2 40 64-103 13-52 (69)
328 PHA00728 hypothetical protein 32.4 66 0.0014 25.2 3.6 28 83-110 5-32 (151)
329 KOG0963|consensus 32.0 3.6E+02 0.0078 26.2 9.0 23 87-109 186-208 (629)
330 KOG1055|consensus 32.0 18 0.00039 35.8 0.5 61 41-101 726-791 (865)
331 PRK14151 heat shock protein Gr 31.8 1.6E+02 0.0034 23.6 5.8 13 127-139 109-121 (176)
332 PF02646 RmuC: RmuC family; I 31.6 2.7E+02 0.0057 23.8 7.5 45 64-108 15-66 (304)
333 PF01486 K-box: K-box region; 31.6 1.9E+02 0.0041 20.4 6.8 26 61-86 74-99 (100)
334 PRK14139 heat shock protein Gr 31.6 1.9E+02 0.0041 23.5 6.3 23 64-86 48-70 (185)
335 cd07429 Cby_like Chibby, a nuc 31.5 1.4E+02 0.003 22.4 5.1 20 71-90 81-100 (108)
336 KOG0837|consensus 31.1 3.6E+02 0.0078 23.5 9.3 41 71-111 229-269 (279)
337 PF06299 DUF1045: Protein of u 30.7 32 0.00069 27.5 1.6 20 10-29 86-105 (160)
338 KOG4378|consensus 30.7 67 0.0014 30.7 3.9 22 76-97 650-671 (673)
339 COG1792 MreC Cell shape-determ 30.5 1.6E+02 0.0034 25.2 5.9 48 63-110 57-110 (284)
340 TIGR00414 serS seryl-tRNA synt 30.3 1.8E+02 0.0039 26.2 6.5 34 72-105 72-105 (418)
341 KOG1656|consensus 30.2 2.4E+02 0.0053 23.8 6.8 23 46-68 56-78 (221)
342 cd07623 BAR_SNX1_2 The Bin/Amp 30.2 2.9E+02 0.0064 22.4 7.3 30 59-88 16-45 (224)
343 PF07047 OPA3: Optic atrophy 3 30.0 1.6E+02 0.0035 22.3 5.4 23 65-87 108-130 (134)
344 KOG0946|consensus 29.7 5.1E+02 0.011 26.3 9.7 45 63-107 672-716 (970)
345 PF04129 Vps52: Vps52 / Sac2 f 29.7 2.1E+02 0.0046 26.3 7.0 44 61-104 27-70 (508)
346 COG1730 GIM5 Predicted prefold 29.5 2.8E+02 0.006 21.7 7.5 33 65-97 104-136 (145)
347 PF05600 DUF773: Protein of un 29.4 4.7E+02 0.01 24.3 9.2 62 45-106 414-476 (507)
348 PF09325 Vps5: Vps5 C terminal 29.3 2.8E+02 0.0062 21.8 7.4 30 60-89 29-58 (236)
349 COG1730 GIM5 Predicted prefold 29.1 2.5E+02 0.0053 22.0 6.3 47 62-108 6-52 (145)
350 cd07630 BAR_SNX_like The Bin/A 29.0 3.1E+02 0.0068 22.2 8.3 27 58-84 7-33 (198)
351 PF02996 Prefoldin: Prefoldin 28.9 2E+02 0.0043 20.4 5.5 17 79-95 94-110 (120)
352 PF15458 NTR2: Nineteen comple 28.9 2.7E+02 0.0058 23.4 7.0 43 65-107 211-253 (254)
353 PF15556 Zwint: ZW10 interacto 28.9 3.7E+02 0.0079 22.9 9.8 64 47-110 112-175 (252)
354 PRK14157 heat shock protein Gr 28.8 1.7E+02 0.0037 24.6 5.7 14 126-139 157-170 (227)
355 PF11221 Med21: Subunit 21 of 28.7 2.4E+02 0.0052 21.5 6.2 32 69-100 104-135 (144)
356 KOG0979|consensus 28.5 6.8E+02 0.015 25.9 10.9 79 57-135 306-384 (1072)
357 PF08912 Rho_Binding: Rho Bind 28.3 2.1E+02 0.0045 19.9 6.4 34 67-100 1-34 (69)
358 KOG0249|consensus 27.9 3.1E+02 0.0067 27.5 7.9 20 85-104 239-258 (916)
359 KOG4643|consensus 27.9 6E+02 0.013 26.5 10.0 62 42-103 374-435 (1195)
360 PF14197 Cep57_CLD_2: Centroso 27.9 2E+02 0.0044 19.6 7.6 31 67-97 3-33 (69)
361 TIGR00606 rad50 rad50. This fa 27.9 6.9E+02 0.015 25.8 11.1 28 65-92 884-911 (1311)
362 PF14817 HAUS5: HAUS augmin-li 27.8 5.2E+02 0.011 25.0 9.4 37 64-100 81-117 (632)
363 PF05700 BCAS2: Breast carcino 27.6 3.4E+02 0.0073 22.1 8.3 28 61-88 135-162 (221)
364 KOG0612|consensus 27.6 6.6E+02 0.014 26.6 10.3 43 59-101 498-540 (1317)
365 PRK14161 heat shock protein Gr 27.3 2.5E+02 0.0055 22.5 6.3 23 64-86 35-57 (178)
366 PF10205 KLRAQ: Predicted coil 27.1 2.7E+02 0.0058 20.8 7.8 29 79-107 43-71 (102)
367 PRK11239 hypothetical protein; 26.9 1.2E+02 0.0026 25.5 4.4 26 65-90 186-211 (215)
368 PRK04325 hypothetical protein; 26.8 2.2E+02 0.0047 19.6 7.0 39 64-102 18-56 (74)
369 PLN02678 seryl-tRNA synthetase 26.7 2.2E+02 0.0048 26.1 6.5 35 72-106 74-108 (448)
370 PF11382 DUF3186: Protein of u 26.7 1.9E+02 0.0042 24.9 5.9 38 72-109 35-72 (308)
371 TIGR02976 phageshock_pspB phag 26.1 1.6E+02 0.0035 20.6 4.3 22 86-107 45-66 (75)
372 smart00787 Spc7 Spc7 kinetocho 25.7 4.5E+02 0.0097 22.9 10.0 90 33-122 202-303 (312)
373 PRK10265 chaperone-modulator p 25.6 1.2E+02 0.0026 21.8 3.8 23 79-101 74-96 (101)
374 PRK13923 putative spore coat p 25.6 3.6E+02 0.0078 21.8 6.8 39 68-106 110-148 (170)
375 PF05565 Sipho_Gp157: Siphovir 25.5 3.2E+02 0.0069 21.2 6.5 40 62-101 47-86 (162)
376 PF05911 DUF869: Plant protein 25.5 3.3E+02 0.0072 26.9 7.8 31 72-102 130-160 (769)
377 PRK14145 heat shock protein Gr 25.5 2.9E+02 0.0063 22.7 6.4 26 61-86 58-83 (196)
378 PF04899 MbeD_MobD: MbeD/MobD 25.4 2.3E+02 0.0051 19.5 7.0 36 74-109 26-61 (70)
379 PRK14155 heat shock protein Gr 25.4 2.1E+02 0.0046 23.6 5.6 24 63-86 28-51 (208)
380 PRK09039 hypothetical protein; 25.4 4.6E+02 0.01 22.9 10.9 32 64-95 153-184 (343)
381 PF15294 Leu_zip: Leucine zipp 25.4 83 0.0018 27.3 3.3 30 81-110 130-159 (278)
382 PF04508 Pox_A_type_inc: Viral 25.2 1E+02 0.0022 17.2 2.6 15 59-73 5-19 (23)
383 PF05103 DivIVA: DivIVA protei 25.2 28 0.0006 25.3 0.3 35 65-99 35-69 (131)
384 PRK03947 prefoldin subunit alp 25.2 2.9E+02 0.0062 20.5 6.9 46 60-105 4-49 (140)
385 PHA02109 hypothetical protein 25.1 2.7E+02 0.0058 23.2 6.1 32 77-108 194-225 (233)
386 cd07627 BAR_Vps5p The Bin/Amph 25.0 3.6E+02 0.0079 21.6 9.6 44 59-102 8-51 (216)
387 PRK14147 heat shock protein Gr 24.9 2.4E+02 0.0052 22.5 5.7 13 127-139 104-116 (172)
388 PRK14163 heat shock protein Gr 24.9 2.7E+02 0.0058 23.2 6.2 24 63-86 55-78 (214)
389 COG4026 Uncharacterized protei 24.8 4.6E+02 0.0099 22.7 9.7 27 74-100 161-187 (290)
390 COG3883 Uncharacterized protei 24.8 4.6E+02 0.0099 22.7 12.2 57 44-103 55-111 (265)
391 PF06632 XRCC4: DNA double-str 24.7 3.7E+02 0.0081 23.8 7.4 8 67-74 156-163 (342)
392 TIGR01242 26Sp45 26S proteasom 24.6 2E+02 0.0043 24.7 5.6 32 64-95 8-39 (364)
393 PRK14872 rod shape-determining 24.6 2.1E+02 0.0046 25.5 5.8 20 72-91 60-79 (337)
394 PF15058 Speriolin_N: Sperioli 24.5 1.1E+02 0.0024 25.5 3.7 23 80-102 9-31 (200)
395 COG3132 Uncharacterized protei 24.2 1.1E+02 0.0024 25.5 3.7 59 44-102 135-211 (215)
396 PRK05431 seryl-tRNA synthetase 24.1 3E+02 0.0064 24.8 6.8 35 72-106 69-103 (425)
397 PRK00295 hypothetical protein; 23.7 2.4E+02 0.0052 19.1 6.8 41 63-103 13-53 (68)
398 PF12128 DUF3584: Protein of u 23.6 8.1E+02 0.018 25.1 11.8 59 52-110 480-538 (1201)
399 PRK14141 heat shock protein Gr 23.4 2.3E+02 0.005 23.4 5.5 12 127-138 125-136 (209)
400 PF12777 MT: Microtubule-bindi 23.2 4.9E+02 0.011 22.5 8.5 51 58-108 238-288 (344)
401 PF11365 DUF3166: Protein of u 23.2 97 0.0021 22.8 2.9 28 67-94 67-94 (96)
402 PF13863 DUF4200: Domain of un 23.1 2.9E+02 0.0063 19.8 8.4 12 74-85 86-97 (126)
403 PF07412 Geminin: Geminin; In 23.0 4.4E+02 0.0096 21.9 8.8 39 74-112 130-171 (200)
404 TIGR01834 PHA_synth_III_E poly 23.0 3.2E+02 0.007 24.2 6.6 40 65-104 274-317 (320)
405 KOG0288|consensus 22.9 6.3E+02 0.014 23.6 10.1 31 61-91 47-77 (459)
406 KOG4286|consensus 22.8 3.1E+02 0.0068 27.6 6.9 49 63-111 835-883 (966)
407 KOG4460|consensus 22.7 7.3E+02 0.016 24.3 10.2 87 49-135 587-680 (741)
408 PRK02793 phi X174 lysis protei 22.5 2.6E+02 0.0057 19.1 7.1 40 64-103 17-56 (72)
409 PRK06664 fliD flagellar hook-a 22.5 6E+02 0.013 24.6 8.8 6 19-24 522-527 (661)
410 PF11544 Spc42p: Spindle pole 22.5 2.9E+02 0.0063 19.6 9.2 25 59-83 23-47 (76)
411 PRK00736 hypothetical protein; 22.5 2.6E+02 0.0055 18.9 6.4 42 63-104 13-54 (68)
412 PF04201 TPD52: Tumour protein 22.5 4.1E+02 0.009 21.4 6.8 14 63-76 37-50 (162)
413 KOG3335|consensus 22.5 3.7E+02 0.0081 22.1 6.4 34 75-108 105-138 (181)
414 cd07622 BAR_SNX4 The Bin/Amphi 22.5 4.1E+02 0.0089 21.5 6.7 39 61-99 20-58 (201)
415 COG3159 Uncharacterized protei 22.4 3.8E+02 0.0082 22.6 6.6 31 62-92 52-85 (218)
416 PF06818 Fez1: Fez1; InterPro 22.3 4.6E+02 0.0099 21.8 7.8 44 59-102 63-106 (202)
417 PF10883 DUF2681: Protein of u 22.2 3.1E+02 0.0067 19.8 6.4 31 69-99 30-62 (87)
418 PF11471 Sugarporin_N: Maltopo 22.2 2E+02 0.0043 19.2 4.1 16 67-82 30-45 (60)
419 TIGR02168 SMC_prok_B chromosom 22.2 7.2E+02 0.016 24.1 11.3 23 66-88 444-466 (1179)
420 KOG1103|consensus 22.1 3.3E+02 0.0073 25.1 6.6 33 64-96 261-293 (561)
421 PF11285 DUF3086: Protein of u 22.1 2E+02 0.0042 25.2 4.9 31 62-92 4-34 (283)
422 PF08961 DUF1875: Domain of un 22.1 30 0.00064 29.5 0.0 43 60-102 120-162 (243)
423 PF10079 DUF2317: Uncharacteri 22.1 5.8E+02 0.013 24.0 8.5 31 2-32 349-379 (542)
424 KOG0483|consensus 22.1 1.8E+02 0.0039 24.0 4.6 43 65-107 108-150 (198)
425 PF14357 DUF4404: Domain of un 22.0 2.2E+02 0.0049 20.0 4.5 21 117-137 46-67 (85)
426 PF05308 Mito_fiss_reg: Mitoch 21.9 1.3E+02 0.0029 25.5 3.9 29 78-106 117-145 (253)
427 KOG1510|consensus 21.7 4.1E+02 0.0088 21.0 6.9 36 71-106 93-128 (139)
428 KOG4593|consensus 21.6 6.9E+02 0.015 24.7 8.9 47 62-108 275-324 (716)
429 KOG0483|consensus 21.6 1.8E+02 0.004 23.9 4.5 36 65-100 115-150 (198)
430 PRK04863 mukB cell division pr 21.0 1E+03 0.023 25.4 11.2 8 48-55 328-335 (1486)
431 PF14992 TMCO5: TMCO5 family 20.9 2E+02 0.0042 25.1 4.7 45 65-109 7-51 (280)
432 PF09738 DUF2051: Double stran 20.9 4.4E+02 0.0096 23.0 7.0 21 61-81 83-103 (302)
433 PRK05771 V-type ATP synthase s 20.9 3.2E+02 0.0069 25.7 6.5 39 66-104 90-128 (646)
434 PF10146 zf-C4H2: Zinc finger- 20.8 5E+02 0.011 21.7 8.1 15 62-76 32-46 (230)
435 cd07681 F-BAR_PACSIN3 The F-BA 20.8 5.3E+02 0.011 22.0 12.9 85 39-128 170-255 (258)
436 PRK14144 heat shock protein Gr 20.8 3.8E+02 0.0083 22.1 6.2 25 62-86 59-83 (199)
437 PRK14872 rod shape-determining 20.7 3.2E+02 0.0069 24.4 6.1 27 62-88 57-83 (337)
438 PRK14146 heat shock protein Gr 20.5 3.6E+02 0.0079 22.3 6.1 21 65-85 71-91 (215)
439 PF02050 FliJ: Flagellar FliJ 20.5 2.8E+02 0.0062 18.7 8.0 43 61-103 51-93 (123)
440 PF15397 DUF4618: Domain of un 20.2 5.6E+02 0.012 22.0 11.4 72 37-109 140-219 (258)
441 PF05761 5_nucleotid: 5' nucle 20.2 5.8E+02 0.013 23.4 7.9 47 64-111 344-390 (448)
442 COG3416 Uncharacterized protei 20.2 3.7E+02 0.0081 22.8 6.1 11 11-21 1-11 (233)
No 1
>KOG0709|consensus
Probab=99.90 E-value=4.2e-24 Score=190.30 Aligned_cols=107 Identities=53% Similarity=0.792 Sum_probs=103.1
Q ss_pred ccccCHHHHhhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 8 VLHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 8 ~~~l~~ee~~~l~~~g~~~p~~~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
-|.||+||+++|.++||.+|+.+|+|++||+.+||+||||||++|||.||+|||+||+.||.+|...+.+|++|+.+++.
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~ 297 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE 297 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy3460 88 LEDTNYSLVSQLNKLQAIIARHTAQLS 114 (153)
Q Consensus 88 L~~eN~~L~~ql~~L~~~v~~~~~~~s 114 (153)
|+.+|..|.++|.+|++++.+..++..
T Consensus 298 Le~~N~sLl~qL~klQt~v~q~an~s~ 324 (472)
T KOG0709|consen 298 LELSNRSLLAQLKKLQTLVIQVANKST 324 (472)
T ss_pred HhhccHHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999999998776544
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.57 E-value=2.3e-14 Score=96.73 Aligned_cols=63 Identities=40% Similarity=0.500 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
++.|+.+|+++||+||+.||.||+.|+.+||.++..|+.+|..|..++..|..++..|++++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999999999999999999999998764
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.50 E-value=1.8e-13 Score=92.23 Aligned_cols=63 Identities=43% Similarity=0.565 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
++..++.+|+++||+||++||.||+.|+.+||.++..|+.+|..|+..+..|..++..|..++
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356789999999999999999999999999999999999999999999999999999988775
No 4
>KOG3584|consensus
Probab=99.38 E-value=1.1e-12 Score=112.36 Aligned_cols=65 Identities=37% Similarity=0.596 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 31 PLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 31 p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|...+||...||+-|++|||+||+.||+|||+||.|||.+|..|++ +|..|.++|+.|+.+.+..
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLEN--------------QNKaLIEELKtLKeLYc~k 345 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLEN--------------QNKALIEELKTLKELYCHK 345 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhc--------------ccHHHHHHHHHHHHHhhcc
Confidence 7888999999999999999999999999999999999999988765 4555566666666665543
No 5
>KOG4343|consensus
Probab=99.35 E-value=3.2e-12 Score=116.56 Aligned_cols=67 Identities=46% Similarity=0.564 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 31 PLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 31 p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
|--+.|.+..|++.||||||+||+.||+|||+|+..||.+++.|.+||+.|+. ||..|+++|..|-+
T Consensus 271 p~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~-------ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 271 PNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKK-------ENATLKRQLDELVS 337 (655)
T ss_pred CCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhh
Confidence 33467899999999999999999999999999999999999999999999987 99999999886654
No 6
>KOG4005|consensus
Probab=99.32 E-value=1.1e-11 Score=104.02 Aligned_cols=61 Identities=33% Similarity=0.415 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 39 SLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 39 ~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+.|.+||++|||+|||.+|+|||++++++|.++.+|+.||..|..+++.|+..|..|..+.
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n 127 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKN 127 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3588899999999999999999999999999999999988887766666655554444333
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.24 E-value=7.5e-11 Score=77.33 Aligned_cols=52 Identities=35% Similarity=0.528 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 39 SLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 39 ~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~e 91 (153)
+.++.+|. +||+||++||.|||.|+.+||.++..|+.+|..|..++..|+.|
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34667777 99999999999999999999999999999999999988888764
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.80 E-value=5.7e-11 Score=85.59 Aligned_cols=71 Identities=30% Similarity=0.428 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 30 LPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 30 ~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..+|+++...+|..||.+|||.||+.||+||..++.+||.++..|..+...|..++..+..+...+++++.
T Consensus 19 ~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~ 89 (92)
T PF03131_consen 19 RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLE 89 (92)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788889999999999999999999999999999999999988777666666555555444444444333
No 9
>KOG3863|consensus
Probab=98.78 E-value=3e-08 Score=91.90 Aligned_cols=114 Identities=26% Similarity=0.329 Sum_probs=99.0
Q ss_pred ccCHHHHhhhhhcCCCCCCC----------------CCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH
Q psy3460 10 HLTEEEKRTLQAEGYPIPTR----------------LPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEI 73 (153)
Q Consensus 10 ~l~~ee~~~l~~~g~~~p~~----------------~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~ 73 (153)
.++.+|.|. ...-|++|.. +.+|+..-.-++-+||.=|||+|||.||+||-.-|..||..|..
T Consensus 444 ~~srde~ra-~a~~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~ 522 (604)
T KOG3863|consen 444 HLSRDEHRA-KALHIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEK 522 (604)
T ss_pred ccchhhhhh-hhccCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHH
Confidence 578899998 5777777766 34566666678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVS 124 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~s 124 (153)
|..+-..|...--++......+++++..|...|.+...+..+..+.|..++
T Consensus 523 l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~eg~~~sp~~ya 573 (604)
T KOG3863|consen 523 LQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYA 573 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHH
Confidence 999999999888889999999999999999999998877777777777763
No 10
>KOG0837|consensus
Probab=98.52 E-value=6.5e-07 Score=76.06 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 32 LTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 32 ~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
...+++...|-+|..++||++|.+||+||-++|..||++|..+..+|..|-..+..|......+++.+
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V 264 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKV 264 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777899999999999999999999999999999999998875554444444444443
No 11
>KOG4571|consensus
Probab=98.17 E-value=1.3e-05 Score=69.07 Aligned_cols=63 Identities=32% Similarity=0.356 Sum_probs=55.3
Q ss_pred HHHHH-HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRR-KIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 41 Kr~rR-~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
++.+| ...|++||.+-|+||++-.+.|+.+.+.|+.+|.+|+.++..|+.|.+.|++-+....
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 5688889999999999999999999999999999999999999999999998765443
No 12
>KOG4196|consensus
Probab=97.89 E-value=0.00069 Score=52.53 Aligned_cols=69 Identities=26% Similarity=0.394 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 32 LTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 32 ~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.+|--.+|..||-+|||=.|+.||-|...--.+||.+- ..|+.+++.|..||..++.++..+.+.+.
T Consensus 44 ~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k-------~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 44 LSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEK-------AELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666788899999999999999999887766766654 55555555555566666555555554443
No 13
>KOG3119|consensus
Probab=97.67 E-value=0.00029 Score=59.76 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 36 EEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 36 eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|.++.+=..|.-||=+||++||++.|....++..++..|+.||..|+.++..|+.++..|++-+.
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677789999999999999999999999999999999999988888887777776554
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.52 E-value=0.098 Score=39.03 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
..+..||.++..+..+...|+..+..|.+||..|+-+...|+..+....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999987753
No 15
>KOG1414|consensus
Probab=95.46 E-value=0.00066 Score=60.24 Aligned_cols=65 Identities=31% Similarity=0.437 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhHHHHH---HHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 36 EEKSLKKIRRKIKNKISAQE---SRRKKKEYMDALERKVEILK-SENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 36 eek~~Kr~rR~lkNR~SAq~---SR~RKKeyl~~LE~~v~~L~-~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+.+.++..|..+|+++|+. ||.+++.+...|..+++.|+ .++..|..+++.|.+++..|...+.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~ 217 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELN 217 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHh
Confidence 35577899999999999999 99999999999999999999 9999999999999999999888775
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.03 E-value=0.17 Score=38.03 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..+..||.++..+..+...|+..+..|.+||..|+-+...|+..+...
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999988864
No 17
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=94.77 E-value=0.15 Score=43.06 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 57 RRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 57 R~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|+|=+.+..+||.++..+..++..|+.++..|+.+|..|-+.+..|++.-.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 455666779999999999999999999999999999999999999998775
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.60 E-value=0.37 Score=33.62 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+.+.-|..++..|..+|..|......|..+|..|+++-...+.++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555444444433
No 19
>KOG4005|consensus
Probab=94.13 E-value=0.35 Score=41.46 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHHH--HhhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 32 LTKTEEKSLKKIRRKI--KNKISAQESRRKKKEY-MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 32 ~t~~eek~~Kr~rR~l--kNR~SAq~SR~RKKey-l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
++.+|.-..|+.+-.. .|----.+.|+-+-+| |.+|+.+-+.|..||..|+.+.+.|..+|..|.+.|+.++.-
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555556666444 2333334667777666 789999999999999999999999999999999988855443
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.00 E-value=2.5 Score=34.81 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
-++.+...+..+..|..+|.+|+.++..+++++..|..++..++..+
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788888999999999999999999999888888777544
No 21
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.99 E-value=1.1 Score=31.24 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDT-------NYSLVSQLNKLQ 103 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~e-------N~~L~~ql~~L~ 103 (153)
+-++.||.+|..+-..+..|+.++..|+.+ |..|+.+..+|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346778888777655555555555555555 555555555554
No 22
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=92.81 E-value=0.53 Score=31.15 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKS----ENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~----eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
|+..++.+||.+++.-.. .+.....++..|+.||..|+.+|..++.
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356678888887765331 3556788999999999999999987664
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.72 E-value=0.69 Score=29.50 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+||.....|...-..|+.....|..||..|+.++..|...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47777777887778888877778888888888887776544
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.54 E-value=1.3 Score=30.47 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|+.|=.....|..||..|+.++..+..|+..|.+.+..-++.|..+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556788888888888888888888888877666555543
No 25
>KOG1414|consensus
Probab=91.55 E-value=0.034 Score=49.44 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYK-KRISNLEDTNYSL 95 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~-~~~~~L~~eN~~L 95 (153)
+.+.++.+=..+||.||-+||.|||.++..|+.+...+..+|..|. ..++.|..++..+
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~ 340 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQL 340 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhh
Confidence 3344555557799999999999999999999999999999999988 4333333333333
No 26
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.35 E-value=5 Score=31.37 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 45 RKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 45 R~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
-...|+..+-.--.-.+..+..|+.++..++.+.+.|...+..+..++..|.+.++.++..|..-.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888777788999999999999999999999999999999999999999999988887754
No 27
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.30 E-value=6.9 Score=31.80 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=38.0
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+-.+..|...++-+..+....++..++|.++..-+.++..+...+..|+.....|+.+
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4455566667888888888888888888888766555555555555555554444444
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.22 E-value=1 Score=34.17 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.-+..||.++-.+-.+...|+..+..|-+||..|+-+...|+..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999988876
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.92 E-value=1.8 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 88 LEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 88 L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|..+|..|+++...-+..+....
T Consensus 51 L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655554444444433
No 30
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.84 E-value=1.8 Score=29.52 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
++|.+||.++..++.-..+|..-+-....+...|..++..|...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999988888888888888888888888777755
No 31
>PRK00295 hypothetical protein; Provisional
Probab=90.76 E-value=3.2 Score=28.42 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
++|.+||.++...+.-..+|..-+.....+...|..++..|...+....
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3599999999999999999988888888888888888888877776654
No 32
>PRK04325 hypothetical protein; Provisional
Probab=90.67 E-value=3.1 Score=28.94 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
++|.+||.++...+.-..+|..-+..-..+...|..++..|...+....
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999988888888888888888888877776654
No 33
>PRK00736 hypothetical protein; Provisional
Probab=90.67 E-value=3.3 Score=28.33 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.+|.+||.++...+.-..+|..-+..-..+...|..++..|...+....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999988888888888888888888877776654
No 34
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.56 E-value=1.9 Score=30.58 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 64 MDALERKVEILKSENCD-------YKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~-------L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|.-|..+++.|...|+. +....+.|+.+|..|+++-..-+..+....
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445554444 344455677777777776554444444433
No 35
>PRK04406 hypothetical protein; Provisional
Probab=90.24 E-value=3.6 Score=28.77 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+++.+||.++...+.-..+|..-+..-..+...|..++..|...+....
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999999999888889988888888888888888888877776654
No 36
>PRK02119 hypothetical protein; Provisional
Probab=89.88 E-value=4 Score=28.30 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.+++.+||.++...+.-..+|..-+..-..+...|..++..|...+....
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36789999999999998899988888888888888888888877776654
No 37
>PRK02793 phi X174 lysis protein; Provisional
Probab=89.79 E-value=4.2 Score=28.10 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+++.+||.++...+.-..+|..-+...+.+...|..++..|...+....
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999988888888888888888888877776654
No 38
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.48 E-value=11 Score=31.16 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHhh
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIAR 135 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~~ 135 (153)
.-...+..|+.+++.|+..|..|...+..++.+...|.+++..+...- ..+.|.|......|..+++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~---------~~l~p~m~~m~~~L~~~v~~ 120 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR---------QELVPLMEQMIDELEQFVEL 120 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhc
Confidence 334445555555666666666666655555555555555554443322 25566666666666666665
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=1.7 Score=41.43 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
...+..++..++.|+.||..|+..+..|+.++..|+.+|..++..+..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888877766653
No 40
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.78 E-value=3.3 Score=29.58 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+.|-.++..|......|..++...+.||..|.++.+.|+.+|....
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777788888888888888888888888888887653
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.75 E-value=11 Score=30.56 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+....++.+++-..-..+=..-+..+..++.++..|+.++..|..++..++.|-..|.....
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777778888999999999999999999999999988777766544
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.58 E-value=2.9 Score=29.97 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
+-++.||.+|...-..+.-|+..++.|+.+|..|.++...+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888887776543
No 43
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.47 E-value=11 Score=30.03 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
-++.|-+++..|.-++..+..++..|+.||..|.++.......
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666777777777777777776554443
No 44
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.94 E-value=0.93 Score=30.79 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+|+.|.....+|..++..|+.||..|++.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555555566666666666666666653
No 45
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.86 E-value=4.7 Score=32.39 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L 95 (153)
++..|..+++.|+.+|..|
T Consensus 112 e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 46
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.58 E-value=4.4 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+.+||.++..++.....++.+++.+......+.+-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555444444444444333
No 47
>KOG4196|consensus
Probab=86.34 E-value=3.4 Score=32.26 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 87 NLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 87 ~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+|+.++..|.++++.|...+...
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555443
No 48
>PRK11637 AmiB activator; Provisional
Probab=85.96 E-value=15 Score=32.56 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
...+..|+.++..+..+...+..++..++.+...|..++..+
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555555544444444444433333
No 49
>PRK00846 hypothetical protein; Provisional
Probab=85.90 E-value=9.6 Score=27.02 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.+++.+||.++...+.-..+|...+.........|..++..|...+....
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999988888888888888888888888888887777776654
No 50
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.51 E-value=9.7 Score=30.61 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
...+..||..|+..+..|+.+|..|..++..|..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444433
No 51
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.47 E-value=14 Score=28.07 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=8.9
Q ss_pred hhhhhcCCCCCCCC
Q psy3460 17 RTLQAEGYPIPTRL 30 (153)
Q Consensus 17 ~~l~~~g~~~p~~~ 30 (153)
..|...||+-+...
T Consensus 9 ~~L~s~G~~~~~~~ 22 (151)
T PF11559_consen 9 QQLLSRGYPSDGLL 22 (151)
T ss_pred HHHHHCCCCCCCcc
Confidence 44567787766554
No 52
>KOG0996|consensus
Probab=84.81 E-value=24 Score=36.39 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhhccCCC--cchhh
Q psy3460 58 RKKKEYMDALERKVEILKSE----------NCDYKKRISNLEDTNYSL-----V-SQLNKLQAIIARHTAQLS--NVSIV 119 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~e----------N~~L~~~~~~L~~eN~~L-----~-~ql~~L~~~v~~~~~~~s--~~~~~ 119 (153)
++=...++.|+.++..++.. ...++.+|+.++.|...+ + +++..|++.+....+... ...-.
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv 909 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKV 909 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHH
Confidence 34445666677777666554 123455566666665555 4 778888887777654321 23446
Q ss_pred HHHHHhHHHHHHHHhhccccccccCCcc
Q psy3460 120 YSLVSQLNKLQAIIARHTAQLSNNQNNL 147 (153)
Q Consensus 120 ~~l~sq~~q~~~~~~~~~~~~~~~~~~~ 147 (153)
..+..|..++-+-+++-.+.|.|++.|+
T Consensus 910 ~~~~~~~~~l~~~i~k~~~~i~~s~~~i 937 (1293)
T KOG0996|consen 910 EKINEQLDKLEADIAKLTVAIKTSDRNI 937 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccH
Confidence 7778889999999999999999999886
No 53
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.61 E-value=4.4 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+..++++...+...+..++.+|..|+..++.+..-|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444
No 54
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=84.10 E-value=5.1 Score=35.04 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+|+=-+|.+.+.+..|-..|..+++.|+..|..+++++..++..+.+..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777889999999999999999999999999999999999888887653
No 55
>KOG0709|consensus
Probab=83.90 E-value=0.032 Score=51.08 Aligned_cols=90 Identities=41% Similarity=0.450 Sum_probs=75.7
Q ss_pred CCCCcccccCHHHHhhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 3 KGSTGVLHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYK 82 (153)
Q Consensus 3 ~~~~~~~~l~~ee~~~l~~~g~~~p~~~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~ 82 (153)
+|.|++. |-.+++.+..++..+|...|.+...+++.+..++++.+-.+|+..|..+.+|+..+|..+...-.++...+
T Consensus 364 ~Gvts~~--~~~s~~~~~~e~~ai~q~~~~~~~~~~~~~~~~~~~pg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 441 (472)
T KOG0709|consen 364 HGVTSRS--TLPSRRTLFLEDNAIPQELPLTKAPEKEASDIRLIIPGATSAQEGRRPHLQPMDSLEERVNPTLLERRAYE 441 (472)
T ss_pred ccccccc--cccccCceeccCccchhhcccccccccCcccchhcCCCchhhhcCCCcccCCCCchhhcccchhhhhcccc
Confidence 6778877 78889999999999999999999889999999999999999999999999999999999887766666665
Q ss_pred HHHHHHHHHHHH
Q psy3460 83 KRISNLEDTNYS 94 (153)
Q Consensus 83 ~~~~~L~~eN~~ 94 (153)
.....+...|..
T Consensus 442 ~~~~g~~~~~a~ 453 (472)
T KOG0709|consen 442 KPGEGLEETNAR 453 (472)
T ss_pred cccccccccccc
Confidence 555444444433
No 56
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.75 E-value=6.1 Score=29.42 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.+..|-.++..|......|-+....|+-||..|+..|..+..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666666666666799999999988776
No 57
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.70 E-value=8 Score=35.83 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=7.7
Q ss_pred ccCHHHHhhh
Q psy3460 10 HLTEEEKRTL 19 (153)
Q Consensus 10 ~l~~ee~~~l 19 (153)
.||+||-+.|
T Consensus 41 ~ltpee~kal 50 (472)
T TIGR03752 41 ELSPEELKAL 50 (472)
T ss_pred cCCcchhHhc
Confidence 5888887776
No 58
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=83.67 E-value=11 Score=28.93 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 45 RKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 45 R~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
|..+.|.++--.|.==+.+|..||.+...++.-|..|..+|..|+-.+...+..+..+.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56677888888888888999999999999999999999999999998888888776544
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.29 E-value=8.4 Score=29.79 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
...+.+|.+++.++.++..+...|..|...|..|-.+|..+...+...
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665555555555555555555555544443
No 60
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=82.00 E-value=4.8 Score=33.51 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNY---SLVSQLNKLQAIIA 107 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~---~L~~ql~~L~~~v~ 107 (153)
.+..||.+|++++..|+.++. .|+.+...|+.++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555554444443 44555555555443
No 61
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=81.94 E-value=0.93 Score=33.26 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
-.|+..|...+..|..+|..|+.++..|..+...+......|+..+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3689999999999999999999988888877777766666555544
No 62
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.59 E-value=8.1 Score=29.04 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.+..|=.++..|+....+|-+....|+.||..|+..|..+..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555556666666666666666666799999999887744
No 63
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.55 E-value=13 Score=26.36 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+-++.||.+++..-....-|.-.++.|.+.|..|.++...++.
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4568899999988877888888888888888888887765554
No 64
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=81.47 E-value=8.8 Score=28.33 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..+|-.+++-.+.|-.-|++.+..++.+|..|..+|.+++......
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567778888888888999999999999999999999999876544
No 65
>PF15058 Speriolin_N: Speriolin N terminus
Probab=81.42 E-value=4.4 Score=33.58 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+.|-++++.|-.||.+||+++.- -.||++|++-|.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrL-irEN~eLksaL~ 42 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRL-IRENHELKSALG 42 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 56777889999999999998864 457888887754
No 66
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=81.23 E-value=13 Score=27.08 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
||.|=...|.++..|..+|..|...++.|..+...-+.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565666666666666655555544444444333333
No 67
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.45 E-value=5 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.+..++.++..+..+|..|+.++..|
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444333
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.08 E-value=7.2 Score=25.93 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.+..|+.++..+..+|..|+.+++
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 69
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.08 E-value=48 Score=30.38 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=41.4
Q ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 51 ISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 51 ~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+++...+ ...+.....||..++.++.++..+..++.....++..+...+..+...+....
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3333333 44466678888889988888888888888877777777776666655554433
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.01 E-value=24 Score=27.35 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKS--ENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 63 yl~~LE~~v~~L~~--eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.+..|+.++..|.+ -|.+|...+..|+.++..|...|..|++
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444 2455667777777777777777776664
No 71
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.87 E-value=6.1 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
...-|+.=++.|..||..|..+++.|+++-.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4466888888999999999999999987543
No 72
>KOG3119|consensus
Probab=79.65 E-value=12 Score=31.73 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
-.....+++.++..|+.||..|+.++..|+..+..+.
T Consensus 213 ~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 213 RKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999999988887766543
No 73
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.63 E-value=17 Score=27.34 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
...+.+-..|+.+...+..++..|..+|.-|-+||+.
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556666666777777777777777666653
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.91 E-value=24 Score=29.12 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++-+++|-.-+..|+.+|..|..+...++.|+..|..++..|+.--.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777888888877777777777777777766665333
No 75
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.53 E-value=6.7 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.|+..-..|+.....|..++..|..+...|++.|....
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777777777666543
No 76
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=78.29 E-value=16 Score=25.55 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
.+.|..+..|..||=.|+-+|..|+
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLe 27 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLE 27 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455556666666666555555443
No 77
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.05 E-value=4.6 Score=27.45 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
.|...|+.+|..|+..|..|..+...|++.+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35566888888888888888888877776554
No 78
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.04 E-value=7.2 Score=32.44 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRIS---NLEDTNYSLVSQLN 100 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~---~L~~eN~~L~~ql~ 100 (153)
.-....+|..+.+.|+.||.+|+.++. .++.||..|+..|.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777888888888888877666 67889999988775
No 79
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.92 E-value=13 Score=34.60 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSE-------NCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 64 l~~LE~~v~~L~~e-------N~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
..+||.+++.|+.| ...+..+|+.|+.+|..|+.+++.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666544 456777777777888888777743
No 80
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=77.89 E-value=9.5 Score=26.24 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
+..||.++..| -..++.|+.||..|++++..+.+-
T Consensus 2 L~~Le~kle~L-------i~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 2 LQALAAQVEHL-------LEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666554 455555556788887777766543
No 81
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.61 E-value=4.5 Score=29.29 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
|+.+++.|...+..+..+|..|..++..++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778899999999999999888887776553
No 82
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.45 E-value=13 Score=27.32 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
...++.++..++.+|..|+.+...|..+...|+..-..+.....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34566666666666666666555555555555543333333433
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.03 E-value=13 Score=30.70 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
-|++|+..-..|..+|..|+..+..++..|..|..++..|+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~ 49 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR 49 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888876666655555444333
No 84
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.52 E-value=19 Score=23.67 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
..|+.+...|..++..|...+..|..
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333
No 85
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.44 E-value=21 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 69 RKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 69 ~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
.++......|..+..++...+..|..|..++..|...+.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666555556655555555554443
No 86
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=76.34 E-value=8.4 Score=29.01 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.|+.++..|++||..|+-+++-|-..++.
T Consensus 76 rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555544443
No 87
>PRK11637 AmiB activator; Provisional
Probab=76.20 E-value=52 Score=29.19 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..-+..++.++..++.+...+..++..++.+...+..++...+
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555444444444333
No 88
>PRK14127 cell division protein GpsB; Provisional
Probab=76.13 E-value=12 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+|++.+-..++.|..+|..|+.++..|+.+...+..++.
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566776677777777777777655555544444444443
No 89
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=76.04 E-value=4.6 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCD----------YKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~----------L~~~~~~L~~eN~~L~~ql 99 (153)
++|+|.++...-..|.- |+..++.|+.|...|++++
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444443 4444444555555555555
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.53 E-value=44 Score=27.47 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+...+|..++........+|+.+.+.|.+++..++.++..+.+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 91
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=75.40 E-value=17 Score=26.31 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRIS------NLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~------~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.....|..|..-|+.++. ....||..|+.++..|+++..
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666666666554 356789999999999988773
No 92
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.37 E-value=6 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.-+++|..++..|+.||..|+.++.
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777766554
No 93
>smart00338 BRLZ basic region leucin zipper.
Probab=75.11 E-value=18 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
....|..++..|+.+|..|..++..|...+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666665555443
No 94
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.11 E-value=9.3 Score=32.60 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q psy3460 72 EILKSENCDYKKRISNLEDT----NYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~e----N~~L~~ql~~L~~~v~~ 108 (153)
..+..||.+|+.++..|..+ ...|++++.+|+.++.-
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666666665544222 22355666666665544
No 95
>KOG0995|consensus
Probab=75.07 E-value=58 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+.|+..++.+...++.....|+..++.-+.|+..|+.+...|+..|..+
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666666666666666666666666666666655544
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.00 E-value=41 Score=35.32 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=53.5
Q ss_pred HHHhhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 14 EEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNY 93 (153)
Q Consensus 14 ee~~~l~~~g~~~p~~~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~ 93 (153)
|...-|...||+.+.+ ++ ...+..+..+-++.++.++|. ..||.+....+.+...|..++..++.+-.
T Consensus 1038 E~eqe~~~~g~~~~~~-----~~-~~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~re~EIe~L~kkL~~~~~e~~ 1105 (1486)
T PRK04863 1038 ELKQELQDLGVPADSG-----AE-ERARARRDELHARLSANRSRR------NQLEKQLTFCEAEMDNLTKKLRKLERDYH 1105 (1486)
T ss_pred HHHHHHHHcCCCCCcc-----HH-HHHHHhHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567789888663 22 222333467788888877764 56777777777777778777777777777
Q ss_pred HHHHHHHHHHH
Q psy3460 94 SLVSQLNKLQA 104 (153)
Q Consensus 94 ~L~~ql~~L~~ 104 (153)
.++.++...+.
T Consensus 1106 ~~re~I~~aK~ 1116 (1486)
T PRK04863 1106 EMREQVVNAKA 1116 (1486)
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.87 E-value=47 Score=30.92 Aligned_cols=15 Identities=40% Similarity=0.341 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDY 81 (153)
Q Consensus 67 LE~~v~~L~~eN~~L 81 (153)
|+.+.+.|..||..|
T Consensus 78 l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 78 LISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 98
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.23 E-value=36 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCD 80 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~ 80 (153)
.|..++-.|..+|..
T Consensus 48 ~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 48 ELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 99
>PHA03155 hypothetical protein; Provisional
Probab=73.94 E-value=5 Score=30.61 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
-+++|+.++..|+-||..|+.++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888888888888888887743
No 100
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.92 E-value=36 Score=25.69 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|+..+..|+.++.++-+.+..|++-|.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 101
>KOG4797|consensus
Probab=73.61 E-value=28 Score=26.61 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
..+|+.|.....+|.+++..|+.||.-|+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666667766654
No 102
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.45 E-value=13 Score=31.00 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCcchhhHHHH-HhHHHHHHHHhhccccccccC
Q psy3460 81 YKKRISNLEDTNYSLVSQL---NKLQAIIARHTAQLSNVSIVYSLV-SQLNKLQAIIARHTAQLSNNQ 144 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql---~~L~~~v~~~~~~~s~~~~~~~l~-sq~~q~~~~~~~~~~~~~~~~ 144 (153)
|+.++.++++-...|..|| .++-+++.....-..++|+.+.++ -|+.-.+.++++-|..||=..
T Consensus 78 lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q~Gl~sgL~fd~~~p~~~v~k~fy~elPisi~v~G 145 (211)
T COG3167 78 LRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQAGLSSGLTFDLFMPQPEVDKEFYAELPISISVTG 145 (211)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHhhhccCceeeccCCCchhhhhhHhhcceEEEEcc
Confidence 4444444554544444444 244455555443344456655554 677888889999998887543
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.36 E-value=83 Score=30.51 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
.+||.++..|..|.....+++..|+.+...|+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554555544444444333
No 104
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=73.08 E-value=13 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.....|...+..|+.+|..|.+++..|.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677777778888888888777665
No 105
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=73.07 E-value=19 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..+..++..++.+|..|+.+..
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 106
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.61 E-value=15 Score=34.03 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~ 85 (153)
.++|.+++.|+.+|..|+.++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 107
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=72.60 E-value=46 Score=29.29 Aligned_cols=80 Identities=25% Similarity=0.262 Sum_probs=60.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--------cchhhHHHHHhHH
Q psy3460 56 SRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLS--------NVSIVYSLVSQLN 127 (153)
Q Consensus 56 SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s--------~~~~~~~l~sq~~ 127 (153)
-|++..+..++|+.+.+.+..+|...+..+..|......|..-...++..+.-...... .....+.+|.|..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~~~~~~~~~a~~LP~PLyvLY~ql~ 181 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHTKKRKQHELAELLPPPLYVLYSQLQ 181 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccchhhhHHHHHhCCccHHHHHHHHH
Confidence 36667788899999999999999999999999999999999888888887754332210 1244567777777
Q ss_pred HHHHHHhh
Q psy3460 128 KLQAIIAR 135 (153)
Q Consensus 128 q~~~~~~~ 135 (153)
..+..+.-
T Consensus 182 ay~ea~~~ 189 (355)
T PF09766_consen 182 AYQEAFDD 189 (355)
T ss_pred HHHHHhcC
Confidence 66665544
No 108
>PHA03162 hypothetical protein; Provisional
Probab=72.58 E-value=5.8 Score=31.00 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
++..-|++|..++..|+-||..|+.++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999988773
No 109
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.47 E-value=19 Score=31.14 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+++.++.|...|..++..|+.+...|.++
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~e 79 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 110
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=72.39 E-value=27 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+.+-+..|+.+++.++.+...|..++..++.+...|+..+..++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777777777777777777777777777777776654
No 111
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.78 E-value=12 Score=31.97 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS----NLEDTNYSLVSQLN 100 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~----~L~~eN~~L~~ql~ 100 (153)
.+.+|..+.+.|..++.+|..+.. .++.||..|+.-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677788888888777644444 48899999998775
No 112
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=71.50 E-value=20 Score=26.06 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
.|.+|+.++..+..||..|+.++.....|...|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444444443
No 113
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=71.28 E-value=50 Score=27.37 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+...+|.||-...++++-.-+-+ -|.+.-.+++....|...|+.-.+.|+.+|+.|+.-.-
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44678999999999998776654 45555666666666777777777777777777765433
No 114
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.94 E-value=58 Score=26.83 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
..-+.|...|+..+...+.+..+|..++..++.....|.--+..
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888888888888777776666554433
No 115
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.84 E-value=56 Score=26.60 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
++..+..|...+..+..++..++.++..+...+...+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 116
>KOG4343|consensus
Probab=70.55 E-value=4.7 Score=38.20 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
+.++..|+.+-+.|..||..|+.++..|..||..|
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 33444455555555555555555555555554444
No 117
>KOG1853|consensus
Probab=70.16 E-value=35 Score=29.87 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 55 ESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 55 ~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
....--.+|-..||.++.+++..|..|..+++.|..|...++..+
T Consensus 38 EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 38 EFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677777777777777777766666655555555444
No 118
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.67 E-value=52 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+-+|..++..|..|..+|+.+++.+.-+...+.++-
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356666777777777777777776666665555443
No 119
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.61 E-value=32 Score=23.29 Aligned_cols=49 Identities=24% Similarity=0.218 Sum_probs=30.9
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 48 KNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 48 kNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
+.+.+.+.-=.+=+.-.-.++.+++..+..|..|..+|..|+.+...++
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333443333334555567788888888888888887776666665554
No 120
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=68.92 E-value=56 Score=25.87 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 55 ESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 55 ~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
..|++....+..+|. .+..++..|..++..|+.+|..|...+..+...+
T Consensus 71 ~~r~~~e~~l~~~Ed---~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 71 ELRKQAEEELLELED---QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 334444444454453 5677889999999999999999987776555443
No 121
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.49 E-value=43 Score=26.65 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
|+..+..|..+...|...+.....-+..|..++..|+
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444333
No 122
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.47 E-value=66 Score=30.73 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhccC
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISN----------LEDTNYSLVSQLNKLQAIIARHTAQ 112 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~----------L~~eN~~L~~ql~~L~~~v~~~~~~ 112 (153)
..+++.+.+||..+..+..+..+...-+.. .-.+|..|+++|..|+..+-..++.
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888876655544333333 3366888888888888766655543
No 123
>PF14645 Chibby: Chibby family
Probab=68.24 E-value=15 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.++..|+.+++.|++||..|+-+++-|-..++..
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777776666666665543
No 124
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.19 E-value=59 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhccCCC-----cchhhHHHHHhHHHHHHHH
Q psy3460 96 VSQLNKLQAIIARHTAQLS-----NVSIVYSLVSQLNKLQAII 133 (153)
Q Consensus 96 ~~ql~~L~~~v~~~~~~~s-----~~~~~~~l~sq~~q~~~~~ 133 (153)
+.++++|+..|..+-+..+ ---||...+-|-..|-.++
T Consensus 123 RkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHH
Confidence 4444555555544432222 1255777777766665544
No 125
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=39 Score=25.83 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
..|.+-+.+|+.+++.|+.+...|..+-+.++.+...|++.
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766665555555444444444444433
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.40 E-value=52 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=15.8
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 48 KNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 48 kNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
..|+.......+...-+..|+..+..|+..+..+..++.
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333334444444444444444444444433333
No 127
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.03 E-value=1.1e+02 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 45 RKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKR 84 (153)
Q Consensus 45 R~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~ 84 (153)
.+++-..........-+..+..|+..+...+.++..|..+
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544444444444333
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.96 E-value=57 Score=25.17 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
-+..||.+...++.+...|..++..|+.+...+..+|..+...+...
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555555555555555555555555555555443
No 129
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.50 E-value=32 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
....+..++.++..++.+|.+|+.++..|.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566677777777777777776665544
No 130
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.49 E-value=30 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDY--KKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 68 E~~v~~L~~eN~~L--~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+.++..++.+...| ...++.|+.+...++-++..+.+.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333 3333334444444444444333333
No 131
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.11 E-value=34 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.+..+...|..++..+..+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555666666666555
No 132
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=66.04 E-value=41 Score=23.35 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
-..+|..|..++..|......|-.+
T Consensus 40 t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 40 TSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333333
No 133
>KOG3584|consensus
Probab=65.85 E-value=23 Score=31.31 Aligned_cols=13 Identities=31% Similarity=0.212 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy3460 86 SNLEDTNYSLVSQ 98 (153)
Q Consensus 86 ~~L~~eN~~L~~q 98 (153)
+.|++....|..|
T Consensus 315 KCLENRVAVLENQ 327 (348)
T KOG3584|consen 315 KCLENRVAVLENQ 327 (348)
T ss_pred HHHHhHHHHHhcc
Confidence 3444444444433
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=65.80 E-value=31 Score=29.02 Aligned_cols=64 Identities=6% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
....+..|++..+-.++ --=...|++|..+|..|.-+++++..+++.+....+.|-.+|..+..
T Consensus 40 ~r~~~le~~~~~~~~~~---~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 40 DRVTQLERISNAHSQLL---TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555554433222 12256789999999999999999999999999999999988876543
No 135
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=64.91 E-value=41 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
+..|+.++..+..++..|+..+..+.++...|+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333
No 136
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.41 E-value=49 Score=26.89 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+..|.++..+|..++..+..||..|+..-..-...+.
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~ 50 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ 50 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666654443333333
No 137
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.12 E-value=25 Score=31.35 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..|+.++..|+.++..|..+...+..+...++.++..|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555666666655555556666666666554
No 138
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.07 E-value=64 Score=31.26 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
+..+..+|+.|...|+..+...+++...|..++..|+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555544444443
No 139
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=63.07 E-value=20 Score=25.50 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..+..||..|+.+++.|++|.+.++...+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45777888888888888777777666544
No 140
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.97 E-value=48 Score=22.98 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
.+.+..|+.+.+.++.+...|......+..+...+...|
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555555555555555544444443
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.61 E-value=37 Score=30.02 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
+..|-.||..|++++..+++|...+++-+.+++..+..
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33457799999999999999999999999999998884
No 142
>PF15294 Leu_zip: Leucine zipper
Probab=62.45 E-value=82 Score=27.38 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy3460 67 LERKVEILKSENCDYKKRISNLE-------DTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~-------~eN~~L~~ql~~L~~~v~~~ 109 (153)
|..++..|..||..|+.++..++ .|+..|..+|..|+...+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~ 179 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ 179 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777777777777766655 34566666777777644433
No 143
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=61.84 E-value=46 Score=22.33 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
|+.|...|..|......|...+..|..+....+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444444444444333333
No 144
>KOG1103|consensus
Probab=61.58 E-value=58 Score=29.89 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------------------
Q psy3460 51 ISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQ------------------ 112 (153)
Q Consensus 51 ~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~------------------ 112 (153)
.+|...|+|--+.-.+.|..++.+..|-..|+.+++.++..-.+|+.+...|+..|.+...+
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvsk 306 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSK 306 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccCceeecc
Confidence 45666667666655555556666666666666665555555555555555555444432211
Q ss_pred --CCcchhhHHHHHhHHHHHHHH
Q psy3460 113 --LSNVSIVYSLVSQLNKLQAII 133 (153)
Q Consensus 113 --~s~~~~~~~l~sq~~q~~~~~ 133 (153)
....-.+.++|-|+..+++.-
T Consensus 307 gtateplmlmsvfcqtesfpaer 329 (561)
T KOG1103|consen 307 GTATEPLMLMSVFCQTESFPAER 329 (561)
T ss_pred ccccchhHHhhhhhhcccCchhh
Confidence 111123577777887776653
No 145
>KOG0977|consensus
Probab=61.48 E-value=1.5e+02 Score=28.17 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+.+||.++..+...+..|...+..|..+|..|..+|..++..+
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344444444444444444444445555555555555444433
No 146
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.29 E-value=33 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.||..|...|+.+.+++..|+.++..|.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~ 152 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELK 152 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555444333
No 147
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.81 E-value=44 Score=28.76 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~e 91 (153)
++-.++..+..||.+|...+..|+.+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 148
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.38 E-value=76 Score=24.37 Aligned_cols=51 Identities=10% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
..+|+.|..++.....-....+.++..+......+...+..++..|....+
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888877777778888888888888888888888777776554
No 149
>KOG2483|consensus
Probab=60.35 E-value=26 Score=29.56 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+|.++||..|+.+........ +.|..++..|+.+|.+|..
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~-------e~l~~e~~~l~~rl~ql~~ 140 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDI-------EDLSRENRKLKARLEQLSL 140 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Confidence 677889988888776655444 4445588888888877763
No 150
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.33 E-value=54 Score=26.45 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
...|..-|.-|+.+++.....|..|...+..|..-+
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666555433
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.13 E-value=93 Score=25.30 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
...+..+..++.++..+..+...++.++.........++..+...+..+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666666665554443
No 152
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.89 E-value=63 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+-+.+|+.+++.++.....|..+...|+.....+..++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555545444444443
No 153
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.73 E-value=1.3e+02 Score=27.21 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=39.0
Q ss_pred HHHHHhhHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy3460 44 RRKIKNKISAQE-SRRKKKEYMDALERKVEILKSENCDYKKRISNLED-------TNYSLVSQLNKL 102 (153)
Q Consensus 44 rR~lkNR~SAq~-SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~-------eN~~L~~ql~~L 102 (153)
--+++|-.--.+ -=.|-|.....||.-+..++.||..|..++..+.. |++.|..++.+.
T Consensus 108 nqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 108 NQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 344555433222 22567788899999999999999998888877654 455555555443
No 154
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.54 E-value=67 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRI--SNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~--~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
++.+..|+..+..|+.+...|.... ..|......|..++..|.+.+.....
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666655544 35667778888888888888776554
No 155
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=58.44 E-value=40 Score=29.94 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 61 KEYMDALERKVEILKSENCDYKK----------RISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~----------~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
.+|++.|+.++..++.+..+|.. ++..++.+...+..++..+..+++....
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777777776666655 4666777777777777777777665544
No 156
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=57.56 E-value=14 Score=23.40 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKK 83 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~ 83 (153)
+.+||.++..|..||..|+.
T Consensus 23 i~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 23 IQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp -------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 157
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.11 E-value=79 Score=23.59 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNY 93 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~ 93 (153)
-+-.+|.++..|...|..|..++..|+.|..
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666665555544
No 158
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=57.03 E-value=39 Score=23.72 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
..+.+.+..+...|+.||..|+-+...+
T Consensus 41 ~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 41 FYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555554443
No 159
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.60 E-value=96 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+...+..|...|+.+++..+.+...|+.|.+.+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666655544
No 160
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.95 E-value=1.1e+02 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..+|+.++..|+.++..|..++..|+.....+........
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~ 161 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666655555544433
No 161
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.80 E-value=1.1e+02 Score=24.66 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
...+..|+.+...|+.+...|+.+++.++..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 162
>KOG0971|consensus
Probab=55.78 E-value=93 Score=31.79 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 44 RRKIKNKISAQESRRKKKEYMDA---LERKVEILKSEN-------CDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 44 rR~lkNR~SAq~SR~RKKeyl~~---LE~~v~~L~~eN-------~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|++.+-|..|...-.=|-+|..+ +-+-++.++-+. ..|...++.+.+.+..|.-.|+.|++-.....
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556666665555545444443 333333322211 12334444444444444445555555555443
No 163
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=55.56 E-value=73 Score=22.67 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
...+..|...+..|-......+..+..|..||..|..=+..|-
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666667777777777779988888776654
No 164
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=55.42 E-value=59 Score=26.55 Aligned_cols=51 Identities=27% Similarity=0.474 Sum_probs=38.9
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 47 IKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 47 lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
++-|.++..-|.+-+.|..+||.+=..|.....-.++++..|+..|..+-.
T Consensus 119 ~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~yk 169 (187)
T PF05300_consen 119 LRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFYK 169 (187)
T ss_pred HHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777888888888888888888888888888888876643
No 165
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.31 E-value=80 Score=23.06 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEIL--KSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 61 Keyl~~LE~~v~~L--~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..++..+|.++..| ..+...|+-.+..++-+...|..+++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444 33333444444444444444444433
No 166
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.07 E-value=38 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+..+...|+.+...|..+|..|+.++
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666777776665
No 167
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.07 E-value=1.1e+02 Score=24.58 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 52 SAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 52 SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
..+.|+++.++|-+.||. +.....+-..|-.++-.|..+-..++
T Consensus 103 l~~~cqKKEkEykealea-~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEA-FNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777999999887 44455566667777777766666554
No 168
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=54.93 E-value=92 Score=26.31 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKK-KEYMDALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RK-Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
.....+|-..|.|..--...-|+ +.-+..|..+++.|...|-.|.+++.-|+.=+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34567777777777776666555 77789999999999999999999998887544
No 169
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=54.86 E-value=50 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.-+..|+.++..|..+|.+|+.++..++.++....+-+..+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888877777776665554433
No 170
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=54.74 E-value=79 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
++..+..+|..|..+.+.|..|...-..+++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444445444444444
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=54.10 E-value=73 Score=28.45 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.|+.....++.++..|..++..+..+...++.++..++..+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666666666666666666666665543
No 172
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=53.80 E-value=54 Score=22.63 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
+-..+..|-.||..|+. .|..-|.+++++...|...-..
T Consensus 4 ~~~~l~~LL~EN~~LKe---alrQ~N~~Mker~e~l~~wqe~ 42 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKE---ALRQNNQAMKERFEELLAWQEK 42 (68)
T ss_dssp ---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999995 6677888888887776654433
No 173
>KOG0243|consensus
Probab=53.74 E-value=2.7e+02 Score=28.64 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHhhHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 42 KIRRKIKNKISAQESRR-----------------KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~-----------------RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
-.--++|+.++|.+... -+-+.+++||.++..+..+...+.+..-.....+..|..++..++.
T Consensus 411 ~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~ 490 (1041)
T KOG0243|consen 411 EEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKS 490 (1041)
T ss_pred HHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44456788888866431 1233455555555555555444444444333444455555555554
Q ss_pred HHHh
Q psy3460 105 IIAR 108 (153)
Q Consensus 105 ~v~~ 108 (153)
.+..
T Consensus 491 ~L~~ 494 (1041)
T KOG0243|consen 491 KLQN 494 (1041)
T ss_pred HHHH
Confidence 4433
No 174
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.39 E-value=43 Score=23.86 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=3.0
Q ss_pred HhhHHHH
Q psy3460 48 KNKISAQ 54 (153)
Q Consensus 48 kNR~SAq 54 (153)
+|.+|.+
T Consensus 52 rN~~sk~ 58 (108)
T PF02403_consen 52 RNELSKE 58 (108)
T ss_dssp HHHHHHH
T ss_pred HhHHHHH
Confidence 4444443
No 175
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=52.82 E-value=56 Score=28.78 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.+|.+-......+|..|.++...|..+++.+..||..|.+.|...
T Consensus 223 a~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 223 ARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566666677777778888888888888888888888887777543
No 176
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=52.71 E-value=1e+02 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEIL 74 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L 74 (153)
..++.+|...++|+ ++|++|+.+|..+...+
T Consensus 4 ~~Le~ek~~~~~rI------~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 4 EELEEEKQRRRERI------KKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34455555555555 45888888888776554
No 177
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.12 E-value=39 Score=30.56 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
-.|..+-..|..||++|+.+++.|++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666633
No 178
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=52.09 E-value=76 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.+..|..-+..|+..|..|..++..|-..|+..+.++++
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777888888888888888887777654
No 179
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=51.63 E-value=1.8e+02 Score=25.95 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 39 SLKKIRRKIKNKISAQESRRKKKEYMDALE-------------------------RKVEILKSENCDYKKRISNLEDTNY 93 (153)
Q Consensus 39 ~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE-------------------------~~v~~L~~eN~~L~~~~~~L~~eN~ 93 (153)
..++.|+++++||....+=+||--.+..=+ .+|--|..++.+|++++..++.|..
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999888843332222 2333345566666666666666655
Q ss_pred HHHHHHH
Q psy3460 94 SLVSQLN 100 (153)
Q Consensus 94 ~L~~ql~ 100 (153)
.+...|.
T Consensus 200 ~~~k~L~ 206 (323)
T PF08537_consen 200 ITKKDLK 206 (323)
T ss_pred HHHHHHH
Confidence 5544443
No 180
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=51.47 E-value=1.3e+02 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 83 KRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 83 ~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
.++..|+-++..|.+++..+..-
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 181
>PF14282 FlxA: FlxA-like protein
Probab=51.43 E-value=93 Score=22.69 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 82 KKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 82 ~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..++..|..+...|..+|..++.....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666654444
No 182
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=51.28 E-value=44 Score=28.89 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVE-ILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLS 114 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~-~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s 114 (153)
+++-|.|..-.-+-+-.+||++--.+|..+.. .+-.|..+|..+...|+.+...|++++..---...++++..+
T Consensus 185 ~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~ 259 (289)
T COG4985 185 EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETV 259 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEe
Confidence 34445555555555666777777777777643 466677777777777777777777776643333344444444
No 183
>KOG0996|consensus
Probab=51.12 E-value=2e+02 Score=30.02 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=47.3
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 48 KNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 48 kNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
+-=.+.+.+-++++.-+.+++..+..+..+..+....+..+..+-..|.+++..++..+.....
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667888888888888888888888888888888887777777777666666655443
No 184
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.10 E-value=76 Score=27.94 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
++.+++.|...+..|...+..+..+...|+.++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444333
No 185
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.06 E-value=1.1e+02 Score=23.25 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
|...+..++.|...|+.++..|..+-..|.++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 186
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=51.03 E-value=53 Score=28.08 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDY---KKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L---~~~~~~L~~eN~~L~~ql 99 (153)
..++..+.+.|+.++.++ ..++..|++||..|+..|
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444333 333344555555555544
No 187
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.98 E-value=83 Score=22.00 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHhhcccccc
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIARHTAQLS 141 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~~~~~~~~ 141 (153)
.|..-+..|+.|...|+-+...|.+.+..... ..+....-.|......+...+..+..||+
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~-s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDP-SLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777777777777666666543 33455667776667777777777777775
No 188
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.96 E-value=74 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..+|-+|+..+..|..++..++..|..+.
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 189
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=50.91 E-value=50 Score=24.27 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..++.++.+|+.++..|+.||..|+.-+.
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766654
No 190
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.29 E-value=70 Score=28.15 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+..|+..+..++.++..|+.++..|..+...++.++..++..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777777777777777777643
No 191
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=50.13 E-value=29 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.+|..++..|+-||..|+.++..
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777778888899999988863
No 192
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=50.07 E-value=1.4e+02 Score=24.16 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLE---DTNYSLVSQLNKLQ 103 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~---~eN~~L~~ql~~L~ 103 (153)
-|+=.|.++..|..+|..|+.++..|- .+|..+...+..+.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777664 44666666555444
No 193
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=50.03 E-value=5.4 Score=33.84 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
|.+|..-|..|.++|..|+..++.|..+|..|
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555655555555555555544
No 194
>PRK12704 phosphodiesterase; Provisional
Probab=49.83 E-value=2.2e+02 Score=26.52 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy3460 67 LERKVEILKS 76 (153)
Q Consensus 67 LE~~v~~L~~ 76 (153)
|+.+...|..
T Consensus 98 Le~r~e~Lek 107 (520)
T PRK12704 98 LDRKLELLEK 107 (520)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 195
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=49.57 E-value=95 Score=25.07 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql 99 (153)
+...++.|++++..+..+.
T Consensus 46 itk~veeLe~~~~q~~~~~ 64 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREF 64 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 196
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.42 E-value=1e+02 Score=27.31 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVS 97 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ 97 (153)
++.++..|..+|..|+.
T Consensus 46 ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 46 EKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 197
>KOG0977|consensus
Probab=48.98 E-value=1.3e+02 Score=28.53 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 53 AQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 53 Aq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|.+.+..=.+-+.+.+..+..++.+...++.++..|+.+...|+.+...|...+...-
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344444444555666667777777777777777777777777777777777766654
No 198
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.97 E-value=2.4e+02 Score=26.80 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..|+.+.+.+...+..|......|..++..++..+..|.
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333333333333
No 199
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.89 E-value=1.2e+02 Score=23.28 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
-..|.-++..|+..-..|..++..|++.+....+
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555555555556666666665555443
No 200
>KOG0933|consensus
Probab=48.78 E-value=2.4e+02 Score=29.19 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 46 KIKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 46 ~lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..+.|..+...+ +++..-.+.|..+.+.++.+...++.++..+......|..++..|.+-+..
T Consensus 798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334454444444 223334455666666666666666666666666666666666555554443
No 201
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=48.78 E-value=52 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..+-..|..++..++.+|..|..++..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667788888888999999998887654
No 202
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.75 E-value=1.8e+02 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.+...++.+.++...+..++..+...+..+
T Consensus 241 ~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 241 ELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444433
No 203
>PRK02224 chromosome segregation protein; Provisional
Probab=48.69 E-value=1.7e+02 Score=28.14 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 56 SRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 56 SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+..++.+.+.+++.++..+..+...|...+..|+.....+..++..++..+...
T Consensus 586 ~~~~~le~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 586 ERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566666666666666666666666655666666666666666553
No 204
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=48.52 E-value=2.9e+02 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAII 133 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~ 133 (153)
.|+..|.+.+..+..+...|..++.-+...++...+.....-+.....|+..+++++.
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~a 831 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKA 831 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777777777777777777776654443444444455566665543
No 205
>KOG0976|consensus
Probab=48.50 E-value=3.2e+02 Score=27.97 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 35 TEEKSLKKIRRKIKNKISAQESRRKK-KEYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 35 ~eek~~Kr~rR~lkNR~SAq~SR~RK-Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
++.+..+++-|.+.|+..-..+-+-+ ++-+..++...+.-+.+...+..+++.|+.
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566677778888877666655444 445555555555555554444444444433
No 206
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=48.46 E-value=96 Score=23.00 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=36.7
Q ss_pred HHHHHHHHhhHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESR--------RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR--------~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
.+.+|++-...++-..- ..-..-+..+..+++.+..+|..|..+...|+.++..|.+....+....
T Consensus 21 ~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~A 94 (117)
T COG2919 21 VRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERA 94 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34445555555554432 1112334455556666777777777777777777777776644444333
No 207
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=47.97 E-value=88 Score=23.61 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNL--EDTNYSLVS 97 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L--~~eN~~L~~ 97 (153)
..+++.++.+-+.+..|...|..+++.| +.+...|.+
T Consensus 41 ~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les 79 (109)
T PF11690_consen 41 YDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALES 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5678889999999999999999988888 555555544
No 208
>KOG0250|consensus
Probab=47.91 E-value=2.8e+02 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|..+++.++..+..|+.++..+...+.
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444443
No 209
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=47.50 E-value=52 Score=31.22 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
+||+++-..++.|+.+|..+..++..++.+....+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~ 404 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYR 404 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444444333
No 210
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.38 E-value=1.8e+02 Score=27.03 Aligned_cols=80 Identities=8% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhhHHHHHhHHHHHHHHhhcccc
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA---QLSNVSIVYSLVSQLNKLQAIIARHTAQ 139 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~---~~s~~~~~~~l~sq~~q~~~~~~~~~~~ 139 (153)
.+.++..++..+..+-..+...+..|+..-...+..+..++..+..... ....++++..+..........+.+-...
T Consensus 384 ~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~ 463 (569)
T PRK04778 384 ELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEE 463 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666665555555555555544433221 1222345555555555555555554445
Q ss_pred ccc
Q psy3460 140 LSN 142 (153)
Q Consensus 140 ~~~ 142 (153)
|+.
T Consensus 464 L~~ 466 (569)
T PRK04778 464 LEE 466 (569)
T ss_pred hcc
Confidence 544
No 211
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.34 E-value=1.2e+02 Score=22.95 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..++..+-.++..|...+.....++..+...+..|...+-.+-..+.
T Consensus 50 ~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 50 RERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888777777888888888888888777765555444
No 212
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=47.32 E-value=1.6e+02 Score=24.09 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.||.+-..+...|-++...+..|+.+...|+.+..
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 213
>KOG3335|consensus
Probab=46.47 E-value=35 Score=27.93 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 40 LKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 40 ~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
..|..|..+++ -...+..+.+|..++..|+.+..+++..+..|-
T Consensus 90 y~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 90 YWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665554 233344555666666666655555555444444
No 214
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.45 E-value=88 Score=20.96 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 69 RKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 69 ~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
.++..|.++.+.|..++..|..+...|+..+...+.-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888777655543
No 215
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.20 E-value=1.4e+02 Score=23.29 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=26.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy3460 56 SRRKKKEYMDALERKVEILKS---ENCDYKKRISNLEDTNY 93 (153)
Q Consensus 56 SR~RKKeyl~~LE~~v~~L~~---eN~~L~~~~~~L~~eN~ 93 (153)
.+.--+.-+.+....+..|.. -|.+|+.++..|+.+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334445556666666777766 67778888888888877
No 216
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.91 E-value=1.3e+02 Score=25.85 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 82 KKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 82 ~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
+.++..+..+...+..+...+.+.|..
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444443
No 217
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.70 E-value=91 Score=26.11 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
..||.-++.++++.......+..+..+...|+.++..++.-
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666667777777776666544
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.56 E-value=97 Score=21.21 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy3460 90 DTNYSLVSQLN 100 (153)
Q Consensus 90 ~eN~~L~~ql~ 100 (153)
.+|..|+.++.
T Consensus 47 ~e~~~Lk~E~e 57 (69)
T PF14197_consen 47 EENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 219
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=45.45 E-value=1.2e+02 Score=26.88 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.+|.++|.++..++....++...+..++.....|.+.+..|...+...
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 467777777777777777777777777777777777777777666543
No 220
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=45.30 E-value=32 Score=24.87 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy3460 89 EDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 89 ~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..+|..|+.+++-|+..|...
T Consensus 23 ~~e~~~L~eEI~~Lr~qve~n 43 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQVEHN 43 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344555555555555555443
No 221
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=45.30 E-value=1e+02 Score=22.12 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..|+.++..+..+-..|...+..+..+...|...+.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 222
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=45.00 E-value=25 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYK 82 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~ 82 (153)
+-++.+||.+|..|..-|..|.
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHH
Confidence 3457778888888777777764
No 223
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.53 E-value=1.7e+02 Score=28.07 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
|+.+.+|+.....|+++|.+|...+..-+--+..|...+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl 204 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKL 204 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 667777777777777777666555544333333343333
No 224
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.51 E-value=1.4e+02 Score=26.00 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 61 KEYMDALERKVEILKSENCD-------YKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~-------L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|.-+++||..+..+..++.+ ++..+..|..+...|+.+|.....+|..+
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44455555555555544433 33333444555555555555555555543
No 225
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=44.50 E-value=2.8e+02 Score=26.78 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHhhcccccc
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIARHTAQLS 141 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~~~~~~~~ 141 (153)
-.+...++..|-..|..++..+.....-+....... -...+-.+..+.+.+.+.+.++...++
T Consensus 405 v~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~k-l~P~~~~V~~~s~~l~~~ie~E~~~f~ 467 (632)
T PF14817_consen 405 VSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQRK-LVPQFEAVAPQSQELRDCIEREVRAFQ 467 (632)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhcc-cCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455555666667777777766655554443211 113344457788888888888655543
No 226
>PRK02224 chromosome segregation protein; Provisional
Probab=44.33 E-value=3e+02 Score=26.49 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 56 SRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 56 SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.....+..+..|+.++..+......+..++.........|..++..|
T Consensus 503 ~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444445555555554444433333333333333333333333
No 227
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.09 E-value=1.3e+02 Score=22.36 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy3460 36 EEKSLKKIRRK 46 (153)
Q Consensus 36 eek~~Kr~rR~ 46 (153)
|.+..|-+-++
T Consensus 53 d~~VYk~VG~v 63 (121)
T PRK09343 53 DTPIYKIVGNL 63 (121)
T ss_pred cchhHHHhhHH
Confidence 34445555553
No 228
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.06 E-value=1.1e+02 Score=21.51 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
++|.+||.++..-+.-..+|...+.+.......+..+|..|-..+...
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888887777777777766666666666666665555555443
No 229
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=44.01 E-value=1.3e+02 Score=24.41 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+++..|..+.+.|..+|..|+.+....+.+-..|..-+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554443
No 230
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.89 E-value=51 Score=25.51 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
+..|+.++..-.+|...|+.++..+...|..|..
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666677766666666666543
No 231
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.88 E-value=1.5e+02 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENC 79 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~ 79 (153)
-+++|..++..|+..|.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 232
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.86 E-value=2.3e+02 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
.+...+...|..|...|+.++.+++-++..|+..+...+...
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 334444555566666666666666667777777776655544
No 233
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=43.78 E-value=68 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
|+.+++.|..+...+..+...++.+...+++++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444445555555554443
No 234
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=43.34 E-value=84 Score=28.45 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
-.++|.+.|-..+.. +...=+.+++.|+.|...|+++|
T Consensus 38 s~ReytE~La~~l~~---qd~~WK~kae~LE~EvLqlrQeL 75 (375)
T PF13971_consen 38 SSREYTEHLAKRLSE---QDESWKSKAEALEAEVLQLRQEL 75 (375)
T ss_pred CHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 358999999876654 55667888999999999999999
No 235
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.24 E-value=3.2e+02 Score=26.59 Aligned_cols=73 Identities=12% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy3460 42 KIRRKIKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLS 114 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s 114 (153)
+.+..+..|+.....- ++....+.+|+.+.+.+...-..|.++++.....-..|..+++.+-..+.......|
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS 631 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLS 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3445666666555443 444667888888888888888888888888888888888888877666655444333
No 236
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.13 E-value=1.6e+02 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..+++.|+.+......+++.|+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333
No 237
>KOG4643|consensus
Probab=43.06 E-value=90 Score=32.04 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLED--TNYSLVSQ 98 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~--eN~~L~~q 98 (153)
.+...++.||..+..|+.||..|..+|+.|.. +|..+..+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq 568 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQ 568 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556777788888888888888888887777 66555444
No 238
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.82 E-value=1.8e+02 Score=23.55 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=6.5
Q ss_pred hhhhcCCCCC
Q psy3460 18 TLQAEGYPIP 27 (153)
Q Consensus 18 ~l~~~g~~~p 27 (153)
.|+..||.+.
T Consensus 80 ~LE~~GFnV~ 89 (190)
T PF05266_consen 80 ELEEHGFNVK 89 (190)
T ss_pred HHHHcCCccH
Confidence 4566888773
No 239
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.76 E-value=93 Score=25.84 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
+.+|..++..+.++...++.+...
T Consensus 68 ~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 68 VDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 240
>PRK10963 hypothetical protein; Provisional
Probab=42.74 E-value=1.2e+02 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILK---SENCDYKKRISNLE 89 (153)
Q Consensus 65 ~~LE~~v~~L~---~eN~~L~~~~~~L~ 89 (153)
..||.++..|- .+|..+..+++.|.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~ 81 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQ 81 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444442 24555555555444
No 241
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.17 E-value=48 Score=29.95 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy3460 91 TNYSLVSQLNKL 102 (153)
Q Consensus 91 eN~~L~~ql~~L 102 (153)
||..|+.++..|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 242
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.13 E-value=1.3e+02 Score=25.93 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhccCCCcchhhHHHH
Q psy3460 48 KNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA----IIARHTAQLSNVSIVYSLV 123 (153)
Q Consensus 48 kNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~----~v~~~~~~~s~~~~~~~l~ 123 (153)
++.--++.-=+....-++++-.++..+..++.++...+..|+.+...|...+..-+. .+..+-...+..+|...++
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 333333333344445555555555555556666666666666555555444433332 2222221122234554444
Q ss_pred HhHHHHHHHHhh
Q psy3460 124 SQLNKLQAIIAR 135 (153)
Q Consensus 124 sq~~q~~~~~~~ 135 (153)
+ .--+.++|.|
T Consensus 125 ~-SkSfsD~IsR 135 (265)
T COG3883 125 N-SKSFSDLISR 135 (265)
T ss_pred c-cCcHHHHHHH
Confidence 2 3445555555
No 243
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=42.12 E-value=1e+02 Score=20.51 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..|-.+++.|+.+|..|+.-|.
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666655543
No 244
>KOG1318|consensus
Probab=42.08 E-value=60 Score=29.70 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
+++.+-+.|+..|+.|..++++|+.....
T Consensus 294 E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 294 ELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555554444433
No 245
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.08 E-value=1.5e+02 Score=22.23 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=3.8
Q ss_pred HHHhhHHHHH
Q psy3460 46 KIKNKISAQE 55 (153)
Q Consensus 46 ~lkNR~SAq~ 55 (153)
++++-..++.
T Consensus 51 l~~Ha~~~~~ 60 (132)
T PF07926_consen 51 LVKHAEDIKE 60 (132)
T ss_pred HHHhHHHHHH
Confidence 3333333333
No 246
>KOG0980|consensus
Probab=41.77 E-value=4e+02 Score=27.17 Aligned_cols=64 Identities=19% Similarity=0.088 Sum_probs=38.1
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 46 KIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 46 ~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..+--.+|+.+-....+-...|...+..+..+-..+..+.+........|++++..+...+...
T Consensus 450 i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~l 513 (980)
T KOG0980|consen 450 IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEEL 513 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777776666666777777776666666555555554444555555555555544443
No 247
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.73 E-value=1.4e+02 Score=21.93 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=9.0
Q ss_pred CHHHHhhhhhcCCCCCCC
Q psy3460 12 TEEEKRTLQAEGYPIPTR 29 (153)
Q Consensus 12 ~~ee~~~l~~~g~~~p~~ 29 (153)
|..--|--++.|+-.|.+
T Consensus 13 s~~tlRyYe~~GLl~p~r 30 (118)
T cd04776 13 TPRTLRFYEDKGLLSPER 30 (118)
T ss_pred CHHHHHHHHHCCCCCCcC
Confidence 344444445566555543
No 248
>KOG2264|consensus
Probab=41.66 E-value=92 Score=30.39 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..+.+||.+-+.|.++..++..++++|+.....-..+|..|+..|.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 45778888888888888888888888877766656666666655544
No 249
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.60 E-value=2.5e+02 Score=24.78 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
-=|.+|..|+..+...+.+++.|+.+...++.+|+..+......
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33556666777777788888888999999999998777655533
No 250
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=41.55 E-value=1.9e+02 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 85 ISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 85 ~~~L~~eN~~L~~ql~~L~~~ 105 (153)
+..|+.||..|+.-|...+..
T Consensus 72 i~~Lq~EN~eL~~~leEhq~a 92 (181)
T PF05769_consen 72 IRQLQQENRELRQSLEEHQSA 92 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776666655543
No 251
>KOG0818|consensus
Probab=41.53 E-value=48 Score=31.62 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+..+++|+..+..++.++++|.+-++.|..+|..|++.+...+
T Consensus 422 ~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r 464 (669)
T KOG0818|consen 422 KSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNR 464 (669)
T ss_pred hhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 6678999999999999999999999999999999988775433
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=88 Score=30.24 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 47 IKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 47 lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
..+++.+...+ +|=...+..|+..+..+..++..|+.++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 22234444444444444444444444433
No 253
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.74 E-value=3.7e+02 Score=26.59 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHhhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 13 EEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 13 ~ee~~~l~~~g~~~p~~~p~t~~eek~~Kr~rR~lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~e 91 (153)
.+|-.+|...|-........+..+-...+-.-..+|+++-....- .||+.-+..|-.++..+..++.+++..+.-|...
T Consensus 251 e~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkes 330 (775)
T PF10174_consen 251 EDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKES 330 (775)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456667666663332221111112233444556677776655555 4555455555555555555555555555444433
No 254
>PHA03162 hypothetical protein; Provisional
Probab=40.61 E-value=43 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+|..++..|+-||..|+.++.
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778889999998874
No 255
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=40.39 E-value=12 Score=28.69 Aligned_cols=26 Identities=35% Similarity=0.733 Sum_probs=22.0
Q ss_pred CCCCcccccCHHHHhhhhhcC---CCCCC
Q psy3460 3 KGSTGVLHLTEEEKRTLQAEG---YPIPT 28 (153)
Q Consensus 3 ~~~~~~~~l~~ee~~~l~~~g---~~~p~ 28 (153)
+|-.|+++|++|-+..+..-| +.+|+
T Consensus 69 TG~~G~l~l~~ea~e~~r~k~~~vi~~pT 97 (121)
T COG1504 69 TGQSGMLELSEEAREFFRKKGCEVIELPT 97 (121)
T ss_pred cCceeEEEeCHHHHHHHHhcCCeEEEeCC
Confidence 688899999999999999988 45555
No 256
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=40.38 E-value=90 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchh
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSI 118 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~ 118 (153)
..+|..|..++..|.+.....++++..|++.+.....+.+..+.
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 50 (512)
T TIGR03689 7 QATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGT 50 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE
Confidence 33444444444444445555555555555555555544443333
No 257
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=39.94 E-value=55 Score=27.02 Aligned_cols=66 Identities=18% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 42 KIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
..+..+..=-...+....|-+|+..|+..++-+..-...+.. .|-..+..|..+|.+|+-+++...
T Consensus 146 ~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~---NLvtr~g~l~~El~rmR~LlarV~ 211 (213)
T PF13093_consen 146 ELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQP---NLVTRDGELEAELERMRMLLARVA 211 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccc---ccCCCCchHHHHHHHHHHHHHHHc
Confidence 333333333333334444555565655555444333331111 122445666666666666665543
No 258
>KOG0250|consensus
Probab=39.91 E-value=3.3e+02 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSEN-CDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN-~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
..+..|+..+..+..+- +.+..++.+.+++...|..++..
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33344444444443332 33333333333333333333333
No 259
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=39.91 E-value=1.3e+02 Score=28.59 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
+.=+.+||.++..+=.+.+.|+...+.+....+.+..+|......
T Consensus 362 nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 362 NSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999998887777777776666666666666666655543
No 260
>KOG4571|consensus
Probab=39.75 E-value=1.6e+02 Score=25.84 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|=+.=-.+-+.++.|...|..+.++|+.+...|-.++..|+.+|...
T Consensus 242 YRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 242 YRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555555555555555555555555555555443
No 261
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=39.62 E-value=3.3e+02 Score=26.74 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q psy3460 83 KRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNV 116 (153)
Q Consensus 83 ~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~ 116 (153)
..+...+.+...+..+|..|..+|+.+.+.+.+.
T Consensus 440 ~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnR 473 (717)
T PF09730_consen 440 GSLNSAQDELVTFSEELAQLYHHVCMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 3344445556666777888888888777655444
No 262
>PHA03155 hypothetical protein; Provisional
Probab=39.45 E-value=43 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+|..++..|+-||..|+.+|.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777789999998875
No 263
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=39.42 E-value=1.5e+02 Score=21.49 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhh
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIV 119 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~ 119 (153)
++..|.++.+.|..++..+..+...++.....-+..........++..||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~ 74 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYF 74 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45555555566666666666666666665554444333333333333343
No 264
>KOG3650|consensus
Probab=39.29 E-value=1.2e+02 Score=22.93 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.|......|..++....+||-.|+++.+-|-..|..
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeN 102 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 344444555566666666666666665555554443
No 265
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.21 E-value=99 Score=22.41 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
+.+|..++.|+..-..|..++..++...+.+
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666555444
No 266
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.13 E-value=2.4e+02 Score=23.85 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=41.3
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
--.|-.++-|..+|.--.+|.+|+...-..-..+..+...|..+++.. +..++.++...+
T Consensus 149 ~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 149 ETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345567788889998888888888886554456666666666666554 555666665544
No 267
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.12 E-value=93 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql 99 (153)
+..++.....+...|+.++
T Consensus 59 ~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 59 YKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444433
No 268
>KOG2656|consensus
Probab=39.00 E-value=1.7e+02 Score=27.05 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHH
Q psy3460 56 SRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQ 130 (153)
Q Consensus 56 SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~ 130 (153)
.|.| |+|++.|=.+--.-..|-+.|-..+..++.........-+.|..++....++..+.+..+++.++.+.+.
T Consensus 206 Er~R-Kk~L~~L~sRt~~qvaEEe~Ll~E~KkiEarkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~ 279 (445)
T KOG2656|consen 206 ERER-KKYLERLLSRTPEQVAEEEALLVELKKIEARKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALL 279 (445)
T ss_pred HHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHh
Confidence 3444 4567666655444444445555555556655555555555666777766666555566677766555554
No 269
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=38.82 E-value=1.5e+02 Score=27.00 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=33.8
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILK--SENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~--~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+-+..+++.|+..-....++ ++..+..++ ....++..+++.+..+...|+..+..|+..+...
T Consensus 162 ~vQ~~L~~~Rl~~L~~qi~~------~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 162 RVQIELIQERLDELEEQIEK------HEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665543333222 222222222 1334456677777777777777777777666554
No 270
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=38.73 E-value=3.3e+02 Score=25.36 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh---hccC---
Q psy3460 46 KIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLV-------SQLNKLQAIIAR---HTAQ--- 112 (153)
Q Consensus 46 ~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~-------~ql~~L~~~v~~---~~~~--- 112 (153)
.-+|..+|+.--.|-.+.-.+|..++..|-.+-..|..+...|.++-..|. .+...|...-+. ....
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~ 207 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777887777777666677777777777777777666666665555444 222222221111 1000
Q ss_pred -----CCcchhhHHHHHhHHHHHHHHhhcccccccc
Q psy3460 113 -----LSNVSIVYSLVSQLNKLQAIIARHTAQLSNN 143 (153)
Q Consensus 113 -----~s~~~~~~~l~sq~~q~~~~~~~~~~~~~~~ 143 (153)
.+----+-..-.+.+++.+-|..-.++|||-
T Consensus 208 r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~ 243 (499)
T COG4372 208 RANAAQARTEELARRAAAAQQTAQAIQQRDAQISQK 243 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001123444566778888888888888874
No 271
>PRK14140 heat shock protein GrpE; Provisional
Probab=38.71 E-value=1.4e+02 Score=24.30 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.+.+|+.++..+..+...++.+..
T Consensus 52 ei~elkd~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 52 KLDELEERYLRLQADFENYKRRIQ 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444
No 272
>PRK14162 heat shock protein GrpE; Provisional
Probab=38.55 E-value=1.3e+02 Score=24.55 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+.+.+|..++..+..+...++.+..
T Consensus 53 ~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 53 AKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544
No 273
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.54 E-value=1.6e+02 Score=21.67 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
|...+..|..++..+..++..|+..+......+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544444
No 274
>KOG1962|consensus
Probab=38.53 E-value=1e+02 Score=25.86 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+..|+.+.+.+..|-..|..+-..|++.+.
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444443
No 275
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.50 E-value=1.5e+02 Score=26.33 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.|..+...|..+...+..+++.+
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445554444443
No 276
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.50 E-value=1.6e+02 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
..|...+..+..+...+.+.+..
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 111 EKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444433
No 277
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=38.49 E-value=1.9e+02 Score=24.32 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 46 KIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 46 ~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+..-|.+|+..-+|+++-+..|-.-+...-.|-.+.+.+++.|..++..|.++
T Consensus 17 LE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~ 69 (214)
T PF07795_consen 17 LEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQ 69 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 55678899999999999999999999999999999999998888776655543
No 278
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.21 E-value=2.9e+02 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
-.+.|+.++..|..++..|...|..
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566899999999999999988864
No 279
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=37.88 E-value=11 Score=27.95 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.+|+...-.+..+...|...+..|+.+...|++++..|......
T Consensus 2 ~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 2 QELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -----------------------------------------HT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666666666666666666666666666666554433
No 280
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=37.61 E-value=2.7e+02 Score=24.10 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
|..|+++.+.++.-+.++-.-..+..||.++..++.++.....++..+..
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 34444555555544444333345666777776666666666655554443
No 281
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.57 E-value=1.3e+02 Score=20.28 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+..+|.++..++.....|......++.+-..+..++..+.
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333333334444444333
No 282
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=37.44 E-value=95 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCD 80 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~ 80 (153)
+.++.|+.++..|..+...
T Consensus 112 ~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444433
No 283
>PRK01203 prefoldin subunit alpha; Provisional
Probab=37.31 E-value=1.5e+02 Score=22.93 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.+++.++..++++...|..+++.|+.....+..-+..|..
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677788888888888888888777777777666666655
No 284
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.07 E-value=3e+02 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~e 91 (153)
.++.||.++..+..+-..+..++..++.+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~e 238 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNE 238 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333
No 285
>PRK14158 heat shock protein GrpE; Provisional
Probab=36.97 E-value=1.4e+02 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
++.+.+|..++..+..+...++.+...
T Consensus 53 e~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 53 EAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666665553
No 286
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.91 E-value=79 Score=28.26 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
|.++.+.|.+|..+++-.++||..|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiL 26 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKIL 26 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888776
No 287
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=36.80 E-value=2.5e+02 Score=23.38 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
..++..+......|..++..|...|..|..++..+..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 3333333334444444444444444444444444433
No 288
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.78 E-value=2.3e+02 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
++|++|+.+-......++.+..+|+.++...+
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777666666555555555555554433
No 289
>PRK11239 hypothetical protein; Provisional
Probab=36.73 E-value=69 Score=26.93 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
|..++..|+.+...|+.++..|..
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555544443
No 290
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=36.56 E-value=2.6e+02 Score=23.47 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~ 85 (153)
..|+.||+.||.+++.|......|-.+-
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r 52 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHR 52 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999987766555554433
No 291
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.31 E-value=1.5e+02 Score=21.24 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
+.++..+..++..-..+..++..++.+.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 292
>KOG1691|consensus
Probab=36.20 E-value=2e+02 Score=24.07 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHH-HHhHHHHHHHHhh
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSL-VSQLNKLQAIIAR 135 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l-~sq~~q~~~~~~~ 135 (153)
||+-++-+|.++..|+.--..+...+..|+..-..++.-.+.-.+.++-.+- .|- ..+.++ ..|..-|-.++.+
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi-~Sl-~v~~~va~~QvlyLK~fF~k 206 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSI-LSL-VVLLSVAGWQVLYLKRFFQK 206 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888777655555554444444333333333333344443331 111 112222 3566666666655
No 293
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.17 E-value=1.4e+02 Score=20.46 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|-+.|..|-.+-+.|......+...|..|...+..+-.++..+...+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444444444333
No 294
>PRK06798 fliD flagellar capping protein; Validated
Probab=36.15 E-value=2.3e+02 Score=25.74 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHHh
Q psy3460 122 LVSQLNKLQAIIA 134 (153)
Q Consensus 122 l~sq~~q~~~~~~ 134 (153)
|.+|...|.+|+.
T Consensus 423 lnsQ~s~l~~~~~ 435 (440)
T PRK06798 423 LDSQLKTIKAMTK 435 (440)
T ss_pred HHHHHHHHHHHhc
Confidence 4444444544443
No 295
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.96 E-value=2.3e+02 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~ 100 (153)
+..+++.|+.++..|..++.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 296
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.90 E-value=1.3e+02 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
.+.+||.++..|..+..+|+. ++.++.+|.....+++.....+.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~ 100 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLD 100 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhh
Confidence 367888888888888888887 77777777555555544433333
No 297
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=35.80 E-value=76 Score=23.12 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHH
Q psy3460 69 RKVEILKSENCDY 81 (153)
Q Consensus 69 ~~v~~L~~eN~~L 81 (153)
.++..+..+...+
T Consensus 6 ~~~~~l~~~~~~~ 18 (144)
T PF04350_consen 6 AQIQQLQQELAQL 18 (144)
T ss_dssp ------HHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3333344433333
No 298
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=35.58 E-value=44 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
..|..|..++..|+.+...|.++...|+.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp ----------------HHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444
No 299
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.45 E-value=1.6e+02 Score=22.48 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.+..|=.++..|.....+|-+....|+-||..|+..|..
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 344445555555555555555556666688888888876
No 300
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=35.44 E-value=3.2e+02 Score=24.21 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+.++..+...=..+.+++..|+.+|.-|++||...+..+.
T Consensus 206 ~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 206 QDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677899999999999999999987665543
No 301
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.05 E-value=2.2e+02 Score=23.64 Aligned_cols=11 Identities=0% Similarity=0.217 Sum_probs=5.4
Q ss_pred HHHHHHHhhcc
Q psy3460 127 NKLQAIIARHT 137 (153)
Q Consensus 127 ~q~~~~~~~~~ 137 (153)
.++..++..+-
T Consensus 146 kql~~vL~k~G 156 (211)
T PRK14160 146 KQFKTSLEKLG 156 (211)
T ss_pred HHHHHHHHHCC
Confidence 44555555543
No 302
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=34.96 E-value=74 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 85 ISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 85 ~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+++|..||..|+.++++|.+.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777775544433
No 303
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.88 E-value=1.8e+02 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-++|+..|+..+..+...+..|-.+...|...-..|-..+.
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~ 59 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQ 59 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998888888777666665555544443
No 304
>KOG4797|consensus
Probab=34.86 E-value=89 Score=23.92 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.|..-|+.+|..|++.|..|.++..-|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544333
No 305
>KOG4673|consensus
Probab=34.86 E-value=2.9e+02 Score=27.62 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHhhcccc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDT--NYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIARHTAQ 139 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~e--N~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~~~~~~ 139 (153)
++|..||.+|..+..|-..|+.++..|..+ +.-++..|..-...|++.. .----|.++..+...+|..-+|.
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm------~EGEkLSK~ql~qs~iIkKLRAk 482 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLM------AEGEKLSKKQLAQSAIIKKLRAK 482 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred c
Q psy3460 140 L 140 (153)
Q Consensus 140 ~ 140 (153)
|
T Consensus 483 ~ 483 (961)
T KOG4673|consen 483 I 483 (961)
T ss_pred h
No 306
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=34.83 E-value=1.2e+02 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+.+|..++..|...|..|.+-+.....+...|+.+|..|..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678888899999999999999999999999999988874
No 307
>KOG0982|consensus
Probab=34.82 E-value=3.9e+02 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+..|..+++.|+.+|..|+..+..|++++....
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777788888777777777666543
No 308
>PRK02119 hypothetical protein; Provisional
Probab=34.78 E-value=1.5e+02 Score=20.35 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+..+|.-+..|-.........+..|+.+...|.+++..+.
T Consensus 18 la~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 18 IAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555544444455555555555555555554443
No 309
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=34.73 E-value=2.6e+02 Score=23.83 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 61 KEYMDALERKVEILKSENCD-----YKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~-----L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
-.+++.++.++..++.+.-. ...++..|+...-.++.-+..++..+....
T Consensus 153 ~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~ 207 (322)
T COG0598 153 FPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLA 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566777777776653333 556677777777777777776666555543
No 310
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=34.73 E-value=1.6e+02 Score=20.53 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
++.++.+...|..||..|+-++..|
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666665544433
No 311
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=34.44 E-value=2.2e+02 Score=22.39 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
++.|+.|...+..+|+.=....+.|..|...++.+|..
T Consensus 3 ~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~R 40 (142)
T PF08781_consen 3 CEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQR 40 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666556665543
No 312
>PHA00728 hypothetical protein
Probab=34.25 E-value=55 Score=25.60 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~ 90 (153)
.++.|..||.+|+.++..|+.
T Consensus 6 eveql~keneelkkkla~lea 26 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEA 26 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 355677777777776666653
No 313
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.17 E-value=39 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-+.|..+++.|+..+..|..|. .+++.+.
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3457778888888888888888 6665553
No 314
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.16 E-value=1.2e+02 Score=21.28 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy3460 91 TNYSLVSQL 99 (153)
Q Consensus 91 eN~~L~~ql 99 (153)
+...+..++
T Consensus 92 ~~~~~~~~~ 100 (104)
T PF13600_consen 92 EIQALEAQI 100 (104)
T ss_pred HHHHHHHHH
Confidence 333333333
No 315
>PRK04406 hypothetical protein; Provisional
Probab=34.02 E-value=1.6e+02 Score=20.40 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.||.++..|+.....+..-|+.|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 316
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.71 E-value=1.1e+02 Score=20.67 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCD----YKKRISNLEDTNYSLV 96 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~----L~~~~~~L~~eN~~L~ 96 (153)
.+..+|..+..|..+-.. |-..|+.|+.+|..|.
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456667777777666554 3333444444444443
No 317
>PRK14127 cell division protein GpsB; Provisional
Probab=33.65 E-value=2e+02 Score=21.48 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
-..-..|...+..|+.+|..|+.++..++..+...
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33456677788888888888888888888877654
No 318
>PRK14160 heat shock protein GrpE; Provisional
Probab=33.48 E-value=1.7e+02 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
..|+.++..|+.+...|+.++..+.++...++.
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 319
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.43 E-value=93 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYK 82 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~ 82 (153)
++|+.++..|+.|...++
T Consensus 24 ~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 24 EELEERIALLEAEIARLE 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 320
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.36 E-value=1.7e+02 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
++.+.+|..++..+..+...++.+..
T Consensus 53 ~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 53 EDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554443
No 321
>KOG0161|consensus
Probab=33.33 E-value=4.8e+02 Score=28.76 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=56.1
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 48 KNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 48 kNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
.-..+|+++++-=.+.+...|.++..+.+++.+|+..+..+......+-.++..+...+....+
T Consensus 1646 ~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1646 RELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 4778888888888899999999999999999999999999999999998888888888877543
No 322
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.31 E-value=2.8e+02 Score=22.93 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDY 81 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L 81 (153)
++..||..+..-+.+|.+|
T Consensus 176 ~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 176 KVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 323
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.19 E-value=2.3e+02 Score=22.46 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
-++|+..|+..+..+..-+..|-.+...|...-..+-.++..|..
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~ 53 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGS 53 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468889999999888888888888777777776666666555443
No 324
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.07 E-value=2.4e+02 Score=22.02 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKS 76 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~ 76 (153)
+.++..||..+.....
T Consensus 23 e~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 23 EDHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555544433
No 325
>PLN02320 seryl-tRNA synthetase
Probab=32.98 E-value=1.3e+02 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
.|..+-..|+.++..|+.+...+..++..+-..+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444445556666666666666655555444333
No 326
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.75 E-value=1.7e+02 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
++.+.+|..++..+..+...++++...
T Consensus 80 ~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 80 KQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666665543
No 327
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.71 E-value=1.6e+02 Score=19.85 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+..+|.-+..|.........++..|+.+...|..++..+.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555655555566666666666666666666554
No 328
>PHA00728 hypothetical protein
Probab=32.44 E-value=66 Score=25.16 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 83 KRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 83 ~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
..+++|+.||..|+..|.+|.+++....
T Consensus 5 teveql~keneelkkkla~leal~nn~~ 32 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNNES 32 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcCCC
Confidence 3567788899999999999999887644
No 329
>KOG0963|consensus
Probab=32.05 E-value=3.6e+02 Score=26.17 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 87 NLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 87 ~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.|..++..+..++..+..-|...
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665555544
No 330
>KOG1055|consensus
Probab=31.96 E-value=18 Score=35.76 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=47.5
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEY----MDALER-KVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKey----l~~LE~-~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.+.+..++|=..+..++..+.-- +.+.+. +...+..||.+|+.++.+.++....++++|..
T Consensus 726 pKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~ 791 (865)
T KOG1055|consen 726 PKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQP 791 (865)
T ss_pred hhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccc
Confidence 46677778877777777655444 555554 78889999999999999999999999998863
No 331
>PRK14151 heat shock protein GrpE; Provisional
Probab=31.79 E-value=1.6e+02 Score=23.65 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=7.1
Q ss_pred HHHHHHHhhcccc
Q psy3460 127 NKLQAIIARHTAQ 139 (153)
Q Consensus 127 ~q~~~~~~~~~~~ 139 (153)
.++..++..+-..
T Consensus 109 k~l~~~L~k~Gv~ 121 (176)
T PRK14151 109 KMFQDTLKRYQLE 121 (176)
T ss_pred HHHHHHHHHCCCE
Confidence 4555666664443
No 332
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=31.59 E-value=2.7e+02 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q psy3460 64 MDALERKVEILKS----ENCDYKKRISNLEDTN---YSLVSQLNKLQAIIAR 108 (153)
Q Consensus 64 l~~LE~~v~~L~~----eN~~L~~~~~~L~~eN---~~L~~ql~~L~~~v~~ 108 (153)
++.++.++..+.. +...|..++..|...+ ..|..+...|...+..
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~ 66 (304)
T PF02646_consen 15 LEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKN 66 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 3444444444333 3445778888888888 8888888888888773
No 333
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.57 E-value=1.9e+02 Score=20.44 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
...+..|..++..+..+|..|+.++.
T Consensus 74 ~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 74 MEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788888888888888887653
No 334
>PRK14139 heat shock protein GrpE; Provisional
Probab=31.56 E-value=1.9e+02 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+.+|..++..+..+...++.+..
T Consensus 48 ~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 48 AAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544444
No 335
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=31.54 E-value=1.4e+02 Score=22.44 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLED 90 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~ 90 (153)
...|+.||+-|+-+++-|-.
T Consensus 81 ~~~LeEENNlLklKievLLD 100 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887765543
No 336
>KOG0837|consensus
Probab=31.08 E-value=3.6e+02 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
++.|+..-..|+.+...|..+...|+.++.++...|..+.+
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555666666666666655543
No 337
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=30.73 E-value=32 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.7
Q ss_pred ccCHHHHhhhhhcCCCCCCC
Q psy3460 10 HLTEEEKRTLQAEGYPIPTR 29 (153)
Q Consensus 10 ~l~~ee~~~l~~~g~~~p~~ 29 (153)
.||+.|+.+|..||||--.+
T Consensus 86 ~Ls~~Q~~~L~rWGYPYV~d 105 (160)
T PF06299_consen 86 GLSPRQRANLERWGYPYVMD 105 (160)
T ss_pred cCCHHHHHHHHHhCCCceeC
Confidence 48999999999999997666
No 338
>KOG4378|consensus
Probab=30.73 E-value=67 Score=30.70 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
.||+-|..+++-|++||+.|++
T Consensus 650 ~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhc
Confidence 5677777777777777777765
No 339
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=30.46 E-value=1.6e+02 Score=25.19 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 63 YMDALERKVEI---LKSENCDYKKRISN---LEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 63 yl~~LE~~v~~---L~~eN~~L~~~~~~---L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
++..+...+.. +..+|+.|+.++.. +..+...|+++...|+.++.-..
T Consensus 57 ~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 57 FVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44444444333 45578888877764 45667888888888888776543
No 340
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.30 E-value=1.8e+02 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
..+..+-..|+.++..|+.+...+..++..+-..
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666666666655544433
No 341
>KOG1656|consensus
Probab=30.25 E-value=2.4e+02 Score=23.75 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHH
Q psy3460 46 KIKNKISAQESRRKKKEYMDALE 68 (153)
Q Consensus 46 ~lkNR~SAq~SR~RKKeyl~~LE 68 (153)
.-+|+.+|-.|=+|||.|=.+|.
T Consensus 56 ~tkNKR~AlqaLkrKK~~E~qL~ 78 (221)
T KOG1656|consen 56 GTKNKRMALQALKRKKRYEKQLA 78 (221)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999865554
No 342
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.19 E-value=2.9e+02 Score=22.39 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.++.||+.||.+++.+...-..|-.+-..|
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~r~el 45 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNHRKEL 45 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988877666654444333
No 343
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=29.96 E-value=1.6e+02 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
++++.+++.|+.+..+|..+++.
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 344
>KOG0946|consensus
Probab=29.74 E-value=5.1e+02 Score=26.31 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
-++.|-...+.|+.+|.+|.+++.....+...|+.++.-|+..+.
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455556666666666666666666666666666666666555
No 345
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.70 E-value=2.1e+02 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
...+..+|..+.....+...+...+..|+.+-..|...|..-+.
T Consensus 27 d~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~ 70 (508)
T PF04129_consen 27 DSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKA 70 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566777777777777777777777777776666666554333
No 346
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=2.8e+02 Score=21.74 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
++|+.....+.....+|..++..+..+++.+-+
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544443
No 347
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.40 E-value=4.7e+02 Score=24.35 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 45 RKIKNKISAQESRRK-KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 45 R~lkNR~SAq~SR~R-KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
-++-|....+...-| -..|++.|-..+......-..+......+......++.++..+...+
T Consensus 414 ~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 414 SQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred HHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344555555555533 36677777777666666666666666666666666666655554433
No 348
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=29.33 E-value=2.8e+02 Score=21.79 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
.+.|++.||.++..+..-...|-.+...|-
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~ 58 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRRQELA 58 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999988887766666655444333
No 349
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=2.5e+02 Score=22.04 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.-+++|..++..+..+...|..++..|......+..-+..|..+-..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~ 52 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA 52 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666676677777777776666666666666666555554443
No 350
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.02 E-value=3.1e+02 Score=22.18 Aligned_cols=27 Identities=7% Similarity=0.088 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKR 84 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~ 84 (153)
..++.|+.+|+..++.+..--..|-..
T Consensus 7 ~~~k~yl~~l~~~lk~~~~~~~~lv~~ 33 (198)
T cd07630 7 QKERDMNTKLSANMKEAAEKFLKIVNT 33 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999998876655555443
No 351
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.92 E-value=2e+02 Score=20.44 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSL 95 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L 95 (153)
..|...+..+..+...+
T Consensus 94 ~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 94 EKLEKELAELQAQIEQL 110 (120)
T ss_dssp HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 352
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=28.91 E-value=2.7e+02 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.337 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..|...+..++..-..+..++..|+.|...|..+-..|+..|.
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666777777777777777766666666553
No 353
>PF15556 Zwint: ZW10 interactor
Probab=28.86 E-value=3.7e+02 Score=22.91 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 47 IKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 47 lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.|-+++.-+.|--.|.+.-.-|..+..|..-..+++++...-..+...|.++|..|+.....-.
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677677766666766677777777777777777777777777777777776666555433
No 354
>PRK14157 heat shock protein GrpE; Provisional
Probab=28.79 E-value=1.7e+02 Score=24.63 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcccc
Q psy3460 126 LNKLQAIIARHTAQ 139 (153)
Q Consensus 126 ~~q~~~~~~~~~~~ 139 (153)
..++..++..+-..
T Consensus 157 ~k~l~~vL~k~GVe 170 (227)
T PRK14157 157 AAKIDKAFEKFGVE 170 (227)
T ss_pred HHHHHHHHHHCCCE
Confidence 35666666665433
No 355
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.69 E-value=2.4e+02 Score=21.48 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 69 RKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 69 ~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.++..|..||.....++...-.+...|...+.
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 135 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444444443
No 356
>KOG0979|consensus
Probab=28.52 E-value=6.8e+02 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=60.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHhh
Q psy3460 57 RRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIAR 135 (153)
Q Consensus 57 R~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~~ 135 (153)
+..+-+-+.+.+.++..+...|..|+.+-...++.....+..+..++..+....+...+..-+....++..+...-..+
T Consensus 306 ~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~ 384 (1072)
T KOG0979|consen 306 VQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLR 384 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhh
Confidence 3445667788888899999999999988888888888888888888888887766555555566677777776666655
No 357
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=28.29 E-value=2.1e+02 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|...|..+..|+.+|..++...+.+...++..-.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~ 34 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQ 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888877777666665543
No 358
>KOG0249|consensus
Probab=27.89 E-value=3.1e+02 Score=27.45 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 85 ISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 85 ~~~L~~eN~~L~~ql~~L~~ 104 (153)
-+.|.+.+..|++++..|..
T Consensus 239 k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 239 KDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 33455667777777777774
No 359
>KOG4643|consensus
Probab=27.88 E-value=6e+02 Score=26.46 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 42 KIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..+-.+.||.=-..--+++-.-++.+-.+.-.|+.++..|..+++.|++....+.+++.++.
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566554444444444444555555555555555555555555555555544444443
No 360
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.87 E-value=2e+02 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
||..+..|...+..+..+++..+.+|..|..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444454444444444444444
No 361
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.85 E-value=6.9e+02 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
.+||.++..|..++..+...+..+..+.
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444443333
No 362
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.75 E-value=5.2e+02 Score=24.98 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-..|+.+|+.|..++..|...|+.++.++..-.....
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~ 117 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASRE 117 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999998888888777654444333
No 363
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.64 E-value=3.4e+02 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
+.|...||..+..++.+...++.+++.+
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888877777777654
No 364
>KOG0612|consensus
Probab=27.62 E-value=6.6e+02 Score=26.60 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
...+.+...+.+...|+.++.+|+..++.++..|..+...+.+
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566677777778888888888887777777766544443
No 365
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.34 E-value=2.5e+02 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+.+|..++..+..+...++.+..
T Consensus 35 ~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 35 IEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 366
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.11 E-value=2.7e+02 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..+...+..|.=.|..|-.++..|+.-+.
T Consensus 43 Rk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 43 RKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444443
No 367
>PRK11239 hypothetical protein; Provisional
Probab=26.94 E-value=1.2e+02 Score=25.51 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
..||.+|..|+.+...|+.++..|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777777776666554
No 368
>PRK04325 hypothetical protein; Provisional
Probab=26.80 E-value=2.2e+02 Score=19.60 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
+..+|.-+..|-........++..|+.+...|..++..+
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555554444444555555555555555555443
No 369
>PLN02678 seryl-tRNA synthetase
Probab=26.74 E-value=2.2e+02 Score=26.15 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
..+..+-..|+.++..|+.+...+.+++..+-..+
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444556667777777777777777666544444
No 370
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.69 E-value=1.9e+02 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..|+.+...|+++...|+.++..|..++...+.++...
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666665554
No 371
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.06 E-value=1.6e+02 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 86 SNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 86 ~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|-+.+..|.++++.|...+.
T Consensus 45 ~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444
No 372
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.70 E-value=4.5e+02 Score=22.89 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q psy3460 33 TKTEEKSLKKIRRKIKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLED-----------TNYSLVSQLN 100 (153)
Q Consensus 33 t~~eek~~Kr~rR~lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~-----------eN~~L~~ql~ 100 (153)
.+++-+..|..=.....-+.+.+.. .-++..+..++..++..+.+-.++..++..++. |...|+..+.
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccCCCcchhhHHH
Q psy3460 101 KLQAIIARHTAQLSNVSIVYSL 122 (153)
Q Consensus 101 ~L~~~v~~~~~~~s~~~~~~~l 122 (153)
.|+..-.=.-...++..+.+.+
T Consensus 282 ~Le~l~g~~~~~~~~~~l~~~~ 303 (312)
T smart00787 282 LLQSLTGWKITKLSGNTLSMTY 303 (312)
T ss_pred HHHHHhCCeeEeccCCeEEEEe
No 373
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=25.60 E-value=1.2e+02 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
-+|-.+++.|+.++..|+.+|..
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777776643
No 374
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=25.60 E-value=3.6e+02 Score=21.82 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
..++..+..+|..|...++.|..++.........|-..+
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444444
No 375
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=25.53 E-value=3.2e+02 Score=21.21 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.++..+|..+..+..|-..|..+-...++....|++-|..
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888888776643
No 376
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.51 E-value=3.3e+02 Score=26.93 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
...+.+...|..+++.++.+|..|+-++.-+
T Consensus 130 ~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 130 SQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445556666666666666555433
No 377
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.46 E-value=2.9e+02 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
++.+.+|..++..+.++...++.+..
T Consensus 58 e~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 58 EVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554
No 378
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.44 E-value=2.3e+02 Score=19.54 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.+..-+.|......-..+|..|..++..|...|...
T Consensus 26 Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 26 WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666667777777766666555443
No 379
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.42 E-value=2.1e+02 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.+.+|..++..+..+...++++.+
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444
No 380
>PRK09039 hypothetical protein; Validated
Probab=25.41 E-value=4.6e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
+..||..+...+.+..+...++..|+.+....
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555666666665554444
No 381
>PF15294 Leu_zip: Leucine zipper
Probab=25.36 E-value=83 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|...+..|.+||..|+.++..+....+.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l 159 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSAL 159 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999988888777654
No 382
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.23 E-value=1e+02 Score=17.16 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEI 73 (153)
Q Consensus 59 RKKeyl~~LE~~v~~ 73 (153)
|.+..|.+||.++..
T Consensus 5 rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 5 RLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666543
No 383
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.19 E-value=28 Score=25.34 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
..|..++..|..++..|..++..+......|...|
T Consensus 35 ~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 35 ERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 44444444455555555444444444444444443
No 384
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.19 E-value=2.9e+02 Score=20.49 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
...+++.|-..+..|..+...|..++..|......+..-+..|..+
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l 49 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEEL 49 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777776666666655555555444433
No 385
>PHA02109 hypothetical protein
Probab=25.08 E-value=2.7e+02 Score=23.20 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
+..+|..+++.|..|...++..+..+++.|..
T Consensus 194 ~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~ 225 (233)
T PHA02109 194 QISELTIKLEALSDEACQVKHKILNLRAEVKR 225 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666654
No 386
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.05 E-value=3.6e+02 Score=21.62 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.++.||+.||..+..+...-..|-.+-..|..-...+-..+..|
T Consensus 8 ~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L 51 (216)
T cd07627 8 EKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEAL 51 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988877777766666665555555544443
No 387
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.94 E-value=2.4e+02 Score=22.48 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=7.0
Q ss_pred HHHHHHHhhcccc
Q psy3460 127 NKLQAIIARHTAQ 139 (153)
Q Consensus 127 ~q~~~~~~~~~~~ 139 (153)
.++..+++.+-..
T Consensus 104 k~l~~~L~~~Gv~ 116 (172)
T PRK14147 104 KQLLKVAADNGLT 116 (172)
T ss_pred HHHHHHHHHCCCE
Confidence 5555666654433
No 388
>PRK14163 heat shock protein GrpE; Provisional
Probab=24.89 E-value=2.7e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.+.+|..++..+..+...++++..
T Consensus 55 e~~el~d~~lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 55 ALGERTADLQRLQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 389
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.84 E-value=4.6e+02 Score=22.70 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|+.+-.+++.+++.|+.+|..|...+.
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544433
No 390
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=4.6e+02 Score=22.68 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 44 RRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 44 rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..+..-=...+...+-.++.+..++.+++.|..+...|+..|. ..+..|..++..|+
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAmq 111 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---ERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344444445555666777777777777777777777766553 45566666665544
No 391
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=24.74 E-value=3.7e+02 Score=23.84 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy3460 67 LERKVEIL 74 (153)
Q Consensus 67 LE~~v~~L 74 (153)
|+.....+
T Consensus 156 L~~e~~~~ 163 (342)
T PF06632_consen 156 LESEANKL 163 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 392
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.64 E-value=2e+02 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
++.|+.+.+.+..+...++.++..++.+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 393
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.58 E-value=2.1e+02 Score=25.46 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~e 91 (153)
..|..||.+|+.++..|+.+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~ 79 (337)
T PRK14872 60 LVLETENFLLKERIALLEER 79 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444333
No 394
>PF15058 Speriolin_N: Speriolin N terminus
Probab=24.52 E-value=1.1e+02 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
-|+.+++.|..||..||.++.=|
T Consensus 9 GlrhqierLv~ENeeLKKlVrLi 31 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLI 31 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 46777888888888887765433
No 395
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=1.1e+02 Score=25.45 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=36.3
Q ss_pred HHHHHhhHH-------HHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 44 RRKIKNKIS-------AQESRRKKKEYMDALERKVEILKS-----------ENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 44 rR~lkNR~S-------Aq~SR~RKKeyl~~LE~~v~~L~~-----------eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
=..+.||.. |+..=+|--.|+-=+-..|...-. --.+|..++.+|+.+...|++.|..+
T Consensus 135 Le~La~R~~gplvv~l~RepGkREsRymhLf~g~vd~aa~a~~~~~~a~a~~s~dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 135 LERLANREDGPLVVRLAREPGKRESRYMHLFSGEVDDAAVAQPAETDAPAAASSDLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred HHHHhcCCCCceeeecCCCCCcchhhhhhhhcchhhhhhhcCcccccCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667764 444446777788766666655111 12347777777887777777777654
No 396
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.08 E-value=3e+02 Score=24.80 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+.+..+...|+.++..|+.+...+..++..+-..+
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555666677777777777777777666544443
No 397
>PRK00295 hypothetical protein; Provisional
Probab=23.73 E-value=2.4e+02 Score=19.05 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..+|.-+..|-........++..|+.+...|..++..+.
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666666777777777777777776655
No 398
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.60 E-value=8.1e+02 Score=25.12 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=41.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 52 SAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 52 SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.|+.....-..-+..++.....+..........+..++.+...++.++..|+..+....
T Consensus 480 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~ 538 (1201)
T PF12128_consen 480 QAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQK 538 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 34444455566677777777777777777777777777888888888888887776443
No 399
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.41 E-value=2.3e+02 Score=23.45 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=6.7
Q ss_pred HHHHHHHhhccc
Q psy3460 127 NKLQAIIARHTA 138 (153)
Q Consensus 127 ~q~~~~~~~~~~ 138 (153)
.+|..+++.+-.
T Consensus 125 k~l~~vLek~GV 136 (209)
T PRK14141 125 RAMLNALERHGV 136 (209)
T ss_pred HHHHHHHHHCCC
Confidence 456666666443
No 400
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.21 E-value=4.9e+02 Score=22.49 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..++..+..++.++..|..+-.....+...|+.+.......|..-..++.+
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 455666777777777777666666666666666655555555544444444
No 401
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=23.17 E-value=97 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYS 94 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~ 94 (153)
|..+++..+.+.+.|..++..|+-+|+.
T Consensus 67 l~~eLk~a~~qi~~Ls~kv~eLq~ENRv 94 (96)
T PF11365_consen 67 LQEELKLAREQINELSGKVMELQYENRV 94 (96)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhcccc
Confidence 4444444555566666666666666653
No 402
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.11 E-value=2.9e+02 Score=19.82 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRI 85 (153)
Q Consensus 74 L~~eN~~L~~~~ 85 (153)
|..+...|...+
T Consensus 86 l~~~l~~l~~~~ 97 (126)
T PF13863_consen 86 LKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 403
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.03 E-value=4.4e+02 Score=21.88 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccC
Q psy3460 74 LKSENCDYKKRISNLEDTNYSL---VSQLNKLQAIIARHTAQ 112 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L---~~ql~~L~~~v~~~~~~ 112 (153)
|..+...+...+..|..+|..| -.+++.|..+|....+.
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~ 171 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455555555555565444 45666777777776653
No 404
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.97 E-value=3.2e+02 Score=24.21 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEIL----KSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 65 ~~LE~~v~~L----~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+-+|.-+..| .++..++-+++.+|+.+.+.|+.+|..|..
T Consensus 274 e~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 274 EIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444443 567778888888888888888888877654
No 405
>KOG0288|consensus
Probab=22.92 E-value=6.3e+02 Score=23.59 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~e 91 (153)
+..+...|..+..|+.||..|.++.-..+..
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999987665554433
No 406
>KOG4286|consensus
Probab=22.80 E-value=3.1e+02 Score=27.58 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
...+|=.+++.|...-..|..+..-|+..|..|-.+|..|+.+..+...
T Consensus 835 ~~~dl~AEAkaLRqHK~RLE~R~rILEdhNKQLESQLqRLr~LLrQP~s 883 (966)
T KOG4286|consen 835 RDAELIAEAKALRQHKGRLEARMQILEDHNKQLESQLHRLRQLLRQPQA 883 (966)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCC
Confidence 5567777888888888889999999999999999999999988887643
No 407
>KOG4460|consensus
Probab=22.70 E-value=7.3e+02 Score=24.27 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchh-----hHH
Q psy3460 49 NKISAQESRRKKK--EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVSI-----VYS 121 (153)
Q Consensus 49 NR~SAq~SR~RKK--eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~-----~~~ 121 (153)
.|-+-+.++++++ +.+.+++.+.+.++..-..|..++++....-..|.+.++.|...........+..-. ..-
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~ 666 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQL 666 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Confidence 3445556666654 457788888888877777788888888877788888888888776665443332221 111
Q ss_pred HHHhHHHHHHHHhh
Q psy3460 122 LVSQLNKLQAIIAR 135 (153)
Q Consensus 122 l~sq~~q~~~~~~~ 135 (153)
+..|+..|++-|++
T Consensus 667 ~~~~~~~L~~~iET 680 (741)
T KOG4460|consen 667 IPDQLRHLGNAIET 680 (741)
T ss_pred hHHHHHHHHHHHHH
Confidence 23555666666655
No 408
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.55 E-value=2.6e+02 Score=19.07 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+..+|.-+..|-........++..|+.+...|..++..+.
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555555555555555555555555443
No 409
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=22.52 E-value=6e+02 Score=24.58 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.5
Q ss_pred hhhcCC
Q psy3460 19 LQAEGY 24 (153)
Q Consensus 19 l~~~g~ 24 (153)
|...||
T Consensus 522 Ls~iGI 527 (661)
T PRK06664 522 LNQIGI 527 (661)
T ss_pred HHHCCe
Confidence 334444
No 410
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.50 E-value=2.9e+02 Score=19.60 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKK 83 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~ 83 (153)
|-+.|+..|..++..++.-|..|..
T Consensus 23 rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 23 RLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 411
>PRK00736 hypothetical protein; Provisional
Probab=22.49 E-value=2.6e+02 Score=18.92 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.+..+|.-+..|-.....-..++..|+.+...|..++..+.+
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666667777666666677777777777777777766543
No 412
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.48 E-value=4.1e+02 Score=21.36 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKS 76 (153)
Q Consensus 63 yl~~LE~~v~~L~~ 76 (153)
.+..+|.++..|..
T Consensus 37 EL~KvEeEI~TLrq 50 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQ 50 (162)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 413
>KOG3335|consensus
Probab=22.46 E-value=3.7e+02 Score=22.06 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..+..+|+.++..|+++...++..+..|...+..
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455677777777777777777777777654443
No 414
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=22.45 E-value=4.1e+02 Score=21.47 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
++|+..|+..+..+..-+..|-.+...|...-..|-...
T Consensus 20 key~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f 58 (201)
T cd07622 20 KNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVF 58 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888777776666655554433
No 415
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.38 E-value=3.8e+02 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKS---ENCDYKKRISNLEDTN 92 (153)
Q Consensus 62 eyl~~LE~~v~~L~~---eN~~L~~~~~~L~~eN 92 (153)
+.+..||.++..|+. +|..+..++..|+...
T Consensus 52 ~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~L 85 (218)
T COG3159 52 NRIRELEEELAALMENARANERLFYRLHALQLDL 85 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677777777654 6777777777776553
No 416
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.31 E-value=4.6e+02 Score=21.79 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
-|-.-++..+.++....++..-|+.++..|+.++..|+..+..+
T Consensus 63 ~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 63 TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 35556677777777778888888999999999999999888765
No 417
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.24 E-value=3.1e+02 Score=19.80 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3460 69 RKVEILKSENCDYKKRISNLED--TNYSLVSQL 99 (153)
Q Consensus 69 ~~v~~L~~eN~~L~~~~~~L~~--eN~~L~~ql 99 (153)
.+...|..||+.|+.+...-+. +|...++..
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355566666666554443333 344444444
No 418
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.22 E-value=2e+02 Score=19.20 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYK 82 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~ 82 (153)
+|.++..|+.+.+..+
T Consensus 30 iEqRLa~LE~rL~~ae 45 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAE 45 (60)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344433333333333
No 419
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.19 E-value=7.2e+02 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.++.++..+..+...+..++..+
T Consensus 444 ~~~~~~~~l~~~~~~~~~~~~~l 466 (1179)
T TIGR02168 444 ELEEELEELQEELERLEEALEEL 466 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 420
>KOG1103|consensus
Probab=22.15 E-value=3.3e+02 Score=25.12 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
++.+|.+-+.|..|+..|++-+..|+...+.|+
T Consensus 261 l~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 261 LEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 344455555556666666666666665555443
No 421
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.15 E-value=2e+02 Score=25.16 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
+-+.+||.+-..|+.+..+|..+-+.+++|.
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Em 34 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEM 34 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666666663
No 422
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=22.14 E-value=30 Score=29.47 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
-|..|++...++.+|..-...|-.+.+.|+.||..|+.+...|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555555555555555555555555555444
No 423
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=22.13 E-value=5.8e+02 Score=23.96 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCCCcccccCHHHHhhhhhcCCCCCCCCCC
Q psy3460 2 FKGSTGVLHLTEEEKRTLQAEGYPIPTRLPL 32 (153)
Q Consensus 2 ~~~~~~~~~l~~ee~~~l~~~g~~~p~~~p~ 32 (153)
|-||+|-+.-=++=+..-+..|+++|.-.|.
T Consensus 349 yVgGPGEIaYwaqLk~~F~~~g~~mP~l~PR 379 (542)
T PF10079_consen 349 YVGGPGEIAYWAQLKDVFEHFGIPMPILVPR 379 (542)
T ss_pred EecCcHHHHHHHHHHHHHHHhCCCCCeEEec
Confidence 5688885544478888888899999998774
No 424
>KOG0483|consensus
Probab=22.12 E-value=1.8e+02 Score=23.96 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..||.....|...-..|......|+.++..|+.++..+.....
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 4566666666666666666666666666666666654444333
No 425
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=22.00 E-value=2.2e+02 Score=20.01 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=11.9
Q ss_pred hhhHHHHHhHHHHHHHHhh-cc
Q psy3460 117 SIVYSLVSQLNKLQAIIAR-HT 137 (153)
Q Consensus 117 ~~~~~l~sq~~q~~~~~~~-~~ 137 (153)
...+++.-+.+....-|+. ||
T Consensus 46 ~~~~~l~d~l~~av~~FE~~HP 67 (85)
T PF14357_consen 46 AEDESLVDRLNEAVERFEASHP 67 (85)
T ss_pred ccchhHHHHHHHHHHHHHHhCC
Confidence 3345565556666666666 44
No 426
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.94 E-value=1.3e+02 Score=25.49 Aligned_cols=29 Identities=34% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
|..--.+|.+||.|...||.|+..+-+.-
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445678888888888888887655443
No 427
>KOG1510|consensus
Probab=21.65 E-value=4.1e+02 Score=20.95 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+..|..+|.+-...+..+...+..|..+++.+-.-+
T Consensus 93 i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~ 128 (139)
T KOG1510|consen 93 IKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDI 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655556666666777766665544433
No 428
>KOG4593|consensus
Probab=21.62 E-value=6.9e+02 Score=24.71 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCD---YKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~---L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.-+..|-.+++.|++.+.+ |..++..|+-+|..|...|..-......
T Consensus 275 ~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555556555544 4566666777777777777655555444
No 429
>KOG0483|consensus
Probab=21.59 E-value=1.8e+02 Score=23.89 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+.|-.....|..+|..|...+..|..+...+.....
T Consensus 115 ~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 115 ESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 344455555555555555555555555555444443
No 430
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.01 E-value=1e+03 Score=25.42 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.2
Q ss_pred HhhHHHHH
Q psy3460 48 KNKISAQE 55 (153)
Q Consensus 48 kNR~SAq~ 55 (153)
+.+.+|.+
T Consensus 328 kQaEkA~k 335 (1486)
T PRK04863 328 QDYQAASD 335 (1486)
T ss_pred HHHHHHHH
Confidence 33444433
No 431
>PF14992 TMCO5: TMCO5 family
Probab=20.92 E-value=2e+02 Score=25.14 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.+||...+.|...|+.|-.+|+.-+...+.|-.++..+...+...
T Consensus 7 ~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~ 51 (280)
T PF14992_consen 7 MDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS 51 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch
Confidence 367888889999999999999988888888888887766555443
No 432
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.86 E-value=4.4e+02 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDY 81 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L 81 (153)
+.-+.++|.++......|.+|
T Consensus 83 k~~l~evEekyrkAMv~naQL 103 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQL 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455566666665555544443
No 433
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.86 E-value=3.2e+02 Score=25.69 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+.+.....+..+...|.++.++|+++...|..++..|..
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555666666666666666666666666666554
No 434
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.82 E-value=5e+02 Score=21.69 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKS 76 (153)
Q Consensus 62 eyl~~LE~~v~~L~~ 76 (153)
.+|.+++.+...|..
T Consensus 32 ~~L~e~~kE~~~L~~ 46 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQ 46 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 435
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=20.81 E-value=5.3e+02 Score=21.96 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCcch
Q psy3460 39 SLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDT-NYSLVSQLNKLQAIIARHTAQLSNVS 117 (153)
Q Consensus 39 ~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~e-N~~L~~ql~~L~~~v~~~~~~~s~~~ 117 (153)
..|-.-+..+-+.+|.+++.+=..-|.+|+.--.....+-...-..++.++.+ ..-|+.-|..+..++.- +.+.
T Consensus 170 ~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~~l~~-----~~~~ 244 (258)
T cd07681 170 LRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQHLDL-----SSSD 244 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccc
Confidence 34445567788888998888888888888877667776666666777777655 55667777777766643 3334
Q ss_pred hhHHHHHhHHH
Q psy3460 118 IVYSLVSQLNK 128 (153)
Q Consensus 118 ~~~~l~sq~~q 128 (153)
-+++++..+++
T Consensus 245 ~~~~~~~~l~~ 255 (258)
T cd07681 245 SFHALYRDLHQ 255 (258)
T ss_pred cHHHHHHHHHh
Confidence 56666654443
No 436
>PRK14144 heat shock protein GrpE; Provisional
Probab=20.76 E-value=3.8e+02 Score=22.07 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+.+.+|..++..+..+...++.+..
T Consensus 59 ~e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 59 QKAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555444
No 437
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=20.74 E-value=3.2e+02 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
.+.-.|..+.+.|..||.+|+.++..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888887666653
No 438
>PRK14146 heat shock protein GrpE; Provisional
Probab=20.53 E-value=3.6e+02 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~ 85 (153)
.+|..++..+..+...++.+.
T Consensus 71 ~el~d~~lR~~AdfeN~rkR~ 91 (215)
T PRK14146 71 ESLKDSWARERAEFQNFKRRS 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 439
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.52 E-value=2.8e+02 Score=18.71 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..|+..|+..+..+..+...+...+......-..-..+...+.
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444444444444333
No 440
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.22 E-value=5.6e+02 Score=22.01 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMD--------ALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~--------~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
-.+..+.++++....+.+.--++ ++-+. -+..-+.....+|..+...+..-..+...|..++..|++-|..
T Consensus 140 ldel~e~~~~el~~l~~~~q~k~-~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKIQEKK-EEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777666665433222 22222 2334444556677777666555555555555555444444444
Q ss_pred h
Q psy3460 109 H 109 (153)
Q Consensus 109 ~ 109 (153)
.
T Consensus 219 L 219 (258)
T PF15397_consen 219 L 219 (258)
T ss_pred H
Confidence 3
No 441
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=20.19 E-value=5.8e+02 Score=23.42 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
+..|+.....+......++ ....++.....++.+...+.......-+
T Consensus 344 l~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fn 390 (448)
T PF05761_consen 344 LQELEELLEELQDHLDQLR-SSSELRPDISELRKERRELRREMKELFN 390 (448)
T ss_dssp HHHHHHHCHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6777777666665544333 3444445555555555555555544433
No 442
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=3.7e+02 Score=22.81 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=8.5
Q ss_pred cCHHHHhhhhh
Q psy3460 11 LTEEEKRTLQA 21 (153)
Q Consensus 11 l~~ee~~~l~~ 21 (153)
||+||+++|+.
T Consensus 1 MtpeE~qlle~ 11 (233)
T COG3416 1 MTPEEKQLLEN 11 (233)
T ss_pred CCHHHHHHHHH
Confidence 68889888754
Done!