RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3460
(153 letters)
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId:
6239]}
Length = 74
Score = 30.5 bits (69), Expect = 0.018
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 28 TRLPLTKTEEKSLKKIRRKIKNKISAQESRRKKKEYMDAL 67
L++ + + ++KIRR+ KNK++A+ R+++ + D +
Sbjct: 35 KNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 74
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 28.5 bits (62), Expect = 0.28
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 16 KRTLQAEGYPI-PTRLPLTKTEEKSLKKIRRKIKNK 50
K L+ EG R P+T + +K K
Sbjct: 255 KELLKLEGVDAGYCREPMTSKATAEQVAKAKDLKAK 290
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 28.3 bits (62), Expect = 0.31
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 16 KRTLQAEGYPI-PTRLPLTKTEEKSLKKIRRKIKN 49
K LQ G + RLPL E+ ++ +++
Sbjct: 255 KTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQS 289
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 28.3 bits (62), Expect = 0.34
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 16 KRTLQAEGYPI-PTRLPLTKTEEKSLKKIRRKIK 48
K L+ +G + RLP + + + ++
Sbjct: 257 KAGLRLQGIDVGDPRLPQVAATPEQIDALAADMR 290
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 27.8 bits (60), Expect = 0.60
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 23 GYPIPTRLPLTKTEEKSLKKIRRKIKNKI 51
GYP P PL EE+ L K I+ K+
Sbjct: 257 GYPRPPIFPLDDEEERQLIKKVEGIRAKL 285
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 27.6 bits (60), Expect = 0.67
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 16 KRTLQAEGYPI-PTRLPLTKTEEKSLKKIRRKIK 48
K L G+ RLPL EK+++ +R +K
Sbjct: 257 KAALNLMGFIENELRLPLVPASEKTVELLRNVLK 290
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2,
SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Length = 308
Score = 26.3 bits (56), Expect = 1.8
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 9 LHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKK-IRRKIKNKISAQESRRKKKEYMDAL 67
LT E++ + + G+ P + E K K R ++ ++ +A +
Sbjct: 3 FALTAEQRASFEKNGFIGPFDA-YSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNI 61
Query: 68 ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKL 102
L + + D S++
Sbjct: 62 ANYDRHLDDDFLASHICRPEICDRVESILGPNVLC 96
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional
dehydrogenase/ferrochelatase Met8p, dimerisation and
C-terminal domains {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 123
Score = 25.6 bits (56), Expect = 1.8
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 40 LKKIRRKIKNKISAQESRRKKKEYMDAL 67
L ++RR I+ + + + ++
Sbjct: 50 LGELRRGIRLLAPDDKDVKYRMDWARRC 77
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 24.9 bits (54), Expect = 2.6
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 39 SLKKIRRKIKNKISAQESRRKK--KEYMDALERKVEILKSENCDYKKRISNLEDTNYSLV 96
+L + +++K ++ ++ R + K A + E L + + LE+
Sbjct: 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91
Query: 97 SQLNKLQAII 106
++L L +
Sbjct: 92 ARLEALLLQV 101
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 25.8 bits (55), Expect = 2.7
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 46 KIKNKISAQESRRKKKEYMDAL--ERKVEILKSENCDYKKRISNLEDTNYSLVSQLNKLQ 103
K K + SA E RR++ L ++ E L ++ D S + +
Sbjct: 11 KNKGRFSADELRRRRDTQQVELRKAKRDEALAK-----RRNFIPPTDGADSDEEDESSVS 65
Query: 104 AIIARHTAQLSNV-SIVYSLVSQLNKLQAIIARHTAQLSNNQNN 146
A ++ + + L S + Q Q+ + ++
Sbjct: 66 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHR 109
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 211
Score = 25.3 bits (55), Expect = 3.1
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 1 MFKGSTGVLHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQ-ESRRK 59
F S L L + + G PIP + +T + EK++KKI+ ++ + S
Sbjct: 13 QFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDY 72
Query: 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTN 92
+ + A E + ++ + + + L N
Sbjct: 73 YIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANN 105
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 24.5 bits (53), Expect = 3.8
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 51 ISAQESRRKKKEYMDALERKVEI---LKSENCDYKKRISNL 88
IS + + K+E+ + V++ ++ ++C Y ++ L
Sbjct: 4 ISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQL 44
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 218
Score = 24.7 bits (53), Expect = 5.2
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 1 MFKGSTGVLHLTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIRRKIKNKISAQ-ESRRK 59
F S LHL + + G PI + +T K++KKI+ ++ + +
Sbjct: 14 QFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQ 73
Query: 60 KKEYMDALERKVEILKSENCDYKKRISNLEDTN 92
K + E + S ++ N
Sbjct: 74 YKCPVAMEEADDTVAPSSTFCKVYTLTPFLANN 106
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525,
N-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 90
Score = 23.8 bits (51), Expect = 6.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 11 LTEEEKRTLQAEGYPIPTRLPLTKTEEKSLKKIR 44
L+++E+R+L P TR+P ++ + L K R
Sbjct: 17 LSKKERRSLLERLKPYYTRIPFSEKADLRLVKAR 50
>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 141
Score = 23.9 bits (52), Expect = 6.8
Identities = 8/82 (9%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 9 LHLTEEEKRTLQAEGYPIPTRLPLTKTEEKS-----LKKIRRKIKNKISAQESRRKKKEY 63
+H TE+ ++ +A P + ++ K ++ + ++ ++ + E
Sbjct: 12 VHSTEDREKVGEAISTLFPFEFEIAVSKAKGHYGNPMEYLEVELTKSSEIKKFWKNLLEL 71
Query: 64 MDALERKVEILKSENCDYKKRI 85
+ ++ + D + +
Sbjct: 72 LGEQAEEILSTLEDRIDEQNVL 93
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 23.9 bits (51), Expect = 7.8
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 56 SRRKKKEYMDALERKVEILKSENC-DYKKRISNLEDTNY 93
+RR++ +YM ++ S+ ++ E T Y
Sbjct: 2 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPY 40
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 23.8 bits (51), Expect = 9.1
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 24 YPIPTRLPLTKTEEKSLKKIRRK--IKNKISAQESRRKKKEYMDALERKVEILKSENCDY 81
PLT+ K L KI R +++ + RR + AL + EI + E+
Sbjct: 97 IIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKA 156
Query: 82 KKRISNLEDTN 92
++ I L D
Sbjct: 157 QEEIQKLTDVA 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.126 0.327
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,327
Number of extensions: 20736
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 50
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.0 bits)