Query psy3460
Match_columns 153
No_of_seqs 131 out of 741
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:18:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.6 9.9E-15 3.4E-19 97.2 9.1 59 41-99 1-59 (61)
2 1dh3_A Transcription factor CR 99.5 9.6E-15 3.3E-19 96.1 6.7 50 41-90 1-50 (55)
3 2wt7_A Proto-oncogene protein 99.5 6.8E-14 2.3E-18 93.9 10.0 60 41-100 2-61 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.5 2.2E-14 7.4E-19 95.9 6.8 60 41-100 1-60 (62)
5 1ci6_A Transcription factor AT 99.3 3.2E-12 1.1E-16 85.9 7.3 60 41-100 2-61 (63)
6 2dgc_A Protein (GCN4); basic d 99.2 2.2E-11 7.4E-16 82.0 6.6 49 42-90 10-58 (63)
7 3a5t_A Transcription factor MA 99.1 1.1E-12 3.7E-17 97.0 -3.7 99 4-103 1-99 (107)
8 1hjb_A Ccaat/enhancer binding 98.9 5.4E-09 1.9E-13 74.5 8.9 68 37-104 11-78 (87)
9 1gd2_E Transcription factor PA 98.9 5.1E-09 1.7E-13 72.0 8.1 58 43-100 10-67 (70)
10 1gu4_A CAAT/enhancer binding p 98.9 6.9E-09 2.4E-13 72.6 7.1 62 38-99 12-73 (78)
11 2wt7_B Transcription factor MA 98.8 3.1E-08 1.1E-12 71.1 10.6 68 32-99 18-85 (90)
12 1skn_P DNA-binding domain of S 98.6 5.1E-08 1.7E-12 69.9 4.4 62 7-69 13-90 (92)
13 2oqq_A Transcription factor HY 98.5 2E-07 6.9E-12 58.1 6.1 40 61-100 2-41 (42)
14 2kz5_A Transcription factor NF 98.2 2.7E-07 9.3E-12 66.1 0.4 52 10-62 20-87 (91)
15 2lz1_A Nuclear factor erythroi 97.8 1.3E-06 4.3E-11 62.5 -2.2 54 8-62 18-87 (90)
16 2c9l_Y EB1, zebra, BZLF1 trans 95.8 0.06 2E-06 35.4 7.6 40 44-83 4-43 (63)
17 2oxj_A Hybrid alpha/beta pepti 95.0 0.033 1.1E-06 33.0 4.0 24 63-86 2-25 (34)
18 1kd8_A GABH AIV, GCN4 acid bas 94.5 0.054 1.9E-06 32.4 3.9 27 63-89 2-28 (36)
19 1kd8_B GABH BLL, GCN4 acid bas 94.4 0.1 3.6E-06 31.2 5.1 26 63-88 2-27 (36)
20 3m48_A General control protein 94.3 0.054 1.9E-06 31.9 3.7 23 64-86 2-24 (33)
21 3c3f_A Alpha/beta peptide with 94.1 0.076 2.6E-06 31.4 4.0 24 63-86 2-25 (34)
22 2yy0_A C-MYC-binding protein; 93.8 0.15 5E-06 32.7 5.3 32 69-100 19-50 (53)
23 3c3g_A Alpha/beta peptide with 93.3 0.13 4.5E-06 30.2 4.0 22 64-85 2-23 (33)
24 2jee_A YIIU; FTSZ, septum, coi 93.3 0.4 1.4E-05 33.4 7.3 21 88-108 53-73 (81)
25 2bni_A General control protein 93.1 0.13 4.4E-06 30.5 3.9 25 62-86 1-25 (34)
26 2wq1_A General control protein 92.8 0.17 5.9E-06 29.7 4.0 23 64-86 2-24 (33)
27 1uo4_A General control protein 92.6 0.17 5.8E-06 29.9 3.9 24 63-86 2-25 (34)
28 2hy6_A General control protein 92.3 0.19 6.6E-06 29.7 3.9 24 63-86 2-25 (34)
29 2jee_A YIIU; FTSZ, septum, coi 92.1 0.75 2.6E-05 32.0 7.4 43 62-104 6-48 (81)
30 1gd2_E Transcription factor PA 91.6 1.8 6.3E-05 29.1 8.7 34 63-96 37-70 (70)
31 3a2a_A Voltage-gated hydrogen 90.7 0.84 2.9E-05 29.8 6.0 43 68-110 10-52 (58)
32 3vmx_A Voltage-gated hydrogen 90.7 1.6 5.4E-05 27.6 7.1 43 68-110 3-45 (48)
33 2dgc_A Protein (GCN4); basic d 90.4 1.6 5.5E-05 28.5 7.4 33 75-107 29-61 (63)
34 2oxj_A Hybrid alpha/beta pepti 90.1 0.54 1.9E-05 27.7 4.3 29 79-107 4-32 (34)
35 1kd8_B GABH BLL, GCN4 acid bas 90.0 0.86 2.9E-05 27.2 5.1 31 79-109 4-34 (36)
36 1nlw_A MAD protein, MAX dimeri 89.6 0.77 2.6E-05 31.3 5.5 34 60-100 45-78 (80)
37 1uii_A Geminin; human, DNA rep 89.6 1.1 3.8E-05 31.3 6.3 35 74-108 44-78 (83)
38 3he5_A Synzip1; heterodimeric 89.5 2.3 7.8E-05 26.4 7.0 24 63-86 4-27 (49)
39 1nkp_B MAX protein, MYC proto- 89.3 0.54 1.9E-05 31.8 4.5 34 60-100 45-78 (83)
40 3m91_A Proteasome-associated A 88.7 2.5 8.5E-05 26.8 7.0 39 64-102 11-49 (51)
41 3m48_A General control protein 88.3 0.67 2.3E-05 27.2 3.7 29 79-107 3-31 (33)
42 1nkp_A C-MYC, MYC proto-oncoge 88.3 1.2 4.2E-05 30.8 5.9 37 60-103 50-86 (88)
43 3c3g_A Alpha/beta peptide with 88.3 0.98 3.4E-05 26.5 4.4 29 79-107 3-31 (33)
44 1kd8_A GABH AIV, GCN4 acid bas 87.7 1.5 5.2E-05 26.1 5.1 31 79-109 4-34 (36)
45 3s9g_A Protein hexim1; cyclin 87.3 1.9 6.6E-05 31.1 6.5 18 66-83 41-58 (104)
46 1ci6_A Transcription factor AT 87.3 2.7 9.3E-05 27.3 6.8 36 71-106 25-60 (63)
47 1dh3_A Transcription factor CR 87.3 0.62 2.1E-05 29.8 3.5 32 76-107 22-53 (55)
48 3c3f_A Alpha/beta peptide with 86.8 1.3 4.6E-05 26.0 4.4 29 79-107 4-32 (34)
49 3o0z_A RHO-associated protein 86.6 3.7 0.00013 32.0 8.3 54 54-107 82-135 (168)
50 2r2v_A GCN4 leucine zipper; co 86.4 1.2 4E-05 26.3 4.0 23 63-85 2-24 (34)
51 3m9b_A Proteasome-associated A 85.6 1.4 4.7E-05 36.4 5.7 44 61-104 53-96 (251)
52 3oja_B Anopheles plasmodium-re 85.2 11 0.00039 32.5 11.6 45 62-106 537-581 (597)
53 1am9_A Srebp-1A, protein (ster 85.1 1.6 5.5E-05 29.6 5.0 25 61-85 49-73 (82)
54 3oja_B Anopheles plasmodium-re 85.1 16 0.00054 31.6 12.5 72 40-111 507-579 (597)
55 3hnw_A Uncharacterized protein 84.8 5.9 0.0002 29.5 8.5 44 61-104 74-117 (138)
56 3m91_A Proteasome-associated A 84.8 5.6 0.00019 25.2 7.1 42 68-109 8-49 (51)
57 3ghg_A Fibrinogen alpha chain; 84.1 8.5 0.00029 35.0 10.5 81 55-135 103-191 (562)
58 3efg_A Protein SLYX homolog; x 84.1 3.7 0.00013 27.9 6.4 49 62-110 14-62 (78)
59 2hy6_A General control protein 83.9 2.6 9E-05 24.8 4.8 29 79-107 4-32 (34)
60 1t2k_D Cyclic-AMP-dependent tr 83.3 5 0.00017 25.6 6.5 31 77-107 23-53 (61)
61 2wt7_B Transcription factor MA 82.9 5 0.00017 28.2 6.9 38 71-108 50-87 (90)
62 2bni_A General control protein 82.8 2.1 7.2E-05 25.2 4.0 29 79-107 4-32 (34)
63 1fmh_A General control protein 82.3 3.6 0.00012 23.6 4.8 27 64-90 3-29 (33)
64 3mq7_A Bone marrow stromal ant 81.8 10 0.00035 28.1 8.4 41 70-110 72-112 (121)
65 1uo4_A General control protein 81.7 2.3 7.8E-05 25.0 3.9 29 79-107 4-32 (34)
66 3i00_A HIP-I, huntingtin-inter 81.6 6.5 0.00022 28.8 7.4 47 57-103 35-81 (120)
67 2dfs_A Myosin-5A; myosin-V, in 80.2 17 0.00057 35.2 11.6 29 81-109 1021-1049(1080)
68 2wt7_A Proto-oncogene protein 79.9 8.5 0.00029 24.7 6.8 31 77-107 24-54 (63)
69 2wq1_A General control protein 79.8 4.8 0.00016 23.5 4.8 29 79-107 3-31 (33)
70 1dip_A Delta-sleep-inducing pe 79.7 1.4 4.9E-05 30.3 3.0 27 71-97 17-43 (78)
71 1nkp_B MAX protein, MYC proto- 79.5 5.7 0.0002 26.6 6.1 33 78-110 49-81 (83)
72 2w6a_A ARF GTPase-activating p 79.5 11 0.00037 24.9 7.4 29 68-96 26-61 (63)
73 3hnw_A Uncharacterized protein 79.4 17 0.00058 27.0 9.5 41 64-104 91-131 (138)
74 2eqb_B RAB guanine nucleotide 79.1 15 0.00051 26.2 9.2 58 62-135 12-76 (97)
75 2wuj_A Septum site-determining 79.0 2.6 8.8E-05 26.9 3.9 29 62-90 27-55 (57)
76 3mq7_A Bone marrow stromal ant 77.8 15 0.0005 27.2 8.1 36 64-99 73-108 (121)
77 3swy_A Cyclic nucleotide-gated 77.6 10 0.00035 23.5 6.3 38 66-103 2-43 (46)
78 3nmd_A CGMP dependent protein 77.2 5.5 0.00019 27.0 5.3 20 85-104 49-68 (72)
79 1dip_A Delta-sleep-inducing pe 77.2 2.9 0.0001 28.7 4.0 31 77-107 16-46 (78)
80 2v71_A Nuclear distribution pr 76.9 21 0.0007 28.2 9.4 43 59-101 39-81 (189)
81 1p9i_A Cortexillin I/GCN4 hybr 76.8 2.9 9.8E-05 23.7 3.2 17 71-87 8-24 (31)
82 2wvr_A Geminin; DNA replicatio 76.5 6.3 0.00022 31.7 6.3 32 76-107 115-146 (209)
83 1wlq_A Geminin; coiled-coil; 2 76.5 7.5 0.00026 27.1 5.9 33 74-106 36-68 (83)
84 2oqq_A Transcription factor HY 75.7 11 0.00039 23.0 6.3 23 62-84 17-39 (42)
85 4h22_A Leucine-rich repeat fli 75.4 19 0.00064 26.0 8.0 49 61-109 36-84 (103)
86 1jnm_A Proto-oncogene C-JUN; B 75.3 13 0.00045 23.6 8.8 34 76-109 22-55 (62)
87 3a7p_A Autophagy protein 16; c 74.9 26 0.00089 26.8 11.9 51 61-111 95-145 (152)
88 4emc_A Monopolin complex subun 74.7 6.4 0.00022 31.2 5.9 46 62-107 13-58 (190)
89 3swf_A CGMP-gated cation chann 74.6 12 0.00042 25.4 6.5 44 65-108 3-50 (74)
90 1deb_A APC protein, adenomatou 74.5 14 0.00048 23.6 7.3 22 65-86 6-27 (54)
91 2zqm_A Prefoldin beta subunit 73.8 16 0.00056 25.1 7.4 39 62-100 70-108 (117)
92 2r2v_A GCN4 leucine zipper; co 73.5 9.4 0.00032 22.4 4.9 30 79-108 4-33 (34)
93 1hjb_A Ccaat/enhancer binding 73.5 12 0.00041 26.0 6.5 31 77-107 37-67 (87)
94 3o0z_A RHO-associated protein 72.2 32 0.0011 26.7 9.5 53 55-109 29-81 (168)
95 1deq_A Fibrinogen (alpha chain 71.7 25 0.00086 30.7 9.4 50 61-110 112-161 (390)
96 1zme_C Proline utilization tra 71.7 3.4 0.00012 26.1 3.1 26 60-85 42-67 (70)
97 3s4r_A Vimentin; alpha-helix, 71.1 11 0.00036 26.3 5.8 34 74-107 54-87 (93)
98 2xdj_A Uncharacterized protein 70.9 22 0.00076 24.3 8.0 46 63-108 21-66 (83)
99 2w6a_A ARF GTPase-activating p 70.1 20 0.0007 23.5 7.4 26 82-107 26-51 (63)
100 3m9b_A Proteasome-associated A 68.7 4.9 0.00017 33.2 4.1 50 68-117 53-102 (251)
101 2yy0_A C-MYC-binding protein; 68.6 12 0.00041 23.6 5.1 32 76-107 19-50 (53)
102 4b4t_K 26S protease regulatory 68.5 9.4 0.00032 33.1 6.1 41 63-103 50-90 (428)
103 2v66_B Nuclear distribution pr 68.4 28 0.00095 25.2 7.7 38 63-100 36-73 (111)
104 3oa7_A Head morphogenesis prot 67.8 22 0.00074 28.5 7.5 58 44-104 15-72 (206)
105 2oa5_A Hypothetical protein BQ 67.5 3.2 0.00011 30.3 2.5 23 64-86 10-32 (110)
106 1fxk_A Prefoldin; archaeal pro 67.1 18 0.00063 24.5 6.3 38 62-99 65-102 (107)
107 1gu4_A CAAT/enhancer binding p 66.8 9.3 0.00032 26.0 4.6 32 77-108 37-68 (78)
108 3cvf_A Homer-3, homer protein 65.9 29 0.00099 23.7 7.9 27 67-93 11-37 (79)
109 1a93_B MAX protein, coiled coi 65.5 12 0.0004 22.0 4.2 25 76-100 7-31 (34)
110 3ra3_A P1C; coiled coil domain 64.3 9.2 0.00031 21.1 3.3 24 73-96 4-27 (28)
111 1wt6_A Myotonin-protein kinase 64.0 33 0.0011 23.7 8.3 57 49-108 14-70 (81)
112 1hlo_A Protein (transcription 63.6 7 0.00024 26.1 3.4 22 61-82 56-77 (80)
113 1m1j_A Fibrinogen alpha subuni 62.9 86 0.0029 28.1 11.6 89 21-109 41-158 (491)
114 4ati_A MITF, microphthalmia-as 62.6 3.3 0.00011 30.0 1.8 42 60-105 72-113 (118)
115 1go4_E MAD1 (mitotic arrest de 62.2 18 0.00062 25.8 5.6 31 78-108 14-44 (100)
116 1go4_E MAD1 (mitotic arrest de 62.0 19 0.00065 25.7 5.7 28 63-90 13-40 (100)
117 4ath_A MITF, microphthalmia-as 61.1 38 0.0013 23.4 7.4 41 60-104 37-77 (83)
118 4etp_A Kinesin-like protein KA 60.7 22 0.00075 30.5 6.9 32 66-97 7-38 (403)
119 1p9i_A Cortexillin I/GCN4 hybr 60.6 17 0.00058 20.5 4.1 26 81-106 4-29 (31)
120 3he5_B Synzip2; heterodimeric 59.8 29 0.00098 21.6 6.5 42 67-108 8-49 (52)
121 3oja_A Leucine-rich immune mol 58.7 61 0.0021 27.3 9.3 44 67-110 426-469 (487)
122 2zxx_A Geminin; coiled-coil, c 57.1 26 0.00088 24.0 5.4 27 76-102 34-60 (79)
123 1zxa_A CGMP-dependent protein 56.2 27 0.00091 23.2 5.2 34 60-107 23-56 (67)
124 2aze_A Transcription factor DP 55.8 55 0.0019 25.0 7.7 31 38-74 8-38 (155)
125 3cve_A Homer protein homolog 1 55.4 44 0.0015 22.4 9.7 31 66-96 4-34 (72)
126 3ra3_B P2F; coiled coil domain 55.2 12 0.0004 20.7 2.7 21 74-94 5-25 (28)
127 3mud_A DNA repair protein XRCC 54.2 66 0.0023 25.0 8.0 40 62-101 128-167 (175)
128 2v71_A Nuclear distribution pr 53.9 57 0.0019 25.6 7.7 41 64-104 90-130 (189)
129 1lwu_C Fibrinogen gamma chain; 53.7 43 0.0015 28.2 7.4 44 63-106 13-56 (323)
130 3cve_A Homer protein homolog 1 53.4 48 0.0016 22.2 8.0 40 63-102 8-47 (72)
131 3ol1_A Vimentin; structural ge 53.1 52 0.0018 23.5 6.9 28 63-90 21-48 (119)
132 2er8_A Regulatory protein Leu3 52.8 8.2 0.00028 24.5 2.2 22 60-81 47-68 (72)
133 2akf_A Coronin-1A; coiled coil 52.2 23 0.0008 20.2 3.8 25 66-90 3-27 (32)
134 3s9g_A Protein hexim1; cyclin 51.5 64 0.0022 23.1 8.4 22 62-83 65-86 (104)
135 4ath_A MITF, microphthalmia-as 51.4 43 0.0015 23.1 5.8 32 61-92 48-79 (83)
136 2zvf_A Alanyl-tRNA synthetase; 50.9 37 0.0013 24.8 6.0 20 66-85 29-48 (171)
137 3cvf_A Homer-3, homer protein 50.8 56 0.0019 22.3 8.0 30 77-106 7-36 (79)
138 3u06_A Protein claret segregat 50.8 49 0.0017 28.5 7.5 34 66-99 7-40 (412)
139 1fxk_C Protein (prefoldin); ar 49.8 65 0.0022 22.7 7.7 36 67-102 93-128 (133)
140 3w03_C DNA repair protein XRCC 49.8 43 0.0015 26.2 6.3 35 62-103 145-179 (184)
141 4emc_A Monopolin complex subun 49.7 75 0.0026 25.1 7.7 45 63-107 21-65 (190)
142 2zxx_A Geminin; coiled-coil, c 49.4 60 0.0021 22.2 7.3 38 62-100 28-65 (79)
143 2ve7_C Kinetochore protein NUF 49.3 29 0.001 27.9 5.5 67 37-110 116-182 (250)
144 2wvr_A Geminin; DNA replicatio 49.1 96 0.0033 24.8 8.3 40 72-111 118-160 (209)
145 2j5u_A MREC protein; bacterial 48.4 7.9 0.00027 31.2 2.0 35 74-108 24-61 (255)
146 2oto_A M protein; helical coil 48.3 78 0.0027 23.2 7.4 28 65-92 53-80 (155)
147 2w83_C C-JUN-amino-terminal ki 48.1 63 0.0022 22.1 7.7 27 81-107 35-61 (77)
148 2xdj_A Uncharacterized protein 48.0 63 0.0021 22.0 9.8 30 78-107 22-51 (83)
149 1t6f_A Geminin; coiled-coil, c 47.3 42 0.0014 19.8 4.8 29 75-103 6-34 (37)
150 3s4r_A Vimentin; alpha-helix, 47.2 67 0.0023 22.1 8.0 20 70-89 24-43 (93)
151 3nmd_A CGMP dependent protein 47.1 63 0.0021 21.7 7.7 28 60-87 38-65 (72)
152 2ve7_C Kinetochore protein NUF 46.5 30 0.001 27.9 5.1 60 50-109 136-202 (250)
153 1gk7_A Vimentin; intermediate 46.3 33 0.0011 20.3 4.0 18 82-99 19-36 (39)
154 3brv_B NF-kappa-B essential mo 46.1 65 0.0022 21.6 6.0 34 71-107 10-43 (70)
155 3w03_C DNA repair protein XRCC 45.8 52 0.0018 25.7 6.3 25 62-86 152-176 (184)
156 2pnv_A Small conductance calci 45.5 33 0.0011 20.9 4.0 30 71-100 11-40 (43)
157 4ani_A Protein GRPE; chaperone 45.1 71 0.0024 25.4 7.1 13 126-138 146-158 (213)
158 3a7p_A Autophagy protein 16; c 44.5 1E+02 0.0035 23.5 9.0 40 60-99 80-119 (152)
159 3u06_A Protein claret segregat 44.4 67 0.0023 27.6 7.3 43 61-103 16-58 (412)
160 3q0x_A Centriole protein; cent 44.4 77 0.0026 25.5 7.2 55 42-102 164-218 (228)
161 2j5u_A MREC protein; bacterial 44.1 11 0.00037 30.4 2.1 36 65-100 22-60 (255)
162 3mq9_A Bone marrow stromal ant 43.8 1.4E+02 0.0049 24.9 11.3 24 84-107 444-467 (471)
163 3ol1_A Vimentin; structural ge 43.5 62 0.0021 23.1 6.0 61 37-100 19-79 (119)
164 1l8d_A DNA double-strand break 43.5 75 0.0026 21.6 7.0 36 64-99 66-101 (112)
165 1fmh_B General control protein 42.7 46 0.0016 18.9 4.4 28 78-105 3-30 (33)
166 3swk_A Vimentin; cytoskeleton, 41.6 35 0.0012 23.2 4.1 36 64-99 2-37 (86)
167 1ik9_A DNA repair protein XRCC 41.6 86 0.003 24.7 7.0 27 64-90 141-167 (213)
168 2aqe_A Transcriptional adaptor 41.5 18 0.00062 24.9 2.7 24 2-25 14-37 (90)
169 4etp_A Kinesin-like protein KA 41.1 84 0.0029 26.8 7.4 43 61-103 16-58 (403)
170 3rrk_A V-type ATPase 116 kDa s 40.9 86 0.0029 25.4 7.2 41 64-104 94-137 (357)
171 3he4_A Synzip6; heterodimeric 40.8 66 0.0022 20.2 5.8 34 64-97 19-52 (56)
172 3ghg_A Fibrinogen alpha chain; 40.4 1.4E+02 0.0047 27.2 8.8 74 36-110 58-144 (562)
173 2oa5_A Hypothetical protein BQ 40.0 16 0.00056 26.6 2.3 23 79-101 11-33 (110)
174 1l8d_A DNA double-strand break 39.8 87 0.003 21.3 6.4 40 63-102 4-43 (112)
175 1lwu_C Fibrinogen gamma chain; 39.8 1.1E+02 0.0036 25.8 7.7 18 85-102 28-45 (323)
176 1fzc_C Fibrin; blood coagulati 39.2 17 0.00057 30.7 2.6 46 62-107 4-49 (319)
177 2aze_A Transcription factor DP 39.1 1E+02 0.0035 23.5 6.8 37 71-107 7-43 (155)
178 1nkp_A C-MYC, MYC proto-oncoge 38.7 54 0.0019 22.2 4.8 31 78-108 54-84 (88)
179 3oja_A Leucine-rich immune mol 38.3 1.8E+02 0.0061 24.4 10.4 45 54-98 427-471 (487)
180 3htk_A Structural maintenance 37.9 69 0.0024 19.6 8.5 45 60-104 10-54 (60)
181 1zxa_A CGMP-dependent protein 37.5 60 0.002 21.5 4.6 28 83-110 25-52 (67)
182 4dzn_A Coiled-coil peptide CC- 37.1 58 0.002 18.5 4.8 25 72-96 5-29 (33)
183 1fxk_C Protein (prefoldin); ar 37.1 1.1E+02 0.0037 21.5 6.7 34 65-98 98-131 (133)
184 4b4t_K 26S protease regulatory 37.0 68 0.0023 27.7 6.2 49 61-109 41-89 (428)
185 2w83_C C-JUN-amino-terminal ki 36.9 78 0.0027 21.6 5.2 31 70-100 10-40 (77)
186 1gmj_A ATPase inhibitor; coile 36.7 1E+02 0.0035 21.2 9.3 28 76-103 51-78 (84)
187 3u1c_A Tropomyosin alpha-1 cha 35.9 1.1E+02 0.0036 21.2 10.9 37 64-100 32-68 (101)
188 1wlq_A Geminin; coiled-coil; 2 35.7 1.1E+02 0.0037 21.1 8.3 35 74-108 43-80 (83)
189 4egw_A Magnesium transport pro 35.5 1.6E+02 0.0054 23.0 9.6 88 60-147 169-278 (280)
190 3e98_A GAF domain of unknown f 34.6 1.4E+02 0.0047 23.8 7.3 34 67-100 70-106 (252)
191 3lay_A Zinc resistance-associa 33.3 1.6E+02 0.0055 22.5 9.8 24 30-53 66-89 (175)
192 2wg5_A General control protein 33.3 35 0.0012 24.0 3.2 13 91-103 22-34 (109)
193 2elj_A Transcriptional adapter 33.0 17 0.00059 24.9 1.4 24 2-25 14-37 (88)
194 2cuj_A Transcriptional adaptor 32.6 28 0.00097 24.8 2.6 24 2-25 32-55 (108)
195 3vkg_A Dynein heavy chain, cyt 32.4 2.9E+02 0.01 30.2 11.0 47 46-92 2019-2065(3245)
196 1wt6_A Myotonin-protein kinase 32.2 1.2E+02 0.0042 20.8 9.8 54 42-95 18-71 (81)
197 1ik9_A DNA repair protein XRCC 32.1 1.7E+02 0.0059 22.9 7.4 21 66-86 136-156 (213)
198 1lrz_A FEMA, factor essential 32.1 1.9E+02 0.0066 24.1 8.2 20 62-81 247-266 (426)
199 3kin_B Kinesin heavy chain; mo 32.0 80 0.0027 22.4 5.0 22 72-93 92-113 (117)
200 3efg_A Protein SLYX homolog; x 31.7 1.1E+02 0.0039 20.3 6.9 39 65-103 24-62 (78)
201 3ljm_A Coil Ser L9C; de novo d 31.7 71 0.0024 17.9 4.3 24 65-88 4-27 (31)
202 3q0x_A Centriole protein; cent 31.6 2E+02 0.0068 23.0 8.0 43 67-109 169-211 (228)
203 1jcd_A Major outer membrane li 31.4 98 0.0033 19.4 7.7 29 72-100 7-35 (52)
204 1nlw_A MAD protein, MAX dimeri 31.0 1.2E+02 0.004 20.2 6.1 31 77-107 48-78 (80)
205 2yko_A LINE-1 ORF1P; RNA-bindi 30.8 1.7E+02 0.0059 23.6 7.2 46 64-109 8-53 (233)
206 1am9_A Srebp-1A, protein (ster 30.7 1.2E+02 0.004 20.1 7.4 25 79-103 53-77 (82)
207 3vkg_A Dynein heavy chain, cyt 30.7 2.7E+02 0.0091 30.6 10.3 38 63-100 2029-2066(3245)
208 2z5i_A TM, general control pro 30.2 1E+02 0.0034 19.1 6.4 36 65-100 8-43 (52)
209 2wg5_A General control protein 29.1 57 0.0019 22.9 3.7 24 87-110 11-34 (109)
210 2lw1_A ABC transporter ATP-bin 28.7 1.3E+02 0.0045 20.0 7.4 22 64-85 24-45 (89)
211 1uii_A Geminin; human, DNA rep 28.0 1.5E+02 0.0051 20.4 8.0 28 72-99 49-76 (83)
212 2xus_A Breast cancer metastasi 27.8 1.1E+02 0.0039 19.0 6.0 24 58-85 6-29 (49)
213 4b4t_J 26S protease regulatory 26.9 84 0.0029 27.1 5.1 41 62-102 25-65 (405)
214 3he4_B Synzip5; heterodimeric 26.8 1.1E+02 0.0037 18.5 5.8 14 61-74 9-22 (46)
215 1hwt_C Protein (heme activator 26.7 29 0.001 22.1 1.7 22 60-81 56-77 (81)
216 3he4_A Synzip6; heterodimeric 26.6 1.2E+02 0.0041 18.9 5.3 34 75-108 16-49 (56)
217 3u1c_A Tropomyosin alpha-1 cha 26.6 1.6E+02 0.0054 20.3 12.0 52 58-109 19-70 (101)
218 3gpv_A Transcriptional regulat 26.6 1.7E+02 0.0059 21.0 6.1 33 74-106 100-132 (148)
219 2v4h_A NF-kappa-B essential mo 26.2 1.9E+02 0.0063 20.9 7.9 17 88-104 88-104 (110)
220 3he5_A Synzip1; heterodimeric 25.9 1.2E+02 0.004 18.5 5.6 8 88-95 15-22 (49)
221 1yke_B RNA polymerase II holoe 25.7 2.1E+02 0.0071 21.3 6.5 35 67-101 90-124 (151)
222 1ic2_A Tropomyosin alpha chain 25.7 1.4E+02 0.005 19.5 11.7 47 62-108 27-73 (81)
223 1deb_A APC protein, adenomatou 25.6 1.3E+02 0.0045 19.0 7.4 32 79-110 6-37 (54)
224 2v66_B Nuclear distribution pr 25.4 1.9E+02 0.0065 20.7 7.4 14 82-95 41-54 (111)
225 3sjd_D Golgi to ER traffic pro 25.4 77 0.0026 19.6 3.3 26 27-52 9-34 (46)
226 2zdi_C Prefoldin subunit alpha 25.0 1.9E+02 0.0067 20.8 7.2 36 68-103 104-139 (151)
227 2l5g_A GPS2 protein, G protein 24.7 1.2E+02 0.004 18.1 4.2 17 79-95 18-34 (38)
228 1ytz_T Troponin T; muscle, THI 24.7 1.9E+02 0.0065 20.5 6.7 18 75-92 48-65 (107)
229 1ykh_B RNA polymerase II holoe 24.7 2E+02 0.0069 20.8 6.5 33 68-100 91-123 (132)
230 1j1d_C Troponin I, TNI; THIN f 24.6 2.1E+02 0.0073 21.1 6.6 16 76-91 65-80 (133)
231 3qh9_A Liprin-beta-2; coiled-c 24.4 1.7E+02 0.006 20.0 8.0 37 64-100 28-64 (81)
232 2ve7_A Kinetochore protein HEC 24.2 1.6E+02 0.0056 24.1 6.2 28 63-90 186-213 (315)
233 3coq_A Regulatory protein GAL4 24.1 83 0.0028 20.1 3.6 21 61-81 44-64 (89)
234 1t3j_A Mitofusin 1; coiled coi 24.1 1.9E+02 0.0065 20.3 7.7 39 63-101 48-89 (96)
235 3swk_A Vimentin; cytoskeleton, 24.0 1.7E+02 0.0058 19.7 5.8 27 80-106 4-30 (86)
236 1m1j_C Fibrinogen gamma chain; 23.8 3.2E+02 0.011 23.6 8.2 24 77-100 106-129 (409)
237 1m1j_C Fibrinogen gamma chain; 23.3 2.6E+02 0.009 24.1 7.5 48 63-110 85-132 (409)
238 1hlo_A Protein (transcription 23.2 1.4E+02 0.0046 19.5 4.6 13 88-100 62-74 (80)
239 3a7o_A Autophagy protein 16; c 23.1 1.8E+02 0.0061 19.6 8.2 44 60-103 30-73 (75)
240 1r8e_A Multidrug-efflux transp 22.7 2.6E+02 0.0088 21.3 7.4 16 13-28 19-34 (278)
241 1j1d_B Troponin T, TNT; THIN f 22.6 2.1E+02 0.0071 20.3 5.9 22 74-95 47-68 (106)
242 2oto_A M protein; helical coil 22.5 2.3E+02 0.0078 20.6 7.0 25 75-99 49-73 (155)
243 2gkw_A TNF receptor-associated 21.7 1.8E+02 0.006 21.7 5.5 17 65-81 3-19 (192)
244 2zdi_C Prefoldin subunit alpha 21.5 1.5E+02 0.0053 21.3 5.0 35 64-98 107-141 (151)
245 2ve7_A Kinetochore protein HEC 21.5 1.3E+02 0.0045 24.7 5.1 22 70-91 186-207 (315)
246 3viq_B Mating-type switching p 21.4 2E+02 0.007 19.7 6.7 21 67-87 6-26 (85)
247 1s1c_X RHO-associated, coiled- 21.4 1.9E+02 0.0064 19.3 5.7 31 66-96 3-33 (71)
248 2xv5_A Lamin-A/C; structural p 20.4 1.9E+02 0.0066 19.0 8.1 52 57-108 7-58 (74)
249 1rtm_1 Mannose-binding protein 20.3 1.4E+02 0.0049 20.6 4.5 25 81-105 2-26 (149)
250 1pyi_A Protein (pyrimidine pat 20.2 87 0.003 20.5 3.1 15 61-75 47-61 (96)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.58 E-value=9.9e-15 Score=97.21 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=56.5
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
|+.+|+.+||+||++||+||++|+.+||.++..|+.+|..|..++..|+.++..|++.|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999998876
No 2
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.55 E-value=9.6e-15 Score=96.12 Aligned_cols=50 Identities=42% Similarity=0.638 Sum_probs=45.0
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999888888887766653
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.53 E-value=6.8e-14 Score=93.92 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=56.1
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|+.+|+.+||+||++||+||++|+.+|+.++..|+.+|..|..++..|..+...|+..|.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999888888887664
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.52 E-value=2.2e-14 Score=95.93 Aligned_cols=60 Identities=30% Similarity=0.464 Sum_probs=53.6
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|..+|..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..++..|++.|.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999988764
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.33 E-value=3.2e-12 Score=85.95 Aligned_cols=60 Identities=27% Similarity=0.331 Sum_probs=51.7
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 41 KKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 41 Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|+.+++.+||+||++||.||++++.+|+.++..|+.+|..|+.++..|+.|+..|++-+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999999999999987664
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.22 E-value=2.2e-11 Score=82.01 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=40.7
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 42 KIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
..++..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456999999999999999999999999999999998886655543
No 7
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=99.13 E-value=1.1e-12 Score=96.97 Aligned_cols=99 Identities=27% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCcccccCHHHHhhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 4 GSTGVLHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKK 83 (153)
Q Consensus 4 ~~~~~~~l~~ee~~~l~~~g~~~p~~~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~ 83 (153)
||+|.+.+|+||--.+-..-+---. ..+++++...+|.+||.+|||.|||.||.||.+.+.+||.++..|..+...|..
T Consensus 1 ~~~~~~~~sd~~Lv~m~v~elN~~L-~~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~ 79 (107)
T 3a5t_A 1 GSHMGTSLTDEELVTMSVRELNQHL-RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79 (107)
T ss_dssp --CCCCCCCHHHHHHSCHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTS
T ss_pred CCCCCCCCCHHHHhcCCHHHHHHHH-hCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999886443110000000 257899999999999999999999999999999999999888777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 84 RISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 84 ~~~~L~~eN~~L~~ql~~L~ 103 (153)
....|..|...|+...+.|.
T Consensus 80 En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 80 ENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp TTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.93 E-value=5.4e-09 Score=74.51 Aligned_cols=68 Identities=25% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
.++.+-..|..+|.+||++||++++....+++.++..|+.+|..|+.+|..|..|...|+.-+..+-.
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 33445556688999999999999999999999999999999999999999888888888877765443
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.91 E-value=5.1e-09 Score=71.95 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=45.2
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 43 IRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 43 ~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+|+..||.|++.+|.||++||.+||.+|..|+..+..|...+..|..++..|..++.
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998888766544444444444444443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.85 E-value=6.9e-09 Score=72.58 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
++..-..|..+|.+||++||++++....+++.++..|+.+|..|+.+|..|..|+..|++-|
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556789999999999999999999999999999999999999998888888887654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.85 E-value=3.1e-08 Score=71.06 Aligned_cols=68 Identities=28% Similarity=0.269 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 32 LTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 32 ~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+|.++-..+|..||-+|||.+|+.||.||..-...||.++..|..+...|+..+..+..+-..+++.+
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999888877766666666654444444444444443
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=98.56 E-value=5.1e-08 Score=69.94 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=51.4
Q ss_pred cccccCHHHHhhhhhcCCCCCCC----------------CCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHH
Q psy3460 7 GVLHLTEEEKRTLQAEGYPIPTR----------------LPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDALER 69 (153)
Q Consensus 7 ~~~~l~~ee~~~l~~~g~~~p~~----------------~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~ 69 (153)
..-.+|.+|+++ ...++|+|.. ..+|.++-...+.+||..|||+||++||+||.+.+..|+.
T Consensus 13 ~~~~~srDE~ra-~al~lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 13 KRGRQSKDEQLA-SDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp --CCCCHHHHHH-HHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred cccccchhHHHH-HHhCCCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356689999998 5888888866 4678888889999999999999999999999998887764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=98.54 E-value=2e-07 Score=58.06 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|.|+.+||.++++|+..|.+|..+++.|++||.+|++-+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6899999999999999999999999999999999999764
No 14
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=98.17 E-value=2.7e-07 Score=66.08 Aligned_cols=52 Identities=38% Similarity=0.574 Sum_probs=45.8
Q ss_pred ccCHHHHhhhhhcCCCCCCC----------------CCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHH
Q psy3460 10 HLTEEEKRTLQAEGYPIPTR----------------LPLTKTEEKSLKKIRRKIKNKISAQESRRKKKE 62 (153)
Q Consensus 10 ~l~~ee~~~l~~~g~~~p~~----------------~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKe 62 (153)
.+|.+|+++ ...++|+|.. .++|.++-...+.+||..|||+|||.||+||.+
T Consensus 20 ~~srDE~ra-~~l~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 20 AGSRDERRA-LAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CCCHHHHHH-HHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred hhchhHHHH-HHhCCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 578999988 5889888876 568888899999999999999999999999964
No 15
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.77 E-value=1.3e-06 Score=62.55 Aligned_cols=54 Identities=35% Similarity=0.529 Sum_probs=46.4
Q ss_pred ccccCHHHHhhhhhcCCCCCCC----------------CCCChhHHHHHHHHHHHHHhhHHHHHHHHhHHH
Q psy3460 8 VLHLTEEEKRTLQAEGYPIPTR----------------LPLTKTEEKSLKKIRRKIKNKISAQESRRKKKE 62 (153)
Q Consensus 8 ~~~l~~ee~~~l~~~g~~~p~~----------------~p~t~~eek~~Kr~rR~lkNR~SAq~SR~RKKe 62 (153)
.-.+|.||+++ ...++|+|.. ..+|.++-...+.+||.-|||+|||.||+||..
T Consensus 18 ~~~~srDE~ra-~~~~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 18 EAHLTRDELRA-KALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp CCCCCHHHHHH-HHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred hhccchhHHHH-HHcCCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 44579999998 6889998876 457888888999999999999999999999853
No 16
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.80 E-value=0.06 Score=35.38 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.6
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 44 RRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKK 83 (153)
Q Consensus 44 rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~ 83 (153)
+...+||+|+++||.|=+..++..-.-...-.+||..|+-
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~ 43 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 4567999999999999988887776666666666666653
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=95.05 E-value=0.033 Score=32.98 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+|.+||.+|+.|-.+|.+|..++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 577888888877777777665443
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.45 E-value=0.054 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~ 89 (153)
+|.+||.+|+.|..+|..|...+..|+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467888888888777777766554443
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.37 E-value=0.1 Score=31.19 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
+|.+||.+|+.|..+|..|..++..|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 57788888888777777776544433
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.32 E-value=0.054 Score=31.91 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
|.+||.+|+.|-.+|..|...+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHH
Confidence 56777777777776666665443
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.11 E-value=0.076 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+|.+||.+|+.|-.+|..|...+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 577888888887777776665443
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.76 E-value=0.15 Score=32.73 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 69 RKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 69 ~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..+..|..||.+|+.++..|..++..|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999988775
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.29 E-value=0.13 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~ 85 (153)
|.+||.+|+.|-.+|..|..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 5677777777776666665533
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.28 E-value=0.4 Score=33.43 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy3460 88 LEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 88 L~~eN~~L~~ql~~L~~~v~~ 108 (153)
|..+|..|+++....+..+..
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666555544444443
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.14 E-value=0.13 Score=30.48 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
++|.+||.+|+.|-.+|..|...+.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHH
Confidence 3577888888887777776665443
No 26
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.75 E-value=0.17 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
|.+||.+|+.|..+|..|..++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHH
Confidence 67888888888777777765443
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.58 E-value=0.17 Score=29.93 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+|.+||.+|+.|-.+|..|...+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 467888888887777777765443
No 28
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=92.32 E-value=0.19 Score=29.69 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+|.+||.+|+.|-.+|..|...+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 467788888877777776665443
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.11 E-value=0.75 Score=32.01 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+-++.||.+|..+-....-|+..++.|+.+|..|.++...+++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888777777777777777777776666665443
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.64 E-value=1.8 Score=29.05 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
.+.+||.....+..+|..|+.++..|..||..|+
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777777777888888888888887777653
No 31
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=90.70 E-value=0.84 Score=29.80 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|.++..|...|-.|-.++..|+..+..--+++..|..++.+.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6678889999999999999999999999999999999988754
No 32
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=90.67 E-value=1.6 Score=27.64 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
|.++.+|..-|..|-.++..|+.....+.+++..|+.++.+..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 5678889999999999999999999999999999999887653
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=90.44 E-value=1.6 Score=28.53 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
......|..++..|+.+|..|..++..|+..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999999999988887664
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.14 E-value=0.54 Score=27.73 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|++++.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 57888999999999999999999998875
No 35
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.97 E-value=0.86 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
++|..+++.|-.+|..|..++..|+.++..+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 5788888889999999999999999888765
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.61 E-value=0.77 Score=31.34 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-.+||..|+.+...+..++..|+. ++..|+.+|.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~-------e~~~L~~~L~ 78 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQR-------EQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 358998888888777777666665 5566666654
No 37
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=89.58 E-value=1.1 Score=31.30 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
--.||..|..++..|+.++..|++++..|+.++..
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999887754
No 38
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.54 E-value=2.3 Score=26.36 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.+.+||.+|..|+.||..|+.+.-
T Consensus 4 lvaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcc
Confidence 467899999999999998876543
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=89.32 E-value=0.54 Score=31.80 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-.+||..|+.++..|..+...|+. +|..|.++|.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~-------~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKR-------QNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 356777777776666555555544 5566665554
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=88.72 E-value=2.5 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
+.+|..++..|...|..|-.-+.....+...|+.+|..|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666665543
No 41
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.31 E-value=0.67 Score=27.21 Aligned_cols=29 Identities=14% Similarity=0.462 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|++++.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 46888999999999999999999998764
No 42
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=88.30 E-value=1.2 Score=30.77 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
-.+||..|+.+...+..+... |..+|..|+.++..|+
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~-------L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDL-------LRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 357888877777666655554 4457777777776653
No 43
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=88.29 E-value=0.98 Score=26.46 Aligned_cols=29 Identities=7% Similarity=0.339 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|++++.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 57888999999999999999999998875
No 44
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=87.70 E-value=1.5 Score=26.10 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
++|..+++.|-.+|..|..++..|+.++..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 5688888888889999999999998888765
No 45
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.34 E-value=1.9 Score=31.14 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKK 83 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~ 83 (153)
+||.++..++.+|..|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666655543
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.27 E-value=2.7 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
...|+.+...|..+...|..+...|..++..|..++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555444
No 47
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=87.25 E-value=0.62 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
....+|..++..|+.+|..|+.++..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577888899999999999999998876554
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.82 E-value=1.3 Score=26.03 Aligned_cols=29 Identities=3% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|++++.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 57888899999999999999999988775
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.64 E-value=3.7 Score=31.99 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 54 QESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 54 q~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.|.+-.+.+.+|+.++..|..+...++.+...+..+|..|-..+..|..-.+
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999888876665444
No 50
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=86.38 E-value=1.2 Score=26.33 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~ 85 (153)
+|.+||.+|+.|-+++..|..++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHH
Confidence 46777877777766666665433
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=85.55 E-value=1.4 Score=36.45 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
-..+.+|+.++..|...|..|...+..+..|...|+.+++.|++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44567788888888888888888888888888888888877663
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.15 E-value=11 Score=32.51 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+-.+.|+.++..++.....-+.++..+..|+..+++++.+|...+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555566666666666666666666655544
No 53
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=85.08 E-value=1.6 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~ 85 (153)
-+||..|+.++..|..++..|+..+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566565555555555555555443
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.06 E-value=16 Score=31.58 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 40 LKKIRRKIKNKISAQESR-RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 40 ~Kr~rR~lkNR~SAq~SR-~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
.++....++-+.+..... ++-++.++.+..+.+.++.+...|+.+++..+.....|++++..+..-+.....
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333 333445555556666666666666666666666666666666665555554443
No 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.85 E-value=5.9 Score=29.51 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
++....|+.+++.+..|...|+..+..++.++..+..++..|+.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666655555555555555444444444444444333
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.76 E-value=5.6 Score=25.18 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|.++..|..++..|..+...|......-++++..|+..|...
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778888888888888888888888899999888887653
No 57
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.11 E-value=8.5 Score=35.05 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=52.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcc-h--h---hHHHHHhH
Q psy3460 55 ESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA--QLSNV-S--I---VYSLVSQL 126 (153)
Q Consensus 55 ~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~--~~s~~-~--~---~~~l~sq~ 126 (153)
.....+.+|.++||.++..|+.+...-..++..|+.-...++.++++|...|.-+.. +.+|. . + .-+...|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHH
Confidence 344556667778888888888776665588888888888888888888766544321 12221 1 1 23334566
Q ss_pred HHHHHHHhh
Q psy3460 127 NKLQAIIAR 135 (153)
Q Consensus 127 ~q~~~~~~~ 135 (153)
-||.++++.
T Consensus 183 KQLeQv~a~ 191 (562)
T 3ghg_A 183 KQLEQVIAK 191 (562)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 677777665
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.11 E-value=3.7 Score=27.92 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
++|.+||.++...+.-..+|..-+..-..+...|..++..|...+....
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788899999988888888888887777788888888777776665443
No 59
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.88 E-value=2.6 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|+.++.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 57888899999999999999999988875
No 60
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.28 E-value=5 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
....|..++..|+.+|..|..++..|...+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777666665544
No 61
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.86 E-value=5 Score=28.22 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
...|+.++..|..+++.|..|+..+..++..++..+..
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999888876654
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.83 E-value=2.1 Score=25.22 Aligned_cols=29 Identities=3% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|+.++.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 56888899999999999999999988764
No 63
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=82.32 E-value=3.6 Score=23.59 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
+..||.+|...+.+|-+|...+..|+-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456777777777777777766665554
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.82 E-value=10 Score=28.05 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+++.|+.|+..|..+++....+...|+.+...+...+....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 35555555666666666666666677776666666665543
No 65
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.71 E-value=2.3 Score=25.05 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|.+++..|+.++.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 56788888888899999999998888764
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.59 E-value=6.5 Score=28.82 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 57 RRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 57 R~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
...-..|+.+|+.+|..|+.+...=+........+|..|+.++..+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999999999999988888888889999998888664
No 67
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.16 E-value=17 Score=35.22 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|..++..|+.+|..|++++..|...+...
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777776555443
No 68
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.93 E-value=8.5 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
....|..++..|+.+|..|..++..|...+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766665544
No 69
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=79.79 E-value=4.8 Score=23.51 Aligned_cols=29 Identities=7% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++|..+++.|-.+|..|..++..|+.++.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56788888888899999999988888764
No 70
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=79.70 E-value=1.4 Score=30.30 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
|+.|.....+|..++..|+.||..|+.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556665554
No 71
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=79.55 E-value=5.7 Score=26.56 Aligned_cols=33 Identities=9% Similarity=-0.049 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
...|..++..|+.+...|+.+...|...+...+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777888888888888888776543
No 72
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=79.52 E-value=11 Score=24.87 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDY-------KKRISNLEDTNYSLV 96 (153)
Q Consensus 68 E~~v~~L~~eN~~L-------~~~~~~L~~eN~~L~ 96 (153)
|.+++.|..-|+.| ..+++.|+.||..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 33444444445544 445555555665554
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.40 E-value=17 Score=26.99 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+.+|-.++..+..++..+...+..|..++..|..++..|.+
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 74
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.12 E-value=15 Score=26.19 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHhHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS-------NLEDTNYSLVSQLNKLQAIIARHTAQLSNVSIVYSLVSQLNKLQAIIA 134 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~-------~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~~~~~l~sq~~q~~~~~~ 134 (153)
+.+..|+.++.....+...|...+. ..+.++..+.++|.. +.-+||.+-+.+.+...
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe----------------LTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED----------------LTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443333 233444444445543 34455666666665554
Q ss_pred h
Q psy3460 135 R 135 (153)
Q Consensus 135 ~ 135 (153)
+
T Consensus 76 ~ 76 (97)
T 2eqb_B 76 K 76 (97)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.00 E-value=2.6 Score=26.91 Aligned_cols=29 Identities=14% Similarity=0.511 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
+|+..+...+..|..+|.+|+.++..|+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778888888888888888877766654
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.76 E-value=15 Score=27.22 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+++|+.++..|....+.....++.|..+|..|...+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 555555555555555555555555555555554443
No 77
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.64 E-value=10 Score=23.53 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTN----YSLVSQLNKLQ 103 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN----~~L~~ql~~L~ 103 (153)
+||.+|..|++-...|..++..|-.|. ..|++++..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777666554 44555554443
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.22 E-value=5.5 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 85 ISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 85 ~~~L~~eN~~L~~ql~~L~~ 104 (153)
+.....+...|+.++.++++
T Consensus 49 L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 49 LDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33333444455555555544
No 79
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.22 E-value=2.9 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|-..|+.+|..|+..|..|..+..-|+..+.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455777777777777777777776666543
No 80
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.95 E-value=21 Score=28.16 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 59 KKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 59 RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
-=+++=..||..+..++..|..|..++..|..+...++..+..
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666665555555555554443
No 81
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=76.78 E-value=2.9 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISN 87 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~ 87 (153)
+..|+.||.+|+.++++
T Consensus 8 lasleaenkqlkakvee 24 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 82
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=76.50 E-value=6.3 Score=31.70 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
.||..|..+|..|+.++..|+.++..|+.++.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666665555554443
No 83
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=76.48 E-value=7.5 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
.-.||..|...++.+..+...|++++..|+.+.
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888888877777666543
No 84
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.65 E-value=11 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKR 84 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~ 84 (153)
....+||.++..|+.||.-|+.-
T Consensus 17 ~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456666666666666666543
No 85
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.42 E-value=19 Score=25.98 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|.-++++|..+..+..++.+....++.+......|..++..|+..+.+.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777777777777777766653
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.27 E-value=13 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.....|..++..|+.+|..|..++..|...+...
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888888887766543
No 87
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.86 E-value=26 Score=26.81 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTA 111 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~ 111 (153)
..-++.|-.++..|..++..+..++..|+.||..|.++...-...-+...+
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888999999999998887655544444433
No 88
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.73 E-value=6.4 Score=31.25 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+.++.=+.-|..|..||..|..+++....|+..|+.++..++..+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444555567888888999988888888888888888887777664
No 89
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=74.63 E-value=12 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDT----NYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~e----N~~L~~ql~~L~~~v~~ 108 (153)
.+||.+|..|++-...|..++..|-.| ...|++++..|...+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457777777777777777777666555 46677888777776665
No 90
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=74.53 E-value=14 Score=23.58 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
++|=.+|+.|..||..|+..++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 3455566666666666655443
No 91
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.81 E-value=16 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+.+..|+.+.+.++.+...|..++..++.+...|+..|.
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555544444444444444443
No 92
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.54 E-value=9.4 Score=22.39 Aligned_cols=30 Identities=7% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
++|..+++.|-.++..|..++..|+.++..
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 567788888888999999999888887653
No 93
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.46 E-value=12 Score=25.96 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
...++..++..|+.+|..|+.++..|...+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665554433
No 94
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.24 E-value=32 Score=26.67 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 55 ESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 55 ~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..|-||.. .++-..+..++..+.+|..++..|+.....|-+++..|++.+..-
T Consensus 29 ~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 29 AVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544 666777777777888888888888877777777777777766543
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.75 E-value=25 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
-+|.++||.++..|......=-..+..|+.-...++.++++|...|.-+.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~ 161 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKI 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888664444223778888888888888888888875554
No 96
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=71.69 E-value=3.4 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~ 85 (153)
...|++.||.++..|+.....|...+
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999988887777776543
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.11 E-value=11 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.+...|+.++..+..++..|..++..|...+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666665555555443
No 98
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=70.90 E-value=22 Score=24.31 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
-+-+|-.++..|..|...|+.+++.+.-+...|.++...+..-+..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888888888887777666655543
No 99
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=70.15 E-value=20 Score=23.55 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 82 KKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 82 ~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..++++|..-|..|.++|..|+..+.
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq 51 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIH 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 34555566666666666655555443
No 100
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.69 E-value=4.9 Score=33.18 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLSNVS 117 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s~~~ 117 (153)
|.++..|..++..|..+++.|..+...+++++..|+..+..........+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iG 102 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYG 102 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 66788899999999999999999999999999999998888765444333
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.59 E-value=12 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
.+...|+..+..|+.++..|..++..|++.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666665543
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.46 E-value=9.4 Score=33.10 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+..||.+...|..++..++.+...+..+...++.++..++
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666666666666666666555555665555443
No 103
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.40 E-value=28 Score=25.23 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
-+..|+.++..|...+..|...+..|+..|..|-..-.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 36678888999999999999999999998888866554
No 104
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=67.85 E-value=22 Score=28.53 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 44 RRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 44 rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
--++-|-+-|+-.| -+-+++||......-++-++|...++.|..|+..|+..+.+|.-
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 15 LNKLLDPELAQSER---TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 34444545454443 57789999999999999999999999999999999999998874
No 105
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.54 E-value=3.2 Score=30.34 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
+++|..++..|+-||..|+.++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666665553
No 106
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.13 E-value=18 Score=24.48 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+.+..|+.+.+.++.+...|..++..++.+...|+..|
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444444444444444444444444433
No 107
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.85 E-value=9.3 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
...++..++..|+.+|..|+.++..|...+..
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777766665544
No 108
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.88 E-value=29 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNY 93 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~ 93 (153)
+..+++.++.+|..|+.+|..|+....
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334455555555555555555554443
No 109
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.54 E-value=12 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..|......|..|+.+|..|.+|+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555556666655553
No 110
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=64.25 E-value=9.2 Score=21.13 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 73 ILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 73 ~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
.|+.||..|..++..|.....+|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 356667777766666655555544
No 111
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=63.98 E-value=33 Score=23.68 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 49 NKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 49 NR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
|=.||-.+=-+-|+-|. .++......|..+..++...+..|..|..++..|+..+..
T Consensus 14 eLQSALeaEIqAKQ~i~---EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLS---REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554333 2445555566666666666666666666666666655554
No 112
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.57 E-value=7 Score=26.05 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYK 82 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~ 82 (153)
.+||..|+.++..|..++..|+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444
No 113
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.85 E-value=86 Score=28.09 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=56.7
Q ss_pred hcCCCCCCCCCCCh---hHHHHHHHHHHHHHhhHHHH--------------------------HHHHhHHHHHHHHHHHH
Q psy3460 21 AEGYPIPTRLPLTK---TEEKSLKKIRRKIKNKISAQ--------------------------ESRRKKKEYMDALERKV 71 (153)
Q Consensus 21 ~~g~~~p~~~p~t~---~eek~~Kr~rR~lkNR~SAq--------------------------~SR~RKKeyl~~LE~~v 71 (153)
.||+.=|+.+-+-. ..++..+..-.+|+|++.-- ..=.+=-+|.++||.++
T Consensus 41 DwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri 120 (491)
T 1m1j_A 41 DWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRI 120 (491)
T ss_dssp STTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 36777777765433 23445555556667766432 11122256888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
..|......=-..|..|+.-...++..+++|...|...
T Consensus 121 ~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 121 VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865443322778888888888888888888777654
No 114
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=62.64 E-value=3.3 Score=29.99 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
-.+||..|..++..|..+.. +...|+..|..|...++.|...
T Consensus 72 aieYIk~Lq~~~~~l~~~~~----~~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 72 SVDYIRKLQREQQRAKDLEN----RQKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776666666654322 2334667777777777666543
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.24 E-value=18 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
-..|+.++..|+.||..|++++..|...+..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777776666
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.02 E-value=19 Score=25.69 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
-+..|..++..|+.||..|++++..|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777775544443
No 117
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=61.08 E-value=38 Score=23.39 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
--+||..|..+...+..+. .+...|+..|..|.-.+++|.-
T Consensus 37 svdYI~~Lq~e~~r~~e~e----~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHH
Confidence 3677777766555553333 3333466666666665555543
No 118
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.67 E-value=22 Score=30.47 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
.|+.++..|+.+..+|...++.++.++..|.+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 119
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=60.63 E-value=17 Score=20.45 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
|..-+..|+.||..|+..++.|-+.+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456678899999999888877655
No 120
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.78 E-value=29 Score=21.58 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
|..++..|...|-+|...-+.|+.-...|+.++..|...|+.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666666667777777666665543
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.70 E-value=61 Score=27.33 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+|.+.............+++.|+++|..|+..+..+...+...-
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33344444444555566667777777777777777776666543
No 122
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=57.06 E-value=26 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.||..|...+..+.++...|+++...|
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555544333
No 123
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=56.21 E-value=27 Score=23.23 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|.+.+.+||..+..-..+ +..|+.++.++++.+.
T Consensus 23 Kde~I~eLE~~L~~kd~e--------------I~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEE--------------IQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcc
Confidence 677788887776655444 4455566666666554
No 124
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=55.81 E-value=55 Score=25.03 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3460 38 KSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEIL 74 (153)
Q Consensus 38 k~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L 74 (153)
+.++..|...++|+ ++|++|+.+|..+...+
T Consensus 8 ~~Le~Ek~~~~~rI------~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 8 QNLEVERQRRLERI------KQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34444554445544 46888888888776554
No 125
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.42 E-value=44 Score=22.42 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
.+..+++.++.+|..|+.+|..|+.....-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766544443
No 126
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.19 E-value=12 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYS 94 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~ 94 (153)
|...|..|+..+..|+-|...
T Consensus 5 lkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 444555555555544444433
No 127
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=54.17 E-value=66 Score=25.05 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
+-+..-|..|..|+.+|..|...+.....++..+.++|..
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777788877777777777777777653
No 128
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.94 E-value=57 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
+..|+.++..|...+..|..++..|+..|..|-.......+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 56667777777777777777777777777666555544333
No 129
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.69 E-value=43 Score=28.23 Aligned_cols=44 Identities=11% Similarity=-0.033 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
.+..||..+...+.+...|+..+..++.....|.+++..|...+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666677666666666666666666555543
No 130
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.44 E-value=48 Score=22.24 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.++++|.+...|+.....|..+++.-+.+-..++.++..+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444444433
No 131
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.10 E-value=52 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
||.+|-.++..+..+|..|..++..++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 132
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.76 E-value=8.2 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDY 81 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L 81 (153)
+..|+..||.++..|+.....|
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999998888777655443
No 133
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=52.25 E-value=23 Score=20.17 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
.||..+..|..-.++|.+++..|+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666655554
No 134
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.45 E-value=64 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKK 83 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~ 83 (153)
..|..|+.+|..|..||+.|..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655
No 135
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=51.44 E-value=43 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
.+.+.+.|.+.+.|+..|..|..++++|+.+-
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 46678888999999999999999999888654
No 136
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.93 E-value=37 Score=24.76 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~ 85 (153)
++..++..|..++.+|+.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~ 48 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEI 48 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 137
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.80 E-value=56 Score=22.25 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
++..+..+++.++..|..|..++..|+..+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 138
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.77 E-value=49 Score=28.45 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
.|+.++..+..+..+|..+++.+..++..+.+++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555544444444444444443
No 139
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.82 E-value=65 Score=22.70 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
|+.+++.++.....|...+..+......+...+.++
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444344444444444444444444444443
No 140
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=49.78 E-value=43 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+++..+=..+..|..+|..| +.+|..|+++.....
T Consensus 145 elid~~ld~~~~L~~~n~~L-------qkeNeRL~~E~n~~l 179 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHL-------QKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45555444444444444444 446666655554433
No 141
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.72 E-value=75 Score=25.08 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
-|..|-.++..|..++.....+++.|+.+...|+.+....+...+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 455666666666666666566666666666666665555444443
No 142
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=49.36 E-value=60 Score=22.18 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.--+.|+. ...|..+...+...+..|+.+|..|+.-+.
T Consensus 28 AL~eaL~E-N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 28 ALYEALKE-NEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433 334555556666666666667666554433
No 143
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=49.28 E-value=29 Score=27.92 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
....+|.+|.+.-=+-=.+.|+-+..-. ..+..+...+..+++.+..+|..+.+++..|+..+....
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~-------~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETY-------MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457888888776665555555444432 334455666777777777788888888877777666544
No 144
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=49.10 E-value=96 Score=24.81 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLV---SQLNKLQAIIARHTA 111 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~---~ql~~L~~~v~~~~~ 111 (153)
..|..+...|...+..|+.+|..|+ .+++.|-.+|....+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555554443 455666666666554
No 145
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=48.40 E-value=7.9 Score=31.22 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy3460 74 LKSENCDYKKRISNLEDT---NYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~e---N~~L~~ql~~L~~~v~~ 108 (153)
+..||.+|+.++..|+.+ ...|++++..|+.++.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555555444433 34445555666665443
No 146
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=48.29 E-value=78 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
..|+.++..|+..|..|..++..+..+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666665555554444
No 147
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.14 E-value=63 Score=22.06 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
|-.++.+|..|+..|+.++..++....
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655554433
No 148
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.00 E-value=63 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
..+|..++..|+.|...|+-+++.+.-.+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555555555555554444433
No 149
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.33 E-value=42 Score=19.85 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
-.||..|-..++.-.++...|+++...|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45777777777777777777777766654
No 150
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.17 E-value=67 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLE 89 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~ 89 (153)
+|..|+.+|..|..++..+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666555554
No 151
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.12 E-value=63 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~ 87 (153)
|.+.|.+||.++.....+...|+.++..
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666655555555555443
No 152
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=46.48 E-value=30 Score=27.87 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=29.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q psy3460 50 KISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSL-------VSQLNKLQAIIARH 109 (153)
Q Consensus 50 R~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L-------~~ql~~L~~~v~~~ 109 (153)
|++.-.-=.......+++..+++.+..+|++++.+++.|+.+-... ...+.+|...|+..
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i 202 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKI 202 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhc
Confidence 3333333344444556666667777777777766666665442222 34455566666553
No 153
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=46.26 E-value=33 Score=20.28 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3460 82 KKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 82 ~~~~~~L~~eN~~L~~ql 99 (153)
-.++..|+.+|..|..++
T Consensus 19 idkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 19 IDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555556666665554
No 154
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=46.14 E-value=65 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.|-.||++|+. +|+.-|..|+...+.|...-.
T Consensus 10 ~q~ll~EN~~Lre---AlkqsNq~mkeR~eeL~~wqe 43 (70)
T 3brv_B 10 LQRCLEENQELRD---AIRQSNQILRERCEELLHFQA 43 (70)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888886 556778888887777755433
No 155
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.80 E-value=52 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~ 86 (153)
..+..|..++..|+.+|..|+....
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888876443
No 156
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=45.51 E-value=33 Score=20.86 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+..+.+....|.+++..|+.....|...+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666665555555543
No 157
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=45.13 E-value=71 Score=25.38 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=7.1
Q ss_pred HHHHHHHHhhccc
Q psy3460 126 LNKLQAIIARHTA 138 (153)
Q Consensus 126 ~~q~~~~~~~~~~ 138 (153)
..+|..++..+-.
T Consensus 146 ~k~l~~~L~k~Gv 158 (213)
T 4ani_A 146 YRSLVDALKKEGV 158 (213)
T ss_dssp HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHCCC
Confidence 3556666665443
No 158
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.49 E-value=1e+02 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
....+.+|+..+..-..-+..|...+..|..++..+...+
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333333333333333333333
No 159
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.40 E-value=67 Score=27.64 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
++..++|+.+.+.+..++..+.+++...+.+.+.|-.++..|+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455677777777777777777777776666666666666655
No 160
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=44.35 E-value=77 Score=25.50 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 42 KIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.+++-+..|..+-+ +.+..|+.++++...|++.+..++.+.+.....++.+-.++
T Consensus 164 ~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 164 VVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555433 35678888888888888888888888777777777766543
No 161
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=44.09 E-value=11 Score=30.38 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRI---SNLEDTNYSLVSQLN 100 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~---~~L~~eN~~L~~ql~ 100 (153)
..|..+.+.|+.||..|+.++ ..|+.||..|+..|.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666777777766444 456778888888765
No 162
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.78 E-value=1.4e+02 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 84 RISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 84 ~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++++|+.|...|..+|+.+.+.|.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443
No 163
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.47 E-value=62 Score=23.06 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 37 EKSLKKIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 37 ek~~Kr~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+..+...|+.+- .+...+.|=.--+..+...+.++......-......++++...|+..+.
T Consensus 19 e~~I~~LR~qid---~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 19 EEEMRELRRQVD---QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 445555555552 2333333333334444444444443333322223344444455554443
No 164
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.45 E-value=75 Score=21.61 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
+...+.++..+..+...|..++..+..+...|..++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 165
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=42.73 E-value=46 Score=18.90 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
.+.|+.+++.|...|-.-++.++.|+..
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3556777777777777777777666543
No 166
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.56 E-value=35 Score=23.22 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
|.+|-.++..+..+|..|..++..++.....++...
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~Ky 37 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 37 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777766666665555554443
No 167
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.55 E-value=86 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
+..|..++..++.++..|..+++.+-.
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 168
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=41.46 E-value=18 Score=24.86 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCCCcccccCHHHHhhhhhcCCC
Q psy3460 2 FKGSTGVLHLTEEEKRTLQAEGYP 25 (153)
Q Consensus 2 ~~~~~~~~~l~~ee~~~l~~~g~~ 25 (153)
+.|.+|+-.||++|+.+|....+.
T Consensus 14 i~~~p~~~lLs~~E~~LC~~lrL~ 37 (90)
T 2aqe_A 14 LTGLPGTEKLNEKEKELCQVVRLV 37 (90)
T ss_dssp SSSSSSTTTSCHHHHHHHHHTTCC
T ss_pred ccCCCCchhcCHHHHHHHHHhCCC
Confidence 578899999999999999887743
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.11 E-value=84 Score=26.81 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
++-+..|+..++.++.++.+|..++...+..-+.|-.+++.|+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344566666666666666666666665555666666666554
No 170
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=40.91 E-value=86 Score=25.42 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ---LNKLQA 104 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q---l~~L~~ 104 (153)
+.+++..+..+..+...|..++..|+++...|... +..|..
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p 137 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAA 137 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 56667777777777777888888888888888887 665554
No 171
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.83 E-value=66 Score=20.18 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVS 97 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ 97 (153)
-..||.-|..|+..|..|...+..|+.....|..
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3557777777777787777777777666655543
No 172
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.38 E-value=1.4e+02 Score=27.21 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhH--HHHHHHHHHHH----HHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 36 EEKSLKKIRRKIKNKISAQESRRKK--KEYMDALERKV----EILK-SEN------CDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 36 eek~~Kr~rR~lkNR~SAq~SR~RK--Keyl~~LE~~v----~~L~-~eN------~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.+++.+..-..|||.+.-- ++.+| -.|+..+-..+ ..-. .+| .+|+.++..|+.+...-.+++..|
T Consensus 58 qErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667766544 44444 33433333222 1111 111 257777777776655555666666
Q ss_pred HHHHHhhc
Q psy3460 103 QAIIARHT 110 (153)
Q Consensus 103 ~~~v~~~~ 110 (153)
++.|....
T Consensus 137 QsnLedq~ 144 (562)
T 3ghg_A 137 QKNVRAQL 144 (562)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 173
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.05 E-value=16 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
.+|..++..|+-||..|+.++..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777788888899999998853
No 174
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.78 E-value=87 Score=21.28 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
.+.+++.+...+..+...|......+..+...|...+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666665555555556555555555555555555444
No 175
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.77 E-value=1.1e+02 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3460 85 ISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 85 ~~~L~~eN~~L~~ql~~L 102 (153)
+..|+.....+...+..|
T Consensus 28 i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 176
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=39.23 E-value=17 Score=30.69 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
+.|..||.+|..++++...|+..+..++.....|.+.+..|...+.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777777777777777777776665543
No 177
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=39.10 E-value=1e+02 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 71 VEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 71 v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
++.|+.|...+..+|+.-....+.|..|...++.++.
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555555666555555555554
No 178
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.73 E-value=54 Score=22.20 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 78 NCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 78 N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
...|..+...+..+...|+.+...|...+..
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666554
No 179
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.25 E-value=1.8e+02 Score=24.42 Aligned_cols=45 Identities=20% Similarity=0.085 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 54 QESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 54 q~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+.-|.+.+.+++..-.+.+.+..+|+.|+..+..+......-++.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 345566677777777777777777777777666655544444333
No 180
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.94 E-value=69 Score=19.60 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~ 104 (153)
...++.+++.++.....+-..+...+..+.......+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555443
No 181
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.51 E-value=60 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 83 KRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 83 ~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.++..|+.++..=..++..|+..+..+.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666665555543
No 182
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.13 E-value=58 Score=18.47 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
..|..|...|+..+..|.-|...|+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445544444444444443
No 183
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.09 E-value=1.1e+02 Score=21.53 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
+.|+..+..++.....++.++..+....+.+.++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566666666666666666666666555443
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.00 E-value=68 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 61 KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
.....+|..+++.|+.+...|..+.+.++.+...|+.++..++..+...
T Consensus 41 ~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 41 SNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788899999999999999998899999999999988888877654
No 185
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.93 E-value=78 Score=21.57 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+++.|-.||.+|..--.+|-.-...|..++.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvd 40 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVD 40 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333333333
No 186
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.67 E-value=1e+02 Score=21.24 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
.+...-..+|+.|+.+....+..+..|.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445555555555555555443
No 187
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.91 E-value=1.1e+02 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+..+|.+...++.+...|..++..++.+...+...|.
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444444443
No 188
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.66 E-value=1.1e+02 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q psy3460 74 LKSENCDYKKRISNLEDTNYSL---VSQLNKLQAIIAR 108 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L---~~ql~~L~~~v~~ 108 (153)
|..+...+...+..|+.+|..| -++.+.|-++|..
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555444 3455555555554
No 189
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=35.47 E-value=1.6e+02 Score=23.02 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC------cchhhHHHHHhHHH
Q psy3460 60 KKEYMDALERKVEILKSE-----NCDYKKRISNLEDTNYSLVSQLNKLQAIIARHTAQLS------NVSIVYSLVSQLNK 128 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~e-----N~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~~~~s------~~~~~~~l~sq~~q 128 (153)
=-.+++.++.++..++.+ ......++..|+.+...|+.-+..++..+........ ...++-.++-+..+
T Consensus 169 y~~~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~dh~~~ 248 (280)
T 4egw_A 169 YSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQ 248 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 345677788888777664 2344566777888888888877777766665432111 11233333333333
Q ss_pred H-----------HHHHhhccccccccCCcc
Q psy3460 129 L-----------QAIIARHTAQLSNNQNNL 147 (153)
Q Consensus 129 ~-----------~~~~~~~~~~~~~~~~~~ 147 (153)
+ ..+..-....|||++|++
T Consensus 249 ~~e~~~~~re~l~~l~d~~~s~is~~~N~i 278 (280)
T 4egw_A 249 LIDMSATYREVLTSMMDITLSLENIKMNQI 278 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 233334567888888764
No 190
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=34.62 E-value=1.4e+02 Score=23.80 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLE---DTNYSLVSQLN 100 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~---~eN~~L~~ql~ 100 (153)
.|.++..|..+|..|+.++..|. .+|..+-.++.
T Consensus 70 ~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~ 106 (252)
T 3e98_A 70 VERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTR 106 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443332 33444444433
No 191
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.32 E-value=1.6e+02 Score=22.47 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=14.7
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHH
Q psy3460 30 LPLTKTEEKSLKKIRRKIKNKISA 53 (153)
Q Consensus 30 ~p~t~~eek~~Kr~rR~lkNR~SA 53 (153)
+.||++.....+.++...+....+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~ 89 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSA 89 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777666655444
No 192
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.25 E-value=35 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy3460 91 TNYSLVSQLNKLQ 103 (153)
Q Consensus 91 eN~~L~~ql~~L~ 103 (153)
+...|++++..|+
T Consensus 22 ~i~~lkeel~~L~ 34 (109)
T 2wg5_A 22 KNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444333
No 193
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=32.99 E-value=17 Score=24.88 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=20.0
Q ss_pred CCCCCcccccCHHHHhhhhhcCCC
Q psy3460 2 FKGSTGVLHLTEEEKRTLQAEGYP 25 (153)
Q Consensus 2 ~~~~~~~~~l~~ee~~~l~~~g~~ 25 (153)
+.|.+|+-.||++|+.+|....+.
T Consensus 14 i~~~p~~~lLs~~E~~LC~~lrL~ 37 (88)
T 2elj_A 14 IQHAPDYALLSNDEQQLCIQLKIL 37 (88)
T ss_dssp HHTSTTCSSSCHHHHHHHHHTTCC
T ss_pred cccCCCchhcCHHHHHHHHHhCCC
Confidence 457889999999999999887743
No 194
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=32.64 E-value=28 Score=24.84 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCCCCcccccCHHHHhhhhhcCCC
Q psy3460 2 FKGSTGVLHLTEEEKRTLQAEGYP 25 (153)
Q Consensus 2 ~~~~~~~~~l~~ee~~~l~~~g~~ 25 (153)
+.|.+|+-.||++|+.+|....+.
T Consensus 32 i~~~pg~~LLs~~E~~LCs~lrL~ 55 (108)
T 2cuj_A 32 LTGLPGTEKLNEKEKELCQVVRLV 55 (108)
T ss_dssp CTTSTTTTTSCHHHHHHHHHTTCC
T ss_pred ccCCCCchhcCHHHHHHHHHhCCC
Confidence 568889999999999999887743
No 195
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.37 E-value=2.9e+02 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 46 KIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTN 92 (153)
Q Consensus 46 ~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN 92 (153)
...+-..|+..=..+++.+.+||.+++.|+.+-..+..+.+.|+.+.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444456677777777777777666555544444444443
No 196
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.16 E-value=1.2e+02 Score=20.76 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 42 KIRRKIKNKISAQESRRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 42 r~rR~lkNR~SAq~SR~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L 95 (153)
....-|+.+.+-+.-=.+=+.-...++.++.+.+..|.+|...+..|+.+...|
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566665555555666777888888888888888887666665555554
No 197
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.13 E-value=1.7e+02 Score=22.92 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRIS 86 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~ 86 (153)
.|+.++..|+.+|..|...+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~ 156 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWN 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 198
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.13 E-value=1.9e+02 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDY 81 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L 81 (153)
+|++.|+.++..|..+...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555
No 199
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.97 E-value=80 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNY 93 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~ 93 (153)
+....++..|+.++..|+.|..
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554443
No 200
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.74 E-value=1.1e+02 Score=20.30 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..+|.-+..|.......+..+..|+.+...|..++..+.
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555555555555555555444
No 201
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=31.71 E-value=71 Score=17.86 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNL 88 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L 88 (153)
+.||.+-..|++..+.|..+++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 202
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.62 E-value=2e+02 Score=23.03 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
|-.++..+..++..|..+++..+.|+.++..++.+.+...+..
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888888888888887776655543
No 203
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.41 E-value=98 Score=19.39 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..|.+....|..++..|..+...|+..+.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 204
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.04 E-value=1.2e+02 Score=20.18 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLNKLQAIIA 107 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~ 107 (153)
-...|..+...|..++..|+.+...|+..+.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666677777777777766554
No 205
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.79 E-value=1.7e+02 Score=23.62 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
++++|.++..|+....++....+..+.....+...|..|...+...
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~ 53 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRP 53 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5566666666666666665555555555666666777777766554
No 206
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.74 E-value=1.2e+02 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
..|..++..|+.++..|+..++..+
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666666677777776665543
No 207
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.71 E-value=2.7e+02 Score=30.56 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
.+...+.++..++.....|+.+.+.+..|...|..+++
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444443
No 208
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.21 E-value=1e+02 Score=19.11 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+.-|..|..|+.+...|...+..-...+..+.+.+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666777777777777666655566666666554
No 209
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.05 E-value=57 Score=22.91 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 87 NLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 87 ~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+|+.+...|+.++..++..+....
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555443
No 210
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.71 E-value=1.3e+02 Score=20.01 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~ 85 (153)
++.||.++..|+.+...|..++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655555444
No 211
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.00 E-value=1.5e+02 Score=20.41 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 72 EILKSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 72 ~~L~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
..|..+...|...+..|+.+|..|+.-.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555665555433
No 212
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.84 E-value=1.1e+02 Score=19.00 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRI 85 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~ 85 (153)
+||.+.+++| ..|+.+...|+.++
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4566666553 34666677776644
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.94 E-value=84 Score=27.06 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L 102 (153)
..+.++|.++.........|..+...|..+...++.++..|
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666655555555555555555555555555443
No 214
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.76 E-value=1.1e+02 Score=18.46 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEIL 74 (153)
Q Consensus 61 Keyl~~LE~~v~~L 74 (153)
|.|+++||.+...|
T Consensus 9 knyiqeleernael 22 (46)
T 3he4_B 9 KNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 56777766665444
No 215
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.72 E-value=29 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDY 81 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L 81 (153)
+..|+..|+.++..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888877554444
No 216
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.65 E-value=1.2e+02 Score=18.93 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
..||..|..-+..|++.|..|...+..|..-|+.
T Consensus 16 lkenaklenivarlendnanlekdianlekdian 49 (56)
T 3he4_A 16 LKENAKLENIVARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4578888888888888888888777776665543
No 217
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.58 E-value=1.6e+02 Score=20.26 Aligned_cols=52 Identities=8% Similarity=0.069 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3460 58 RKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARH 109 (153)
Q Consensus 58 ~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~ 109 (153)
+.-....+.+|.+++.++..+..+...+..|...+..|-.++......+...
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777777777777777777766665544
No 218
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.57 E-value=1.7e+02 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
|......|..++..|+.....|...+..++..+
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 219
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.25 E-value=1.9e+02 Score=20.92 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 88 LEDTNYSLVSQLNKLQA 104 (153)
Q Consensus 88 L~~eN~~L~~ql~~L~~ 104 (153)
+..+...|..+|..|+.
T Consensus 88 l~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 44445555555554443
No 220
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.88 E-value=1.2e+02 Score=18.53 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy3460 88 LEDTNYSL 95 (153)
Q Consensus 88 L~~eN~~L 95 (153)
|+++|..|
T Consensus 15 lenenetl 22 (49)
T 3he5_A 15 LENENETL 22 (49)
T ss_dssp HHHHHHHH
T ss_pred hhcccHHH
Confidence 33344333
No 221
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.74 E-value=2.1e+02 Score=21.31 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~ 101 (153)
-..++..|+.||.....++.....+...|..++..
T Consensus 90 Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667776666666555566655555543
No 222
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.69 E-value=1.4e+02 Score=19.51 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 62 EYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 62 eyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
.-+...|.+...++.+...|..++..|+.+......+|......+..
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666666666666555544443
No 223
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.60 E-value=1.3e+02 Score=19.01 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 79 CDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
.+|-.+++.|..||..|+.+|+.-.+.+....
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 45677788888888888888875555554433
No 224
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.44 E-value=1.9e+02 Score=20.74 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3460 82 KKRISNLEDTNYSL 95 (153)
Q Consensus 82 ~~~~~~L~~eN~~L 95 (153)
...+..|...+..|
T Consensus 41 q~El~~lr~~~~~l 54 (111)
T 2v66_B 41 EDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 225
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=25.39 E-value=77 Score=19.57 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=13.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhHH
Q psy3460 27 PTRLPLTKTEEKSLKKIRRKIKNKIS 52 (153)
Q Consensus 27 p~~~p~t~~eek~~Kr~rR~lkNR~S 52 (153)
|+...++.+|...++|+||.-|=+..
T Consensus 9 ~~~~~lsa~EkaRLrRERR~aKi~~G 34 (46)
T 3sjd_D 9 PMGSELTEAEKRRLLRERRQKKFSNG 34 (46)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHcc
Confidence 55556677777777788876554444
No 226
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.02 E-value=1.9e+02 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
+.+++.++.....|...+..+......+...+..+.
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444443
No 227
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.74 E-value=1.2e+02 Score=18.06 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 79 CDYKKRISNLEDTNYSL 95 (153)
Q Consensus 79 ~~L~~~~~~L~~eN~~L 95 (153)
..|..+++.|++|...|
T Consensus 18 ~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 18 LKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 228
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.69 E-value=1.9e+02 Score=20.50 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3460 75 KSENCDYKKRISNLEDTN 92 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN 92 (153)
..-..+|..+|..|+++.
T Consensus 48 ~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 229
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.65 E-value=2e+02 Score=20.77 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 68 E~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
..++..|+.||.....++.....+...|..++.
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544445554444443
No 230
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.62 E-value=2.1e+02 Score=21.07 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3460 76 SENCDYKKRISNLEDT 91 (153)
Q Consensus 76 ~eN~~L~~~~~~L~~e 91 (153)
.-..+|+.++..|+.|
T Consensus 65 e~~keLh~~I~~LEeE 80 (133)
T 1j1d_C 65 DLARQLHARVDKVDEE 80 (133)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 231
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.36 E-value=1.7e+02 Score=19.98 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
|.+|--+|..+++|-.+...++..-..+...|.++|.
T Consensus 28 i~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444555544444444444444445555555544
No 232
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.20 E-value=1.6e+02 Score=24.14 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLED 90 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~ 90 (153)
.++.|+.+.+.|..|..+|+...+.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444444444444433333
No 233
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.10 E-value=83 Score=20.12 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILKSENCDY 81 (153)
Q Consensus 61 Keyl~~LE~~v~~L~~eN~~L 81 (153)
+.|+..||.++..|+.....|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888887776544433
No 234
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.10 E-value=1.9e+02 Score=20.29 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy3460 63 YMDALERKVEILKSENCDYKK---RISNLEDTNYSLVSQLNK 101 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~---~~~~L~~eN~~L~~ql~~ 101 (153)
...+|+.+++.|+.+...|.. +...|.+.-..|..+|..
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445666666666666665533 222334444444444443
No 235
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.98 E-value=1.7e+02 Score=19.67 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 80 DYKKRISNLEDTNYSLVSQLNKLQAII 106 (153)
Q Consensus 80 ~L~~~~~~L~~eN~~L~~ql~~L~~~v 106 (153)
+|+.++..+..+|..|..++..++..+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~ 30 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDI 30 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 236
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.81 E-value=3.2e+02 Score=23.55 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 77 ENCDYKKRISNLEDTNYSLVSQLN 100 (153)
Q Consensus 77 eN~~L~~~~~~L~~eN~~L~~ql~ 100 (153)
+...|+..+..+......|.+++.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444333333333333333
No 237
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.34 E-value=2.6e+02 Score=24.10 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3460 63 YMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIARHT 110 (153)
Q Consensus 63 yl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~~~ 110 (153)
+...+..++..|+.....-...+..|+.....+...+..|...|....
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444455555554444555666666666666666666666665543
No 238
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.25 E-value=1.4e+02 Score=19.49 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy3460 88 LEDTNYSLVSQLN 100 (153)
Q Consensus 88 L~~eN~~L~~ql~ 100 (153)
|+.++..|..++.
T Consensus 62 L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 62 MRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 239
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=23.12 E-value=1.8e+02 Score=19.62 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103 (153)
Q Consensus 60 KKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~ 103 (153)
|-..|..|+..+..-..--..|...+-.+--||.-|.+.+..|+
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 44555666655543333334466666667777777777776654
No 240
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.67 E-value=2.6e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=7.2
Q ss_pred HHHHhhhhhcCCCCCC
Q psy3460 13 EEEKRTLQAEGYPIPT 28 (153)
Q Consensus 13 ~ee~~~l~~~g~~~p~ 28 (153)
..--|--+..|+-.|.
T Consensus 19 ~~tlr~y~~~gll~p~ 34 (278)
T 1r8e_A 19 IKALRYYDKIDLFKPA 34 (278)
T ss_dssp HHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHCCCCCCC
Confidence 3333444455654444
No 241
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.64 E-value=2.1e+02 Score=20.26 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 74 LKSENCDYKKRISNLEDTNYSL 95 (153)
Q Consensus 74 L~~eN~~L~~~~~~L~~eN~~L 95 (153)
|..-..+|..+|..|+++.=.|
T Consensus 47 L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444555555555443333
No 242
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.48 E-value=2.3e+02 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 75 KSENCDYKKRISNLEDTNYSLVSQL 99 (153)
Q Consensus 75 ~~eN~~L~~~~~~L~~eN~~L~~ql 99 (153)
...|..|..++..|+..|..|...+
T Consensus 49 ~~~~~eL~~~~~~Le~~n~~L~~~l 73 (155)
T 2oto_A 49 FKRAEELEKAKQALEDQRKDLETKL 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 243
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.68 E-value=1.8e+02 Score=21.66 Aligned_cols=17 Identities=12% Similarity=-0.072 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3460 65 DALERKVEILKSENCDY 81 (153)
Q Consensus 65 ~~LE~~v~~L~~eN~~L 81 (153)
..||.++..+......+
T Consensus 3 ~~l~~~~~~~~~~~~~~ 19 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVH 19 (192)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555554444433333
No 244
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.52 E-value=1.5e+02 Score=21.33 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 64 MDALERKVEILKSENCDYKKRISNLEDTNYSLVSQ 98 (153)
Q Consensus 64 l~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~q 98 (153)
++.|+..+..++.....++.++..++.....+.+.
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677777777776666666554
No 245
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.47 E-value=1.3e+02 Score=24.70 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3460 70 KVEILKSENCDYKKRISNLEDT 91 (153)
Q Consensus 70 ~v~~L~~eN~~L~~~~~~L~~e 91 (153)
+++.|..+|..|.++++.|+.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 246
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.44 E-value=2e+02 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3460 67 LERKVEILKSENCDYKKRISN 87 (153)
Q Consensus 67 LE~~v~~L~~eN~~L~~~~~~ 87 (153)
|+.+++.|..+-..|..++..
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 247
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.39 E-value=1.9e+02 Score=19.26 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 66 ALERKVEILKSENCDYKKRISNLEDTNYSLV 96 (153)
Q Consensus 66 ~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~ 96 (153)
.|...+..+..|+.+|..++..++.+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766665555
No 248
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.39 E-value=1.9e+02 Score=19.04 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3460 57 RRKKKEYMDALERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQAIIAR 108 (153)
Q Consensus 57 R~RKKeyl~~LE~~v~~L~~eN~~L~~~~~~L~~eN~~L~~ql~~L~~~v~~ 108 (153)
|+.-..-|..||..+..+..+-......-+.|-+-...|-.++...+.++.+
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777777777766666555555555555556666666666666554
No 249
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.35 E-value=1.4e+02 Score=20.58 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3460 81 YKKRISNLEDTNYSLVSQLNKLQAI 105 (153)
Q Consensus 81 L~~~~~~L~~eN~~L~~ql~~L~~~ 105 (153)
|++++..|+.+...|...|..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444555555555555555543
No 250
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.16 E-value=87 Score=20.46 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy3460 61 KEYMDALERKVEILK 75 (153)
Q Consensus 61 Keyl~~LE~~v~~L~ 75 (153)
+.|+..||.++..|+
T Consensus 47 ~~~~~~Le~rl~~le 61 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMM 61 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888887776654
Done!